sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build01.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mcl 1:12-068-1 (armhf) 04 May 2012 12:36 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mcl Version: 1:12-068-1 Source Version: 1:12-068-1 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/mcl-bhHDbl/mcl-12-068' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mcl-bhHDbl' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-52e6947f-6085-4a9c-af10-d3915ae1b3c4' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'mcl' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/mcl/ Need to get 2899 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main mcl 1:12-068-1 (dsc) [1347 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main mcl 1:12-068-1 (tar) [2887 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main mcl 1:12-068-1 (diff) [10.3 kB] Fetched 2899 kB in 0s (9076 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Ohw_Zu/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), autotools-dev, quilt, zoem, tidy Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), autotools-dev, quilt, zoem, tidy dpkg-deb: building package `sbuild-build-depends-mcl-dummy' in `/«BUILDDIR»/resolver-beb5mj/apt_archive/sbuild-build-depends-mcl-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mcl build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libtidy-0.99-0 libunistring0 libxml2 man-db po-debconf quilt tidy zoem Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent tidy-doc aephea Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libtidy-0.99-0 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-mcl-dummy tidy zoem 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. Need to get 456 kB/10.3 MB of archives. After this operation, 26.4 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main libtidy-0.99-0 armhf 20091223cvs-1.2 [127 kB] Get:2 http://repo.raspbian.lan/raspbian/ testing/main tidy armhf 20091223cvs-1.2 [27.6 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main zoem armhf 11-166-1 [302 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 456 kB in 0s (4220 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-2_armhf.deb) ... Selecting previously unselected package libtidy-0.99-0. Unpacking libtidy-0.99-0 (from .../libtidy-0.99-0_20091223cvs-1.2_armhf.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ... Selecting previously unselected package tidy. Unpacking tidy (from .../tidy_20091223cvs-1.2_armhf.deb) ... Selecting previously unselected package zoem. Unpacking zoem (from .../zoem_11-166-1_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-mcl-dummy. Unpacking sbuild-build-depends-mcl-dummy (from .../sbuild-build-depends-mcl-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up autotools-dev (20120210.1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up diffstat (1.55-2) ... Setting up libtidy-0.99-0 (20091223cvs-1.2) ... Setting up quilt (0.60-2) ... Setting up tidy (20091223cvs-1.2) ... Setting up zoem (11-166-1) ... Setting up sbuild-build-depends-mcl-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffstat_1.55-2 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtidy-0.99-0_20091223cvs-1.2 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mcl-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tidy_20091223cvs-1.2 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 zoem_11-166-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Mar 9 15:16:52 2012 UTC using DSA key ID EB88E930 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mcl_12-068-1.dsc dpkg-source: info: extracting mcl in mcl-12-068 dpkg-source: info: unpacking mcl_12-068.orig.tar.gz dpkg-source: info: unpacking mcl_12-068-1.debian.tar.gz dpkg-source: info: applying 02-wrong-interpreter-path.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-52e6947f-6085-4a9c-af10-d3915ae1b3c4 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package mcl dpkg-buildpackage: source version 1:12-068-1 dpkg-source --before-build mcl-12-068 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null pop -a -R || test $? = 2 Removing patch 02-wrong-interpreter-path.patch Restoring src/alien/oxygen/src/mcxdeblast No patches applied rm -rf .pc debian/stamp-patched dh_testdir dh_testroot if [ -f autofoo/config.sub.backup ]; then \ mv -fv autofoo/config.sub.backup autofoo/config.sub; \ fi if [ -f autofoo/config.guess.backup ]; then \ mv -fv autofoo/config.guess.backup autofoo/config.guess; \ fi rm -f config-stamp dh_testdir dh_testroot rm -f -f build-stamp configure-stamp [ ! -f Makefile ] || /usr/bin/make distclean dh_clean debian/rules build-arch QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 02-wrong-interpreter-path.patch patching file src/alien/oxygen/src/mcxdeblast Now at patch 02-wrong-interpreter-path.patch touch debian/stamp-patched dh_testdir if [ -r /usr/share/misc/config.sub ] && [ ! -f autofoo/config.sub.backup ]; then \ mv -v autofoo/config.sub autofoo/config.sub.backup; \ cp -f /usr/share/misc/config.sub autofoo/config.sub; \ fi `autofoo/config.sub' -> `autofoo/config.sub.backup' if [ -r /usr/share/misc/config.guess ] && [ ! -f autofoo/config.guess.backup ]; then \ mv -v autofoo/config.guess autofoo/config.guess.backup; \ cp -f /usr/share/misc/config.guess autofoo/config.guess; \ fi `autofoo/config.guess' -> `autofoo/config.guess.backup' touch config-stamp dh_testdir ./configure \ --build arm-linux-gnueabihf --enable-blast \ --prefix=/usr \ --mandir=\${prefix}/share/man \ --infodir=\${prefix}/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking _____ weak test for C void* <=> unsigned int conversion... passed checking for gawk... (cached) mawk checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking whether ln -s works... yes checking for ranlib... ranlib checking for main in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for memset... