sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build03.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ncbi-blast+ 2.2.26-3 (armhf) 24 May 2012 06:32 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ncbi-blast+ Version: 2.2.26-3 Source Version: 2.2.26-3 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-objxC0' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-6f1c5688-58ad-4a03-a184-d920b7c6c121' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'ncbi-blast+' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/ncbi-blast+/trunk/ Need to get 12.9 MB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main ncbi-blast+ 2.2.26-3 (dsc) [2316 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main ncbi-blast+ 2.2.26-3 (tar) [12.9 MB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main ncbi-blast+ 2.2.26-3 (diff) [22.2 kB] Fetched 12.9 MB in 1s (9952 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/ncbi-blast+-objxC0/resolver-c2YMJm/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 20 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10670 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), autotools-dev (>= 20100122), debhelper (>= 7.0.50~), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libpcre3-dev, quilt (>= 0.46-7~), time, zlib1g-dev Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), autotools-dev (>= 20100122), debhelper (>= 7.0.50~), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libpcre3-dev, quilt (>= 0.46-7~), time, zlib1g-dev dpkg-deb: building package `sbuild-build-depends-ncbi-blast+-dummy' in `/build/ncbi-blast+-objxC0/resolver-Dx7_TC/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ncbi-blast+ build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libboost-test-dev libboost-test1.49-dev libboost-test1.49.0 libboost1.49-dev libbz2-dev libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt time zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libboost1.49-doc libboost-chrono1.49-dev libboost-date-time1.49-dev libboost-filesystem1.49-dev libboost-graph-parallel1.49-dev libboost-graph1.49-dev libboost-iostreams1.49-dev libboost-locale1.49-dev libboost-math1.49-dev libboost-mpi1.49-dev libboost-program-options1.49-dev libboost-python1.49-dev libboost-random1.49-dev libboost-regex1.49-dev libboost-serialization1.49-dev libboost-signals1.49-dev libboost-system1.49-dev libboost-thread1.49-dev libboost-timer1.49-dev libboost-wave1.49-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libboost-test-dev libboost-test1.49-dev libboost-test1.49.0 libboost1.49-dev libbz2-dev libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 31 newly installed, 0 to remove and 20 not upgraded. Need to get 0 B/20.7 MB of archives. After this operation, 123 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10670 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.2-1_armhf.deb) ... 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Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-ncbi-blast+-dummy. Unpacking sbuild-build-depends-ncbi-blast+-dummy (from .../sbuild-build-depends-ncbi-blast+-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.2-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libpcrecpp0:armhf (1:8.30-5) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up time (1.7-23.1) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package time should be updated. Setting up autotools-dev (20120210.1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up diffstat (1.55-2) ... Setting up libboost1.49-dev (1.49.0-2) ... Setting up libboost-test1.49.0 (1.49.0-2) ... Setting up libboost-test1.49-dev (1.49.0-2) ... Setting up libboost-test-dev (1.49.0.1) ... Setting up libbz2-dev:armhf (1.0.6-1) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up quilt (0.60-2) ... Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffstat_1.55-2 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-7 libblkid1_2.20.1-4 libboost-test-dev_1.49.0.1 libboost-test1.49-dev_1.49.0-2 libboost-test1.49.0_1.49.0-2 libboost1.49-dev_1.49.0-2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-7 libncursesw5_5.9-7 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 time_1.7-23.1 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri May 11 03:51:00 2012 UTC using RSA key ID F14A64A2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.2.26-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.2.26 dpkg-source: info: unpacking ncbi-blast+_2.2.26.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.2.26-3.debian.tar.gz dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying wrong_path_to_touch.patch dpkg-source: info: applying fix_gcc47_errors dpkg-source: info: applying use_pie_for_apps Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-6f1c5688-58ad-4a03-a184-d920b7c6c121 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package ncbi-blast+ dpkg-buildpackage: source version 2.2.26-3 dpkg-source --before-build ncbi-blast+-2.2.26 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev --with quilt dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ dh_quilt_unpatch -O-Dc\+\+ Removing patch use_pie_for_apps Restoring c++/src/build-system/Makefile.app.in Removing patch fix_gcc47_errors Restoring c++/src/serial/stdtypes.cpp Restoring c++/include/util/rangemap.hpp Restoring c++/include/util/bitset/bmserial.h Restoring c++/include/util/bitset/bmfunc.h Restoring c++/include/util/linkedset.hpp Restoring c++/include/connect/ncbi_conn_stream.hpp Restoring c++/include/corelib/ncbistr.hpp Restoring c++/include/corelib/ncbistl.hpp Restoring c++/include/corelib/ncbiexpt.hpp Restoring c++/include/corelib/ncbimisc.hpp Restoring c++/include/serial/iterator.hpp Restoring c++/include/serial/impl/stltypes.hpp Removing patch 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c++/src/corelib/Makefile.test_boost.lib Restoring c++/src/corelib/Makefile.test_mt.lib Restoring c++/src/serial/Makefile.serial.lib Restoring c++/src/algo/dustmask/Makefile.xalgodustmask.lib Restoring c++/src/algo/winmask/Makefile.xalgowinmask.lib Restoring c++/src/algo/segmask/Makefile.xalgosegmask.lib Restoring c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Restoring c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib Restoring c++/src/algo/blast/core/Makefile.blast.lib Restoring c++/src/algo/blast/Makefile.blast_macros.mk Restoring c++/src/algo/blast/format/Makefile.xblastformat.lib Restoring c++/src/algo/blast/api/Makefile.xblast.lib Restoring c++/src/algo/blast/blastinput/Makefile.blastinput.lib Restoring c++/src/html/Makefile.html.lib Restoring c++/src/objtools/readers/Makefile.xobjread.lib Restoring c++/src/objtools/simple/Makefile.xobjsimple.lib Restoring c++/src/objtools/alnmgr/Makefile.alnmgr.lib Restoring c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib Restoring c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib Restoring c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib Restoring c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib Restoring c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib Restoring c++/src/objtools/blast/services/Makefile.blast_services.lib Restoring c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib Restoring c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib Restoring c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib Restoring c++/src/objtools/align_format/Makefile.align_format.lib Removing patch legacy_rename_rpsblast Restoring c++/src/app/blast/legacy_blast.pl Removing patch hurd_fixes Restoring c++/src/connect/ncbi_socket_cxx.cpp Restoring c++/src/connect/ext/ncbi_localnet.c Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac No patches applied debian/rules override_dh_clean make[1]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' dh_clean for x in c++/src/objects/*/*.files; do \ (cd `dirname $x` && ../../../BUILD/build/new_module.sh \ `basename $x .files`.module purge_sources); \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in make[1]: [override_dh_clean] Error 2 (ignored) rm -rf c++/BUILD c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module make[1]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev --with quilt dh_testdir -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ dh_quilt_patch -a -O-Dc\+\+ Applying patch hurd_fixes patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac patching file c++/src/connect/ncbi_socket_cxx.cpp patching file c++/src/connect/ext/ncbi_localnet.c Applying patch legacy_rename_rpsblast patching file c++/src/app/blast/legacy_blast.pl Applying patch fix_lib_deps patching file c++/src/algo/blast/core/Makefile.blast.lib patching file c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib patching file c++/src/algo/blast/format/Makefile.xblastformat.lib patching file c++/src/algo/winmask/Makefile.xalgowinmask.lib patching file c++/src/cgi/Makefile.cgi.lib patching file c++/src/html/Makefile.html.lib patching file c++/src/objects/blast/Makefile.xnetblastcli.lib patching file c++/src/objtools/align_format/Makefile.align_format.lib patching file c++/src/objtools/alnmgr/Makefile.alnmgr.lib patching file c++/src/objtools/readers/Makefile.xobjread.lib patching file c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib patching file c++/src/objtools/simple/Makefile.xobjsimple.lib patching file c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib patching file c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib patching file c++/src/algo/blast/api/Makefile.xblast.lib patching file c++/src/algo/blast/blastinput/Makefile.blastinput.lib patching file c++/src/algo/dustmask/Makefile.xalgodustmask.lib patching file c++/src/connect/Makefile.xconnect.lib patching file c++/src/connect/ext/Makefile.xconnext.lib patching file c++/src/objects/blast/Makefile.blast.lib patching file c++/src/objects/blastxml/Makefile.blastxml.lib patching file c++/src/objects/entrez2/Makefile.entrez2.lib patching file c++/src/objects/entrez2/Makefile.entrez2cli.lib patching file c++/src/objects/scoremat/Makefile.scoremat.lib patching file c++/src/objects/seqedit/Makefile.seqedit.lib patching file c++/src/objects/submit/Makefile.submit.lib patching file c++/src/objmgr/util/Makefile.util.lib patching file c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib patching file c++/src/objtools/blast/services/Makefile.blast_services.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib patching file c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib patching file c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib patching file c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib patching file c++/src/util/compress/api/Makefile.compress.lib patching file c++/src/util/sequtil/Makefile.sequtil.lib patching file c++/src/corelib/Makefile.test_boost.lib patching file c++/src/corelib/Makefile.test_mt.lib patching file c++/src/objects/biblio/Makefile.biblio.lib patching file c++/src/objects/blastdb/Makefile.blastdb.lib patching file c++/src/objects/general/Makefile.general.lib patching file c++/src/objects/genomecoll/Makefile.genome_collection.lib patching file c++/src/objects/id1/Makefile.id1.lib patching file c++/src/objects/id2/Makefile.id2.lib patching file c++/src/objects/medline/Makefile.medline.lib patching file c++/src/objects/pub/Makefile.pub.lib patching file c++/src/objects/seq/Makefile.seq.lib patching file c++/src/objects/seqcode/Makefile.seqcode.lib patching file c++/src/objects/seqset/Makefile.seqset.lib patching file c++/src/objects/seqsplit/Makefile.seqsplit.lib patching file c++/src/serial/Makefile.serial.lib patching file c++/src/util/Makefile.util.lib patching file c++/src/util/xregexp/Makefile.xregexp.lib patching file c++/src/algo/segmask/Makefile.xalgosegmask.lib patching file c++/src/objmgr/split/Makefile.id2_split.lib patching file c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib patching file c++/src/algo/blast/Makefile.blast_macros.mk patching file c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Applying patch no_multiarch_rpath patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac Applying patch wrong_path_to_touch.patch patching file c++/src/build-system/Makefile.meta.in patching file c++/src/build-system/Makefile.mk.in patching file c++/src/build-system/NEWS patching file c++/src/build-system/configure.ac patching file c++/src/build-system/configure Applying patch fix_gcc47_errors patching file c++/include/connect/ncbi_conn_stream.hpp patching file c++/include/corelib/ncbiexpt.hpp patching file c++/include/corelib/ncbimisc.hpp patching file c++/include/corelib/ncbistl.hpp patching file c++/include/corelib/ncbistr.hpp patching file c++/include/serial/impl/stltypes.hpp patching file c++/include/serial/iterator.hpp patching file c++/include/util/bitset/bmfunc.h patching file c++/include/util/bitset/bmserial.h patching file c++/include/util/linkedset.hpp patching file c++/include/util/rangemap.hpp patching file c++/src/serial/stdtypes.cpp Applying patch use_pie_for_apps patching file c++/src/build-system/Makefile.app.in Now at patch use_pie_for_apps debian/rules override_dh_auto_configure make[1]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking build system type... armv7l-unknown-linux-gnueabihf checking host system type... armv7l-unknown-linux-gnueabihf checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc supports -Wl,-E... yes checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... 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type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... yes checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long double... yes checking size of long double... 8 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes 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supports __attribute__((destructor))... yes checking whether /usr/bin/gcc supports __attribute__((visibility("default")))... 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checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... -lrt checking for library containing cplus_demangle... no checking for nanosleep... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for reentrant Sybase libraries... no checking for Sybase in ... no checking for FreeTDS in ... no checking for mysql_config... no checking for Berkeley DB libraries in /BerkeleyDB... no checking for python... no checking for python2.3... no checking for python2.4... no checking for python2.5... no checking Boost version... 1_49 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -mt (autodetected) checking for Boost.Regex in /boost... no checking for Boost.Spirit in /boost... yes checking for Boost.Test in /boost... included-only checking for Boost.Threads in /boost... no checking for the NCBI C toolkit in ... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for FLTK in /fltk... no checking for wx-config... no checking for wxWidgets in /wxwidgets... no checking for FastCGI libraries in /fcgi-current... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories in /SP... no checking for ORBacus in /corba/OB-4.0.1... no checking for ICU in /icu... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for Xerces-C++... no checking for Xalan-C++... no checking for libsqlite3... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libungif... no checking for libgif... no checking for libXpm in .... no checking for freetype-config... no checking for libmagic... no checking for libcurl... no configure: looking for configurables below /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++... configure: ...done updating cache config.cache configure: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/config.status config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/zlib/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/bzip2/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/bitset/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/access/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mim/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medlars/Makefile config.status: creating 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creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test/Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/./Makefile config.status: creating /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib/ncbicfg.c is updated Platform not defined for Linux armv7l -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/3.7.1/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f 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-D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:722:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/corelib/ncbidiag.hpp:1732) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1567:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1630:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1655:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1687:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:2527:44: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/corelib/ncbiapp.hpp:339) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbistr.cpp -o ncbistr.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbistr.cpp:1820:8: note: the mangling of 'va_list' has changed in GCC 4.4 /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -shared -o libxncbi.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ldl -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxncbi.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxncbi.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxncbi.so ln -f .xncbi.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -shared -o libtest_mt.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtest_mt.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtest_mt.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libtest_mt.so ln -f .test_mt.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/corelib/test_boost.cpp -o test_boost.o /tmp/cck9S2dx.s: Assembler messages: /tmp/cck9S2dx.s:15491: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:15501: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:15518: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:19902: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:19912: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:19929: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:19986: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:19996: Warning: swp{b} use is deprecated for this architecture /tmp/cck9S2dx.s:20013: Warning: swp{b} use is deprecated for this architecture /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -shared -o libtest_boost.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O test_boost.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtest_boost.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtest_boost.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libtest_boost.so ln -f .test_boost.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[2]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[2]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util TMPL=util -w all make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 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-I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/ncbi_url.cpp -o ncbi_url.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -shared -o libxutil.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o util_misc.o ncbi_url.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm 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`export-headers'. /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -shared -o libxregexp.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxregexp.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxregexp.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxregexp.so ln -f .xregexp.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' make[2]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' make[2]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE 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-fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O -Wl,-E file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -lrt -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f project_tree_builder /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f project_tree_builder /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O LIBRARIES: build as dynamic by default FEATURES: GCC MT DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GNUTLS OPENSSL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 Boost.Regex Boost.Test Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW FLTK wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT Xerces Xalan SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType MAGIC CURL PROJECTS: enabled: cgi local_lbsm connext ncbi_crypt serial objects app algo disabled: bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build && make all_r or simply run make in the current directory Alternatively, cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build && make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' debian/rules override_dh_auto_build make[1]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' cd c++/BUILD/build && \ make -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" \ APP_LDFLAGS='-Wl,-E -fPIE -pie' make[2]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' /usr/bin/make -w -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' cd corelib/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=corelib sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd util/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' cd util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' cd serial/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=serial sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial TMPL=serial -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp -o stdtypes.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp:34: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp:1631:36: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp -o objistr.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp:46: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1163:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp:1791:76: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder_little_endian, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1175:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp:1791:76: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp -o objhook.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CReadObjectHook&, ncbi::CObjectIStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:241:37: warning: 'void ncbi::CObjectTypeInfo::SetGlobalReadHook(ncbi::CReadObjectHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:273) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CWriteObjectHook&, ncbi::CObjectOStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:258:38: warning: 'void ncbi::CObjectTypeInfo::SetGlobalWriteHook(ncbi::CWriteObjectHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:307) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CSkipObjectHook&, ncbi::CObjectIStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:275:37: warning: 'void ncbi::CObjectTypeInfo::SetGlobalSkipHook(ncbi::CSkipObjectHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:341) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CCopyObjectHook&, ncbi::CObjectStreamCopier*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:292:37: warning: 'void ncbi::CObjectTypeInfo::SetGlobalCopyHook(ncbi::CCopyObjectHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:375) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CReadClassMemberHook&, ncbi::CObjectIStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:312:39: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CWriteClassMemberHook&, ncbi::CObjectOStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:332:40: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalWriteHook(ncbi::CWriteClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:278) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CSkipClassMemberHook&, ncbi::CObjectIStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:352:39: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalSkipHook(ncbi::CSkipClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:287) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CCopyClassMemberHook&, ncbi::CObjectStreamCopier*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:372:39: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalCopyHook(ncbi::CCopyClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:296) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CReadChoiceVariantHook&, ncbi::CObjectIStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:392:40: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalReadHook(ncbi::CReadChoiceVariantHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:350) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CWriteChoiceVariantHook&, ncbi::CObjectOStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:412:41: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalWriteHook(ncbi::CWriteChoiceVariantHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:359) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CSkipChoiceVariantHook&, ncbi::CObjectIStream*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:432:40: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalSkipHook(ncbi::CSkipChoiceVariantHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:368) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CCopyChoiceVariantHook&, ncbi::CObjectStreamCopier*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:452:40: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalCopyHook(ncbi::CCopyChoiceVariantHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:377) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrasn.cpp -o objostrasn.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objostrasn.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrasn.cpp:37: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrasn.cpp:312:16: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrasnb.cpp -o objostrasnb.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objostrasnb.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrasnb.cpp:37: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrasnb.cpp:486:16: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrxml.cpp -o objostrxml.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objostrxml.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrxml.cpp:37: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrxml.cpp:761:16: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrxml.cpp -o objistrxml.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrxml.cpp: In member function 'virtual std::string ncbi::CObjectIStreamXml::ReadFileHeader()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrxml.cpp:525:33: warning: variable 'docType' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrjson.cpp -o objistrjson.