sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build04.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ seqan 1.3.1-1 (armhf) 04 May 2012 22:35 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: seqan Version: 1.3.1-1 Source Version: 1.3.1-1 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/seqan-yY1Ygw/seqan-1.3.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/seqan-yY1Ygw' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-025ce4d3-1881-4084-87be-99087b1597e6' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'seqan' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/seqan/trunk/ Need to get 3205 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main seqan 1.3.1-1 (dsc) [1404 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main seqan 1.3.1-1 (tar) [3193 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main seqan 1.3.1-1 (diff) [10.7 kB] Fetched 3205 kB in 0s (9463 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-rR9vz0/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), cmake, zlib1g-dev, libbam-dev, libboost-dev Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), cmake, zlib1g-dev, libbam-dev, libboost-dev dpkg-deb: building package `sbuild-build-depends-seqan-dummy' in `/«BUILDDIR»/resolver-7ANM1R/apt_archive/sbuild-build-depends-seqan-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install seqan build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs cmake cmake-data debhelper emacsen-common file gettext gettext-base groff-base html2text intltool-debian libarchive12 libbam-dev libboost-dev libboost1.49-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1 libffi5 libgcrypt11 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libnettle4 libp11-kit0 libpcre3 libpipeline1 libprocps0 librtmp0 libsasl2-2 libssh2-1 libssl1.0.0 libtasn1-3 libunistring0 libxml2 libxmlrpc-core-c3 man-db po-debconf procps zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libboost-doc libboost1.49-doc libboost-chrono1.49-dev libboost-date-time1.49-dev libboost-filesystem1.49-dev libboost-graph-parallel1.49-dev libboost-graph1.49-dev libboost-iostreams1.49-dev libboost-locale1.49-dev libboost-math1.49-dev libboost-mpi1.49-dev libboost-program-options1.49-dev libboost-python1.49-dev libboost-random1.49-dev libboost-regex1.49-dev libboost-serialization1.49-dev libboost-signals1.49-dev libboost-system1.49-dev libboost-test1.49-dev libboost-thread1.49-dev libboost-timer1.49-dev libboost-wave1.49-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop rng-tools krb5-doc krb5-user less www-browser libmail-box-perl Recommended packages: autotools-dev curl wget lynx-cur autopoint ca-certificates libglib2.0-data shared-mime-info krb5-locales libsasl2-modules xml-core libmail-sendmail-perl psmisc The following NEW packages will be installed: bsdmainutils cdbs cmake cmake-data debhelper emacsen-common file gettext gettext-base groff-base html2text intltool-debian libarchive12 libbam-dev libboost-dev libboost1.49-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1 libffi5 libgcrypt11 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libnettle4 libp11-kit0 libpcre3 libpipeline1 libprocps0 librtmp0 libsasl2-2 libssh2-1 libssl1.0.0 libtasn1-3 libunistring0 libxml2 libxmlrpc-core-c3 man-db po-debconf procps sbuild-build-depends-seqan-dummy zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 143 kB/29.3 MB of archives. After this operation, 141 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main libbam-dev armhf 0.1.18-1 [143 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 143 kB in 0s (3011 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libprocps0:armhf. Unpacking libprocps0:armhf (from .../libprocps0_1%3a3.3.2-3_armhf.deb) ... Selecting previously unselected package libssl1.0.0:armhf. Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1b-1_armhf.deb) ... Selecting previously unselected package libgpg-error0:armhf. Unpacking libgpg-error0:armhf (from .../libgpg-error0_1.10-3_armhf.deb) ... Selecting previously unselected package libgcrypt11:armhf. Unpacking libgcrypt11:armhf (from .../libgcrypt11_1.5.0-3_armhf.deb) ... Selecting previously unselected package libp11-kit0:armhf. Unpacking libp11-kit0:armhf (from .../libp11-kit0_0.12-3_armhf.deb) ... Selecting previously unselected package libtasn1-3:armhf. Unpacking libtasn1-3:armhf (from .../libtasn1-3_2.12-1_armhf.deb) ... Selecting previously unselected package libgnutls26:armhf. Unpacking libgnutls26:armhf (from .../libgnutls26_2.12.18-1_armhf.deb) ... Selecting previously unselected package libkrb5support0:armhf. Unpacking libkrb5support0:armhf (from .../libkrb5support0_1.10+dfsg~beta1-2_armhf.deb) ... Selecting previously unselected package libk5crypto3:armhf. Unpacking libk5crypto3:armhf (from .../libk5crypto3_1.10+dfsg~beta1-2_armhf.deb) ... Selecting previously unselected package libkeyutils1:armhf. Unpacking libkeyutils1:armhf (from .../libkeyutils1_1.5.2-2_armhf.deb) ... Selecting previously unselected package libkrb5-3:armhf. Unpacking libkrb5-3:armhf (from .../libkrb5-3_1.10+dfsg~beta1-2_armhf.deb) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Unpacking libgssapi-krb5-2:armhf (from .../libgssapi-krb5-2_1.10+dfsg~beta1-2_armhf.deb) ... Selecting previously unselected package libidn11:armhf. Unpacking libidn11:armhf (from .../libidn11_1.24-2_armhf.deb) ... Selecting previously unselected package libsasl2-2:armhf. Unpacking libsasl2-2:armhf (from .../libsasl2-2_2.1.25.dfsg1-4_armhf.deb) ... Selecting previously unselected package libldap-2.4-2:armhf. Unpacking libldap-2.4-2:armhf (from .../libldap-2.4-2_2.4.28-1.1+rpi1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libnettle4:armhf. Unpacking libnettle4:armhf (from .../libnettle4_2.4-1_armhf.deb) ... Selecting previously unselected package libarchive12:armhf. Unpacking libarchive12:armhf (from .../libarchive12_3.0.4-1_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package librtmp0:armhf. Unpacking librtmp0:armhf (from .../librtmp0_2.4+20111222.git4e06e21-1_armhf.deb) ... Selecting previously unselected package libssh2-1:armhf. Unpacking libssh2-1:armhf (from .../libssh2-1_1.4.1-1_armhf.deb) ... Selecting previously unselected package libcurl3:armhf. Unpacking libcurl3:armhf (from .../libcurl3_7.25.0-1_armhf.deb) ... Selecting previously unselected package libcurl3-gnutls:armhf. Unpacking libcurl3-gnutls:armhf (from .../libcurl3-gnutls_7.25.0-1_armhf.deb) ... Selecting previously unselected package libexpat1:armhf. Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package procps. Unpacking procps (from .../procps_1%3a3.3.2-3_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.111_all.deb) ... Selecting previously unselected package libxmlrpc-core-c3. Unpacking libxmlrpc-core-c3 (from .../libxmlrpc-core-c3_1.16.33-3.1_armhf.deb) ... Selecting previously unselected package emacsen-common. Unpacking emacsen-common (from .../emacsen-common_1.4.23_all.deb) ... Selecting previously unselected package cmake-data. Unpacking cmake-data (from .../cmake-data_2.8.7-4_all.deb) ... Selecting previously unselected package cmake. Unpacking cmake (from .../cmake_2.8.7-4_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package libbam-dev. Unpacking libbam-dev (from .../libbam-dev_0.1.18-1_armhf.deb) ... Selecting previously unselected package libboost1.49-dev. Unpacking libboost1.49-dev (from .../libboost1.49-dev_1.49.0-2_armhf.deb) ... Selecting previously unselected package libboost-dev. Unpacking libboost-dev (from .../libboost-dev_1.49.0.1_armhf.deb) ... Selecting previously unselected package zlib1g-dev:armhf. Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-seqan-dummy. Unpacking sbuild-build-depends-seqan-dummy (from .../sbuild-build-depends-seqan-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libprocps0:armhf (1:3.3.2-3) ... Setting up libssl1.0.0:armhf (1.0.1b-1) ... Setting up libgpg-error0:armhf (1.10-3) ... Setting up libgcrypt11:armhf (1.5.0-3) ... Setting up libp11-kit0:armhf (0.12-3) ... Setting up libtasn1-3:armhf (2.12-1) ... Setting up libgnutls26:armhf (2.12.18-1) ... Setting up libkrb5support0:armhf (1.10+dfsg~beta1-2) ... Setting up libk5crypto3:armhf (1.10+dfsg~beta1-2) ... Setting up libkeyutils1:armhf (1.5.2-2) ... Setting up libkrb5-3:armhf (1.10+dfsg~beta1-2) ... Setting up libgssapi-krb5-2:armhf (1.10+dfsg~beta1-2) ... Setting up libidn11:armhf (1.24-2) ... Setting up libsasl2-2:armhf (2.1.25.dfsg1-4) ... Setting up libldap-2.4-2:armhf (2.4.28-1.1+rpi1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libnettle4:armhf (2.4-1) ... Setting up libarchive12:armhf (3.0.4-1) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up librtmp0:armhf (2.4+20111222.git4e06e21-1) ... Setting up libssh2-1:armhf (1.4.1-1) ... Setting up libcurl3:armhf (7.25.0-1) ... Setting up libcurl3-gnutls:armhf (7.25.0-1) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up procps (1:3.3.2-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode. All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up cdbs (0.4.111) ... Setting up libxmlrpc-core-c3 (1.16.33-3.1) ... Setting up emacsen-common (1.4.23) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake-data (2.8.7-4) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.7-4) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up libbam-dev (0.1.18-1) ... Setting up libboost1.49-dev (1.49.0-2) ... Setting up libboost-dev (1.49.0.1) ... Setting up zlib1g-dev:armhf (1:1.2.6.dfsg-2) ... Setting up sbuild-build-depends-seqan-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.111 cmake_2.8.7-4 cmake-data_2.8.7-4 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 emacsen-common_1.4.23 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libarchive12_3.0.4-1 libattr1_1:2.4.46-5 libbam-dev_0.1.18-1 libblkid1_2.20.1-4 libboost-dev_1.49.0.1 libboost1.49-dev_1.49.0-2 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libcurl3_7.25.0-1 libcurl3-gnutls_7.25.0-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgnutls26_2.12.18-1 libgomp1_4.7.0-1.1+rpi libgpg-error0_1.10-3 libgssapi-krb5-2_1.10+dfsg~beta1-2 libidn11_1.24-2 libk5crypto3_1.10+dfsg~beta1-2 libkeyutils1_1.5.2-2 libkrb5-3_1.10+dfsg~beta1-2 libkrb5support0_1.10+dfsg~beta1-2 libldap-2.4-2_2.4.28-1.1+rpi1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libnettle4_2.4-1 libp11-kit0_0.12-3 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libprocps0_1:3.3.2-3 libreadline6_6.2-8 librtmp0_2.4+20111222.git4e06e21-1 libsasl2-2_2.1.25.dfsg1-4 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libss2_1.42.2-2 libssh2-1_1.4.1-1 libssl1.0.0_1.0.1b-1 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtasn1-3_2.12-1 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 libxmlrpc-core-c3_1.16.33-3.1 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-seqan-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon Apr 23 21:27:37 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./seqan_1.3.1-1.dsc dpkg-source: info: extracting seqan in seqan-1.3.1 dpkg-source: info: unpacking seqan_1.3.1.orig.tar.xz dpkg-source: info: unpacking seqan_1.3.1-1.debian.tar.gz dpkg-source: info: applying samtools.