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strpbrk... yes checking for strstr... yes checking for va_copy() function... yes configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating doc/Makefile config.status: creating testing/Makefile config.status: creating testing/stream/Makefile config.status: creating testing/blast/Makefile config.status: creating testing/setops/Makefile config.status: creating graphs/Makefile config.status: creating img/Makefile config.status: creating scripts/Makefile config.status: creating util/Makefile config.status: creating src/Makefile config.status: creating src/clew/Makefile config.status: creating src/mcl/Makefile config.status: creating src/gryphon/Makefile config.status: creating src/impala/Makefile config.status: creating src/shcl/Makefile config.status: creating src/shmcl/Makefile config.status: creating src/shmx/Makefile config.status: creating src/shmcxquery/Makefile config.status: creating src/shmcx/Makefile config.status: creating src/alien/Makefile config.status: creating src/alien/oxygen/Makefile config.status: creating src/alien/oxygen/doc/Makefile config.status: creating src/alien/oxygen/src/Makefile config.status: creating config.h config.status: executing depfiles commands touch configure-stamp dh_testdir /usr/bin/make make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»' Making all in . make[3]: Entering directory `/«PKGBUILDDIR»' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/«PKGBUILDDIR»' Making all in util make[3]: Entering directory `/«PKGBUILDDIR»/util' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT alloc.o -MD -MP -MF .deps/alloc.Tpo -c -o alloc.o alloc.c mv -f .deps/alloc.Tpo .deps/alloc.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT array.o -MD -MP -MF .deps/array.Tpo -c -o array.o array.c mv -f .deps/array.Tpo .deps/array.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT rand.o -MD -MP -MF .deps/rand.Tpo -c -o rand.o rand.c mv -f .deps/rand.Tpo .deps/rand.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT equate.o -MD -MP -MF .deps/equate.Tpo -c -o equate.o equate.c mv -f .deps/equate.Tpo .deps/equate.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT opt.o -MD -MP -MF .deps/opt.Tpo -c -o opt.o opt.c mv -f .deps/opt.Tpo .deps/opt.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT io.o -MD -MP -MF .deps/io.Tpo -c -o io.o io.c mv -f .deps/io.Tpo .deps/io.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT err.o -MD -MP -MF .deps/err.Tpo -c -o err.o err.c mv -f .deps/err.Tpo .deps/err.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT hash.o -MD -MP -MF .deps/hash.Tpo -c -o hash.o hash.c mv -f .deps/hash.Tpo .deps/hash.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT heap.o -MD -MP -MF .deps/heap.Tpo -c -o heap.o heap.c mv -f .deps/heap.Tpo .deps/heap.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT let.o -MD -MP -MF .deps/let.Tpo -c -o let.o let.c mv -f .deps/let.Tpo .deps/let.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT list.o -MD -MP -MF .deps/list.Tpo -c -o list.o list.c mv -f .deps/list.Tpo .deps/list.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT gralloc.o -MD -MP -MF .deps/gralloc.Tpo -c -o gralloc.o gralloc.c mv -f .deps/gralloc.Tpo .deps/gralloc.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT tok.o -MD -MP -MF .deps/tok.Tpo -c -o tok.o tok.c mv -f .deps/tok.Tpo .deps/tok.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT ting.o -MD -MP -MF .deps/ting.Tpo -c -o ting.o ting.c mv -f .deps/ting.Tpo .deps/ting.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT ding.o -MD -MP -MF .deps/ding.Tpo -c -o ding.o ding.c mv -f .deps/ding.Tpo .deps/ding.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT tr.o -MD -MP -MF .deps/tr.Tpo -c -o tr.o tr.c mv -f .deps/tr.Tpo .deps/tr.Po gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -pthread -MT types.o -MD -MP -MF .deps/types.Tpo -c -o types.o types.c mv -f .deps/types.Tpo .deps/types.Po rm -f libutil.a ar cru libutil.a alloc.o array.o rand.o equate.o opt.o io.o err.o hash.o heap.o let.o list.o gralloc.o tok.o ting.o ding.o tr.o types.o ranlib libutil.a make[3]: Leaving directory `/«PKGBUILDDIR»/util' Making all in img make[3]: Entering directory `/«PKGBUILDDIR»/img' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/img' Making all in graphs make[3]: Entering directory `/«PKGBUILDDIR»/graphs' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/graphs' Making all in doc make[3]: Entering directory `/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/doc' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/src' Making all in . make[4]: Entering directory `/«PKGBUILDDIR»/src' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src' Making all in clew make[4]: Entering directory `/«PKGBUILDDIR»/src/clew' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT scan.o -MD -MP -MF .deps/scan.Tpo -c -o scan.o scan.c mv -f .deps/scan.Tpo .deps/scan.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT claw.o -MD -MP -MF .deps/claw.Tpo -c -o claw.o claw.c mv -f .deps/claw.Tpo .deps/claw.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clm.o -MD -MP -MF .deps/clm.Tpo -c -o clm.o clm.c mv -f .deps/clm.Tpo .deps/clm.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT cat.o -MD -MP -MF .deps/cat.Tpo -c -o cat.o cat.c mv -f .deps/cat.Tpo .deps/cat.Po rm -f libclew.a ar cru libclew.a scan.o claw.o clm.o cat.o ranlib libclew.a make[4]: Leaving directory `/«PKGBUILDDIR»/src/clew' Making all in mcl make[4]: Entering directory `/«PKGBUILDDIR»/src/mcl' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT shadow.o -MD -MP -MF .deps/shadow.Tpo -c -o shadow.o shadow.c mv -f .deps/shadow.Tpo .deps/shadow.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT inflate.o -MD -MP -MF .deps/inflate.Tpo -c -o inflate.o inflate.c mv -f .deps/inflate.Tpo .deps/inflate.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT alg.o -MD -MP -MF .deps/alg.Tpo -c -o alg.o alg.c mv -f .deps/alg.Tpo .deps/alg.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT expand.o -MD -MP -MF .deps/expand.Tpo -c -o expand.o expand.c mv -f .deps/expand.Tpo .deps/expand.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT dpsd.o -MD -MP -MF .deps/dpsd.Tpo -c -o dpsd.o dpsd.c mv -f .deps/dpsd.Tpo .deps/dpsd.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT interpret.o -MD -MP -MF .deps/interpret.Tpo -c -o interpret.o interpret.c mv -f .deps/interpret.Tpo .deps/interpret.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT proc.o -MD -MP -MF .deps/proc.Tpo -c -o proc.o proc.c mv -f .deps/proc.Tpo .deps/proc.