Identifies peptides in MS/MS spectra via Mascot.
pot. predecessor tools | ![]() ![]() | pot. successor tools |
any signal-/preprocessing tool (in mzML format) | IDFilter or any protein/peptide processing tool |
This wrapper application serves for getting peptide identifications for MS/MS spectra. It communicates with the Mascot server over the network and is not needed to be called from same machine.
It support Mascot security features and has also proxy server support. This minimal version of Mascot support by this wrapper is version 2.2.x. Mascot 2.3 works as well, but has not been tested extensively.
The command line parameters of this tool are:
INI file documentation of this tool:
For the parameters of the algorithm section see the algorithms documentation:
Mascot_server
Mascot_parameters
OpenMS / TOPP release 1.11.1 | Documentation generated on Mon Aug 18 2014 14:41:09 using doxygen 1.8.7 |