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CompNovoCID

Performs a peptide/protein identification with the CompNovo engine.

pot. predecessor tools $ \longrightarrow $ CompNovoCID $ \longrightarrow $ pot. successor tools
any signal-/preprocessing tool
(in mzML format)
IDFilter or
any protein/peptide processing tool
Experimental classes:
This TOPP-tool is not well tested and not all features might be properly implemented and tested!

All spectra are assumed to be CID spectra only.

The details are described in the publication:

Andreas Bertsch, Andreas Leinenbach, Anton Pervukhin, Markus Lubeck, Ralf Hartmer, Carsten Baessmann, Yasser A Elnakady, Rolf Müller, Sebastian Böcker, Christian G Huber and Oliver Kohlbacher (2009) "De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation" Electrophoresis, 30(21):3736-3747. (PubMed ID: 19862751)

Experimental classes:
This implementation may contain bugs!

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 1.11.1 Documentation generated on Mon Aug 18 2014 14:41:09 using doxygen 1.8.7