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT procinit.o -MD -MP -MF .deps/procinit.Tpo -c -o procinit.o procinit.c mv -f .deps/procinit.Tpo .deps/procinit.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT transform.o -MD -MP -MF .deps/transform.Tpo -c -o transform.o transform.c mv -f .deps/transform.Tpo .deps/transform.Po rm -f libmcl.a ar cru libmcl.a shadow.o inflate.o alg.o expand.o dpsd.o interpret.o proc.o procinit.o transform.o ranlib libmcl.a make[4]: Leaving directory `/«PKGBUILDDIR»/src/mcl' Making all in gryphon make[4]: Entering directory `/«PKGBUILDDIR»/src/gryphon' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT path.o -MD -MP -MF .deps/path.Tpo -c -o path.o path.c mv -f .deps/path.Tpo .deps/path.Po rm -f libgryphon.a ar cru libgryphon.a path.o ranlib libgryphon.a make[4]: Leaving directory `/«PKGBUILDDIR»/src/gryphon' Making all in impala make[4]: Entering directory `/«PKGBUILDDIR»/src/impala' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT compose.o -MD -MP -MF .deps/compose.Tpo -c -o compose.o compose.c mv -f .deps/compose.Tpo .deps/compose.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT tab.o -MD -MP -MF .deps/tab.Tpo -c -o tab.o tab.c mv -f .deps/tab.Tpo .deps/tab.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT pval.o -MD -MP -MF .deps/pval.Tpo -c -o pval.o pval.c mv -f .deps/pval.Tpo .deps/pval.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT iface.o -MD -MP -MF .deps/iface.Tpo -c -o iface.o iface.c mv -f .deps/iface.Tpo .deps/iface.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT io.o -MD -MP -MF .deps/io.Tpo -c -o io.o io.c mv -f .deps/io.Tpo .deps/io.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT ivp.o -MD -MP -MF .deps/ivp.Tpo -c -o ivp.o ivp.c mv -f .deps/ivp.Tpo .deps/ivp.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT matrix.o -MD -MP -MF .deps/matrix.Tpo -c -o matrix.o matrix.c mv -f .deps/matrix.Tpo .deps/matrix.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT vector.o -MD -MP -MF .deps/vector.Tpo -c -o vector.o vector.c mv -f .deps/vector.Tpo .deps/vector.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT version.o -MD -MP -MF .deps/version.Tpo -c -o version.o version.c mv -f .deps/version.Tpo .deps/version.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT app.o -MD -MP -MF .deps/app.Tpo -c -o app.o app.c mv -f .deps/app.Tpo .deps/app.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT stream.o -MD -MP -MF .deps/stream.Tpo -c -o stream.o stream.c mv -f .deps/stream.Tpo .deps/stream.Po rm -f libimpala.a ar cru libimpala.a compose.o tab.o pval.o iface.o io.o ivp.o matrix.o vector.o version.o app.o stream.o ranlib libimpala.a make[4]: Leaving directory `/«PKGBUILDDIR»/src/impala' Making all in shcl make[4]: Entering directory `/«PKGBUILDDIR»/src/shcl' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmformat.o -MD -MP -MF .deps/clmformat.Tpo -c -o clmformat.o clmformat.c mv -f .deps/clmformat.Tpo .deps/clmformat.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT report.o -MD -MP -MF .deps/report.Tpo -c -o report.o report.c mv -f .deps/report.Tpo .deps/report.Po gcc -g -O2 -pthread -o clmformat clmformat.o report.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clm.o -MD -MP -MF .deps/clm.Tpo -c -o clm.o clm.c mv -f .deps/clm.Tpo .deps/clm.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clminfo.o -MD -MP -MF .deps/clminfo.Tpo -c -o clminfo.o clminfo.c mv -f .deps/clminfo.Tpo .deps/clminfo.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmimac.o -MD -MP -MF .deps/clmimac.Tpo -c -o clmimac.o clmimac.c mv -f .deps/clmimac.Tpo .deps/clmimac.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmadjust.o -MD -MP -MF .deps/clmadjust.Tpo -c -o clmadjust.o clmadjust.c mv -f .deps/clmadjust.Tpo .deps/clmadjust.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmresidue.o -MD -MP -MF .deps/clmresidue.Tpo -c -o clmresidue.o clmresidue.c mv -f .deps/clmresidue.Tpo .deps/clmresidue.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmclose.o -MD -MP -MF .deps/clmclose.Tpo -c -o clmclose.o clmclose.c mv -f .deps/clmclose.Tpo .deps/clmclose.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmmate.o -MD -MP -MF .deps/clmmate.Tpo -c -o clmmate.o clmmate.c mv -f .deps/clmmate.Tpo .deps/clmmate.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmmeet.o -MD -MP -MF .deps/clmmeet.Tpo -c -o clmmeet.o clmmeet.c mv -f .deps/clmmeet.Tpo .deps/clmmeet.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmps.o -MD -MP -MF .deps/clmps.Tpo -c -o clmps.o clmps.c mv -f .deps/clmps.Tpo .deps/clmps.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmdist.o -MD -MP -MF .deps/clmdist.Tpo -c -o clmdist.o clmdist.c mv -f .deps/clmdist.Tpo .deps/clmdist.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmorder.o -MD -MP -MF .deps/clmorder.Tpo -c -o clmorder.o clmorder.c mv -f .deps/clmorder.Tpo .deps/clmorder.Po gcc -g -O2 -pthread -o clm clm.o clminfo.o clmimac.o clmadjust.o clmresidue.o clmclose.o clmmate.o clmmeet.o clmps.o clmdist.o clmorder.o report.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmdag.o -MD -MP -MF .deps/clmdag.Tpo -c -o clmdag.o clmdag.c mv -f .deps/clmdag.Tpo .deps/clmdag.Po gcc -g -O2 -pthread -o clmdag clmdag.o report.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT clmframe.o -MD -MP -MF .deps/clmframe.Tpo -c -o clmframe.o clmframe.c mv -f .deps/clmframe.Tpo .deps/clmframe.Po gcc -g -O2 -pthread -o clmframe clmframe.o report.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm make[4]: Leaving directory `/«PKGBUILDDIR»/src/shcl' Making all in shmcl make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcl' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcl.o -MD -MP -MF .deps/mcl.Tpo -c -o mcl.o mcl.c mv -f .deps/mcl.Tpo .deps/mcl.Po gcc -g -O2 -pthread -o mcl mcl.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mclcm.o -MD -MP -MF .deps/mclcm.Tpo -c -o mclcm.o mclcm.c mv -f .deps/mclcm.Tpo .deps/mclcm.Po gcc -g -O2 -pthread -o mclcm mclcm.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcl' Making all in shmx make[4]: Entering directory `/«PKGBUILDDIR»/src/shmx' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcx.o -MD -MP -MF .deps/mcx.Tpo -c -o mcx.o mcx.c mv -f .deps/mcx.Tpo .deps/mcx.