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objistrjson.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrjson.cpp:37: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/objistrjson.cpp:511:16: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/pathhook.cpp -o pathhook.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -shared -o libxser.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxser.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxser.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxser.so ln -f .xser.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xser.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' cd serial/datatool/ && /usr/bin/make -w APP_PROJ=datatool LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool TMPL=datatool -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -c 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-fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O -Wl,-E -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxutil -lxncbi -lrt -lm -lpthread -o datatool /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f datatool /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f datatool /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh general all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' cd objects/general/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=general sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general TMPL=general -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp -o uoconv.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1163:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:96:71: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder_little_endian, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1175:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:96:71: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:187:20: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -shared -o libgeneral.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libgeneral.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libgeneral.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libgeneral.so ln -f .general.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.general.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh biblio all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' cd objects/biblio/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=biblio sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio TMPL=biblio -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -shared -o libbiblio.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libbiblio.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libbiblio.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libbiblio.so ln -f .biblio.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.biblio.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' cd algo/blast/composition_adjustment/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' cd algo/blast/composition_adjustment/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=composition_adjustment sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/redo_alignment.c:184:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/redo_alignment.c:199:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libcomposition_adjustment.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libcomposition_adjustment.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libcomposition_adjustment.so ln -f .composition_adjustment.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' cd util/tables/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' cd util/tables/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=tables sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/tables TMPL=tables -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -shared -o libtables.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtables.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtables.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libtables.so ln -f .tables.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.tables.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' cd connect/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' cd connect/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnect sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect TMPL=xconnect -w all /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/.#lock-map. make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector 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-Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -shared -o libxconnect.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_lbsmd.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lnsl -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxconnect.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxconnect.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxconnect.so ln -f .xconnect.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' cd algo/blast/core/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' cd algo/blast/core/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core TMPL=blast -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_hits.c:3206:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nascan.c: In function 's_BlastNaScanSubject_8_4': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nascan.c:110:10: warning: variable 'lut_word_length' set but not used [-Wunused-but-set-variable] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c: In function 's_BlastGumbelBlkNew': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c: At top level: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector 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/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -shared -o libblast.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libblast.so ln -f .blast.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.blast.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' cd objects/medline/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh medline all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' cd objects/medline/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=medline sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline TMPL=medline -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -shared -o libmedline.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libmedline.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libmedline.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libmedline.so ln -f .medline.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.medline.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh pub all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' cd objects/pub/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=pub sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub TMPL=pub -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -shared -o libpub.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libpub.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libpub.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libpub.so ln -f .pub.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.pub.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' cd objects/seqcode/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqcode all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' cd objects/seqcode/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqcode sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode TMPL=seqcode -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -shared -o libseqcode.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqcode.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqcode.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqcode.so ln -f .seqcode.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' cd util/sequtil/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' cd util/sequtil/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=sequtil sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil TMPL=sequtil -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::CSeqConvert_imp::x_Convert4naTo2na(const char*, ncbi::TSeqPos, ncbi::TSeqPos, char*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp:702:25: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp:730:25: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp:736:25: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -shared -o libsequtil.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libsequtil.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libsequtil.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libsequtil.so ln -f .sequtil.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' cd objects/seq/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -w all make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' status=0 ; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status Platform not defined for Linux armv7l -- please fix me /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqalign' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqalign' Platform not defined for Linux armv7l -- please fix me /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqblock' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqblock' Platform not defined for Linux armv7l -- please fix me /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub/pub.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat' Platform not defined for Linux armv7l -- please fix me /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc' Platform not defined for Linux armv7l -- please fix me /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqres' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqres' Platform not defined for Linux armv7l -- please fix me /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqtable' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqtable' make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seq all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/pub/pub.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' cd objects/seq/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seq sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq TMPL=seq -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqalign__.cpp -o seqalign__.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In static member function 'static void ncbi::objects::CDenseSegReserveStartsHook::SetGlobalHook()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1550:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In static member function 'static void ncbi::objects::CDenseSegReserveLensHook::SetGlobalHook()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1580:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In static member function 'static void ncbi::objects::CDenseSegReserveStrandsHook::SetGlobalHook()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1610:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:7:0, from seqalign__.cpp:1: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Score.cpp: In static member function 'static void ncbi::objects::CReadSharedScoreIdHook::SetGlobalHook()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Score.cpp:80:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1352:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1356:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objects/seqalign/Std_seg.hpp:79) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1361:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1335) [-Wdeprecated-declarations] In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:17:0, from seqalign__.cpp:1: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Spliced_seg.cpp: In member function 'void ncbi::objects::CSpliced_seg::Validate(bool) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Spliced_seg.cpp:183:14: warning: variable 'genomic_plus' set but not used [-Wunused-but-set-variable] In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:19:0, from seqalign__.cpp:1: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Std_seg.cpp: In member function 'void ncbi::objects::CStd_seg::SwapRows(int, int)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Std_seg.cpp:131:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Std_seg.cpp:131:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqfeat__.cpp -o seqfeat__.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In function 'void ncbi::objects::s_ProcessInstitutionCollectionCodeLine(const ncbi::CTempString&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqfeat/OrgMod.cpp:138:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -shared -o libseq.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseq.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseq.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libseq.so ln -f .seq.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.seq.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh blastdb all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' cd objects/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb TMPL=blastdb -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -shared -o libblastdb.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastdb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastdb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastdb.so ln -f .blastdb.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' cd util/creaders/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' cd util/creaders/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=creaders sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/creaders TMPL=creaders -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -shared -o libcreaders.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libcreaders.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libcreaders.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libcreaders.so ln -f .creaders.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.creaders.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' cd objects/genomecoll/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh genome_collection all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh gencoll_client all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' cd objects/genomecoll/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=genome_collection sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll TMPL=genome_collection -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -shared -o libgenome_collection.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libgenome_collection.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libgenome_collection.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libgenome_collection.so ln -f .genome_collection.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' cd objects/seqset/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqset all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' cd objects/seqset/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqset sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset TMPL=seqset -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -shared -o libseqset.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqset.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqset.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqset.so ln -f .seqset.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.seqset.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh scoremat all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' cd objects/scoremat/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=scoremat sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat TMPL=scoremat -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -shared -o libscoremat.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libscoremat.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libscoremat.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libscoremat.so ln -f .scoremat.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' cd objects/seqedit/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqedit all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' cd objects/seqedit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqedit sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit TMPL=seqedit -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -shared -o libseqedit.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqedit.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqedit.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqedit.so ln -f .seqedit.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' cd objects/seqsplit/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqsplit all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' cd objects/seqsplit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqsplit sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit TMPL=seqsplit -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -shared -o libseqsplit.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqsplit.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqsplit.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqsplit.so ln -f .seqsplit.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' cd objmgr/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' cd objmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=objmgr sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr TMPL=objmgr -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/tse_info.cpp -o tse_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT 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-D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -shared -o libxobjmgr.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjmgr.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjmgr.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjmgr.so ln -f .xobjmgr.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqdb sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'std::list > ncbi::CSeqDBVol::x_GetTaxonomy(int, int, ncbi::CRef, ncbi::CSeqDBLockHold&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1058:10: warning: variable 'found' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -shared -o libseqdb.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqdb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqdb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqdb.so ln -f .seqdb.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' cd objects/submit/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh submit all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' cd objects/submit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=submit sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit TMPL=submit -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -shared -o libsubmit.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libsubmit.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libsubmit.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libsubmit.so ln -f .submit.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.submit.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' cd objtools/readers/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' cd objtools/readers/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjread sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers TMPL=xobjread -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryRmo()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:227:50: warning: 'static ncbi::objects::CRmReader* ncbi::objects::CRmReader::OpenReader(ncbi::CNcbiIstream&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/readers/rm_reader.hpp:750) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:228:32: warning: 'void ncbi::objects::CRmReader::Read(ncbi::CRef, ncbi::objects::IRmReaderFlags::TFlags, size_t)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/readers/rm_reader.hpp:752) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:229:35: warning: 'static void ncbi::objects::CRmReader::CloseReader(ncbi::objects::CRmReader*)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/readers/rm_reader.hpp:751) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryAgp()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:244:33: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/readers/agp_read.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/readers/agp_read.hpp:60) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/readers/agp_read.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::Read(bool)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/aln_reader.cpp:180:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta.cpp -o fasta.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta.cpp: In member function 'ncbi::CRef ncbi::objects::CFastaReader::ReadAlignedSet(int)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta.cpp:873:75: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/getfeature.cpp: In member function 'std::vector& ncbi::objects::CGetFeature::GetFeatInfo(const string&, const ncbi::CRange&, ncbi::objects::SFeatInfo*&, ncbi::objects::SFeatInfo*&, int)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/getfeature.cpp:82:14: warning: variable 'has_feature' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/wiggle_data.cpp -o wiggle_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_ApplyMods(ncbi::CAutoInitRef&, ncbi::CTempString)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/source_mod_parser.cpp:517:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -shared -o libxobjread.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O format_guess_ex.o acc_pattern.o agp_read.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_data.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lpub -lgeneral -lxser -lcreaders -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjread.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjread.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjread.so ln -f .xobjread.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' cd objmgr/util/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' cd objmgr/util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util TMPL=util -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/weight.cpp -o weight.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/weight.cpp: In function 'double ncbi::objects::GetProteinWeight(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CSeq_loc*, ncbi::objects::TGetProteinWeight)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/weight.cpp:137:55: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp -o sequence.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CConstRef ncbi::objects::sequence::GetBestMrnaForCds(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:1186:60: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:1204:63: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CConstRef ncbi::objects::sequence::GetBestCdsForMrna(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:1479:63: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::objects::CBioseq_Handle ncbi::objects::sequence::GetNucleotideParent(const ncbi::objects::CBioseq_Handle&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:2221:64: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In static member function 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:3509:65: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/seqtitle.cpp: In function 'bool ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq&, std::string*, ncbi::objects::sequence::TGetTitleFlags)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/seqtitle.cpp:654:16: warning: variable 'search_depth' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -shared -o libxobjutil.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjutil.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjutil.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjutil.so ln -f .xobjutil.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' cd objtools/seqmasks_io/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' cd objtools/seqmasks_io/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqmasks_io sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqmasks_io.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqmasks_io.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqmasks_io.so ln -f .seqmasks_io.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' cd algo/blast/dbindex/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' cd algo/blast/dbindex/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgoblastdbindex sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex.cpp:98:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgoblastdbindex.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgoblastdbindex.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgoblastdbindex.so ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' cd algo/dustmask/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' cd algo/dustmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgodustmask sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/dustmask TMPL=xalgodustmask -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgodustmask.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgodustmask.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgodustmask.so ln -f .xalgodustmask.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' cd algo/winmask/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' cd algo/winmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgowinmask sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask TMPL=xalgowinmask -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt.cpp: In member function 'virtual void ncbi::CSeqMaskerOstatOpt::doFinalize()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:277:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:111:21: warning: 'unit_size' may be used uninitialized in this function [-Wuninitialized] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp: In member function 'virtual void ncbi::CSeqMaskerOstatOptBin::write_out(const ncbi::CSeqMaskerOstatOpt::params&) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:74:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgowinmask.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgowinmask.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgowinmask.so ln -f .xalgowinmask.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' cd objects/blast/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh blast all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast TMPL=blast -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -shared -o libxnetblast.