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-025ce4d3-1881-4084-87be-99087b1597e6 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package seqan dpkg-buildpackage: source version 1.3.1-1 dpkg-source --before-build seqan-1.3.1 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean test -x debian/rules dh_testroot rmdir obj-arm-linux-gnueabihf rmdir: failed to remove `obj-arm-linux-gnueabihf': No such file or directory make: [cleanbuilddir] Error 1 (ignored) rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C obj-arm-linux-gnueabihf -k clean make: *** obj-arm-linux-gnueabihf: No such file or directory. Stop. make: [makefile-clean] Error 2 (ignored) rm -rf obj-arm-linux-gnueabihf dh_clean if [ -d orig ] ; then \ for header in `find orig -name "*generated_forwards.h"` ; do \ mv ${header} `echo $header | sed 's?orig/??'` ; \ done ; \ fi rm -rf orig debian/rules build-arch test -x debian/rules mkdir -p "obj-arm-linux-gnueabihf" # create backups of original *generated_forwards.h files to build twice in a row for header in `find seqan -name "*generated_forwards.h"` ; do \ mkdir -p orig/`dirname $header` ; \ cp -a $header orig/${header} ; \ done /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable cd obj-arm-linux-gnueabihf && cmake /«PKGBUILDDIR»/cmake -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_C_COMPILER:FILEPATH="cc" -DCMAKE_CXX_COMPILER:FILEPATH="g++" -DCMAKE_C_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_SKIP_RPATH=ON -DCMAKE_VERBOSE_MAKEFILE=ON -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) Determining GCC version. GCC version is g++ (Debian 4.6.3-1.1+rpi2) 4.6.3 Copyright (C) 2011 Free Software Foundation, Inc. This is free software see the source for copying conditions. There is NO warranty not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test TR1_SHARED_PTR_USE_MEMORY -- Performing Test TR1_SHARED_PTR_USE_MEMORY - Failed -- Configuring done -- Generating done -- Build files have been written to: /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /usr/bin/make -C obj-arm-linux-gnueabihf make[1]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -H/«PKGBUILDDIR»/cmake -B/«PKGBUILDDIR»/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f CMakeFiles/Seqan.dir/build.make CMakeFiles/Seqan.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles/Seqan.dir/DependInfo.cmake --color= Scanning dependencies of target Seqan make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f CMakeFiles/Seqan.dir/build.make CMakeFiles/Seqan.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for `CMakeFiles/Seqan.dir/build'. make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 0%] Built target Seqan /usr/bin/make -f apps/CMakeFiles/dfi.dir/build.make apps/CMakeFiles/dfi.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/dfi.dir/DependInfo.cmake --color= Scanning dependencies of target dfi make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/dfi.dir/build.make apps/CMakeFiles/dfi.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 7 [ 1%] Building CXX object apps/CMakeFiles/dfi.dir/«PKGBUILDDIR»/apps/dfi/dfi.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/dfi.dir/«PKGBUILDDIR»/apps/dfi/dfi.cpp.o -c /«PKGBUILDDIR»/apps/dfi/dfi.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/map.h:42, from /«PKGBUILDDIR»/seqan/misc/misc_cmdparser.h:37, from /«PKGBUILDDIR»/apps/dfi/dfi.cpp:26: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinFreq, TPred = PredMaxFreq, TAlphabet = unsigned char, TParamPredHull = seqan::String >, TParamPred = seqan::String >, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinAllSupp, TPred = PredEntropy, TAlphabet = unsigned char, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinSupp, TPred = PredEmerging, TAlphabet = unsigned char, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinAllSupp, TPred = PredEntropy, TAlphabet = seqan::SimpleType, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinFreq, TPred = PredMaxFreq, TAlphabet = seqan::SimpleType, TParamPredHull = seqan::String >, TParamPred = seqan::String >, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinSupp, TPred = PredEmerging, TAlphabet = seqan::SimpleType, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinFreq, TPred = PredMaxFreq, TAlphabet = seqan::SimpleType, TParamPredHull = seqan::String >, TParamPred = seqan::String >, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinAllSupp, TPred = PredEntropy, TAlphabet = seqan::SimpleType, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinSupp, TPred = PredEmerging, TAlphabet = seqan::SimpleType, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String > >]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i2' was declared here /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: '*((void*)(& desc)+12).seqan::Pair::i1' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/index/index_wotd.h:866:44: note: '*((void*)(& desc)+12).seqan::Pair::i1' was declared here Linking CXX executable dfi cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/dfi.dir/«PKGBUILDDIR»/apps/dfi/dfi.cpp.o -o dfi -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 7 [ 1%] Built target dfi /usr/bin/make -f apps/CMakeFiles/insegt.dir/build.make apps/CMakeFiles/insegt.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/insegt.dir/DependInfo.cmake --color= Scanning dependencies of target insegt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/insegt.dir/build.make apps/CMakeFiles/insegt.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 36 [ 2%] Building CXX object apps/CMakeFiles/insegt.dir/«PKGBUILDDIR»/apps/insegt/insegt.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/insegt.dir/«PKGBUILDDIR»/apps/insegt/insegt.cpp.o -c /«PKGBUILDDIR»/apps/insegt/insegt.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/insegt/insegt.cpp:12: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/apps/insegt/insegt.cpp:25:0: /«PKGBUILDDIR»/apps/insegt/overlap_module.h: In function 'void seqan::getIdsForRead(TAnnoIds&, seqan::FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = seqan::StringSet >, seqan::Owner > >, TSpec = void, TConfig = seqan::FragmentStoreConfig, TIntervalTree = seqan::IntervalTree, TIntervals = seqan::String, seqan::Alloc >]': /«PKGBUILDDIR»/apps/insegt/fusion.h:775:5: instantiated from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, seqan::FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = seqan::String >, TAnnoCountStore = seqan::String >, TTupleCountStore = seqan::String >, TTupleCountStore_Fusion = seqan::String >, TSpec = void, TConfig = seqan::FragmentStoreConfig]' /«PKGBUILDDIR»/apps/insegt/overlap_module.h:862:162: instantiated from here /«PKGBUILDDIR»/apps/insegt/overlap_module.h:67:13: warning: variable 'help' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/apps/insegt/insegt.cpp:20:0: /«PKGBUILDDIR»/apps/insegt/base.h: In function 'void seqan::createCombinations(TStringSet&, TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner > >]': /«PKGBUILDDIR»/apps/insegt/base.h:102:3: instantiated from 'void seqan::create_nTuple(TStringSet&, seqan::FragmentStore&, const TStringSet&, const TId&, const unsigned int&) [with TStringSet = seqan::StringSet >, seqan::Owner > >, TSpec = void, TConfig = seqan::FragmentStoreConfig, TId = unsigned int]' /«PKGBUILDDIR»/apps/insegt/fusion.h:122:47: instantiated from 'void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, seqan::FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = seqan::String >, TTupleCountStore_Fusion = seqan::String >, TSpec = void, TConfig = seqan::FragmentStoreConfig, TReadAnnoStore = seqan::String >]' /«PKGBUILDDIR»/apps/insegt/fusion.h:782:2: instantiated from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, seqan::FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = seqan::String >, TAnnoCountStore = seqan::String >, TTupleCountStore = seqan::String >, TTupleCountStore_Fusion = seqan::String >, TSpec = void, TConfig = seqan::FragmentStoreConfig]' /«PKGBUILDDIR»/apps/insegt/overlap_module.h:862:162: instantiated from here /«PKGBUILDDIR»/apps/insegt/base.h:176:7: warning: variable 'id' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/seqan/map.h:56:0, from /«PKGBUILDDIR»/apps/insegt/insegt.cpp:15: /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h: In function 'typename seqan::Value > >::Type& seqan::value(seqan::Map >&, const TKey2&) [with TValue = seqan::Pair, TSpec = const seqan::Tag, TKey2 = unsigned int, typename seqan::Value > >::Type = seqan::Pair]': /«PKGBUILDDIR»/seqan/basic/basic_aggregates.h:83:51: warning: 'val_temp.seqan::Pair::i2' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/map/map_skiplist.h:657:11: note: 'val_temp.seqan::Pair::i2' was declared here In file included from /«PKGBUILDDIR»/apps/insegt/insegt.cpp:25:0: /«PKGBUILDDIR»/seqan/sequence/sequence_interface.h: In function 'void seqan::buildAnnoCountStore(TAnnoCountStore&, seqan::FragmentStore&, TReadAnnoStore&) [with TAnnoCountStore = seqan::String >, TSpec = void, TConfig = seqan::FragmentStoreConfig, TReadAnnoStore = seqan::String >]': /«PKGBUILDDIR»/seqan/sequence/sequence_interface.h:663:54: warning: 'secReadId' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/apps/insegt/overlap_module.h:445:6: note: 'secReadId' was declared here Linking CXX executable insegt cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/insegt.dir/«PKGBUILDDIR»/apps/insegt/insegt.cpp.o -o insegt -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 36 [ 2%] Built target insegt /usr/bin/make -f apps/CMakeFiles/mason.dir/build.make apps/CMakeFiles/mason.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/mason.dir/DependInfo.cmake --color= Scanning dependencies of target mason make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/mason.dir/build.make apps/CMakeFiles/mason.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 39 [ 3%] Building CXX object apps/CMakeFiles/mason.dir/«PKGBUILDDIR»/apps/mason/mason.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/mason.dir/«PKGBUILDDIR»/apps/mason/mason.cpp.o -c /«PKGBUILDDIR»/apps/mason/mason.