#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/FILTERING/TRANSFORMERS/Normalizer.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <QtCore/QStringList>
#include <QtCore/QProcess>
#include <QtCore/QObject>
#include <QFileInfo>
#include <algorithm>
#include <numeric>
#include <iostream>
#include <iomanip>
#include <fstream>
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bool | notInSeq (String res_seq, String query) |
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void | generateTargetSequences (const String &res_seq, Size pos, const map< char, vector< char > > &map_source2target, StringList &target_sequences) |
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ModificationMassesResult | initModificationMassesRNA (StringList target_nucleotides, StringList mappings, StringList restrictions, StringList modifications, String sequence_restriction, bool cysteine_adduct, Int max_length=4) |
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int | main (int argc, const char **argv) |
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#define RT_FACTOR 10000000 |
#define RT_FACTOR_PRECISION 1000 |
#define RT_MODULO_FACTOR 10000 |
void generateTargetSequences |
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const String & |
res_seq, |
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Size |
pos, |
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const map< char, vector< char > > & |
map_source2target, |
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StringList & |
target_sequences |
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) |
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ModificationMassesResult initModificationMassesRNA |
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StringList |
target_nucleotides, |
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StringList |
mappings, |
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StringList |
restrictions, |
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StringList |
modifications, |
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String |
sequence_restriction, |
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bool |
cysteine_adduct, |
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Int |
max_length = 4 |
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) |
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int main |
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int |
argc, |
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const char ** |
argv |
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) |
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bool notInSeq |
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String |
res_seq, |
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String |
query |
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) |
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