Documentation for COBRApy
=========================
For installation instructions, please see `INSTALL.md
<https://github.com/opencobra/cobrapy/blob/master/INSTALL.md>`_.

Many of the examples below are viewable as IPython notebooks, which can
be viewed at `nbviewer
<http://nbviewer.ipython.org/github/opencobra/cobrapy/tree/master/documentation_builder/>`_.

.. toctree::
    :numbered:
    :maxdepth: 2

    getting_started
    building_model
    io
    simulating
    deletions
    phenotype_phase_plane
    milp
    qp
    loopless
    gapfilling
    solvers
    pymatbridge
    faq
    cobra


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

