Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
InclusionExclusionListCreator

A tool for creating inclusion and/or exclusion lists for LC-MS/MS.

potential predecessor tools $ \longrightarrow $ InclusionExclusionListCreator $ \longrightarrow $ potential successor tools
MascotAdapter (or other ID engines) -
FeatureFinderCentroided

Currently this tool can create tab-delimited inclusion or exclusion lists (m/z, RT start, RT stop). The input can either be peptide identifications from previous runs, a feature map or a FASTA-file with proteins. Inclusion and exclusion charges can be specified for FASTA and idXML input. If no charges are specified in the case of peptide id input, only the charge state of the peptide id is in/excluded, otherwise all given charge states are entered to the list.

The RT window size can be specified in the RT section of the INI file, either as relative window with [rt-rel_rt_window_size*rt,rt+rel_rt_window_size*rt] or absolute window.

The default is RT in minutes, but seconds can also be used (see INI file).

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 1.11.1 Documentation generated on Mon Aug 18 2014 14:41:09 using doxygen 1.8.7