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxconvert.o -MD -MP -MF .deps/mcxconvert.Tpo -c -o mcxconvert.o mcxconvert.c mv -f .deps/mcxconvert.Tpo .deps/mcxconvert.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxquery.o -MD -MP -MF .deps/mcxquery.Tpo -c -o mcxquery.o mcxquery.c mcxquery.c: In function 'qMain': mcxquery.c:1026:13: warning: passing argument 4 of 'get_cls_id' from incompatible pointer type [enabled by default] mcxquery.c:974:12: note: expected 'long int *' but argument is of type 'ofs *' mcxquery.c:1164:16: warning: passing argument 4 of 'get_cls_id' from incompatible pointer type [enabled by default] mcxquery.c:974:12: note: expected 'long int *' but argument is of type 'ofs *' mv -f .deps/mcxquery.Tpo .deps/mcxquery.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxdiameter.o -MD -MP -MF .deps/mcxdiameter.Tpo -c -o mcxdiameter.o mcxdiameter.c mv -f .deps/mcxdiameter.Tpo .deps/mcxdiameter.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxclcf.o -MD -MP -MF .deps/mcxclcf.Tpo -c -o mcxclcf.o mcxclcf.c mv -f .deps/mcxclcf.Tpo .deps/mcxclcf.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxerdos.o -MD -MP -MF .deps/mcxerdos.Tpo -c -o mcxerdos.o mcxerdos.c mv -f .deps/mcxerdos.Tpo .deps/mcxerdos.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxcollect.o -MD -MP -MF .deps/mcxcollect.Tpo -c -o mcxcollect.o mcxcollect.c mv -f .deps/mcxcollect.Tpo .deps/mcxcollect.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxtab.o -MD -MP -MF .deps/mcxtab.Tpo -c -o mcxtab.o mcxtab.c mv -f .deps/mcxtab.Tpo .deps/mcxtab.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxalter.o -MD -MP -MF .deps/mcxalter.Tpo -c -o mcxalter.o mcxalter.c mv -f .deps/mcxalter.Tpo .deps/mcxalter.Po gcc -g -O2 -pthread -o mcx mcx.o mcxconvert.o mcxquery.o mcxdiameter.o mcxclcf.o mcxerdos.o mcxcollect.o mcxtab.o mcxalter.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxsubs.o -MD -MP -MF .deps/mcxsubs.Tpo -c -o mcxsubs.o mcxsubs.c mv -f .deps/mcxsubs.Tpo .deps/mcxsubs.Po gcc -g -O2 -pthread -o mcxsubs mcxsubs.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxmap.o -MD -MP -MF .deps/mcxmap.Tpo -c -o mcxmap.o mcxmap.c mv -f .deps/mcxmap.Tpo .deps/mcxmap.Po gcc -g -O2 -pthread -o mcxmap mcxmap.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxassemble.o -MD -MP -MF .deps/mcxassemble.Tpo -c -o mcxassemble.o mcxassemble.c mv -f .deps/mcxassemble.Tpo .deps/mcxassemble.Po gcc -g -O2 -pthread -o mcxassemble mcxassemble.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxarray.o -MD -MP -MF .deps/mcxarray.Tpo -c -o mcxarray.o mcxarray.c mv -f .deps/mcxarray.Tpo .deps/mcxarray.Po gcc -g -O2 -pthread -o mcxarray mcxarray.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxdump.o -MD -MP -MF .deps/mcxdump.Tpo -c -o mcxdump.o mcxdump.c mv -f .deps/mcxdump.Tpo .deps/mcxdump.Po gcc -g -O2 -pthread -o mcxdump mcxdump.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxload.o -MD -MP -MF .deps/mcxload.Tpo -c -o mcxload.o mcxload.c mv -f .deps/mcxload.Tpo .deps/mcxload.Po gcc -g -O2 -pthread -o mcxload mcxload.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxrand.o -MD -MP -MF .deps/mcxrand.Tpo -c -o mcxrand.o mcxrand.c mv -f .deps/mcxrand.Tpo .deps/mcxrand.Po gcc -g -O2 -pthread -o mcxrand mcxrand.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxtest.o -MD -MP -MF .deps/mcxtest.Tpo -c -o mcxtest.o mcxtest.c mv -f .deps/mcxtest.Tpo .deps/mcxtest.Po gcc -g -O2 -pthread -o mcxtest mcxtest.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxminusmeet.o -MD -MP -MF .deps/mcxminusmeet.Tpo -c -o mcxminusmeet.o mcxminusmeet.c mv -f .deps/mcxminusmeet.Tpo .deps/mcxminusmeet.Po gcc -g -O2 -pthread -o mcxminusmeet mcxminusmeet.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxmm.o -MD -MP -MF .deps/mcxmm.Tpo -c -o mcxmm.o mcxmm.c mv -f .deps/mcxmm.Tpo .deps/mcxmm.Po gcc -g -O2 -pthread -o mcxmm mcxmm.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmx' Making all in shmcx make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcx' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxi.o -MD -MP -MF .deps/mcxi.Tpo -c -o mcxi.o mcxi.c mv -f .deps/mcxi.Tpo .deps/mcxi.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT stack.o -MD -MP -MF .deps/stack.Tpo -c -o stack.o stack.c mv -f .deps/stack.Tpo .deps/stack.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT glob.o -MD -MP -MF .deps/glob.Tpo -c -o glob.o glob.c mv -f .deps/glob.Tpo .deps/glob.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT util.o -MD -MP -MF .deps/util.Tpo -c -o util.o util.c mv -f .deps/util.Tpo .deps/util.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT ops.o -MD -MP -MF .deps/ops.Tpo -c -o ops.o ops.c mv -f .deps/ops.Tpo .deps/ops.Po gcc -g -O2 -pthread -o mcxi mcxi.o stack.o glob.o util.o ops.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcx' Making all in shmcxquery make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcxquery' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -g -O2 -pthread -MT mcxquery.o -MD -MP -MF .deps/mcxquery.Tpo -c -o mcxquery.o mcxquery.c mv -f .deps/mcxquery.Tpo .deps/mcxquery.Po gcc -g -O2 -pthread -o mcxquery mcxquery.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcxquery' Making all in alien make[4]: Entering directory `/«PKGBUILDDIR»/src/alien' Making all in oxygen make[5]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen' Making all in . make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen' make[6]: Nothing to be done for `all-am'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen' Making all in doc make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' Making all in src make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/src' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/src' make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen' make[5]: Entering directory `/«PKGBUILDDIR»/src/alien' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien' make[4]: Leaving directory `/«PKGBUILDDIR»/src/alien' make[3]: Leaving directory `/«PKGBUILDDIR»/src' Making all in include make[3]: Entering directory `/«PKGBUILDDIR»/include' Making all in . make[4]: Entering directory `/«PKGBUILDDIR»/include' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/include' make[3]: Leaving directory `/«PKGBUILDDIR»/include' Making all in scripts make[3]: Entering directory `/«PKGBUILDDIR»/scripts' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/scripts' Making all in testing make[3]: Entering directory `/«PKGBUILDDIR»/testing' Making all in . make[4]: Entering directory `/«PKGBUILDDIR»/testing' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing' Making all in stream make[4]: Entering directory `/«PKGBUILDDIR»/testing/stream' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/stream' Making all in blast make[4]: Entering directory `/«PKGBUILDDIR»/testing/blast' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/blast' Making all in setops make[4]: Entering directory `/«PKGBUILDDIR»/testing/setops' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/setops' make[3]: Leaving directory `/«PKGBUILDDIR»/testing' make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' touch build-stamp fakeroot debian/rules binary-arch dh_testdir /usr/bin/make make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»' Making all in . make[3]: Entering directory `/«PKGBUILDDIR»' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/«PKGBUILDDIR»' Making all in util make[3]: Entering directory `/«PKGBUILDDIR»/util' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/util' Making all in img make[3]: Entering directory `/«PKGBUILDDIR»/img' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/img' Making all in graphs make[3]: Entering directory `/«PKGBUILDDIR»/graphs' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/graphs' Making all in doc make[3]: Entering directory `/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/doc' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/src' Making all in . make[4]: Entering directory `/«PKGBUILDDIR»/src' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src' Making all in clew make[4]: Entering directory `/«PKGBUILDDIR»/src/clew' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/clew' Making all in mcl make[4]: Entering directory `/«PKGBUILDDIR»/src/mcl' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/mcl' Making all in gryphon make[4]: Entering directory `/«PKGBUILDDIR»/src/gryphon' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/gryphon' Making all in impala make[4]: Entering directory `/«PKGBUILDDIR»/src/impala' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/impala' Making all in shcl make[4]: Entering directory `/«PKGBUILDDIR»/src/shcl' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shcl' Making all in shmcl make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcl' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcl' Making all in shmx make[4]: Entering directory `/«PKGBUILDDIR»/src/shmx' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmx' Making all in shmcx make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcx' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcx' Making all in shmcxquery make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcxquery' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcxquery' Making all in alien make[4]: Entering directory `/«PKGBUILDDIR»/src/alien' Making all in oxygen make[5]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen' Making all in . make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen' make[6]: Nothing to be done for `all-am'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen' Making all in doc make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' Making all in src make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/src' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/src' make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen' make[5]: Entering directory `/«PKGBUILDDIR»/src/alien' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien' make[4]: Leaving directory `/«PKGBUILDDIR»/src/alien' make[3]: Leaving directory `/«PKGBUILDDIR»/src' Making all in include make[3]: Entering directory `/«PKGBUILDDIR»/include' Making all in . make[4]: Entering directory `/«PKGBUILDDIR»/include' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/include' make[3]: Leaving directory `/«PKGBUILDDIR»/include' Making all in scripts make[3]: Entering directory `/«PKGBUILDDIR»/scripts' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/scripts' Making all in testing make[3]: Entering directory `/«PKGBUILDDIR»/testing' Making all in . make[4]: Entering directory `/«PKGBUILDDIR»/testing' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing' Making all in stream make[4]: Entering directory `/«PKGBUILDDIR»/testing/stream' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/stream' Making all in blast make[4]: Entering directory `/«PKGBUILDDIR»/testing/blast' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/blast' Making all in setops make[4]: Entering directory `/«PKGBUILDDIR»/testing/setops' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/setops' make[3]: Leaving directory `/«PKGBUILDDIR»/testing' make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' touch build-stamp dh_testdir dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs /usr/bin/make install DESTDIR=/«PKGBUILDDIR»/debian/mcl make[1]: Entering directory `/«PKGBUILDDIR»' Making install in . make[2]: Entering directory `/«PKGBUILDDIR»' make[3]: Entering directory `/«PKGBUILDDIR»' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»' make[2]: Leaving directory `/«PKGBUILDDIR»' Making install in util make[2]: Entering directory `/«PKGBUILDDIR»/util' make[3]: Entering directory `/«PKGBUILDDIR»/util' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/util' make[2]: Leaving directory `/«PKGBUILDDIR»/util' Making install in img make[2]: Entering directory `/«PKGBUILDDIR»/img' make[3]: Entering directory `/«PKGBUILDDIR»/img' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/doc/mcl/examples" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/examples" /usr/bin/install -c -m 644 fa_1024.png fa_400.png fa_600.png fa_large.png fa.ps falkner-bidi.ps falkner.ps small.ps small.png '/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/examples' make[3]: Leaving directory `/«PKGBUILDDIR»/img' make[2]: Leaving directory `/«PKGBUILDDIR»/img' Making install in graphs make[2]: Entering directory `/«PKGBUILDDIR»/graphs' make[3]: Entering directory `/«PKGBUILDDIR»/graphs' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/doc/mcl/examples" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/examples" /usr/bin/install -c -m 644 falkner.mci falkner2.mci falkner.coords make-falkner.pl proteins.mci matula.mci lattice.mci honey.mci seven.mci friends small.mci small.map small.tab fznyy.tab fznyy.mci small64.mci petersen.mci tiny-min.mci tiny-nil.mci tiny-nilnine.mci tiny-ninenil.mci tiny-one.mci tiny-zero.mci data.raw data.hdr data.tab data.abc.raw data.abc.hdr data.abc.map T Tx Ty Txy '/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/examples' make[3]: Leaving directory `/«PKGBUILDDIR»/graphs' make[2]: Leaving directory `/«PKGBUILDDIR»/graphs' Making install in doc make[2]: Entering directory `/«PKGBUILDDIR»/doc' make[3]: Entering directory `/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/doc/mcl" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl" /usr/bin/install -c -m 644 mcl.html mcl.ps mcl.txt mclcm.html mclcm.ps mclcm.txt mclfaq.html mclfaq.ps mclfaq.txt mclfamily.html mclfamily.ps mcx.html mcx.ps mcxi.html mcxi.ps clm.html clm.ps mcxconvert.html mcxconvert.ps mcxarray.html mcxarray.ps mcxdump.html mcxdump.ps mcxdiameter.html mcxdiameter.ps mcxerdos.html mcxerdos.ps mcxalter.html mcxalter.ps mcxclcf.html mcxclcf.ps mcxctty.html mcxctty.ps mcxrand.html mcxrand.ps mcxload.html mcxload.ps mcxsubs.html mcxsubs.ps mcxmap.html '/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl' /usr/bin/install -c -m 644 mcxmap.ps mcxquery.html mcxquery.ps mcxassemble.html mcxassemble.ps mclpipeline.html mclpipeline.ps index.html mclindex.ps clmimac.html clmimac.ps clmclose.html clmclose.ps clmresidue.html clmresidue.ps clmdist.html clmdist.ps clmvol.html clmvol.ps clminfo.html clminfo.ps clmmate.html clmmate.ps clmmeet.html clmmeet.ps clmformat.html clmformat.ps clmorder.html clmorder.ps minimcl mcxio.html mcxio.ps clmprotocols.html clmprotocols.ps clmprotocols2.html clmprotocols2.ps tingea.log.html tingea.log.ps mclmcl.txt '/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl' test -z "/usr/share/man/man1" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/man/man1" /usr/bin/install -c -m 644 mcl.1 mclcm.1 clm.1 mcx.1 mcxi.1 clmresidue.1 clmclose.1 clmimac.1 clmmate.1 clmmeet.1 clmformat.1 clmvol.1 clmdist.1 clminfo.1 clmorder.1 mcxconvert.1 mcxassemble.1 mcxmap.1 mcxsubs.1 mcxload.1 mcxdump.1 mcxarray.1 mcxrand.1 mcxalter.1 mcxerdos.1 mcxdiameter.1 mcxctty.1 mcxclcf.1 mcxquery.1 mclpipeline.1 '/«PKGBUILDDIR»/debian/mcl/usr/share/man/man1' test -z "/usr/share/man/man5" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/man/man5" /usr/bin/install -c -m 644 mcxio.5 clmprotocols2.5 clmprotocols.5 '/«PKGBUILDDIR»/debian/mcl/usr/share/man/man5' test -z "/usr/share/man/man7" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/man/man7" /usr/bin/install -c -m 644 mclindex.7 mclfamily.7 mclfaq.7 tingea.log.7 '/«PKGBUILDDIR»/debian/mcl/usr/share/man/man7' make[3]: Leaving directory `/«PKGBUILDDIR»/doc' make[2]: Leaving directory `/«PKGBUILDDIR»/doc' Making install in src make[2]: Entering directory `/«PKGBUILDDIR»/src' Making install in . make[3]: Entering directory `/«PKGBUILDDIR»/src' make[4]: Entering directory `/«PKGBUILDDIR»/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src' make[3]: Leaving directory `/«PKGBUILDDIR»/src' Making install in clew make[3]: Entering directory `/«PKGBUILDDIR»/src/clew' make[4]: Entering directory `/«PKGBUILDDIR»/src/clew' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/clew' make[3]: Leaving directory `/«PKGBUILDDIR»/src/clew' Making install in mcl make[3]: Entering directory `/«PKGBUILDDIR»/src/mcl' make[4]: Entering directory `/«PKGBUILDDIR»/src/mcl' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/mcl' make[3]: Leaving directory `/«PKGBUILDDIR»/src/mcl' Making install in gryphon make[3]: Entering directory `/«PKGBUILDDIR»/src/gryphon' make[4]: Entering directory `/«PKGBUILDDIR»/src/gryphon' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/gryphon' make[3]: Leaving directory `/«PKGBUILDDIR»/src/gryphon' Making install in impala make[3]: Entering directory `/«PKGBUILDDIR»/src/impala' make[4]: Entering directory `/«PKGBUILDDIR»/src/impala' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/impala' make[3]: Leaving directory `/«PKGBUILDDIR»/src/impala' Making install in shcl make[3]: Entering directory `/«PKGBUILDDIR»/src/shcl' make[4]: Entering directory `/«PKGBUILDDIR»/src/shcl' test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/bin" /usr/bin/install -c clmformat clm '/«PKGBUILDDIR»/debian/mcl/usr/bin' test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/bin" /usr/bin/install -c mclpipeline '/«PKGBUILDDIR»/debian/mcl/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shcl' make[3]: Leaving directory `/«PKGBUILDDIR»/src/shcl' Making install in shmcl make[3]: Entering directory `/«PKGBUILDDIR»/src/shmcl' make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcl' test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/bin" /usr/bin/install -c mcl mclcm '/«PKGBUILDDIR»/debian/mcl/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcl' make[3]: Leaving directory `/«PKGBUILDDIR»/src/shmcl' Making install in shmx make[3]: Entering directory `/«PKGBUILDDIR»/src/shmx' make[4]: Entering directory `/«PKGBUILDDIR»/src/shmx' test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/bin" /usr/bin/install -c mcx mcxsubs mcxmap mcxassemble mcxarray mcxdump mcxload mcxrand '/«PKGBUILDDIR»/debian/mcl/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmx' make[3]: Leaving directory `/«PKGBUILDDIR»/src/shmx' Making install in shmcx make[3]: Entering directory `/«PKGBUILDDIR»/src/shmcx' make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcx' test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/bin" /usr/bin/install -c mcxi '/«PKGBUILDDIR»/debian/mcl/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcx' make[3]: Leaving directory `/«PKGBUILDDIR»/src/shmcx' Making install in shmcxquery make[3]: Entering directory `/«PKGBUILDDIR»/src/shmcxquery' make[4]: Entering directory `/«PKGBUILDDIR»/src/shmcxquery' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/src/shmcxquery' make[3]: Leaving directory `/«PKGBUILDDIR»/src/shmcxquery' Making install in alien make[3]: Entering directory `/«PKGBUILDDIR»/src/alien' Making install in oxygen make[4]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen' Making install in . make[5]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen' make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen' make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen' Making install in doc make[5]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' make[6]: Nothing to be done for `install-exec-am'. test -z "/usr/share/doc/mcl" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl" /usr/bin/install -c -m 644 mcxdeblast.html mcxdeblast.ps mclblastline.html mclblastline.ps '/«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl' test -z "/usr/share/man/man1" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/share/man/man1" /usr/bin/install -c -m 644 mcxdeblast.1 mclblastline.1 '/«PKGBUILDDIR»/debian/mcl/usr/share/man/man1' make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/doc' Making install in src make[5]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/src' make[6]: Entering directory `/«PKGBUILDDIR»/src/alien/oxygen/src' test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/mcl/usr/bin" /usr/bin/install -c mcxdeblast mclblastline '/«PKGBUILDDIR»/debian/mcl/usr/bin' make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/src' make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen/src' make[4]: Leaving directory `/«PKGBUILDDIR»/src/alien/oxygen' make[4]: Entering directory `/«PKGBUILDDIR»/src/alien' make[5]: Entering directory `/«PKGBUILDDIR»/src/alien' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/«PKGBUILDDIR»/src/alien' make[4]: Leaving directory `/«PKGBUILDDIR»/src/alien' make[3]: Leaving directory `/«PKGBUILDDIR»/src/alien' make[2]: Leaving directory `/«PKGBUILDDIR»/src' Making install in include make[2]: Entering directory `/«PKGBUILDDIR»/include' Making install in . make[3]: Entering directory `/«PKGBUILDDIR»/include' make[4]: Entering directory `/«PKGBUILDDIR»/include' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/include' make[3]: Leaving directory `/«PKGBUILDDIR»/include' make[2]: Leaving directory `/«PKGBUILDDIR»/include' Making install in scripts make[2]: Entering directory `/«PKGBUILDDIR»/scripts' make[3]: Entering directory `/«PKGBUILDDIR»/scripts' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/scripts' make[2]: Leaving directory `/«PKGBUILDDIR»/scripts' Making install in testing make[2]: Entering directory `/«PKGBUILDDIR»/testing' Making install in . make[3]: Entering directory `/«PKGBUILDDIR»/testing' make[4]: Entering directory `/«PKGBUILDDIR»/testing' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing' make[3]: Leaving directory `/«PKGBUILDDIR»/testing' Making install in stream make[3]: Entering directory `/«PKGBUILDDIR»/testing/stream' make[4]: Entering directory `/«PKGBUILDDIR»/testing/stream' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/stream' make[3]: Leaving directory `/«PKGBUILDDIR»/testing/stream' Making install in blast make[3]: Entering directory `/«PKGBUILDDIR»/testing/blast' make[4]: Entering directory `/«PKGBUILDDIR»/testing/blast' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/blast' make[3]: Leaving directory `/«PKGBUILDDIR»/testing/blast' Making install in setops make[3]: Entering directory `/«PKGBUILDDIR»/testing/setops' make[4]: Entering directory `/«PKGBUILDDIR»/testing/setops' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/testing/setops' make[3]: Leaving directory `/«PKGBUILDDIR»/testing/setops' make[2]: Leaving directory `/«PKGBUILDDIR»/testing' make[1]: Leaving directory `/«PKGBUILDDIR»' install -c -m 644 /«PKGBUILDDIR»/{AUTHORS,README,THANKS} /«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/ mkdir /«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/scripts install -c -m 644 /«PKGBUILDDIR»/scripts/clx* /«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/scripts/ rm -f /«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/*txt dh_install --sourcedir=debian/mcl dh_installdocs rm -f /«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/{AUTHORS,README,THANKS} rm -f /«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/*{html,ps,minimcl} rm -f -r /«PKGBUILDDIR»/debian/mcl/usr/share/doc/mcl/examples rm -f -r /«PKGBUILDDIR»/debian/mcl/usr/share/man/man[5,7] dh_installman dh_installchangelogs ChangeLog dh_strip dh_compress dh_fixperms dh_installdeb dh_shlibdeps dh_gencontrol dh_md5sums dh_builddeb -pmcl dpkg-deb: building package `mcl' in `../mcl_12-068-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../mcl_12-068-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mcl-12-068 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120504-1242 Finished ──────── I: Built successfully E: Package claims to have built mcl-doc_12-068-1_all.deb, but did not. This is a bug in the packaging. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ mcl_12-068-1_armhf.changes: ─────────────────────────── Format: 1.8 Date: Fri, 09 Mar 2012 15:15:48 +0000 Source: mcl Binary: mcl mcl-doc Architecture: armhf Version: 1:12-068-1 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Philipp Benner Description: mcl - Markov Cluster algorithm mcl-doc - documentation for mcl Changes: mcl (1:12-068-1) unstable; urgency=low . * New upstream version * debian/control: Standards version 3.9.2 Checksums-Sha1: b13ce065f13feb9617d08ae3cdba44b046a96400 1415706 mcl_12-068-1_armhf.deb Checksums-Sha256: ef3e554cd77dd2e7d62f79ce7bb637cc3b3f399bd5618bfe989f06a8211db7af 1415706 mcl_12-068-1_armhf.deb Files: da9ec75f6aa7f2c774f06330e8d8242c 1415706 math optional mcl_12-068-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ mcl_12-068-1_armhf.deb ────────────────────── new debian package, version 2.0. size 1415706 bytes: control archive= 2126 bytes. 