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxnetblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxnetblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxnetblast.so ln -f .xnetblast.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xnetblastcli sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `all'. /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast TMPL=xnetblastcli -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxnetblastcli.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxnetblastcli.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxnetblastcli.so ln -f .xnetblastcli.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd algo/blast/api/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' cd algo/blast/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblast sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api TMPL=xblast -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux.cpp: In function 'ncbi::CRef ncbi::blast::TSeqLocVector2Bioseqs(const TSeqLocVector&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux.cpp:1056:69: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_objmgr_tools.cpp: In member function 'virtual std::string ncbi::blast::CBlastQuerySourceOM::GetTitle(int) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_objmgr_tools.cpp:354:55: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_impl.cpp: In member function 'void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function 'void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_aux_priv.cpp:472:41: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_search.cpp -o local_search.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_search.cpp: In member function 'virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_search.cpp:171:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp: In function 'ncbi::CRef ncbi::blast::s_QueryVectorToBioseqSet(const ncbi::blast::CBlastQueryVector&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp:73:61: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp: In function 'ncbi::CRef ncbi::blast::s_TSeqLocVectorToBioseqSet(const TSeqLocVector*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp:102:57: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp: In member function 'ncbi::CRef ncbi::blast::CLocalRPSBlast::Run()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp:379:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp: In member function 'ncbi::CRef ncbi::blast::CLocalRPSBlast::RunThreadedSearch()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp:412:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -shared -o libxblast.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqdb -lxobjread -lxobjutil -lxobjmgr -lxnetblastcli -lxnetblast -lscoremat -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxblast.so ln -f .xblast.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xblast.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' cd objtools/blast/services/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' cd objtools/blast/services/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_services sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/services TMPL=blast_services -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -shared -o libblast_services.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblast_services.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblast_services.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libblast_services.so ln -f .blast_services.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=gene_info sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -shared -o libgene_info.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libgene_info.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libgene_info.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libgene_info.so ln -f .gene_info.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' cd objects/id1/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1 && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh id1 all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' cd objects/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id1 sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1 TMPL=id1 -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -shared -o libid1.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libid1.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libid1.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libid1.so ln -f .id1.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.id1.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' cd objects/id2/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2 && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh id2 all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2' /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' cd objects/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2 sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2 TMPL=id2 -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -shared -o libid2.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libid2.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libid2.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libid2.so ln -f .id2.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.id2.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' cd util/compress/api/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' cd util/compress/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=compress sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api TMPL=compress -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/util/compress/api/tar.cpp -o tar.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -shared -o libxcompress.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxcompress.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxcompress.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxcompress.so ln -f .xcompress.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/split_parser.cpp -o split_parser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader.a ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader-static.dep /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lid2 -lseqsplit -lid1 -lseqset -lseq -lgeneral -lxser -lxconnect -lxcompress -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader.so ln -f .ncbi_xreader.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_cache sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_cache.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_cache.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_cache.a ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_cache.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_cache.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_cache.so ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id1.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id1.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id1.a ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid1 -lseq -lgeneral -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id1.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id1.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id1.so ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id2.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id2.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id2.a ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid2 -lseqsplit -lseq -lxser -lxconnect -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id2.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id2.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id2.so ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function 'virtual ncbi::objects::CDataLoader::TTSE_Lock ncbi::objects::CGBDataLoader::ResolveConflict(const ncbi::objects::CSeq_id_Handle&, const TTSE_LockSet&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbloader.cpp:848:18: warning: variable 'conflict' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_genbank.a ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader_id2 -lncbi_xreader_id1 -lncbi_xreader_cache -lncbi_xreader -lxobjmgr -lseq -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_genbank.so ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' cd objects/taxon1/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1 && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh taxon1 all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1' /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' cd objects/taxon1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=taxon1 sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1 TMPL=taxon1 -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -shared -o libtaxon1.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtaxon1.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtaxon1.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libtaxon1.so ln -f .taxon1.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' cd objtools/alnmgr/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' cd objtools/alnmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=alnmgr sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr TMPL=alnmgr -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/aln_stats.hpp:278:13: instantiated from 'size_t ncbi::CAlnStats<_TAlnIdVec>::x_AddId(const TAlnSeqIdIRef&, size_t, size_t) [with _TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >, size_t = unsigned int, ncbi::TAlnSeqIdIRef = ncbi::CIRef]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/aln_stats.hpp:83:21: instantiated from 'ncbi::CAlnStats<_TAlnIdVec>::CAlnStats(const TAlnIdVec&) [with _TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >, ncbi::CAlnStats<_TAlnIdVec>::TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >]' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_generators.cpp:999:40: instantiated from here /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmap.cpp:1473:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:78:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:195:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:197:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:199:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:141:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:1209:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wuninitialized] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp:309:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp:86:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp:136:80: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp:300:80: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/score_builder_base.cpp: In function 'void ncbi::s_GetSplicedSegIdentityMismatch(ncbi::objects::CScope&, const ncbi::objects::CSeq_align&, const ncbi::CRangeCollection&, int*, int*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/score_builder_base.cpp:228:31: warning: variable 'is_match' set but not used [-Wunused-but-set-variable] /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -shared -o libxalnmgr.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalnmgr.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalnmgr.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalnmgr.so ln -f .xalnmgr.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' cd cgi/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' cd cgi/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=cgi sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi TMPL=cgi -w all /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/.#lock-map. make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -shared -o libxcgi.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxcgi.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxcgi.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxcgi.so ln -f .xcgi.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' cd html/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' cd html/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=html sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html TMPL=html -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/node.cpp -o node.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/html.cpp -o html.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/page.cpp -o page.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/components.cpp -o components.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/jsmenu.cpp -o jsmenu.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -shared -o libxhtml.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O node.o html.o htmlhelper.o page.o pager.o selection.o components.o jsmenu.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxhtml.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxhtml.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxhtml.so ln -f .xhtml.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' cd objtools/align_format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' cd objtools/align_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=align_format sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format TMPL=align_format -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp -o showalign.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp: In member function 'std::string ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(ncbi::align_format::CDisplaySeqalign::SAlnRowInfo*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp:1698:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::x_GetFeatureInfo(ncbi::align_format::CDisplaySeqalign::TSAlnFeatureInfoList&, ncbi::objects::CScope&, ncbi::objects::CSeqFeatData_Base::E_Choice, int, std::string&, std::list > >&, std::list&, bool) const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp:2655:57: warning: 'void ncbi::objects::feature::GetLabel(const ncbi::objects::CSeq_feat&, std::string*, ncbi::objects::feature::ELabelType, ncbi::objects::CScope*)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/util/feature.hpp:92) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -shared -o libalign_format.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libalign_format.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libalign_format.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libalign_format.so ln -f .align_format.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.align_format.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb_format sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -shared -o libblastdb_format.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastdb_format.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastdb_format.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastdb_format.so ln -f .blastdb_format.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_blastdb.so ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/blastinput/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/blastinput/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastinput sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput TMPL=blastinput -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -shared -o libblastinput.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lseqdb -lxobjread -lxobjmgr -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastinput.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastinput.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastinput.so ln -f .blastinput.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' cd objects/blastxml/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh blastxml all File blastxml.module not found. Using defaults... Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' cd objects/blastxml/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastxml sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml TMPL=blastxml -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -shared -o libblastxml.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastxml.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastxml.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastxml.so ln -f .blastxml.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' cd objects/entrez2/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2 && /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh entrez2 all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ DATATOOL=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2' /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++ -opm /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2 sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2 TMPL=entrez2 -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -shared -o libentrez2.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libentrez2.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libentrez2.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libentrez2.so ln -f .entrez2.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2cli sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `all'. /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2 TMPL=entrez2cli -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -shared -o libentrez2cli.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lentrez2 -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libentrez2cli.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libentrez2cli.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libentrez2cli.so ln -f .entrez2cli.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=test_boost sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd algo/blast/format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' cd algo/blast/format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblastformat sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format TMPL=xblastformat -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp:133:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp:380:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o In file included from /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp:133:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -shared -o libxblastformat.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastfmtutil.o blastxml_format.o blast_format.o data4xmlformat.o build_archive.o vecscreen_run.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxblast -lalign_format -lxalnmgr -lxobjmgr -lxnetblast -lscoremat -lblastxml -lseq -lgeneral -lxser -ltables -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxblastformat.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxblastformat.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxblastformat.so ln -f .xblastformat.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' cd connect/ext/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' /usr/bin/make[4] (Makefile.connext.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnext.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' cd connect/ext/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnext sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext TMPL=xconnext -w all /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnext to make__ext_common per /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext/.#lock-map. make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_iprange.c -o ncbi_iprange.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.so .libxconnext.so.stamp /usr/bin/g++ -shared -o libxconnext.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_iprange.o ncbi_localnet.o ncbi_dblb_svcmapper.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxconnect -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxconnext.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxconnext.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxconnext.so ln -f .xconnext.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xconnext.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w APP_PROJ=blastinput_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadProteinWithGaps::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:422:58: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /tmp/ccyrTrHP.s: Assembler messages: /tmp/ccyrTrHP.s:4852: Warning: swp{b} use is deprecated for this architecture /tmp/ccyrTrHP.s:4861: Warning: swp{b} use is deprecated for this architecture /tmp/ccyrTrHP.s:4878: Warning: swp{b} use is deprecated for this architecture /tmp/ccyrTrHP.s:4923: Warning: swp{b} use is deprecated for this architecture /tmp/ccyrTrHP.s:4932: Warning: swp{b} use is deprecated for this architecture /tmp/ccyrTrHP.s:4949: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::RetrieveFromBlastDb_TestSequenceData::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:160:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::RetrieveFromDefaultBlastDb_NoNcbirc::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:193:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::RetrieveFromBlastDbOnly_TestSequenceDataWithAccession::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:236:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromBlastDb_TestSequenceData::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:272:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromNonStandardBlastDb_Config_TestSequenceData::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:302:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromNonStandardBlastDb_ForcedDb_TestSequenceData::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:335:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromGenbank_TestSequenceData::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:361:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_UseNoDataLoaders::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:384:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /tmp/ccR5Q9dS.s: Assembler messages: /tmp/ccR5Q9dS.s:1379: Warning: swp{b} use is deprecated for this architecture /tmp/ccR5Q9dS.s:1389: Warning: swp{b} use is deprecated for this architecture /tmp/ccR5Q9dS.s:1406: Warning: swp{b} use is deprecated for this architecture /tmp/ccR5Q9dS.s:1470: Warning: swp{b} use is deprecated for this architecture /tmp/ccR5Q9dS.s:1480: Warning: swp{b} use is deprecated for this architecture /tmp/ccR5Q9dS.s:1497: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o blastinput_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastinput_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastinput_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w APP_PROJ=makeindex LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function 'virtual int ncbi::CMkIndexApplication::Run()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:180:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lcreaders -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o makembindex /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f makembindex /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f makembindex /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/makembindex make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/igblast/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' cd algo/blast/igblast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=igblast sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/igblast TMPL=igblast -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -shared -o libigblast.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libigblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libigblast.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libigblast.so ln -f .igblast.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.igblast.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' cd objtools/simple/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' cd objtools/simple/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjsimple sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/simple TMPL=xobjsimple -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -shared -o libxobjsimple.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjsimple.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjsimple.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjsimple.so ln -f .xobjsimple.