public class SAMReadGroupRecord extends AbstractSAMHeaderRecord
Modifier and Type | Class and Description |
---|---|
static class |
SAMReadGroupRecord.PlatformValue |
Modifier and Type | Field and Description |
---|---|
static String |
DATE_RUN_PRODUCED_TAG |
static String |
DESCRIPTION_TAG |
static String |
FLOW_ORDER_TAG |
static String |
KEY_SEQUENCE_TAG |
static String |
LIBRARY_TAG |
static String |
PLATFORM_MODEL_TAG |
static String |
PLATFORM_TAG |
static String |
PLATFORM_UNIT_TAG |
static String |
PREDICTED_MEDIAN_INSERT_SIZE_TAG |
static String |
PROGRAM_GROUP_TAG |
static String |
READ_GROUP_ID_TAG |
static String |
READ_GROUP_SAMPLE_TAG |
static String |
SEQUENCING_CENTER_TAG |
static Set<String> |
STANDARD_TAGS |
serialVersionUID
Constructor and Description |
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SAMReadGroupRecord(String id) |
SAMReadGroupRecord(String id,
SAMReadGroupRecord srcProgramRecord) |
attributesEqual, attributesHashCode, getAttribute, getAttributes, setAttribute, setAttribute, toString
public static final String READ_GROUP_ID_TAG
public static final String SEQUENCING_CENTER_TAG
public static final String DESCRIPTION_TAG
public static final String DATE_RUN_PRODUCED_TAG
public static final String FLOW_ORDER_TAG
public static final String KEY_SEQUENCE_TAG
public static final String LIBRARY_TAG
public static final String PROGRAM_GROUP_TAG
public static final String PREDICTED_MEDIAN_INSERT_SIZE_TAG
public static final String PLATFORM_TAG
public static final String PLATFORM_MODEL_TAG
public static final String PLATFORM_UNIT_TAG
public static final String READ_GROUP_SAMPLE_TAG
public SAMReadGroupRecord(String id)
public SAMReadGroupRecord(String id, SAMReadGroupRecord srcProgramRecord)
public String getId()
AbstractSAMHeaderRecord
getId
in class AbstractSAMHeaderRecord
public String getReadGroupId()
public String getSample()
public void setSample(String value)
public String getLibrary()
public void setLibrary(String value)
public String getPlatformUnit()
public void setPlatformUnit(String pu)
public String getPlatform()
public void setPlatform(String platform)
public Date getRunDate()
public String getFlowOrder()
public void setFlowOrder(String flowOrder)
public String getKeySequence()
public void setKeySequence(String keySequence)
public void setRunDate(Date runDate)
public String getSequencingCenter()
public void setSequencingCenter(String center)
public String getDescription()
public void setDescription(String description)
public Integer getPredictedMedianInsertSize()
public void setPredictedMedianInsertSize(Integer predictedMedianInsertSize)
public String getProgramGroup()
public void setProgramGroup(String programGroup)
public String getPlatformModel()
public void setPlatformModel(String platformModel)
public boolean equivalent(SAMReadGroupRecord that)