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/mason/mason.cpp:43: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable mason cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/mason.dir/«PKGBUILDDIR»/apps/mason/mason.cpp.o -o mason -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 39 [ 3%] Built target mason /usr/bin/make -f apps/CMakeFiles/micro_razers.dir/build.make apps/CMakeFiles/micro_razers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= Scanning dependencies of target micro_razers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/micro_razers.dir/build.make apps/CMakeFiles/micro_razers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 40 [ 4%] Building CXX object apps/CMakeFiles/micro_razers.dir/«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/micro_razers.dir/«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp.o -c /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:28, from /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:37: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:39:0: /«PKGBUILDDIR»/apps/micro_razers/../razers/paramChooser.h: In function 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]': /«PKGBUILDDIR»/apps/micro_razers/../razers/paramChooser.h:1140:3: instantiated from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:580:40: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/paramChooser.h:507:11: warning: variable 'totalK' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:37:0: /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h: In function 'void seqan::compactMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool, TSwift&) [with TMatches = seqan::String >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TSwift = seqan::Nothing]': /«PKGBUILDDIR»/apps/micro_razers/../razers/outputFormat.h:661:4: instantiated from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenomeNames = seqan::StringSet > >, TReads = seqan::StringSet >, seqan::Owner > >, TReadNames = seqan::StringSet > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, seqan::CharString = seqan::String >]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:184:3: instantiated from 'int mapMicroRNAReads(const char*, const char**, const char*, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:660:86: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:998:12: warning: variable 'ditBeg' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h: In function 'void seqan::compactMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool, TSwift&) [with TMatches = seqan::String >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TSwift = seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, seqan::Swift > > >]': /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1677:7: instantiated from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String, seqan::Alloc >, TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1976:5: instantiated from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::UngappedShape<0u> >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2133:131: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::UngappedShape<0u> >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2192:141: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:165:102: instantiated from 'int mapMicroRNAReads(const char*, const char**, const char*, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:660:86: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:998:12: warning: variable 'ditBeg' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h: In function 'void seqan::compactMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool, TSwift&) [with TMatches = seqan::String >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TSwift = seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, const seqan::Tag > >, seqan::Swift > > >]': /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1677:7: instantiated from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String, seqan::Alloc >, TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1976:5: instantiated from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::OneGappedShape>, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2133:131: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::OneGappedShape>, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2195:142: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:165:102: instantiated from 'int mapMicroRNAReads(const char*, const char**, const char*, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:660:86: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:998:12: warning: variable 'ditBeg' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h: In function 'void seqan::compactMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool, TSwift&) [with TMatches = seqan::String >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TSwift = seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, const seqan::Tag > >, seqan::Swift > > >]': /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1677:7: instantiated from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String, seqan::Alloc >, TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1976:5: instantiated from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::GappedShape > >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2133:131: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::GappedShape > >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2198:139: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:165:102: instantiated from 'int mapMicroRNAReads(const char*, const char**, const char*, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:660:86: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:998:12: warning: variable 'ditBeg' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h: In function 'void seqan::compactMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool, TSwift&) [with TMatches = seqan::String >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TSwift = seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, seqan::Swift > > >]': /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1677:7: instantiated from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String, seqan::Alloc >, TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1976:5: instantiated from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::UngappedShape<0u> >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2133:131: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::UngappedShape<0u> >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2203:134: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:165:102: instantiated from 'int mapMicroRNAReads(const char*, const char**, const char*, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:660:86: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:998:12: warning: variable 'ditBeg' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h: In function 'void seqan::compactMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool, TSwift&) [with TMatches = seqan::String >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TSwift = seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, const seqan::Tag > >, seqan::Swift > > >]': /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1677:7: instantiated from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String, seqan::Alloc >, TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1976:5: instantiated from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::OneGappedShape>, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2133:131: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::OneGappedShape>, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2206:135: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:165:102: instantiated from 'int mapMicroRNAReads(const char*, const char**, const char*, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:660:86: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:998:12: warning: variable 'ditBeg' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h: In function 'void seqan::compactMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool, TSwift&) [with TMatches = seqan::String >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TSwift = seqan::Pattern >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, const seqan::Tag > >, seqan::Swift > > >]': /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1677:7: instantiated from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String, seqan::Alloc >, TReadIndex = seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:1976:5: instantiated from 'int seqan::mapSingleReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::GappedShape > >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2133:131: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&, const TShape&, seqan::Swift) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShape = seqan::Shape, seqan::GappedShape > >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:2209:132: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:165:102: instantiated from 'int mapMicroRNAReads(const char*, const char**, const char*, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp:660:86: instantiated from here /«PKGBUILDDIR»/apps/micro_razers/../razers/razers.h:998:12: warning: variable 'ditBeg' set but not used [-Wunused-but-set-variable] Linking CXX executable micro_razers cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/micro_razers.dir/«PKGBUILDDIR»/apps/micro_razers/micro_razers.cpp.o -o micro_razers -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 40 [ 4%] Built target micro_razers /usr/bin/make -f apps/CMakeFiles/pair_align.dir/build.make apps/CMakeFiles/pair_align.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/pair_align.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/pair_align.dir/build.make apps/CMakeFiles/pair_align.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 43 [ 5%] Building CXX object apps/CMakeFiles/pair_align.dir/«PKGBUILDDIR»/apps/pair_align/pair_align.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/pair_align.dir/«PKGBUILDDIR»/apps/pair_align/pair_align.cpp.o -c /«PKGBUILDDIR»/apps/pair_align/pair_align.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/pair_align/pair_align.cpp:18: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable pair_align cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/pair_align.dir/«PKGBUILDDIR»/apps/pair_align/pair_align.cpp.o -o pair_align -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 43 [ 5%] Built target pair_align /usr/bin/make -f apps/CMakeFiles/param_chooser.dir/build.make apps/CMakeFiles/param_chooser.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target param_chooser make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/param_chooser.dir/build.make apps/CMakeFiles/param_chooser.