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OpenSwathWorkflow::ChromExtractParams Struct Reference

ChromatogramExtractor parameters. More...

Public Attributes

double min_upper_edge_dist
 Whether to not extract anything closer than this (in Da) from the upper edge. More...
 
double mz_extraction_window
 Extraction window in Da or ppm (e.g. 50ppm means extraction +/- 25ppm) More...
 
bool ppm
 Whether the extraction window is given in ppm or Da. More...
 
String extraction_function
 The extraction function in mass space. More...
 
double rt_extraction_window
 The retention time extraction window. More...
 
double extra_rt_extract
 Whether to extract some extra in the retention time (can be useful if one wants to look at the chromatogram outside the window) More...
 

Detailed Description

ChromatogramExtractor parameters.

A small helper struct to pass the parameters for the chromatogram extraction through to the actual algorithm.

Member Data Documentation

double extra_rt_extract

Whether to extract some extra in the retention time (can be useful if one wants to look at the chromatogram outside the window)

Referenced by OpenSwathWorkflow::prepare_coordinates_wrap().

String extraction_function

The extraction function in mass space.

Referenced by OpenSwathWorkflow::performExtraction(), and OpenSwathWorkflow::simpleExtractChromatograms().

double min_upper_edge_dist

Whether to not extract anything closer than this (in Da) from the upper edge.

Referenced by OpenSwathWorkflow::performExtraction(), and OpenSwathWorkflow::simpleExtractChromatograms().

double mz_extraction_window

Extraction window in Da or ppm (e.g. 50ppm means extraction +/- 25ppm)

Referenced by OpenSwathWorkflow::performExtraction(), and OpenSwathWorkflow::simpleExtractChromatograms().

bool ppm

Whether the extraction window is given in ppm or Da.

Referenced by OpenSwathWorkflow::performExtraction(), and OpenSwathWorkflow::simpleExtractChromatograms().

double rt_extraction_window

OpenMS / TOPP release 2.0.0 Documentation generated on Fri Jan 15 2016 14:22:32 using doxygen 1.8.9.1