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/api/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w APP_PROJ=blast_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function 'Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:258:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /tmp/ccEzuqBo.s: Assembler messages: /tmp/ccEzuqBo.s:789: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:798: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:815: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:860: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:869: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:886: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1219: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1228: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1245: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1348: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1357: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1374: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1477: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1486: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1503: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1606: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1615: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1632: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1753: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1762: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1779: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1900: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1909: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:1926: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2047: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2056: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2073: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2194: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2203: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2220: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2341: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2350: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2436: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2557: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2566: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2583: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2704: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2713: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2730: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2851: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2860: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2877: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:2998: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3008: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3025: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3427: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3435: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3452: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3498: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3506: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3523: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3569: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3577: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3594: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3640: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3648: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3665: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3711: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3719: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3736: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3782: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3790: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3807: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3853: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3861: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3878: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3924: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3932: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3949: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:3995: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4003: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4020: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4065: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4074: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4091: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4136: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4144: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4161: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4207: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4215: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4232: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4278: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4286: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:4303: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5419: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5428: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5445: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5559: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5568: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5585: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5724: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5733: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5750: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5845: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5855: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5872: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5966: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5976: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:5993: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6039: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6049: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6066: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6616: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6625: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6642: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6755: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6764: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6781: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6895: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6904: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:6921: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7035: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7044: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7061: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7174: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7184: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7201: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7383: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7392: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7409: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7457: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7467: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7484: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7531: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7540: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7557: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7606: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7615: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7632: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7714: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7723: Warning: swp{b} use is deprecated for this architecture /tmp/ccEzuqBo.s:7740: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /tmp/ccJhQsHW.s: Assembler messages: /tmp/ccJhQsHW.s:3769: Warning: swp{b} use is deprecated for this architecture /tmp/ccJhQsHW.s:3778: Warning: swp{b} use is deprecated for this architecture /tmp/ccJhQsHW.s:3795: Warning: swp{b} use is deprecated for this architecture /tmp/ccJhQsHW.s:3840: Warning: swp{b} use is deprecated for this architecture /tmp/ccJhQsHW.s:3849: Warning: swp{b} use is deprecated for this architecture /tmp/ccJhQsHW.s:3866: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /tmp/ccPJMAuz.s: Assembler messages: /tmp/ccPJMAuz.s:1107: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1116: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1133: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1178: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1187: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1204: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1766: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1775: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1792: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1901: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1911: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:1928: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2038: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2048: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2065: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2112: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2121: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2138: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2646: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2655: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2672: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2786: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2795: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2812: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2920: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2929: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:2946: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3132: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3141: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3158: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3268: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3278: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3295: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3400: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3409: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3426: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3477: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3486: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3503: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3780: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3789: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3806: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3853: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3863: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3880: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3927: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3936: Warning: swp{b} use is deprecated for this architecture /tmp/ccPJMAuz.s:3953: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:6: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1246:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1250:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1255:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1257:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1261:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1263:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1267:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1269:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1273:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1275:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1313:1: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /tmp/ccM0w3tL.s: Assembler messages: /tmp/ccM0w3tL.s:2814: Warning: swp{b} use is deprecated for this architecture /tmp/ccM0w3tL.s:2823: Warning: swp{b} use is deprecated for this architecture /tmp/ccM0w3tL.s:2840: Warning: swp{b} use is deprecated for this architecture /tmp/ccM0w3tL.s:2885: Warning: swp{b} use is deprecated for this architecture /tmp/ccM0w3tL.s:2894: Warning: swp{b} use is deprecated for this architecture /tmp/ccM0w3tL.s:2911: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /tmp/ccp6wCzq.s: Assembler messages: /tmp/ccp6wCzq.s:3014: Warning: swp{b} use is deprecated for this architecture /tmp/ccp6wCzq.s:3023: Warning: swp{b} use is deprecated for this architecture /tmp/ccp6wCzq.s:3040: Warning: swp{b} use is deprecated for this architecture /tmp/ccp6wCzq.s:3085: Warning: swp{b} use is deprecated for this architecture /tmp/ccp6wCzq.s:3094: Warning: swp{b} use is deprecated for this architecture /tmp/ccp6wCzq.s:3111: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /tmp/ccIv7GCc.s: Assembler messages: /tmp/ccIv7GCc.s:1811: Warning: swp{b} use is deprecated for this architecture /tmp/ccIv7GCc.s:1821: Warning: swp{b} use is deprecated for this architecture /tmp/ccIv7GCc.s:1838: Warning: swp{b} use is deprecated for this architecture /tmp/ccIv7GCc.s:1903: Warning: swp{b} use is deprecated for this architecture /tmp/ccIv7GCc.s:1913: Warning: swp{b} use is deprecated for this architecture /tmp/ccIv7GCc.s:1930: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /tmp/cczLqEo6.s: Assembler messages: /tmp/cczLqEo6.s:3500: Warning: swp{b} use is deprecated for this architecture /tmp/cczLqEo6.s:3509: Warning: swp{b} use is deprecated for this architecture /tmp/cczLqEo6.s:3526: Warning: swp{b} use is deprecated for this architecture /tmp/cczLqEo6.s:3571: Warning: swp{b} use is deprecated for this architecture /tmp/cczLqEo6.s:3580: Warning: swp{b} use is deprecated for this architecture /tmp/cczLqEo6.s:3597: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /tmp/cchLzuwk.s: Assembler messages: /tmp/cchLzuwk.s:1068: Warning: swp{b} use is deprecated for this architecture /tmp/cchLzuwk.s:1078: Warning: swp{b} use is deprecated for this architecture /tmp/cchLzuwk.s:1095: Warning: swp{b} use is deprecated for this architecture /tmp/cchLzuwk.s:1159: Warning: swp{b} use is deprecated for this architecture /tmp/cchLzuwk.s:1169: Warning: swp{b} use is deprecated for this architecture /tmp/cchLzuwk.s:1186: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /tmp/ccLzqJ5p.s: Assembler messages: /tmp/ccLzqJ5p.s:1224: Warning: swp{b} use is deprecated for this architecture /tmp/ccLzqJ5p.s:1233: Warning: swp{b} use is deprecated for this architecture /tmp/ccLzqJ5p.s:1250: Warning: swp{b} use is deprecated for this architecture /tmp/ccLzqJ5p.s:1295: Warning: swp{b} use is deprecated for this architecture /tmp/ccLzqJ5p.s:1304: Warning: swp{b} use is deprecated for this architecture /tmp/ccLzqJ5p.s:1321: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /tmp/ccL1UZOC.s: Assembler messages: /tmp/ccL1UZOC.s:1418: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1427: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1444: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1489: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1498: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1515: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1677: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1686: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1703: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1818: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1827: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1844: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1953: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1963: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:1980: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:2029: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:2038: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:2055: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3015: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3024: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3041: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3153: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3162: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3179: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3288: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3298: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3315: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3364: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3373: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3390: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3831: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3840: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3857: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3918: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3927: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:3944: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6004: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6013: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6030: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6179: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6188: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6205: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6354: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6363: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6380: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6672: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6681: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6698: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6798: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6807: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6824: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6876: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6885: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6902: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6955: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6964: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:6981: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:7034: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:7043: Warning: swp{b} use is deprecated for this architecture /tmp/ccL1UZOC.s:7060: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /tmp/ccaOKfez.s: Assembler messages: /tmp/ccaOKfez.s:1085: Warning: swp{b} use is deprecated for this architecture /tmp/ccaOKfez.s:1095: Warning: swp{b} use is deprecated for this architecture /tmp/ccaOKfez.s:1112: Warning: swp{b} use is deprecated for this architecture /tmp/ccaOKfez.s:1177: Warning: swp{b} use is deprecated for this architecture /tmp/ccaOKfez.s:1187: Warning: swp{b} use is deprecated for this architecture /tmp/ccaOKfez.s:1204: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /tmp/ccEg9vov.s: Assembler messages: /tmp/ccEg9vov.s:1279: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:1288: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:1305: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:1350: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:1359: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:1376: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2026: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2035: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2052: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2207: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2216: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2233: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2389: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2398: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2415: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2566: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2575: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2592: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2745: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2754: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2771: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2920: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2929: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:2946: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3108: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3118: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3135: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3185: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3194: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3211: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3265: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3274: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3291: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3345: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3354: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3371: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3425: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3434: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3451: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3505: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3514: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:3531: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:4756: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:4765: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:4782: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:4937: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:4946: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:4963: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5119: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5128: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5145: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5296: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5305: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5322: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5476: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5485: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5502: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5653: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5662: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5679: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5901: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5910: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:5927: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6076: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6085: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6102: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6236: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6246: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6263: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6313: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6322: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6339: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6393: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6402: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6419: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6473: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6482: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6499: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6553: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6562: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6579: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6633: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6642: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6659: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6713: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6722: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6739: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6793: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6802: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:6819: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8266: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8276: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8293: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8375: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8385: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8402: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8919: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8929: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:8946: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9028: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9038: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9055: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9597: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9606: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9623: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9780: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9789: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9806: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9918: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9927: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:9944: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10054: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10063: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10080: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10231: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10240: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10257: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10409: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10418: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10435: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10587: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10596: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10613: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10836: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10845: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10862: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:10998: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11008: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11025: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11075: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11084: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11101: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11154: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11163: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11180: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11233: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11242: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11259: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11312: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11321: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11338: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11748: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11757: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11774: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11825: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11834: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11851: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11902: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11911: Warning: swp{b} use is deprecated for this architecture /tmp/ccEg9vov.s:11928: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:440:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /tmp/ccrYROzs.s: Assembler messages: /tmp/ccrYROzs.s:1909: Warning: swp{b} use is deprecated for this architecture /tmp/ccrYROzs.s:1919: Warning: swp{b} use is deprecated for this architecture /tmp/ccrYROzs.s:1936: Warning: swp{b} use is deprecated for this architecture /tmp/ccrYROzs.s:2001: Warning: swp{b} use is deprecated for this architecture /tmp/ccrYROzs.s:2011: Warning: swp{b} use is deprecated for this architecture /tmp/ccrYROzs.s:2028: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /tmp/ccSbpV2N.s: Assembler messages: /tmp/ccSbpV2N.s:1124: Warning: swp{b} use is deprecated for this architecture /tmp/ccSbpV2N.s:1134: Warning: swp{b} use is deprecated for this architecture /tmp/ccSbpV2N.s:1151: Warning: swp{b} use is deprecated for this architecture /tmp/ccSbpV2N.s:1215: Warning: swp{b} use is deprecated for this architecture /tmp/ccSbpV2N.s:1225: Warning: swp{b} use is deprecated for this architecture /tmp/ccSbpV2N.s:1242: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /tmp/ccz5IyBp.s: Assembler messages: /tmp/ccz5IyBp.s:1638: Warning: swp{b} use is deprecated for this architecture /tmp/ccz5IyBp.s:1647: Warning: swp{b} use is deprecated for this architecture /tmp/ccz5IyBp.s:1664: Warning: swp{b} use is deprecated for this architecture /tmp/ccz5IyBp.s:1709: Warning: swp{b} use is deprecated for this architecture /tmp/ccz5IyBp.s:1718: Warning: swp{b} use is deprecated for this architecture /tmp/ccz5IyBp.s:1735: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /tmp/ccUcTnkh.s: Assembler messages: /tmp/ccUcTnkh.s:1023: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1032: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1049: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1094: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1103: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1120: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1434: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1443: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1460: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1612: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1622: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1639: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1692: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1700: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1717: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1890: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1899: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:1916: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2234: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2243: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2260: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2431: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2440: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2457: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2607: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2616: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2633: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2707: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2715: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2732: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2778: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2786: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2803: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2974: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2982: Warning: swp{b} use is deprecated for this architecture /tmp/ccUcTnkh.s:2999: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /tmp/ccEV27ua.s: Assembler messages: /tmp/ccEV27ua.s:1607: Warning: swp{b} use is deprecated for this architecture /tmp/ccEV27ua.s:1617: Warning: swp{b} use is deprecated for this architecture /tmp/ccEV27ua.s:1634: Warning: swp{b} use is deprecated for this architecture /tmp/ccEV27ua.s:1699: Warning: swp{b} use is deprecated for this architecture /tmp/ccEV27ua.s:1709: Warning: swp{b} use is deprecated for this architecture /tmp/ccEV27ua.s:1726: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /tmp/ccLQIg6B.s: Assembler messages: /tmp/ccLQIg6B.s:1020: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1029: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1046: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1091: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1100: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1117: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1410: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1419: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1436: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1638: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1647: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1664: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1840: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1849: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:1866: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2015: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2024: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2041: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2197: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2206: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2223: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2330: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2340: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2357: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2440: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2448: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2465: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2565: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2573: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2590: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2636: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2644: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2661: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2905: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2913: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:2930: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:3079: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:3087: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:3104: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:3151: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:3160: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:3177: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:4725: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:4734: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:4751: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:4931: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:4940: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:4957: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5111: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5120: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5137: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5492: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5501: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5518: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5625: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5634: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5651: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5797: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5806: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5823: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:5992: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6001: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6018: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6187: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6196: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6213: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6320: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6330: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6347: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6473: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6481: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6498: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6546: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6554: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6571: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6770: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6778: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6795: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6890: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6900: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6917: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6964: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6974: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:6991: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7184: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7194: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7211: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7282: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7291: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7308: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7359: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7368: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7385: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7596: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7606: Warning: swp{b} use is deprecated for this architecture /tmp/ccLQIg6B.s:7623: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /tmp/ccEoYkgA.s: Assembler messages: /tmp/ccEoYkgA.s:1484: Warning: swp{b} use is deprecated for this architecture /tmp/ccEoYkgA.s:1493: Warning: swp{b} use is deprecated for this architecture /tmp/ccEoYkgA.s:1510: Warning: swp{b} use is deprecated for this architecture /tmp/ccEoYkgA.s:1555: Warning: swp{b} use is deprecated for this architecture /tmp/ccEoYkgA.s:1564: Warning: swp{b} use is deprecated for this architecture /tmp/ccEoYkgA.s:1581: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /tmp/ccC3GjbA.s: Assembler messages: /tmp/ccC3GjbA.s:2464: Warning: swp{b} use is deprecated for this architecture /tmp/ccC3GjbA.s:2474: Warning: swp{b} use is deprecated for this architecture /tmp/ccC3GjbA.s:2491: Warning: swp{b} use is deprecated for this architecture /tmp/ccC3GjbA.s:2556: Warning: swp{b} use is deprecated for this architecture /tmp/ccC3GjbA.s:2566: Warning: swp{b} use is deprecated for this architecture /tmp/ccC3GjbA.s:2583: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /tmp/cc1Pk1MZ.s: Assembler messages: /tmp/cc1Pk1MZ.s:1283: Warning: swp{b} use is deprecated for this architecture /tmp/cc1Pk1MZ.s:1293: Warning: swp{b} use is deprecated for this architecture /tmp/cc1Pk1MZ.s:1310: Warning: swp{b} use is deprecated for this architecture /tmp/cc1Pk1MZ.s:1375: Warning: swp{b} use is deprecated for this architecture /tmp/cc1Pk1MZ.s:1385: Warning: swp{b} use is deprecated for this architecture /tmp/cc1Pk1MZ.s:1402: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /tmp/ccw55HcX.s: Assembler messages: /tmp/ccw55HcX.s:1400: Warning: swp{b} use is deprecated for this architecture /tmp/ccw55HcX.s:1410: Warning: swp{b} use is deprecated for this architecture /tmp/ccw55HcX.s:1427: Warning: swp{b} use is deprecated for this architecture /tmp/ccw55HcX.s:1491: Warning: swp{b} use is deprecated for this architecture /tmp/ccw55HcX.s:1501: Warning: swp{b} use is deprecated for this architecture /tmp/ccw55HcX.s:1518: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /tmp/ccYVcAHM.s: Assembler messages: /tmp/ccYVcAHM.s:2382: Warning: swp{b} use is deprecated for this architecture /tmp/ccYVcAHM.s:2392: Warning: swp{b} use is deprecated for this architecture /tmp/ccYVcAHM.s:2409: Warning: swp{b} use is deprecated for this architecture /tmp/ccYVcAHM.s:2473: Warning: swp{b} use is deprecated for this architecture /tmp/ccYVcAHM.s:2483: Warning: swp{b} use is deprecated for this architecture /tmp/ccYVcAHM.s:2500: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /tmp/ccBCPFw8.s: Assembler messages: /tmp/ccBCPFw8.s:1170: Warning: swp{b} use is deprecated for this architecture /tmp/ccBCPFw8.s:1180: Warning: swp{b} use is deprecated for this architecture /tmp/ccBCPFw8.s:1197: Warning: swp{b} use is deprecated for this architecture /tmp/ccBCPFw8.s:1262: Warning: swp{b} use is deprecated for this architecture /tmp/ccBCPFw8.s:1272: Warning: swp{b} use is deprecated for this architecture /tmp/ccBCPFw8.s:1289: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /tmp/ccfzbMtZ.s: Assembler messages: /tmp/ccfzbMtZ.s:1435: Warning: swp{b} use is deprecated for this architecture /tmp/ccfzbMtZ.s:1445: Warning: swp{b} use is deprecated for this architecture /tmp/ccfzbMtZ.s:1462: Warning: swp{b} use is deprecated for this architecture /tmp/ccfzbMtZ.s:1527: Warning: swp{b} use is deprecated for this architecture /tmp/ccfzbMtZ.s:1537: Warning: swp{b} use is deprecated for this architecture /tmp/ccfzbMtZ.s:1554: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /tmp/ccqUmufr.s: Assembler messages: /tmp/ccqUmufr.s:1235: Warning: swp{b} use is deprecated for this architecture /tmp/ccqUmufr.s:1245: Warning: swp{b} use is deprecated for this architecture /tmp/ccqUmufr.s:1262: Warning: swp{b} use is deprecated for this architecture /tmp/ccqUmufr.s:1327: Warning: swp{b} use is deprecated for this architecture /tmp/ccqUmufr.s:1337: Warning: swp{b} use is deprecated for this architecture /tmp/ccqUmufr.s:1354: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /tmp/ccYhCyyZ.s: Assembler messages: /tmp/ccYhCyyZ.s:1451: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:1460: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:1477: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:1522: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:1531: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:1548: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:1993: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2002: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2019: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2156: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2166: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2183: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2918: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2927: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:2944: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3096: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3105: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3122: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3279: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3288: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3305: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3465: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3475: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3492: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3541: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3550: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3567: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3618: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3627: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:3644: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4423: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4432: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4449: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4601: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4610: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4627: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4783: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4792: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4809: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4981: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:4991: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5008: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5057: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5066: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5083: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5134: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5143: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5160: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5977: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:5986: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6003: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6173: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6182: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6199: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6349: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6358: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6375: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6528: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6537: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6554: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6704: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6713: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6730: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6885: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6894: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:6911: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7134: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7143: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7160: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7424: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7434: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7451: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7498: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7508: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7525: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7572: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7582: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7599: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7646: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7656: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7673: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7722: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7731: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7748: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7799: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7808: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7825: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7876: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7885: Warning: swp{b} use is deprecated for this architecture /tmp/ccYhCyyZ.s:7902: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /tmp/ccUhTf8C.s: Assembler messages: /tmp/ccUhTf8C.s:4524: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:4533: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:4550: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:4595: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:4604: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:4621: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:12969: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:12978: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:12995: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:13249: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:13257: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:13274: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:13576: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:13585: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:13602: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14023: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14031: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14048: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14377: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14386: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14403: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14655: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14663: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14680: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14982: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:14991: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:15008: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:15431: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:15439: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:15456: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:16663: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:16672: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:16689: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:16806: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:16815: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:16832: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17119: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17129: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17146: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17194: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17202: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17219: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17627: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17636: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17653: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17924: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17932: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:17949: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:25313: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:25323: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:25340: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:25448: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:25457: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:25474: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:26290: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:26300: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:26317: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:26425: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:26434: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:26451: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:32643: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:32653: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:32670: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:32778: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:32787: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:32804: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:33642: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:33652: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:33669: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:33777: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:33786: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:33803: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:34924: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:34934: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:34951: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:35057: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:35066: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:35083: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:37641: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:37651: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:37668: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:37776: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:37785: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:37802: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:38926: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:38936: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:38953: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:39061: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:39070: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:39087: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:42477: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:42487: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:42504: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:42612: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:42621: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:42638: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:43476: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:43486: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:43503: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:43611: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:43620: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:43637: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:45053: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:45063: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:45080: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:45188: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:45197: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:45214: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:48504: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:48514: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:48531: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:48639: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:48648: Warning: swp{b} use is deprecated for this architecture /tmp/ccUhTf8C.s:48665: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /tmp/cctKg9Dd.s: Assembler messages: /tmp/cctKg9Dd.s:971: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:980: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:997: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1042: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1051: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1068: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1421: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1430: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1447: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1595: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1604: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1621: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1732: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1741: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1758: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1865: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1875: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1892: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1961: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1969: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:1986: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2154: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2163: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2180: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2226: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2234: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2251: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2299: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2307: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2324: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2607: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2616: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2633: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2739: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2748: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2765: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2871: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2880: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:2897: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3006: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3015: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3032: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3137: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3146: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3163: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3271: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3281: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3298: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3499: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3508: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3525: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3570: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3578: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3595: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3641: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3649: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3666: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3712: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3720: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3737: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3820: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3828: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3845: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3891: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3899: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:3916: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4206: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4215: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4232: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4338: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4347: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4364: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4470: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4479: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4496: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4605: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4614: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4631: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4736: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4745: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4762: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4870: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4880: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:4897: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5098: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5107: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5124: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5169: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5177: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5194: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5240: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5248: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5265: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5311: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5319: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5336: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5419: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5427: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5444: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5490: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5498: Warning: swp{b} use is deprecated for this architecture /tmp/cctKg9Dd.s:5515: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /tmp/ccoyUpc8.s: Assembler messages: /tmp/ccoyUpc8.s:971: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:980: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:997: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1042: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1051: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1068: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1428: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1437: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1454: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1603: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1612: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1629: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1739: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1749: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1766: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1827: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1835: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:1852: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2003: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2011: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2028: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2074: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2083: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2100: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2358: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2367: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2384: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2490: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2499: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2516: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2622: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2631: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2648: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2757: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2766: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2783: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2888: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2897: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:2914: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3022: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3032: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3049: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3250: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3259: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3276: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3321: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3329: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3346: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3392: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3400: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3417: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3463: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3471: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3488: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3571: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3579: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3596: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3642: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3650: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3667: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3957: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3966: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:3983: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4089: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4098: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4115: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4221: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4230: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4247: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4356: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4365: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4382: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4487: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4496: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4513: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4621: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4631: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4648: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4849: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4858: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4875: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4920: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4928: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4945: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4991: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:4999: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5016: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5062: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5070: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5087: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5170: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5178: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5195: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5241: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5249: Warning: swp{b} use is deprecated for this architecture /tmp/ccoyUpc8.s:5266: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /tmp/cczqo21K.s: Assembler messages: /tmp/cczqo21K.s:1332: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:1341: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:1358: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:1403: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:1412: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:1429: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2499: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2508: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2525: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2682: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2691: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2708: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2864: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2873: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:2890: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3016: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3025: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3042: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3127: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3136: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3153: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3206: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3215: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3232: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3285: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3294: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3311: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3604: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3613: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:3630: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4400: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4409: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4426: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4577: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4586: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4603: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4754: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4764: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4781: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4895: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4905: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4922: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4970: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4979: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:4996: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5045: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5054: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5071: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5483: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5492: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5509: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5662: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5671: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5688: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5844: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5853: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:5870: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6024: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6034: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6051: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6132: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6142: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6159: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6208: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6217: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6234: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6286: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6295: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6312: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6365: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6374: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:6391: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7316: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7325: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7342: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7569: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7578: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7595: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7755: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7764: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7781: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7907: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7916: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:7933: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8023: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8032: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8049: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8102: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8111: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8128: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8181: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8190: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8207: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8500: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8509: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:8526: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9331: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9340: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9357: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9514: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9523: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9540: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9810: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9819: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9836: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:9993: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10002: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10019: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10174: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10183: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10200: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10359: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10368: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10385: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10610: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10619: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10636: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10789: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10798: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10815: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10946: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10956: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:10973: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11023: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11032: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11049: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11102: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11111: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11128: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11181: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11190: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11207: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11260: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11269: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11286: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11339: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11348: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11365: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11418: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11427: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11444: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11497: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11506: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:11523: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:12776: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:12785: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:12802: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:12963: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:12972: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:12989: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13233: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13242: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13259: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13419: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13428: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13445: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13604: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13613: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13630: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13791: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13800: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:13817: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14058: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14067: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14084: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14243: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14252: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14269: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14431: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14440: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14457: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14617: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14626: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14643: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14800: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14809: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14826: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14988: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:14998: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15015: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15064: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15073: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15090: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15142: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15151: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15168: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15220: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15229: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15246: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15298: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15307: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15324: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15376: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15385: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15402: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15454: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15463: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15480: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15532: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15541: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15558: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15610: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15619: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15636: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15688: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15697: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15714: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15766: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15775: Warning: swp{b} use is deprecated for this architecture /tmp/cczqo21K.s:15792: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /tmp/ccjPclmb.s: Assembler messages: /tmp/ccjPclmb.s:3457: Warning: swp{b} use is deprecated for this architecture /tmp/ccjPclmb.s:3467: Warning: swp{b} use is deprecated for this architecture /tmp/ccjPclmb.s:3484: Warning: swp{b} use is deprecated for this architecture /tmp/ccjPclmb.s:3549: Warning: swp{b} use is deprecated for this architecture /tmp/ccjPclmb.s:3559: Warning: swp{b} use is deprecated for this architecture /tmp/ccjPclmb.s:3576: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /tmp/ccPZTJb5.s: Assembler messages: /tmp/ccPZTJb5.s:947: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:956: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:973: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1018: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1027: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1044: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1374: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1383: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1400: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1568: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1577: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1594: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1775: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1784: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1801: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1956: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1965: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:1982: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2067: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2075: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2092: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2147: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2155: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2172: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2345: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2353: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2370: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2457: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2465: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2482: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2921: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2930: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:2947: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3115: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3124: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3141: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3322: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3331: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3348: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3503: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3512: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3529: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3614: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3622: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3639: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3694: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3702: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3719: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3892: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3900: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:3917: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4005: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4013: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4030: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4472: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4481: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4498: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4668: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4677: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4694: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4877: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4886: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:4903: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5057: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5066: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5083: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5168: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5176: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5193: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5248: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5256: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5273: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5446: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5454: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5471: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5558: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5566: Warning: swp{b} use is deprecated for this architecture /tmp/ccPZTJb5.s:5583: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /tmp/cceLx5k6.s: Assembler messages: /tmp/cceLx5k6.s:1210: Warning: swp{b} use is deprecated for this architecture /tmp/cceLx5k6.s:1220: Warning: swp{b} use is deprecated for this architecture /tmp/cceLx5k6.s:1237: Warning: swp{b} use is deprecated for this architecture /tmp/cceLx5k6.s:1301: Warning: swp{b} use is deprecated for this architecture /tmp/cceLx5k6.s:1311: Warning: swp{b} use is deprecated for this architecture /tmp/cceLx5k6.s:1328: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /tmp/ccTF6zhd.s: Assembler messages: /tmp/ccTF6zhd.s:2150: Warning: swp{b} use is deprecated for this architecture /tmp/ccTF6zhd.s:2159: Warning: swp{b} use is deprecated for this architecture /tmp/ccTF6zhd.s:2176: Warning: swp{b} use is deprecated for this architecture /tmp/ccTF6zhd.s:2221: Warning: swp{b} use is deprecated for this architecture /tmp/ccTF6zhd.s:2230: Warning: swp{b} use is deprecated for this architecture /tmp/ccTF6zhd.s:2247: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /tmp/ccI4GzjK.s: Assembler messages: /tmp/ccI4GzjK.s:1508: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1517: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1534: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1579: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1588: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1605: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1944: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1953: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:1970: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:2038: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:2048: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:2065: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:3617: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:3626: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:3643: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:3843: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:3853: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:3870: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:4077: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:4086: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:4103: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:4136: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:4146: Warning: swp{b} use is deprecated for this architecture /tmp/ccI4GzjK.s:4163: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(int)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /tmp/ccEt6Hw1.s: Assembler messages: /tmp/ccEt6Hw1.s:2605: Warning: swp{b} use is deprecated for this architecture /tmp/ccEt6Hw1.s:2615: Warning: swp{b} use is deprecated for this architecture /tmp/ccEt6Hw1.s:2632: Warning: swp{b} use is deprecated for this architecture /tmp/ccEt6Hw1.s:2696: Warning: swp{b} use is deprecated for this architecture /tmp/ccEt6Hw1.s:2706: Warning: swp{b} use is deprecated for this architecture /tmp/ccEt6Hw1.s:2723: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /tmp/ccNKSEo7.s: Assembler messages: /tmp/ccNKSEo7.s:974: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:984: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:1001: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:1066: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:1076: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:1093: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:2161: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:2171: Warning: swp{b} use is deprecated for this architecture /tmp/ccNKSEo7.s:2188: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /tmp/ccGI05b0.s: Assembler messages: /tmp/ccGI05b0.s:1452: Warning: swp{b} use is deprecated for this architecture /tmp/ccGI05b0.s:1461: Warning: swp{b} use is deprecated for this architecture /tmp/ccGI05b0.s:1478: Warning: swp{b} use is deprecated for this architecture /tmp/ccGI05b0.s:1523: Warning: swp{b} use is deprecated for this architecture /tmp/ccGI05b0.s:1532: Warning: swp{b} use is deprecated for this architecture /tmp/ccGI05b0.s:1549: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /tmp/ccaBStGp.s: Assembler messages: /tmp/ccaBStGp.s:1910: Warning: swp{b} use is deprecated for this architecture /tmp/ccaBStGp.s:1920: Warning: swp{b} use is deprecated for this architecture /tmp/ccaBStGp.s:1937: Warning: swp{b} use is deprecated for this architecture /tmp/ccaBStGp.s:2001: Warning: swp{b} use is deprecated for this architecture /tmp/ccaBStGp.s:2011: Warning: swp{b} use is deprecated for this architecture /tmp/ccaBStGp.s:2028: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /tmp/cc6ttjK1.s: Assembler messages: /tmp/cc6ttjK1.s:1314: Warning: swp{b} use is deprecated for this architecture /tmp/cc6ttjK1.s:1324: Warning: swp{b} use is deprecated for this architecture /tmp/cc6ttjK1.s:1341: Warning: swp{b} use is deprecated for this architecture /tmp/cc6ttjK1.s:1406: Warning: swp{b} use is deprecated for this architecture /tmp/cc6ttjK1.s:1416: Warning: swp{b} use is deprecated for this architecture /tmp/cc6ttjK1.s:1433: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /tmp/ccHkRU3D.s: Assembler messages: /tmp/ccHkRU3D.s:789: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:798: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:815: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:860: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:869: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:886: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1213: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1223: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1240: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1305: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1314: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1331: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1524: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1534: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1551: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1616: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1625: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1642: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1835: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1845: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1862: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1927: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1936: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:1953: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2146: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2156: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2173: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2238: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2247: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2264: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2461: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2471: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2488: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2553: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2562: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2579: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2771: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2781: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2798: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2863: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2872: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:2889: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3087: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3096: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3113: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3221: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3231: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3248: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3341: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3350: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3367: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3413: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3421: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3438: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3660: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3670: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3687: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3752: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3761: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3778: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3973: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:3983: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4000: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4065: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4074: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4091: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4283: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4293: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4310: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4375: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4384: Warning: swp{b} use is deprecated for this architecture /tmp/ccHkRU3D.s:4401: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /tmp/cclAUgar.s: Assembler messages: /tmp/cclAUgar.s:949: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:958: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:975: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:1020: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:1029: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:1046: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:1903: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:1912: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:1929: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:1997: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:2005: Warning: swp{b} use is deprecated for this architecture /tmp/cclAUgar.s:2022: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /tmp/ccPyUG8v.s: Assembler messages: /tmp/ccPyUG8v.s:1580: Warning: swp{b} use is deprecated for this architecture /tmp/ccPyUG8v.s:1590: Warning: swp{b} use is deprecated for this architecture /tmp/ccPyUG8v.s:1607: Warning: swp{b} use is deprecated for this architecture /tmp/ccPyUG8v.s:1671: Warning: swp{b} use is deprecated for this architecture /tmp/ccPyUG8v.s:1681: Warning: swp{b} use is deprecated for this architecture /tmp/ccPyUG8v.s:1698: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /tmp/ccxeDApU.s: Assembler messages: /tmp/ccxeDApU.s:1230: Warning: swp{b} use is deprecated for this architecture /tmp/ccxeDApU.s:1239: Warning: swp{b} use is deprecated for this architecture /tmp/ccxeDApU.s:1256: Warning: swp{b} use is deprecated for this architecture /tmp/ccxeDApU.s:1301: Warning: swp{b} use is deprecated for this architecture /tmp/ccxeDApU.s:1310: Warning: swp{b} use is deprecated for this architecture /tmp/ccxeDApU.s:1327: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /tmp/ccHVnSTz.s: Assembler messages: /tmp/ccHVnSTz.s:1292: Warning: swp{b} use is deprecated for this architecture /tmp/ccHVnSTz.s:1302: Warning: swp{b} use is deprecated for this architecture /tmp/ccHVnSTz.s:1319: Warning: swp{b} use is deprecated for this architecture /tmp/ccHVnSTz.s:1383: Warning: swp{b} use is deprecated for this architecture /tmp/ccHVnSTz.s:1393: Warning: swp{b} use is deprecated for this architecture /tmp/ccHVnSTz.s:1410: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /tmp/ccWSjl7i.s: Assembler messages: /tmp/ccWSjl7i.s:499: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:508: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:525: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:570: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:579: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:596: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:764: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:773: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:790: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:910: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:919: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:936: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1046: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1055: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1072: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1185: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1194: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1211: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1320: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1329: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1346: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1457: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1466: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1483: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1593: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1602: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1619: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1730: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1739: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1756: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1892: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1962: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:1979: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2142: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2152: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2169: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2218: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2227: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2244: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2293: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2302: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2319: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2368: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2377: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2394: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2443: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2452: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2469: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2518: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2527: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2544: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2593: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2602: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2619: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2668: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2677: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2694: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2745: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2754: Warning: swp{b} use is deprecated for this architecture /tmp/ccWSjl7i.s:2771: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /tmp/cc3qyr0d.s: Assembler messages: /tmp/cc3qyr0d.s:2945: Warning: swp{b} use is deprecated for this architecture /tmp/cc3qyr0d.s:2955: Warning: swp{b} use is deprecated for this architecture /tmp/cc3qyr0d.s:2972: Warning: swp{b} use is deprecated for this architecture /tmp/cc3qyr0d.s:3037: Warning: swp{b} use is deprecated for this architecture /tmp/cc3qyr0d.s:3047: Warning: swp{b} use is deprecated for this architecture /tmp/cc3qyr0d.s:3064: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/algo/blast/core /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /tmp/cchXfnUj.s: Assembler messages: /tmp/cchXfnUj.s:1783: Warning: swp{b} use is deprecated for this architecture /tmp/cchXfnUj.s:1793: Warning: swp{b} use is deprecated for this architecture /tmp/cchXfnUj.s:1810: Warning: swp{b} use is deprecated for this architecture /tmp/cchXfnUj.s:1874: Warning: swp{b} use is deprecated for this architecture /tmp/cchXfnUj.s:1884: Warning: swp{b} use is deprecated for this architecture /tmp/cchXfnUj.s:1901: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie test_objmgr.o blast_test_util.o blast_unit_test.o bl2seq_unit_test.o gencode_singleton_unit_test.o blastoptions_unit_test.o blastfilter_unit_test.o uniform_search_unit_test.o remote_blast_unit_test.o aascan_unit_test.o ntscan_unit_test.o version_reference_unit_test.o aalookup_unit_test.o subj_ranges_unit_test.o blastengine_unit_test.o linkhsp_unit_test.o blasthits_unit_test.o gapinfo_unit_test.o rps_unit_test.o hspstream_unit_test.o hspstream_test_util.o scoreblk_unit_test.o seqalign_cmp.o seqalign_set_convert.o split_query_unit_test.o phiblast_unit_test.o prelimsearch_unit_test.o psiblast_unit_test.o psibl2seq_unit_test.o traceback_unit_test.o tracebacksearch_unit_test.o msa2pssm_unit_test.o optionshandle_unit_test.o hspfilter_culling_unit_test.o hspfilter_besthit_unit_test.o psiblast_iteration_unit_test.o pssmcreate_unit_test.o blastdiag_unit_test.o blastextend_unit_test.o blastsetup_unit_test.o pssmenginefreqratios_unit_test.o querydata_unit_test.o queryinfo_unit_test.o redoalignment_unit_test.o search_strategy_unit_test.o setupfactory_unit_test.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o seqinfosrc_unit_test.o ntlookup_unit_test.o seqsrc_unit_test.o seqsrc_mock.o pssm_test_util.o pssmcreate_cdd_unit_test.o delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o blast_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w APP_PROJ=blast_format_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /tmp/ccwUh0wA.s: Assembler messages: /tmp/ccwUh0wA.s:1402: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:1411: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:1428: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:1473: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:1482: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:1499: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:2134: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:2143: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:2160: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:2261: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:2270: Warning: swp{b} use is deprecated for this architecture /tmp/ccwUh0wA.s:2287: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /tmp/ccP2q3Tx.s: Assembler messages: /tmp/ccP2q3Tx.s:1814: Warning: swp{b} use is deprecated for this architecture /tmp/ccP2q3Tx.s:1823: Warning: swp{b} use is deprecated for this architecture /tmp/ccP2q3Tx.s:1840: Warning: swp{b} use is deprecated for this architecture /tmp/ccP2q3Tx.s:1885: Warning: swp{b} use is deprecated for this architecture /tmp/ccP2q3Tx.s:1894: Warning: swp{b} use is deprecated for this architecture /tmp/ccP2q3Tx.s:1911: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithDB::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithBl2seq::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /tmp/ccTUzIKl.s: Assembler messages: /tmp/ccTUzIKl.s:775: Warning: swp{b} use is deprecated for this architecture /tmp/ccTUzIKl.s:784: Warning: swp{b} use is deprecated for this architecture /tmp/ccTUzIKl.s:801: Warning: swp{b} use is deprecated for this architecture /tmp/ccTUzIKl.s:846: Warning: swp{b} use is deprecated for this architecture /tmp/ccTUzIKl.s:855: Warning: swp{b} use is deprecated for this architecture /tmp/ccTUzIKl.s:872: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /tmp/ccL6EVjz.s: Assembler messages: /tmp/ccL6EVjz.s:1195: Warning: swp{b} use is deprecated for this architecture /tmp/ccL6EVjz.s:1204: Warning: swp{b} use is deprecated for this architecture /tmp/ccL6EVjz.s:1221: Warning: swp{b} use is deprecated for this architecture /tmp/ccL6EVjz.s:1266: Warning: swp{b} use is deprecated for this architecture /tmp/ccL6EVjz.s:1275: Warning: swp{b} use is deprecated for this architecture /tmp/ccL6EVjz.s:1292: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o blast_format_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_format_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_format_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w APP_PROJ=bdbloader_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include -I../ /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp: In function 'void bdbloader::RetrievePartsOfLargeChromosome(bool)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:256:51: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /tmp/cc39kLkn.s: Assembler messages: /tmp/cc39kLkn.s:1492: Warning: swp{b} use is deprecated for this architecture /tmp/cc39kLkn.s:1502: Warning: swp{b} use is deprecated for this architecture /tmp/cc39kLkn.s:1519: Warning: swp{b} use is deprecated for this architecture /tmp/cc39kLkn.s:1584: Warning: swp{b} use is deprecated for this architecture /tmp/cc39kLkn.s:1594: Warning: swp{b} use is deprecated for this architecture /tmp/cc39kLkn.s:1611: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o bdbloader_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f bdbloader_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f bdbloader_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w APP_PROJ=seqdb_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function 'void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:78:18: warning: variable 'wholeL' set but not used [-Wunused-but-set-variable] /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function 'void seqdb::OidRanges::test_method()': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1525:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /tmp/ccVyUB6x.s: Assembler messages: /tmp/ccVyUB6x.s:8586: Warning: swp{b} use is deprecated for this architecture /tmp/ccVyUB6x.s:8595: Warning: swp{b} use is deprecated for this architecture /tmp/ccVyUB6x.s:8612: Warning: swp{b} use is deprecated for this architecture /tmp/ccVyUB6x.s:8657: Warning: swp{b} use is deprecated for this architecture /tmp/ccVyUB6x.s:8666: Warning: swp{b} use is deprecated for this architecture /tmp/ccVyUB6x.s:8683: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lrt -lm -lpthread -o seqdb_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f seqdb_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f seqdb_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd app/blast/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast -w all make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast -w all make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_app_util sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blast_app_util -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/blast_app_util.cpp: In function 'void ncbi::s_ImportQueries(const ncbi::objects::CBlast4_queries&, ncbi::CRef, ncbi::blast::CBlastAppArgs*)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/blast_app_util.cpp:372:61: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblast_app_util.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblast_app_util.a /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libblast_app_util.a ln -f .blast_app_util.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blast_formatter LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blast_formatter -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blast_formatter /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_formatter /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_formatter /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_formatter make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastn LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blastn -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastn /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastn make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastp LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blastp -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastp /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastp /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastp /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastp make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastx LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blastx -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastx /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastx /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastx /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastx make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=deltablast LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=deltablast -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o deltablast /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f deltablast /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f deltablast /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/deltablast make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=psiblast LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=psiblast -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/psiblast_app.cpp: In function 'ncbi::CConstRef s_GetQueryBioseq(ncbi::CConstRef, ncbi::CRef, ncbi::CRef)': /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/psiblast_app.cpp:144:77: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o psiblast /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f psiblast /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f psiblast /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/psiblast make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpsblast LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=rpsblast -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o rpsblast /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f rpsblast /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f rpsblast /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/rpsblast make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpstblastn LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=rpstblastn -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o rpstblastn /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f rpstblastn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f rpstblastn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/rpstblastn make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastn LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=tblastn -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o tblastn /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f tblastn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f tblastn /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/tblastn make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastx LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=tblastx -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f tblastx /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f tblastx /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/tblastx make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=writedb sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -shared -o libwritedb.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libwritedb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libwritedb.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libwritedb.so ln -f .writedb.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.writedb.