API Documentation¶
nibabel |
Read / write access to some common neuroimaging file formats |
File Formats¶
analyze |
Read / write access to the basic Mayo Analyze format |
spm2analyze |
Read / write access to SPM2 version of analyze image format |
spm99analyze |
Read / write access to SPM99 version of analyze image format |
gifti |
GIfTI format IO |
freesurfer |
Reading functions for freesurfer files |
minc1 |
Read MINC1 format images |
minc2 |
Preliminary MINC2 support |
nicom |
DICOM reader |
nifti1 |
Read / write access to NIfTI1 image format |
nifti2 |
Read / write access to NIfTI2 image format |
ecat |
Read ECAT format images |
parrec |
Read images in PAR/REC format. |
trackvis |
Read and write trackvis files |
Image Utilities¶
eulerangles |
Module implementing Euler angle rotations and their conversions |
funcs |
Processor functions for images |
imageclasses |
Define supported image classes and names |
imageglobals |
Defaults for images and headers |
loadsave |
Utilities to load and save image objects |
orientations |
Utilities for calculating and applying affine orientations |
quaternions |
Functions to operate on, or return, quaternions. |
spatialimages |
A simple spatial image class |
volumeutils |
Utility functions for analyze-like formats |
Float / integer conversion¶
arraywriters |
Array writer objects |
casting |
Utilties for casting numpy values in various ways |
System utilities¶
data |
Utilities to find files from NIPY data packages |
environment |
Settings from the system environment relevant to NIPY |
Miscellaneous Helpers¶
arrayproxy |
Array proxy base class |
affines |
Utility routines for working with points and affine transforms |
batteryrunners |
Battery runner classes and Report classes |
data |
Utilities to find files from NIPY data packages |
dft |
DICOM filesystem tools |
fileholders |
Fileholder class |
filename_parser |
Create filename pairs, triplets etc, with expected extensions |
fileslice |
Utilities for getting array slices out of file-like objects |
onetime |
Descriptor support for NIPY. |
openers |
Context manager openers for various fileobject types |
optpkg |
Routines to support optional packages |
rstutils |
ReStructured Text utilities |
tmpdirs |
Contexts for with statement providing temporary directories |
tripwire |
Class to raise error for missing modules or other misfortunes |
wrapstruct |
Class to wrap numpy structured array |
Alphabetical API reference¶
- API Reference
nibabel
affines
analyze
arrayproxy
arraywriters
batteryrunners
benchmarks
casting
checkwarns
data
deprecated
dft
ecat
environment
eulerangles
fileholders
filename_parser
fileslice
freesurfer
funcs
gifti
imageclasses
imageglobals
keywordonly
loadsave
minc
minc1
minc2
mriutils
nicom
nifti1
nifti2
onetime
openers
optpkg
orientations
parrec
py3k
quaternions
rstutils
spaces
spatialimages
spm2analyze
spm99analyze
tmpdirs
trackvis
tripwire
volumeutils
wrapstruct