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 44 [ 6%] Building CXX object apps/CMakeFiles/param_chooser.dir/«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/param_chooser.dir/«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp.o -c /«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp:36: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp:40:0: /«PKGBUILDDIR»/apps/param_chooser/../splazers/paramChooser.h: In function 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]': /«PKGBUILDDIR»/apps/param_chooser/../splazers/paramChooser.h:1140:3: instantiated from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp:340:43: instantiated from here /«PKGBUILDDIR»/apps/param_chooser/../splazers/paramChooser.h:507:11: warning: variable 'totalK' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/apps/param_chooser/../splazers/paramChooser.h:33:0, from /«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp:40: /«PKGBUILDDIR»/apps/param_chooser/../splazers/readSimulator.h: In function 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = seqan::StringSet >, seqan::Owner > >, TReadIDs = seqan::StringSet > >, TGenomeSet = seqan::StringSet, seqan::Alloc > >, TDistr = seqan::String]': /«PKGBUILDDIR»/apps/param_chooser/../splazers/paramChooser.h:700:2: instantiated from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]' /«PKGBUILDDIR»/apps/param_chooser/../splazers/paramChooser.h:1140:3: instantiated from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp:340:43: instantiated from here /«PKGBUILDDIR»/apps/param_chooser/../splazers/readSimulator.h:233:7: warning: variable 'lastOp' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/param_chooser/../splazers/readSimulator.h:178:6: warning: variable 'fragmentSize' set but not used [-Wunused-but-set-variable] Linking CXX executable param_chooser cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/param_chooser.dir/«PKGBUILDDIR»/apps/param_chooser/param_chooser.cpp.o -o param_chooser -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 44 [ 6%] Built target param_chooser /usr/bin/make -f apps/CMakeFiles/rabema.dir/build.make apps/CMakeFiles/rabema.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/rabema.dir/DependInfo.cmake --color= Scanning dependencies of target rabema make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/rabema.dir/build.make apps/CMakeFiles/rabema.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 45 [ 7%] Building CXX object apps/CMakeFiles/rabema.dir/«PKGBUILDDIR»/apps/rabema/rabema.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/rabema.dir/«PKGBUILDDIR»/apps/rabema/rabema.cpp.o -c /«PKGBUILDDIR»/apps/rabema/rabema.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/rabema/rabema.h:28, from /«PKGBUILDDIR»/apps/rabema/rabema.cpp:33: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/apps/rabema/evaluation.h:35:0, from /«PKGBUILDDIR»/apps/rabema/rabema.cpp:37: /«PKGBUILDDIR»/apps/rabema/wit_store.h: In function 'void loadWitFile(WitStore&, TFragmentStore&, const CharString&) [with TFragmentStore = seqan::FragmentStore<>, seqan::CharString = seqan::String >]': /«PKGBUILDDIR»/apps/rabema/evaluation.h:849:57: instantiated from here /«PKGBUILDDIR»/apps/rabema/wit_store.h:272:10: warning: variable 'wasInSam' set but not used [-Wunused-but-set-variable] Linking CXX executable rabema cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/rabema.dir/«PKGBUILDDIR»/apps/rabema/rabema.cpp.o -o rabema -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 45 [ 7%] Built target rabema /usr/bin/make -f apps/CMakeFiles/razers.dir/build.make apps/CMakeFiles/razers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/razers.dir/DependInfo.cmake --color= Scanning dependencies of target razers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/razers.dir/build.make apps/CMakeFiles/razers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 7%] Building CXX object apps/CMakeFiles/razers.dir/«PKGBUILDDIR»/apps/razers/razers.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/razers.dir/«PKGBUILDDIR»/apps/razers/razers.cpp.o -c /«PKGBUILDDIR»/apps/razers/razers.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/map.h:42, from /«PKGBUILDDIR»/seqan/misc/misc_cmdparser.h:37, from /«PKGBUILDDIR»/apps/razers/razers.cpp:48: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/apps/razers/razers.cpp:51:0: /«PKGBUILDDIR»/apps/razers/paramChooser.h: In function 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]': /«PKGBUILDDIR»/apps/razers/paramChooser.h:1140:3: instantiated from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/razers/razers.cpp:590:40: instantiated from here /«PKGBUILDDIR»/apps/razers/paramChooser.h:507:11: warning: variable 'totalK' set but not used [-Wunused-but-set-variable] Linking CXX executable razers cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/razers.dir/«PKGBUILDDIR»/apps/razers/razers.cpp.o -o razers -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 7%] Built target razers /usr/bin/make -f apps/CMakeFiles/razers2.dir/build.make apps/CMakeFiles/razers2.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/razers2.dir/DependInfo.cmake --color= Scanning dependencies of target razers2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/razers2.dir/build.make apps/CMakeFiles/razers2.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 46 [ 8%] Building CXX object apps/CMakeFiles/razers2.dir/«PKGBUILDDIR»/apps/razers2/razers.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/razers2.dir/«PKGBUILDDIR»/apps/razers2/razers.cpp.o -c /«PKGBUILDDIR»/apps/razers2/razers.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/map.h:42, from /«PKGBUILDDIR»/seqan/misc/misc_cmdparser.h:37, from /«PKGBUILDDIR»/apps/razers2/razers.cpp:45: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/apps/razers2/razers.cpp:48:0: /«PKGBUILDDIR»/apps/razers2/paramChooser.h: In function 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]': /«PKGBUILDDIR»/apps/razers2/paramChooser.h:1139:3: instantiated from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/razers2/razers.cpp:546:40: instantiated from here /«PKGBUILDDIR»/apps/razers2/paramChooser.h:507:11: warning: variable 'totalK' set but not used [-Wunused-but-set-variable] Linking CXX executable razers2 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/razers2.dir/«PKGBUILDDIR»/apps/razers2/razers.cpp.o -o razers2 -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 46 [ 8%] Built target razers2 /usr/bin/make -f apps/CMakeFiles/rep_sep.dir/build.make apps/CMakeFiles/rep_sep.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= Scanning dependencies of target rep_sep make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/rep_sep.dir/build.make apps/CMakeFiles/rep_sep.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 47 [ 9%] Building CXX object apps/CMakeFiles/rep_sep.dir/«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/rep_sep.dir/«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp.o -c /«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/map.h:42, from /«PKGBUILDDIR»/seqan/misc/misc_cmdparser.h:37, from /«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp:27: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 /«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp: In function 'int main(int, const char**)': /«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp:111:11: warning: variable 'numberOfReads' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/seqan/store.h:70:0, from /«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp:29: /«PKGBUILDDIR»/seqan/store/store_io.h: In function 'void seqan::read(TFile&, seqan::FragmentStore&, Amos) [with TFile = _IO_FILE*, TSpec = void, TConfig = seqan::FragmentStoreConfig, seqan::Amos = const seqan::Tag]': /«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp:114:38: instantiated from here /«PKGBUILDDIR»/seqan/store/store_io.h:296:9: warning: variable 'id' set but not used [-Wunused-but-set-variable] Linking CXX executable rep_sep cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/rep_sep.dir/«PKGBUILDDIR»/apps/rep_sep/rep_sep.cpp.o -o rep_sep -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 47 [ 9%] Built target rep_sep /usr/bin/make -f apps/CMakeFiles/sak.dir/build.make apps/CMakeFiles/sak.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/sak.dir/DependInfo.cmake --color= Scanning dependencies of target sak make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/sak.dir/build.make apps/CMakeFiles/sak.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 49 [ 10%] Building CXX object apps/CMakeFiles/sak.dir/«PKGBUILDDIR»/apps/sak/sak.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/sak.dir/«PKGBUILDDIR»/apps/sak/sak.cpp.o -c /«PKGBUILDDIR»/apps/sak/sak.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/sak/sak.cpp:49: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable sak cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/sak.dir/«PKGBUILDDIR»/apps/sak/sak.cpp.o -o sak -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 49 [ 10%] Built target sak /usr/bin/make -f apps/CMakeFiles/seqan_tcoffee.dir/build.make apps/CMakeFiles/seqan_tcoffee.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_tcoffee make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/seqan_tcoffee.dir/build.make apps/CMakeFiles/seqan_tcoffee.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 52 [ 11%] Building CXX object apps/CMakeFiles/seqan_tcoffee.dir/«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/seqan_tcoffee.dir/«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp.o -c /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:19: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/refinement.h:64:0, from /«PKGBUILDDIR»/seqan/graph_msa.h:40, from /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:20: /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:163:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FrequencyCounting = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:115:2: instantiated from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:230:3: instantiated from 'void _initMsaParams(seqan::CommandLineParser&, TScore&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:250:34: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:163:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FrequencyCounting = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:115:2: instantiated from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:230:3: instantiated from 'void _initMsaParams(seqan::CommandLineParser&, TScore&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:266:34: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:163:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FrequencyCounting = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:115:2: instantiated from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:230:3: instantiated from 'void _initMsaParams(seqan::CommandLineParser&, TScore&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:39: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:163:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FrequencyCounting = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:115:2: instantiated from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:230:3: instantiated from 'void _initMsaParams(seqan::CommandLineParser&, TScore&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:250:34: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:163:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FrequencyCounting = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:115:2: instantiated from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:230:3: instantiated from 'void _initMsaParams(seqan::CommandLineParser&, TScore&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:266:34: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:163:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FrequencyCounting = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:115:2: instantiated from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:230:3: instantiated from 'void _initMsaParams(seqan::CommandLineParser&, TScore&) [with TAlphabet = seqan::SimpleType, TScore = seqan::Score >]' /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:39: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/seqan/graph_msa.h:55:0, from /«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp:20: /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::String, TAlignConfig = seqan::AlignConfig<>, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::Nothing, TAlignConfig = seqan::AlignConfig, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::String, TAlignConfig = seqan::AlignConfig<>, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::Nothing, TAlignConfig = seqan::AlignConfig, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::String, TAlignConfig = seqan::AlignConfig<>, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::Nothing, TAlignConfig = seqan::AlignConfig, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::String, TAlignConfig = seqan::AlignConfig<>, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::Nothing, TAlignConfig = seqan::AlignConfig, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::String, TAlignConfig = seqan::AlignConfig<>, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::Nothing, TAlignConfig = seqan::AlignConfig, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score, seqan::Blosum62_> >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::String, TAlignConfig = seqan::AlignConfig<>, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h: In function 'void seqan::appendSegmentMatches(const seqan::StringSet >&, const seqan::String&, const TScore&, TSegmentMatches&, TScoreValues&, TDistance&, const TAlignConfig&, GlobalPairwiseLibrary) [with TString = seqan::String, seqan::Alloc >, TSpec = const seqan::Tag, TSize2 = unsigned int, TSpec2 = seqan::Alloc, TScore = seqan::Score, seqan::Blosum62_> >, TSegmentMatches = seqan::String >, TScoreValues = seqan::String, TDistance = seqan::Nothing, TAlignConfig = seqan::AlignConfig, seqan::GlobalPairwiseLibrary = const seqan::Tag]': /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:299:2: warning: 'initialDir' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/seqan/graph_align/graph_align_gotoh.h:292:16: note: 'initialDir' was declared here Linking CXX executable seqan_tcoffee cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/seqan_tcoffee.dir/«PKGBUILDDIR»/apps/seqan_tcoffee/seqan_tcoffee.cpp.o -o seqan_tcoffee -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 52 [ 11%] Built target seqan_tcoffee /usr/bin/make -f apps/CMakeFiles/seqcons.dir/build.make apps/CMakeFiles/seqcons.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/seqcons.dir/DependInfo.cmake --color= Scanning dependencies of target seqcons make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/seqcons.dir/build.make apps/CMakeFiles/seqcons.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 53 [ 12%] Building CXX object apps/CMakeFiles/seqcons.dir/«PKGBUILDDIR»/apps/seqcons/seqcons.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/seqcons.dir/«PKGBUILDDIR»/apps/seqcons/seqcons.cpp.o -c /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp:23: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/store.h:70:0, from /«PKGBUILDDIR»/seqan/consensus.h:44, from /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp:24: /«PKGBUILDDIR»/seqan/store/store_io.h: In function 'void seqan::read(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_fstream, TSpec = void, TConfig = seqan::FragmentStoreConfig, seqan::Amos = const seqan::Tag]': /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp:163:3: instantiated from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>, TSize = unsigned int]' /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp:242:56: instantiated from here /«PKGBUILDDIR»/seqan/store/store_io.h:296:9: warning: variable 'id' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/seqan/refinement.h:64:0, from /«PKGBUILDDIR»/seqan/consensus.h:41, from /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp:24: /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:246:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, const TScore&, ReScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::ReScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/consensus/consensus_base.h:469:2: instantiated from 'void seqan::consensusAlignment(seqan::Graph >&, seqan::String >&, const TConfigOptions&) [with TStringSet = seqan::StringSet >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TSize = unsigned int, TConfigOptions = seqan::ConsensusOptions]' /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp:274:48: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String >, TSetSpec = seqan::Dependent >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:246:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, const TScore&, ReScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::ReScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/consensus/consensus_base.h:469:2: instantiated from 'void seqan::consensusAlignment(seqan::Graph >&, seqan::String >&, const TConfigOptions&) [with TStringSet = seqan::StringSet >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TSize = unsigned int, TConfigOptions = seqan::ConsensusOptions]' /«PKGBUILDDIR»/apps/seqcons/seqcons.cpp:274:48: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] Linking CXX executable seqcons cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/seqcons.dir/«PKGBUILDDIR»/apps/seqcons/seqcons.cpp.o -o seqcons -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 53 [ 12%] Built target seqcons /usr/bin/make -f apps/CMakeFiles/snp_store.dir/build.make apps/CMakeFiles/snp_store.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/snp_store.dir/DependInfo.cmake --color= Scanning dependencies of target snp_store make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/snp_store.dir/build.make apps/CMakeFiles/snp_store.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 12%] Building CXX object apps/CMakeFiles/snp_store.dir/«PKGBUILDDIR»/apps/snp_store/snp_store.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/snp_store.dir/«PKGBUILDDIR»/apps/snp_store/snp_store.cpp.o -c /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp:30: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp: In function 'int readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, seqan::String >&, seqan::StringSet&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&) [with TFile = std::basic_fstream*, TFragmentStore = seqan::FragmentStore, TReadCounts = seqan::String >, TCigarStr = seqan::String >, TGenome = seqan::String >, TGenomeIdMap = std::map >, unsigned int>, TContigPos = int, TSize = unsigned int, TValue = int, TOptions = seqan::SNPCallingOptions<>]': /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp:1392:6: instantiated from 'int detectSNPs(const char*, seqan::String > >&, seqan::String > >&, seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp:2048:73: instantiated from here /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp:876:43: warning: variable 'unique' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp:44:0: /«PKGBUILDDIR»/apps/snp_store/snp_store.h: In function 'bool seqan::_doSnpCall(TCounts&, TCounts&, TQualities&, TQualities&, int&, TOptions&, seqan::SingleBaseVariant&, seqan::MaqMethod&) [with TCounts = seqan::String >, TQualities = seqan::String > >, TOptions = seqan::SNPCallingOptions<>, seqan::MaqMethod = const seqan::Tag]': /«PKGBUILDDIR»/apps/snp_store/snp_store.h:2482:4: instantiated from 'void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore, TReadCigars = seqan::StringSet > >, TReadCounts = seqan::String >, TGenomeName = seqan::String >, TFile = std::basic_ofstream, TOptions = seqan::SNPCallingOptions<>, typename TFragmentStore::TContigPos = int]' /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp:1487:7: instantiated from 'int detectSNPs(const char*, seqan::String > >&, seqan::String > >&, seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /«PKGBUILDDIR»/apps/snp_store/snp_store.cpp:2048:73: instantiated from here /«PKGBUILDDIR»/apps/snp_store/snp_store.h:1181:7: warning: variable 'genotypeCalled2' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/snp_store/snp_store.h:1181:38: warning: variable 'qCall2' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/snp_store/snp_store.h:1260:11: warning: variable 'homo1' set but not used [-Wunused-but-set-variable] Linking CXX executable snp_store cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/snp_store.dir/«PKGBUILDDIR»/apps/snp_store/snp_store.cpp.o -o snp_store -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 12%] Built target snp_store /usr/bin/make -f apps/CMakeFiles/splazers.dir/build.make apps/CMakeFiles/splazers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/splazers.dir/DependInfo.cmake --color= Scanning dependencies of target splazers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/splazers.dir/build.make apps/CMakeFiles/splazers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 55 [ 13%] Building CXX object apps/CMakeFiles/splazers.dir/«PKGBUILDDIR»/apps/splazers/splazers.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/splazers.dir/«PKGBUILDDIR»/apps/splazers/splazers.cpp.o -c /«PKGBUILDDIR»/apps/splazers/splazers.