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdb_aliastool LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdb_aliastool -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdb_aliastool /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdb_aliastool /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdb_aliastool /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcheck LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdbcheck -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdbcheck /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdbcheck /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcmd LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdbcmd -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdbcmd /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdbcmd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdbcmd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcp LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdbcp -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdbcp /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdbcp /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdbcp /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdbcp make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=convert2blastmask LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=convert2blastmask -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqmasks_io -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o convert2blastmask /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f convert2blastmask /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f convert2blastmask /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeblastdb LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=makeblastdb -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o makeblastdb /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f makeblastdb /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f makeblastdb /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/makeblastdb make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeprofiledb LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=makeprofiledb -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o makeprofiledb /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f makeprofiledb /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f makeprofiledb /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/dustmasker/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' cd app/dustmasker/ && /usr/bin/make -w APP_PROJ=dustmasker LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/dustmasker TMPL=dustmasker -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lxobjutil -lseqdb -lblastdb -lcreaders -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f dustmasker /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f dustmasker /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/dustmasker make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' cd algo/segmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgosegmask sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/segmask TMPL=xalgosegmask -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgosegmask.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgosegmask.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgosegmask.so ln -f .xalgosegmask.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' cd app/segmasker/ && /usr/bin/make -w APP_PROJ=segmasker LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/segmasker TMPL=segmasker -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjsimple -lseqmasks_io -lxalgosegmask -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o segmasker /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f segmasker /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f segmasker /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/segmasker make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker -w all make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' cd app/winmasker/ && /usr/bin/make -w APP_PROJ=winmasker LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker TMPL=winmasker -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqdb -lblastdb -lseqmasks_io -ltables -lxobjread -lcreaders -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o windowmasker /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f windowmasker /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f windowmasker /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/windowmasker make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' cd objmgr/split/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' cd objmgr/split/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2_split sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split TMPL=id2_split -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -shared -o libid2_split.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libid2_split.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libid2_split.so /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib/libid2_split.so ln -f .id2_split.dep /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/align_format/unit_test/ && /usr/bin/make -w APP_PROJ=align_format_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /tmp/ccQSUhLE.s: Assembler messages: /tmp/ccQSUhLE.s:1260: Warning: swp{b} use is deprecated for this architecture /tmp/ccQSUhLE.s:1269: Warning: swp{b} use is deprecated for this architecture /tmp/ccQSUhLE.s:1286: Warning: swp{b} use is deprecated for this architecture /tmp/ccQSUhLE.s:1331: Warning: swp{b} use is deprecated for this architecture /tmp/ccQSUhLE.s:1340: Warning: swp{b} use is deprecated for this architecture /tmp/ccQSUhLE.s:1357: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /tmp/ccrqI1Fk.s: Assembler messages: /tmp/ccrqI1Fk.s:1070: Warning: swp{b} use is deprecated for this architecture /tmp/ccrqI1Fk.s:1079: Warning: swp{b} use is deprecated for this architecture /tmp/ccrqI1Fk.s:1096: Warning: swp{b} use is deprecated for this architecture /tmp/ccrqI1Fk.s:1141: Warning: swp{b} use is deprecated for this architecture /tmp/ccrqI1Fk.s:1150: Warning: swp{b} use is deprecated for this architecture /tmp/ccrqI1Fk.s:1167: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /tmp/cch8b27W.s: Assembler messages: /tmp/cch8b27W.s:756: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:765: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:782: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:827: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:836: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:853: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1017: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1026: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1043: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1203: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1213: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1230: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1340: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1350: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1367: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1476: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1486: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1503: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1635: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1645: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1662: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1706: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1716: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1733: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1777: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1787: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1804: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1872: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1880: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:1897: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2187: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2196: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2213: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2373: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2382: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2399: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2513: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2522: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2539: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2647: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2657: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2674: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2718: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2728: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2745: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2815: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2823: Warning: swp{b} use is deprecated for this architecture /tmp/cch8b27W.s:2840: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /tmp/ccr0LA4l.s: Assembler messages: /tmp/ccr0LA4l.s:859: Warning: swp{b} use is deprecated for this architecture /tmp/ccr0LA4l.s:868: Warning: swp{b} use is deprecated for this architecture /tmp/ccr0LA4l.s:885: Warning: swp{b} use is deprecated for this architecture /tmp/ccr0LA4l.s:930: Warning: swp{b} use is deprecated for this architecture /tmp/ccr0LA4l.s:939: Warning: swp{b} use is deprecated for this architecture /tmp/ccr0LA4l.s:956: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /tmp/ccS7z1ma.s: Assembler messages: /tmp/ccS7z1ma.s:1735: Warning: swp{b} use is deprecated for this architecture /tmp/ccS7z1ma.s:1744: Warning: swp{b} use is deprecated for this architecture /tmp/ccS7z1ma.s:1761: Warning: swp{b} use is deprecated for this architecture /tmp/ccS7z1ma.s:1806: Warning: swp{b} use is deprecated for this architecture /tmp/ccS7z1ma.s:1815: Warning: swp{b} use is deprecated for this architecture /tmp/ccS7z1ma.s:1832: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o align_format_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f align_format_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f align_format_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w APP_PROJ=blastdb_format_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /tmp/ccV07WIy.s: Assembler messages: /tmp/ccV07WIy.s:2181: Warning: swp{b} use is deprecated for this architecture /tmp/ccV07WIy.s:2190: Warning: swp{b} use is deprecated for this architecture /tmp/ccV07WIy.s:2207: Warning: swp{b} use is deprecated for this architecture /tmp/ccV07WIy.s:2252: Warning: swp{b} use is deprecated for this architecture /tmp/ccV07WIy.s:2261: Warning: swp{b} use is deprecated for this architecture /tmp/ccV07WIy.s:2278: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lrt -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdb_format_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdb_format_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w APP_PROJ=gene_info_reader LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o gene_info_reader /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f gene_info_reader /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f gene_info_reader /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w APP_PROJ=gene_info_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /tmp/ccBs9yae.s: Assembler messages: /tmp/ccBs9yae.s:2568: Warning: swp{b} use is deprecated for this architecture /tmp/ccBs9yae.s:2577: Warning: swp{b} use is deprecated for this architecture /tmp/ccBs9yae.s:2594: Warning: swp{b} use is deprecated for this architecture /tmp/ccBs9yae.s:2639: Warning: swp{b} use is deprecated for this architecture /tmp/ccBs9yae.s:2648: Warning: swp{b} use is deprecated for this architecture /tmp/ccBs9yae.s:2665: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -lrt -lm -lpthread -o gene_info_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f gene_info_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f gene_info_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_demo LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o seqdb_demo /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f seqdb_demo /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f seqdb_demo /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_perf LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o seqdb_perf /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f seqdb_perf /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f seqdb_perf /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w APP_PROJ=writedb_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /tmp/ccj6JqZx.s: Assembler messages: /tmp/ccj6JqZx.s:3386: Warning: swp{b} use is deprecated for this architecture /tmp/ccj6JqZx.s:3395: Warning: swp{b} use is deprecated for this architecture /tmp/ccj6JqZx.s:3412: Warning: swp{b} use is deprecated for this architecture /tmp/ccj6JqZx.s:3457: Warning: swp{b} use is deprecated for this architecture /tmp/ccj6JqZx.s:3466: Warning: swp{b} use is deprecated for this architecture /tmp/ccj6JqZx.s:3483: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie writedb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lxobjutil -lcreaders -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o writedb_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f writedb_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f writedb_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w APP_PROJ=blast_services_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w all make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /tmp/ccqmh0qZ.s: Assembler messages: /tmp/ccqmh0qZ.s:1611: Warning: swp{b} use is deprecated for this architecture /tmp/ccqmh0qZ.s:1620: Warning: swp{b} use is deprecated for this architecture /tmp/ccqmh0qZ.s:1637: Warning: swp{b} use is deprecated for this architecture /tmp/ccqmh0qZ.s:1682: Warning: swp{b} use is deprecated for this architecture /tmp/ccqmh0qZ.s:1691: Warning: swp{b} use is deprecated for this architecture /tmp/ccqmh0qZ.s:1708: Warning: swp{b} use is deprecated for this architecture /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o blast_services_unit_test /bin/bash /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_services_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_services_unit_test /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' make[2]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' make[1]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' debian/rules override_dh_auto_test make[1]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' dh_auto_test make[2]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++' if test -s ""; then \ cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' ====================================================================== make[4]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress' echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/bitset' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util/bitset' echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' echo 'Warning: non-existent sub-project "services"' Warning: non-existent sub-project "services" /usr/bin/make -C ext -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/serial' echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/ncbimime' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon3' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/access' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/macro' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects/macro' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools' /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' TEST -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast' echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -C pubseq -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' NOTE: Skipping project pubseq due to unmet requirements: PubSeqOS make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -C pubseq2 -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' NOTE: Skipping project pubseq2 due to unmet requirements: PubSeqOS make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/gicache' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" echo 'Warning: non-existent sub-project "trace"' Warning: non-existent sub-project "trace" echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/format' echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" echo 'Warning: non-existent sub-project "edit"' Warning: non-existent sub-project "edit" echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/cleanup' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/objtools' echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[8]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/algo' echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app' echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" echo 'Warning: non-existent sub-project "lds_indexer"' Warning: non-existent sub-project "lds_indexer" echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" make[5]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build/app' echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... Done. OK -- [serial/datatool] datatool.sh (real 1.78, user 1.41, sys 0.16) OK -- [serial/datatool] datatool_xml.sh (real 0.24, user 0.12, sys 0.04) OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.12, user 0.04, sys 0.04) OK -- [objtools/blast/services/unit_test] blast_services_unit_test (real 46.48, user 5.41, sys 0.75) Succeeded : 4 Timeout : 0 Failed : 0 Absent : 0 ******** ALL TESTS COMPLETED SUCCESSFULLY ******** make[3]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++/BUILD/build' make[2]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26/c++' c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err make[1]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev --with quilt dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install make[1]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' debian/rules override_dh_install make[1]: Entering directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool \ debian/ncbi-blast+/usr/bin/project_tree_builder \ debian/ncbi-blast+/usr/lib/ncbi-blast+/libtest_*.so if test -d debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin/; fi make[1]: Leaving directory `/build/ncbi-blast+-objxC0/ncbi-blast+-2.2.26' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ dpkg-deb: building package `ncbi-blast+' in `../ncbi-blast+_2.2.26-3_armhf.deb'. dpkg-genchanges -B -mbuildd >../ncbi-blast+_2.2.26-3_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ncbi-blast+-2.2.26 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120524-1248 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ ncbi-blast+_2.2.26-3_armhf.changes: ─────────────────────────────────── Format: 1.8 Date: Thu, 10 May 2012 23:42:49 -0400 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: armhf Version: 2.2.26-3 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Aaron M. Ucko Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 669679 Changes: ncbi-blast+ (2.2.26-3) unstable; urgency=low . [ Aaron M. Ucko ] * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation errors and warnings. (Closes: #669679.) - Explicitly qualify more dependent names originating in base templates. - Directly #include headers as needed. - Use modern syntax for making protected base members public. - Add forward declarations as needed. * Wrap and sort build dependencies to ease maintenance thereof. * Enable full hardening flags, introducing a small patch (use_pie_for_apps) to reflect the need to build executables and libraries differently. * Use upstream's new --with-symbols flag in nostrip builds. . [ Andreas Tille ] * debian/control: Modernize Vcs-* fields. Checksums-Sha1: f627e21c8e9fd21bf530f7a83e953d874cb86deb 9838030 ncbi-blast+_2.2.26-3_armhf.deb Checksums-Sha256: 5c6028b11a7e1843e443003b3ef916ea204ba082f6ec4456444c340a6afe868e 9838030 ncbi-blast+_2.2.26-3_armhf.deb Files: bb9d33d82f579d1b2ae47b41ad00d14d 9838030 science optional ncbi-blast+_2.2.26-3_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ ncbi-blast+_2.2.26-3_armhf.deb ────────────────────────────── new debian package, version 2.0. size 9838030 bytes: control archive= 3462 bytes. 1200 bytes, 24 lines control 6138 bytes, 93 lines md5sums Package: ncbi-blast+ Version: 2.2.26-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 25849 Depends: ncbi-data, python, perl, libbz2-1.0, libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libpcre3 (>= 8.10), libstdc++6 (>= 4.6), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2012-05-24 12:44 ./ drwxr-xr-x root/root 0 2012-05-24 12:44 ./usr/ drwxr-xr-x root/root 0 2012-05-24 12:45 ./usr/bin/ -rwxr-xr-x root/root 157168 2012-05-24 12:45 ./usr/bin/psiblast -rwxr-xr-x root/root 67056 2012-05-24 12:45 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 144880 2012-05-24 12:45 ./usr/bin/makeblastdb -rwxr-xr-x root/root 42480 2012-05-24 12:45 ./usr/bin/makembindex -rwxr-xr-x root/root 132592 2012-05-24 12:45 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 5950 2012-05-24 12:44 ./usr/bin/windowmasker_2.2.22_adapter -rwxr-xr-x root/root 161268 2012-05-24 12:45 ./usr/bin/blast_formatter -rwxr-xr-x root/root 136688 2012-05-24 12:45 ./usr/bin/blastn -rwxr-xr-x root/root 132592 2012-05-24 12:45 ./usr/bin/rpstblastn -rwxr-xr-x root/root 38384 2012-05-24 12:45 ./usr/bin/segmasker -rwxr-xr-x root/root 50692 2012-05-24 12:45 ./usr/bin/blastdbcp -rwxr-xr-x root/root 42480 2012-05-24 12:45 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 132592 2012-05-24 12:45 ./usr/bin/blastx -rwxr-xr-x root/root 144880 2012-05-24 12:45 ./usr/bin/tblastn -rwxr-xr-x root/root 132592 2012-05-24 12:45 ./usr/bin/tblastx -rwxr-xr-x root/root 26096 2012-05-24 12:45 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 38384 2012-05-24 12:45 ./usr/bin/dustmasker -rwxr-xr-x root/root 132592 2012-05-24 12:45 ./usr/bin/blastp -rwxr-xr-x root/root 11874 2012-05-24 12:44 ./usr/bin/update_blastdb -rwxr-xr-x root/root 38384 2012-05-24 12:45 ./usr/bin/windowmasker -rwxr-xr-x root/root 34288 2012-05-24 12:45 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 157168 2012-05-24 12:45 ./usr/bin/deltablast -rwxr-xr-x root/root 99824 2012-05-24 12:45 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 51346 2012-05-24 12:44 ./usr/bin/legacy_blast -rwxr-xr-x root/root 87576 2012-05-24 12:45 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 116208 2012-05-24 12:45 ./usr/bin/blastdbcheck drwxr-xr-x root/root 0 2012-05-24 12:44 ./usr/share/ drwxr-xr-x root/root 0 2012-05-24 12:44 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-24 12:45 ./usr/share/man/man1/ -rw-r--r-- root/root 760 2012-05-24 12:44 ./usr/share/man/man1/ncbi-blast+.1.gz drwxr-xr-x root/root 0 2012-05-24 12:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-24 12:45 ./usr/share/doc/ncbi-blast+/ -rw-r--r-- root/root 2433 2012-05-10 20:42 ./usr/share/doc/ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 11447 2012-05-10 20:26 ./usr/share/doc/ncbi-blast+/copyright -rw-r--r-- root/root 504 2012-04-13 15:05 ./usr/share/doc/ncbi-blast+/README.Debian drwxr-xr-x root/root 0 2012-05-24 12:44 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-24 12:45 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 58760 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libseqcode.so -rw-r--r-- root/root 75144 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libsubmit.so -rw-r--r-- root/root 71044 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so -rw-r--r-- root/root 390536 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12:45 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 50568 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libentrez2cli.so -rw-r--r-- root/root 238988 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libxblastformat.so -rw-r--r-- root/root 538412 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 79240 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 447888 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 46512 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libseqmasks_io.so -rw-r--r-- root/root 533900 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libxobjutil.so -rw-r--r-- root/root 25940 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libxalgodustmask.so -rw-r--r-- root/root 71048 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 157064 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libxalgoblastdbindex.so -rw-r--r-- root/root 75196 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libsequtil.so -rw-r--r-- root/root 275848 2012-05-24 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./usr/lib/ncbi-blast+/libncbi_xreader_id2.so -rw-r--r-- root/root 13652 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libxalgosegmask.so -rw-r--r-- root/root 2360932 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libxobjmgr.so -rw-r--r-- root/root 13604 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libtables.so -rw-r--r-- root/root 128392 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so -rw-r--r-- root/root 99720 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 538168 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libxconnect.so -rw-r--r-- root/root 107912 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libseqset.so -rw-r--r-- root/root 611720 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 103844 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so -rw-r--r-- root/root 107984 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libncbi_xreader_id1.so -rw-r--r-- root/root 91528 2012-05-24 12:45 ./usr/lib/ncbi-blast+/libigblast.so ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /build/ncbi-blast+-objxC0 Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autotools-dev* bsdmainutils* debhelper* diffstat* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libboost-test-dev* libboost-test1.49-dev* libboost-test1.49.0* libboost1.49-dev* libbz2-dev* libcroco3* libffi5* libglib2.0-0* libmagic1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libunistring0* libxml2* man-db* po-debconf* quilt* sbuild-build-depends-core-dummy* sbuild-build-depends-ncbi-blast+-dummy* time* zlib1g-dev* 0 upgraded, 0 newly installed, 32 to remove and 20 not upgraded. After this operation, 123 MB disk space will be freed. (Reading database ... 22326 files and directories currently installed.) Removing sbuild-build-depends-ncbi-blast+-dummy ... Removing autotools-dev ... Removing quilt ... Purging configuration files for quilt ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing diffstat ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libboost-test-dev ... Removing libboost-test1.49-dev ... Removing libboost-test1.49.0 ... Purging configuration files for libboost-test1.49.0 ... Removing libboost1.49-dev ... Removing libbz2-dev:armhf ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3-dev ... Removing libpcrecpp0:armhf ... Purging configuration files for libpcrecpp0:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... Removing time ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package time should be updated. Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 263724 Build-Time: 22441 Distribution: testing Install-Time: 94 Job: ncbi-blast+_2.2.26-3 Package: ncbi-blast+ Package-Time: 22564 Source-Version: 2.2.26-3 Space: 263724 Status: successful Version: 2.2.26-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120524-1248 Build needed 06:16:04, 263724k disc space