750 bytes, 19 lines control 3335 bytes, 54 lines md5sums Package: mcl Version: 1:12-068-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2537 Depends: libc6 (>= 2.13-28) Suggests: mcl-doc Enhances: bioperl-run, blast2, ncbi-tools-bin Section: math Priority: optional Homepage: http://micans.org/mcl/ Description: Markov Cluster algorithm The MCL package is an implementation of the MCL algorithm, and offers utilities for manipulating sparse matrices (the essential data structure in the MCL algorithm) and conducting cluster experiments. . MCL is currently being used in sciences like biology (protein family detection, genomics), computer science (node clustering in Peer-to-Peer networks), and linguistics (text analysis). drwxr-xr-x root/root 0 2012-05-04 12:41 ./ drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/ drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/share/ drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/share/man/man1/ -rw-r--r-- root/root 832 2012-05-04 12:41 ./usr/share/man/man1/mcxalter.1.gz -rw-r--r-- root/root 4648 2012-05-04 12:41 ./usr/share/man/man1/mcxi.1.gz -rw-r--r-- root/root 2531 2012-05-04 12:41 ./usr/share/man/man1/clminfo.1.gz -rw-r--r-- root/root 5697 2012-05-04 12:41 ./usr/share/man/man1/clmdist.1.gz -rw-r--r-- root/root 1400 2012-05-04 12:41 ./usr/share/man/man1/mcxconvert.1.gz -rw-r--r-- root/root 1631 2012-05-04 12:41 ./usr/share/man/man1/clm.1.gz -rw-r--r-- root/root 5642 2012-05-04 12:41 ./usr/share/man/man1/mclpipeline.1.gz -rw-r--r-- root/root 1739 2012-05-04 12:41 ./usr/share/man/man1/mcxclcf.1.gz -rw-r--r-- root/root 3945 2012-05-04 12:41 ./usr/share/man/man1/mclcm.1.gz -rw-r--r-- root/root 1962 2012-05-04 12:41 ./usr/share/man/man1/mclblastline.1.gz -rw-r--r-- root/root 1535 2012-05-04 12:41 ./usr/share/man/man1/mcx.1.gz -rw-r--r-- root/root 3415 2012-05-04 12:41 ./usr/share/man/man1/mcxarray.1.gz -rw-r--r-- root/root 1964 2012-05-04 12:41 ./usr/share/man/man1/mcxctty.1.gz -rw-r--r-- root/root 19772 2012-05-04 12:41 ./usr/share/man/man1/mcl.1.gz -rw-r--r-- root/root 3259 2012-05-04 12:41 ./usr/share/man/man1/mcxquery.1.gz -rw-r--r-- root/root 1311 2012-05-04 12:41 ./usr/share/man/man1/clmorder.1.gz -rw-r--r-- root/root 6898 2012-05-04 12:41 ./usr/share/man/man1/clmformat.1.gz -rw-r--r-- root/root 1090 2012-05-04 12:41 ./usr/share/man/man1/clmvol.1.gz -rw-r--r-- root/root 2177 2012-05-04 12:41 ./usr/share/man/man1/mcxerdos.1.gz -rw-r--r-- root/root 1593 2012-05-04 12:41 ./usr/share/man/man1/clmclose.1.gz -rw-r--r-- root/root 1719 2012-05-04 12:41 ./usr/share/man/man1/clmmate.1.gz -rw-r--r-- root/root 972 2012-05-04 12:41 ./usr/share/man/man1/clmmeet.1.gz -rw-r--r-- root/root 3921 2012-05-04 12:41 ./usr/share/man/man1/mcxdump.1.gz -rw-r--r-- root/root 3264 2012-05-04 12:41 ./usr/share/man/man1/mcxrand.1.gz -rw-r--r-- root/root 2469 2012-05-04 12:41 ./usr/share/man/man1/mcxdeblast.1.gz -rw-r--r-- root/root 1156 2012-05-04 12:41 ./usr/share/man/man1/clmresidue.1.gz -rw-r--r-- root/root 1534 2012-05-04 12:41 ./usr/share/man/man1/clmimac.1.gz -rw-r--r-- root/root 1792 2012-05-04 12:41 ./usr/share/man/man1/mcxmap.1.gz -rw-r--r-- root/root 6326 2012-05-04 12:41 ./usr/share/man/man1/mcxsubs.1.gz -rw-r--r-- root/root 1879 2012-05-04 12:41 ./usr/share/man/man1/mcxdiameter.1.gz -rw-r--r-- root/root 5453 2012-05-04 12:41 ./usr/share/man/man1/mcxassemble.1.gz -rw-r--r-- root/root 5618 2012-05-04 12:41 ./usr/share/man/man1/mcxload.1.gz drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/share/doc/mcl/ -rw-r--r-- root/root 4894 2012-03-09 07:15 ./usr/share/doc/mcl/changelog.Debian.gz -rw-r--r-- root/root 2797 2009-11-24 12:14 ./usr/share/doc/mcl/copyright -rw-r--r-- root/root 24587 2012-03-08 04:38 ./usr/share/doc/mcl/changelog.gz -rw-r--r-- root/root 357 2009-11-24 12:14 ./usr/share/doc/mcl/README.Debian drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/share/doc/mcl/scripts/ -rw-r--r-- root/root 2296 2012-05-04 12:41 ./usr/share/doc/mcl/scripts/clxdo.gz -rw-r--r-- root/root 2177 2012-05-04 12:41 ./usr/share/doc/mcl/scripts/clxcoarse.gz drwxr-xr-x root/root 0 2012-05-04 12:41 ./usr/bin/ -rwxr-xr-x root/root 200160 2012-05-04 12:41 ./usr/bin/mclcm -rwxr-xr-x root/root 11900 2012-05-04 12:41 ./usr/bin/mcxdeblast -rwxr-xr-x root/root 234544 2012-05-04 12:41 ./usr/bin/mcx -rwxr-xr-x root/root 192336 2012-05-04 12:41 ./usr/bin/mcxassemble -rwxr-xr-x root/root 1663 2012-05-04 12:41 ./usr/bin/mclblastline -rwxr-xr-x root/root 207760 2012-05-04 12:41 ./usr/bin/mcxsubs -rwxr-xr-x root/root 114884 2012-05-04 12:41 ./usr/bin/mcxrand -rwxr-xr-x root/root 18990 2012-05-04 12:41 ./usr/bin/mclpipeline -rwxr-xr-x root/root 107540 2012-05-04 12:41 ./usr/bin/mcxmap -rwxr-xr-x root/root 213328 2012-05-04 12:41 ./usr/bin/clmformat -rwxr-xr-x root/root 131452 2012-05-04 12:41 ./usr/bin/mcxdump -rwxr-xr-x root/root 190688 2012-05-04 12:41 ./usr/bin/mcl -rwxr-xr-x root/root 233120 2012-05-04 12:41 ./usr/bin/clm -rwxr-xr-x root/root 152420 2012-05-04 12:41 ./usr/bin/mcxi -rwxr-xr-x root/root 195680 2012-05-04 12:41 ./usr/bin/mcxload -rwxr-xr-x root/root 203792 2012-05-04 12:41 ./usr/bin/mcxarray ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autotools-dev* bsdmainutils* debhelper* diffstat* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libcroco3* libffi5* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libtidy-0.99-0* libunistring0* libxml2* man-db* po-debconf* quilt* sbuild-build-depends-core-dummy* sbuild-build-depends-mcl-dummy* tidy* zoem* 0 upgraded, 0 newly installed, 26 to remove and 0 not upgraded. After this operation, 26.4 MB disk space will be freed. (Reading database ... 12229 files and directories currently installed.) Removing sbuild-build-depends-mcl-dummy ... Removing autotools-dev ... Removing quilt ... Purging configuration files for quilt ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing diffstat ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing tidy ... Purging configuration files for tidy ... Removing libtidy-0.99-0 ... Purging configuration files for libtidy-0.99-0 ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... Removing zoem ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 32644 Build-Time: 268 Distribution: testing Install-Time: 58 Job: mcl_1:12-068-1 Package: mcl Package-Time: 343 Source-Version: 1:12-068-1 Space: 32644 Status: successful Version: 1:12-068-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120504-1242 Build needed 00:05:43, 32644k disc space