public class RNASequenceCreator extends java.lang.Object implements SequenceCreatorInterface<NucleotideCompound>
Constructor and Description |
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RNASequenceCreator(CompoundSet<NucleotideCompound> compoundSet) |
Modifier and Type | Method and Description |
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AbstractSequence<NucleotideCompound> |
getSequence(java.util.List<NucleotideCompound> list) |
AbstractSequence<NucleotideCompound> |
getSequence(ProxySequenceReader<NucleotideCompound> proxyLoader,
long index) |
AbstractSequence<NucleotideCompound> |
getSequence(java.lang.String sequence,
long index) |
public RNASequenceCreator(CompoundSet<NucleotideCompound> compoundSet)
compoundSet
- public AbstractSequence<NucleotideCompound> getSequence(java.lang.String sequence, long index) throws CompoundNotFoundException
getSequence
in interface SequenceCreatorInterface<NucleotideCompound>
sequence
- index
- CompoundNotFoundException
public AbstractSequence<NucleotideCompound> getSequence(ProxySequenceReader<NucleotideCompound> proxyLoader, long index)
getSequence
in interface SequenceCreatorInterface<NucleotideCompound>
proxyLoader
- index
- public AbstractSequence<NucleotideCompound> getSequence(java.util.List<NucleotideCompound> list)
getSequence
in interface SequenceCreatorInterface<NucleotideCompound>
list
-