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/map.h:42, from /«PKGBUILDDIR»/seqan/misc/misc_cmdparser.h:37, from /«PKGBUILDDIR»/apps/splazers/splazers.cpp:48: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/apps/splazers/splazers.cpp:51:0: /«PKGBUILDDIR»/apps/splazers/paramChooser.h: In function 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String]': /«PKGBUILDDIR»/apps/splazers/paramChooser.h:1140:3: instantiated from 'bool seqan::chooseParams(seqan::RazerSOptions&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:617:41: instantiated from here /«PKGBUILDDIR»/apps/splazers/paramChooser.h:507:11: warning: variable 'totalK' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/apps/splazers/splazers.cpp:61:0: /«PKGBUILDDIR»/apps/splazers/razers_spliced.h: In function 'void seqan::compactAndCountSplicedMatches(TMatches&, TCounts&, seqan::RazerSOptions&, bool) [with TMatches = seqan::String >, TCounts = seqan::String, TSpec = seqan::RazerSSpec<>]': /«PKGBUILDDIR»/apps/splazers/outputFormat.h:762:4: instantiated from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenomeNames = seqan::StringSet > >, TReads = seqan::StringSet >, seqan::Owner > >, TReadNames = seqan::StringSet > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, seqan::CharString = seqan::String >]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:253:3: instantiated from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>, seqan::CharString = seqan::String >]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:651:81: instantiated from here /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:303:6: warning: variable 'lastPairId' set but not used [-Wunused-but-set-variable] In file included from /«PKGBUILDDIR»/apps/splazers/splazers.cpp:61:0: /«PKGBUILDDIR»/apps/splazers/razers_spliced.h: In function 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TPattern&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobalHamming, seqan::LongestPrefix) [with TMatch = seqan::ReadMatch, TGenome = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TPattern = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TSpec = seqan::RazerSSpec<>, seqan::SwiftSemiGlobalHamming = seqan::Tag >]': /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1940:5: instantiated from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String >, TOriReadSet = seqan::StringSet >, seqan::Owner > >, TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1751:5: instantiated from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >, TReadSet_ = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShapeL = seqan::Shape, seqan::UngappedShape<0u> >, TShapeR = seqan::Shape, seqan::UngappedShape<0u> >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:2329:161: instantiated from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/razers.h:2188:118: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:230:99: instantiated from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>, seqan::CharString = seqan::String >]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:651:81: instantiated from here /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:730:11: warning: variable 'minSeedErrors' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/splazers/razers_spliced.h: In function 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TPattern&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobalHamming, seqan::LongestSuffix) [with TMatch = seqan::ReadMatch, TGenome = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TPattern = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TSpec = seqan::RazerSSpec<>, seqan::SwiftSemiGlobalHamming = seqan::Tag >]': /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1984:6: instantiated from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String >, TOriReadSet = seqan::StringSet >, seqan::Owner > >, TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1751:5: instantiated from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >, TReadSet_ = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShapeL = seqan::Shape, seqan::UngappedShape<0u> >, TShapeR = seqan::Shape, seqan::UngappedShape<0u> >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:2329:161: instantiated from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/razers.h:2188:118: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:230:99: instantiated from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>, seqan::CharString = seqan::String >]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:651:81: instantiated from here /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:848:11: warning: variable 'minSeedErrors' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/splazers/razers_spliced.h: In function 'bool seqan::findBestSplitPosition(TLongerSegment&, TShorterSegment&, TSize&, TSize&, TErrors&, TErrors&, int&, TOptions&, char, seqan::SwiftSemiGlobalHamming) [with TSize = short int, TLongerSegment = seqan::Segment >, seqan::InfixSegment>, TShorterSegment = seqan::Segment >, seqan::InfixSegment>, TErrors = short unsigned int, TOptions = seqan::RazerSOptions<>, seqan::SwiftSemiGlobalHamming = seqan::Tag >]': /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1411:155: instantiated from 'bool seqan::combineLeftRight(TMatch&, TMatch&, const TOriRead&, TGenome&, seqan::RazerSOptions&, char, seqan::SwiftSemiGlobalHamming) [with TMatch = seqan::ReadMatch, TOriRead = seqan::Segment >, seqan::InfixSegment>, TGenome = seqan::String >, TSpec = seqan::RazerSSpec<>, seqan::SwiftSemiGlobalHamming = seqan::Tag >]' /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:2032:6: instantiated from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >, TGenome = seqan::String >, TOriReadSet = seqan::StringSet >, seqan::Owner > >, TReadIndexL = seqan::Index >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TReadIndexR = seqan::Index >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0u> >, const seqan::Tag > >, TSwiftSpec = seqan::Tag >, TVerifier = seqan::String >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1751:5: instantiated from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TCounts&, seqan::RazerSOptions&, const TShapeL&, const TShapeR&, seqan::Swift) [with TMatches = seqan::String >, TReadSet_ = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>, TShapeL = seqan::Shape, seqan::UngappedShape<0u> >, TShapeR = seqan::Shape, seqan::UngappedShape<0u> >, TSwiftSpec = seqan::Tag >]' /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:2329:161: instantiated from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/razers.h:2188:118: instantiated from 'int seqan::mapReads(TMatches&, seqan::StringSet > >&, seqan::StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, seqan::RazerSOptions&) [with TMatches = seqan::String >, TReadSet = seqan::StringSet >, seqan::Owner > >, TCounts = seqan::String >, TSpec = seqan::RazerSSpec<>]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:230:99: instantiated from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>, seqan::CharString = seqan::String >]' /«PKGBUILDDIR»/apps/splazers/splazers.cpp:651:81: instantiated from here /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1501:6: warning: variable 'bestLErrors' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/apps/splazers/razers_spliced.h:1502:6: warning: variable 'bestRErrors' set but not used [-Wunused-but-set-variable] Linking CXX executable splazers cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/splazers.dir/«PKGBUILDDIR»/apps/splazers/splazers.cpp.o -o splazers -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 55 [ 13%] Built target splazers /usr/bin/make -f apps/CMakeFiles/stellar.dir/build.make apps/CMakeFiles/stellar.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/stellar.dir/DependInfo.cmake --color= Scanning dependencies of target stellar make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/stellar.dir/build.make apps/CMakeFiles/stellar.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 56 [ 14%] Building CXX object apps/CMakeFiles/stellar.dir/«PKGBUILDDIR»/apps/stellar/stellar.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/stellar.dir/«PKGBUILDDIR»/apps/stellar/stellar.cpp.o -c /«PKGBUILDDIR»/apps/stellar/stellar.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/apps/stellar/stellar.cpp:23: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 /«PKGBUILDDIR»/apps/stellar/stellar.cpp: In function 'int _stellarOnOne(TSequence&, TId&, TPattern&, TQueries&, seqan::StringSet&, bool, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc >, TId = seqan::String >, TPattern = seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >, TQueries = seqan::StringSet, seqan::Alloc > >]': /«PKGBUILDDIR»/apps/stellar/stellar.cpp:157:4: instantiated from 'int _stellarOnAll(seqan::StringSet > >&, seqan::StringSet&, seqan::StringSet > >&, seqan::StringSet&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc >, TId = seqan::String >]' /«PKGBUILDDIR»/apps/stellar/stellar.cpp:531:83: instantiated from here /«PKGBUILDDIR»/apps/stellar/stellar.cpp:43:9: warning: variable 'numSwiftHits' set but not used [-Wunused-but-set-variable] Linking CXX executable stellar cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/stellar.dir/«PKGBUILDDIR»/apps/stellar/stellar.cpp.o -o stellar -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 56 [ 14%] Built target stellar /usr/bin/make -f apps/CMakeFiles/tree_recon.dir/build.make apps/CMakeFiles/tree_recon.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= Scanning dependencies of target tree_recon make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f apps/CMakeFiles/tree_recon.dir/build.make apps/CMakeFiles/tree_recon.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 14%] Building CXX object apps/CMakeFiles/tree_recon.dir/«PKGBUILDDIR»/apps/tree_recon/tree_recon.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tree_recon.dir/«PKGBUILDDIR»/apps/tree_recon/tree_recon.cpp.o -c /«PKGBUILDDIR»/apps/tree_recon/tree_recon.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/apps/tree_recon/tree_recon.cpp:18: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tree_recon cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 CMakeFiles/tree_recon.dir/«PKGBUILDDIR»/apps/tree_recon/tree_recon.cpp.o -o tree_recon -rdynamic -L/«PKGBUILDDIR»/lib -lz -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 14%] Built target tree_recon /usr/bin/make -f demos/CMakeFiles/alignment.dir/build.make demos/CMakeFiles/alignment.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/alignment.dir/DependInfo.cmake --color= Scanning dependencies of target alignment make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/alignment.dir/build.make demos/CMakeFiles/alignment.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 1 [ 15%] Building CXX object demos/CMakeFiles/alignment.dir/«PKGBUILDDIR»/demos/alignment.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/alignment.dir/«PKGBUILDDIR»/demos/alignment.cpp.o -c /«PKGBUILDDIR»/demos/alignment.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/alignment.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable alignment cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/alignment.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/alignment.dir/«PKGBUILDDIR»/demos/alignment.cpp.o -o alignment -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 1 [ 15%] Built target alignment /usr/bin/make -f demos/CMakeFiles/alignment_local.dir/build.make demos/CMakeFiles/alignment_local.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/alignment_local.dir/DependInfo.cmake --color= Scanning dependencies of target alignment_local make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/alignment_local.dir/build.make demos/CMakeFiles/alignment_local.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 2 [ 16%] Building CXX object demos/CMakeFiles/alignment_local.dir/«PKGBUILDDIR»/demos/alignment_local.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/alignment_local.dir/«PKGBUILDDIR»/demos/alignment_local.cpp.o -c /«PKGBUILDDIR»/demos/alignment_local.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/alignment_local.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable alignment_local cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/alignment_local.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/alignment_local.dir/«PKGBUILDDIR»/demos/alignment_local.cpp.o -o alignment_local -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 2 [ 16%] Built target alignment_local /usr/bin/make -f demos/CMakeFiles/alignment_msa.dir/build.make demos/CMakeFiles/alignment_msa.