START_PARTITION_ALN
example.phy example.nex
d59_8.phy d59_8.nex
END_PARTITION_ALN

START_SINGLE_ALN
example.phy
prot_M126_27_269.phy
END_SINGLE_ALN

START_PARTITION_OPTIONS
-sp
-spp
-spj
END_PARTITION_OPTIONS

START_GENERIC_OPTIONS
-m TEST -n 1000 
-m TEST -bb 1000 -n 1000
-m TEST -alrt 1000 -n 1000
-m TEST -lbp 1000 -n 1000
-m TEST -bb 1000 -alrt 1000 -lbp 1000 -n 1000
-m TEST -b 10 -n 1000
END_GENERIC_OPTIONS