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/alignment_msa.dir/DependInfo.cmake --color= Scanning dependencies of target alignment_msa make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/alignment_msa.dir/build.make demos/CMakeFiles/alignment_msa.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 3 [ 17%] Building CXX object demos/CMakeFiles/alignment_msa.dir/«PKGBUILDDIR»/demos/alignment_msa.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/alignment_msa.dir/«PKGBUILDDIR»/demos/alignment_msa.cpp.o -c /«PKGBUILDDIR»/demos/alignment_msa.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/alignment_msa.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/refinement.h:64:0, from /«PKGBUILDDIR»/seqan/graph_align.h:39, from /«PKGBUILDDIR»/seqan/align.h:47, from /«PKGBUILDDIR»/demos/alignment_msa.cpp:3: /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:323:23: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, TStringSet1&, TNames&, const seqan::MsaOptions&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TStringSet1 = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TNames = seqan::String > >, TAlphabet = seqan::SimpleType, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:387:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, const TScore&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:401:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Align&, const TScore&) [with TSource = seqan::String, seqan::Alloc >, TSpec = seqan::ArrayGaps, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/demos/alignment_msa.cpp:29:30: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:323:23: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, TStringSet1&, TNames&, const seqan::MsaOptions&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TStringSet1 = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TNames = seqan::String > >, TAlphabet = seqan::SimpleType, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:387:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, const TScore&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:401:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Align&, const TScore&) [with TSource = seqan::String, seqan::Alloc >, TSpec = seqan::ArrayGaps, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/demos/alignment_msa.cpp:29:30: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] Linking CXX executable alignment_msa cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/alignment_msa.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/alignment_msa.dir/«PKGBUILDDIR»/demos/alignment_msa.cpp.o -o alignment_msa -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 3 [ 17%] Built target alignment_msa /usr/bin/make -f demos/CMakeFiles/allocator.dir/build.make demos/CMakeFiles/allocator.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/allocator.dir/DependInfo.cmake --color= Scanning dependencies of target allocator make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/allocator.dir/build.make demos/CMakeFiles/allocator.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 4 [ 18%] Building CXX object demos/CMakeFiles/allocator.dir/«PKGBUILDDIR»/demos/allocator.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/allocator.dir/«PKGBUILDDIR»/demos/allocator.cpp.o -c /«PKGBUILDDIR»/demos/allocator.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/allocator.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable allocator cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/allocator.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/allocator.dir/«PKGBUILDDIR»/demos/allocator.cpp.o -o allocator -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 4 [ 18%] Built target allocator /usr/bin/make -f demos/CMakeFiles/alphabet.dir/build.make demos/CMakeFiles/alphabet.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/alphabet.dir/DependInfo.cmake --color= Scanning dependencies of target alphabet make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/alphabet.dir/build.make demos/CMakeFiles/alphabet.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 18%] Building CXX object demos/CMakeFiles/alphabet.dir/«PKGBUILDDIR»/demos/alphabet.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/alphabet.dir/«PKGBUILDDIR»/demos/alphabet.cpp.o -c /«PKGBUILDDIR»/demos/alphabet.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/alphabet.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable alphabet cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/alphabet.dir/«PKGBUILDDIR»/demos/alphabet.cpp.o -o alphabet -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 18%] Built target alphabet /usr/bin/make -f demos/CMakeFiles/annotation_converter.dir/build.make demos/CMakeFiles/annotation_converter.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/annotation_converter.dir/DependInfo.cmake --color= Scanning dependencies of target annotation_converter make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/annotation_converter.dir/build.make demos/CMakeFiles/annotation_converter.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 5 [ 19%] Building CXX object demos/CMakeFiles/annotation_converter.dir/«PKGBUILDDIR»/demos/annotation_converter.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/annotation_converter.dir/«PKGBUILDDIR»/demos/annotation_converter.cpp.o -c /«PKGBUILDDIR»/demos/annotation_converter.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/store.h:36, from /«PKGBUILDDIR»/demos/annotation_converter.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable annotation_converter cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/annotation_converter.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/annotation_converter.dir/«PKGBUILDDIR»/demos/annotation_converter.cpp.o -o annotation_converter -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 5 [ 19%] Built target annotation_converter /usr/bin/make -f demos/CMakeFiles/blast_report.dir/build.make demos/CMakeFiles/blast_report.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/blast_report.dir/DependInfo.cmake --color= Scanning dependencies of target blast_report make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/blast_report.dir/build.make demos/CMakeFiles/blast_report.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 6 [ 20%] Building CXX object demos/CMakeFiles/blast_report.dir/«PKGBUILDDIR»/demos/blast_report.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/blast_report.dir/«PKGBUILDDIR»/demos/blast_report.cpp.o -c /«PKGBUILDDIR»/demos/blast_report.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/seqan/blast.h:42, from /«PKGBUILDDIR»/demos/blast_report.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/blast.h:54:0, from /«PKGBUILDDIR»/demos/blast_report.cpp:3: /«PKGBUILDDIR»/seqan/blast/blast_hsp.h: In function 'typename seqan::Position::Type seqan::_parseBlastHsp(TFile&, TChar&, seqan::BlastHsp, seqan::FullInfo>&) [with TFile = std::basic_fstream, TChar = char, TSpec = seqan::TagBlastN_, typename seqan::Position::Type = std::fpos<__mbstate_t>]': /«PKGBUILDDIR»/seqan/blast/blast_stream_hsp_iterator.h:310:113: instantiated from 'typename seqan::GetValue > >::Type seqan::getValue(TFile&, seqan::Iter >&) [with TBlastHit = seqan::BlastHit, seqan::FullInfo>, seqan::StreamReport > >, TFile = std::basic_fstream, typename seqan::GetValue > >::Type = seqan::BlastHsp, seqan::FullInfo>]' /«PKGBUILDDIR»/demos/blast_report.cpp:55:42: instantiated from 'void read_blast_report(TFile&) [with TFile = std::basic_fstream]' /«PKGBUILDDIR»/demos/blast_report.cpp:79:24: instantiated from here /«PKGBUILDDIR»/seqan/blast/blast_hsp.h:314:15: warning: variable 'pos' set but not used [-Wunused-but-set-variable] Linking CXX executable blast_report cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/blast_report.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/blast_report.dir/«PKGBUILDDIR»/demos/blast_report.cpp.o -o blast_report -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 6 [ 20%] Built target blast_report /usr/bin/make -f demos/CMakeFiles/file_format.dir/build.make demos/CMakeFiles/file_format.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/file_format.dir/DependInfo.cmake --color= Scanning dependencies of target file_format make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/file_format.dir/build.make demos/CMakeFiles/file_format.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 8 [ 21%] Building CXX object demos/CMakeFiles/file_format.dir/«PKGBUILDDIR»/demos/file_format.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/file_format.dir/«PKGBUILDDIR»/demos/file_format.cpp.o -c /«PKGBUILDDIR»/demos/file_format.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/file_format.cpp:6: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable file_format cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/file_format.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/file_format.dir/«PKGBUILDDIR»/demos/file_format.cpp.o -o file_format -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 8 [ 21%] Built target file_format /usr/bin/make -f demos/CMakeFiles/file_readwrite.dir/build.make demos/CMakeFiles/file_readwrite.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/file_readwrite.dir/DependInfo.cmake --color= Scanning dependencies of target file_readwrite make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/file_readwrite.dir/build.make demos/CMakeFiles/file_readwrite.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 21%] Building CXX object demos/CMakeFiles/file_readwrite.dir/«PKGBUILDDIR»/demos/file_readwrite.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/file_readwrite.dir/«PKGBUILDDIR»/demos/file_readwrite.cpp.o -c /«PKGBUILDDIR»/demos/file_readwrite.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/file_readwrite.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable file_readwrite cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/file_readwrite.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/file_readwrite.dir/«PKGBUILDDIR»/demos/file_readwrite.cpp.o -o file_readwrite -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 21%] Built target file_readwrite /usr/bin/make -f demos/CMakeFiles/file_speed.dir/build.make demos/CMakeFiles/file_speed.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/file_speed.dir/DependInfo.cmake --color= Scanning dependencies of target file_speed make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/file_speed.dir/build.make demos/CMakeFiles/file_speed.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 9 [ 22%] Building CXX object demos/CMakeFiles/file_speed.dir/«PKGBUILDDIR»/demos/file_speed.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/file_speed.dir/«PKGBUILDDIR»/demos/file_speed.cpp.o -c /«PKGBUILDDIR»/demos/file_speed.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/file_speed.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable file_speed cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/file_speed.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/file_speed.dir/«PKGBUILDDIR»/demos/file_speed.cpp.o -o file_speed -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 9 [ 22%] Built target file_speed /usr/bin/make -f demos/CMakeFiles/find_approx.dir/build.make demos/CMakeFiles/find_approx.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/find_approx.dir/DependInfo.cmake --color= Scanning dependencies of target find_approx make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/find_approx.dir/build.make demos/CMakeFiles/find_approx.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 10 [ 23%] Building CXX object demos/CMakeFiles/find_approx.dir/«PKGBUILDDIR»/demos/find_approx.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/find_approx.dir/«PKGBUILDDIR»/demos/find_approx.cpp.o -c /«PKGBUILDDIR»/demos/find_approx.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/demos/find_approx.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable find_approx cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/find_approx.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/find_approx.dir/«PKGBUILDDIR»/demos/find_approx.cpp.o -o find_approx -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 10 [ 23%] Built target find_approx /usr/bin/make -f demos/CMakeFiles/find_exact.dir/build.make demos/CMakeFiles/find_exact.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/find_exact.dir/DependInfo.cmake --color= Scanning dependencies of target find_exact make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/find_exact.dir/build.make demos/CMakeFiles/find_exact.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 11 [ 24%] Building CXX object demos/CMakeFiles/find_exact.dir/«PKGBUILDDIR»/demos/find_exact.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/find_exact.dir/«PKGBUILDDIR»/demos/find_exact.cpp.o -c /«PKGBUILDDIR»/demos/find_exact.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/demos/find_exact.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable find_exact cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/find_exact.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/find_exact.dir/«PKGBUILDDIR»/demos/find_exact.cpp.o -o find_exact -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 11 [ 24%] Built target find_exact /usr/bin/make -f demos/CMakeFiles/find_motif.dir/build.make demos/CMakeFiles/find_motif.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/find_motif.dir/DependInfo.cmake --color= Scanning dependencies of target find_motif make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/find_motif.dir/build.make demos/CMakeFiles/find_motif.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 12 [ 25%] Building CXX object demos/CMakeFiles/find_motif.dir/«PKGBUILDDIR»/demos/find_motif.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/find_motif.dir/«PKGBUILDDIR»/demos/find_motif.cpp.o -c /«PKGBUILDDIR»/demos/find_motif.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find_motif.h:45, from /«PKGBUILDDIR»/demos/find_motif.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/find_motif.h:70:0, from /«PKGBUILDDIR»/demos/find_motif.cpp:3: /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h: In function 'int seqan::_refinementStep(TString&, const seqan::String&, seqan::String&, const TType&, const TType&, const bool&, const seqan::Oops&) [with TString = seqan::String, seqan::Alloc >, TType = unsigned int]': /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:479:19: instantiated from 'void seqan::findMotif(seqan::MotifFinder >&, TStrings&, TModel) [with TSeqType = seqan::SimpleType, TStrings = seqan::String, seqan::Alloc > >, TModel = seqan::Oops]' /«PKGBUILDDIR»/demos/find_motif.cpp:57:40: instantiated from here /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:615:9: warning: variable 'likelihood_score' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h: In function 'int seqan::_refinementStep(TString&, const seqan::String&, seqan::String&, const TType&, const TType&, const bool&, const seqan::Omops&) [with TString = seqan::String, seqan::Alloc >, TType = unsigned int]': /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:479:19: instantiated from 'void seqan::findMotif(seqan::MotifFinder >&, TStrings&, TModel) [with TSeqType = seqan::SimpleType, TStrings = seqan::String, seqan::Alloc > >, TModel = seqan::Omops]' /«PKGBUILDDIR»/demos/find_motif.cpp:62:47: instantiated from here /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:696:9: warning: variable 'likelihood_score' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h: In function 'int seqan::_refinementStep(TString&, const seqan::String&, seqan::String&, const TType&, const TType&, const bool&, const seqan::Zoops&) [with TString = seqan::String, seqan::Alloc >, TType = unsigned int]': /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:479:19: instantiated from 'void seqan::findMotif(seqan::MotifFinder >&, TStrings&, TModel) [with TSeqType = seqan::SimpleType, TStrings = seqan::String, seqan::Alloc > >, TModel = seqan::Zoops]' /«PKGBUILDDIR»/demos/find_motif.cpp:67:47: instantiated from here /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:777:9: warning: variable 'likelihood_score' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:790:36: warning: variable 'seq_nr' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h: In function 'int seqan::_refinementStep(TString&, const seqan::String&, seqan::String&, const TType&, const TType&, const bool&, const seqan::Tcm&) [with TString = seqan::String, seqan::Alloc >, TType = unsigned int]': /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:479:19: instantiated from 'void seqan::findMotif(seqan::MotifFinder >&, TStrings&, TModel) [with TSeqType = seqan::SimpleType, TStrings = seqan::String, seqan::Alloc > >, TModel = seqan::Tcm]' /«PKGBUILDDIR»/demos/find_motif.cpp:72:43: instantiated from here /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:892:9: warning: variable 'likelihood_score' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:902:36: warning: variable 'seq_nr' set but not used [-Wunused-but-set-variable] Linking CXX executable find_motif cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/find_motif.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/find_motif.dir/«PKGBUILDDIR»/demos/find_motif.cpp.o -o find_motif -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 12 [ 25%] Built target find_motif /usr/bin/make -f demos/CMakeFiles/find_wild.dir/build.make demos/CMakeFiles/find_wild.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/find_wild.dir/DependInfo.cmake --color= Scanning dependencies of target find_wild make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/find_wild.dir/build.make demos/CMakeFiles/find_wild.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 25%] Building CXX object demos/CMakeFiles/find_wild.dir/«PKGBUILDDIR»/demos/find_wild.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/find_wild.dir/«PKGBUILDDIR»/demos/find_wild.cpp.o -c /«PKGBUILDDIR»/demos/find_wild.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/demos/find_wild.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable find_wild cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/find_wild.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/find_wild.dir/«PKGBUILDDIR»/demos/find_wild.cpp.o -o find_wild -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 25%] Built target find_wild /usr/bin/make -f demos/CMakeFiles/gff2gtf.dir/build.make demos/CMakeFiles/gff2gtf.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/gff2gtf.dir/DependInfo.cmake --color= Scanning dependencies of target gff2gtf make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/gff2gtf.dir/build.make demos/CMakeFiles/gff2gtf.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 13 [ 26%] Building CXX object demos/CMakeFiles/gff2gtf.dir/«PKGBUILDDIR»/demos/gff2gtf.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/gff2gtf.dir/«PKGBUILDDIR»/demos/gff2gtf.cpp.o -c /«PKGBUILDDIR»/demos/gff2gtf.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/store.h:36, from /«PKGBUILDDIR»/demos/gff2gtf.cpp:6: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable gff2gtf cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/gff2gtf.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/gff2gtf.dir/«PKGBUILDDIR»/demos/gff2gtf.cpp.o -o gff2gtf -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 13 [ 26%] Built target gff2gtf /usr/bin/make -f demos/CMakeFiles/graph_algo_bfs.dir/build.make demos/CMakeFiles/graph_algo_bfs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_bfs.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_bfs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_bfs.dir/build.make demos/CMakeFiles/graph_algo_bfs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 14 [ 27%] Building CXX object demos/CMakeFiles/graph_algo_bfs.dir/«PKGBUILDDIR»/demos/graph_algo_bfs.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_bfs.dir/«PKGBUILDDIR»/demos/graph_algo_bfs.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_bfs.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_bfs.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_bfs cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_bfs.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_bfs.dir/«PKGBUILDDIR»/demos/graph_algo_bfs.cpp.o -o graph_algo_bfs -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 14 [ 27%] Built target graph_algo_bfs /usr/bin/make -f demos/CMakeFiles/graph_algo_dfs.dir/build.make demos/CMakeFiles/graph_algo_dfs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_dfs.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_dfs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_dfs.dir/build.make demos/CMakeFiles/graph_algo_dfs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 15 [ 28%] Building CXX object demos/CMakeFiles/graph_algo_dfs.dir/«PKGBUILDDIR»/demos/graph_algo_dfs.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_dfs.dir/«PKGBUILDDIR»/demos/graph_algo_dfs.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_dfs.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_dfs.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_dfs cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_dfs.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_dfs.dir/«PKGBUILDDIR»/demos/graph_algo_dfs.cpp.o -o graph_algo_dfs -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 15 [ 28%] Built target graph_algo_dfs /usr/bin/make -f demos/CMakeFiles/graph_algo_flow_fordfulkerson.dir/build.make demos/CMakeFiles/graph_algo_flow_fordfulkerson.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_flow_fordfulkerson.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_flow_fordfulkerson make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_flow_fordfulkerson.dir/build.make demos/CMakeFiles/graph_algo_flow_fordfulkerson.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 16 [ 29%] Building CXX object demos/CMakeFiles/graph_algo_flow_fordfulkerson.dir/«PKGBUILDDIR»/demos/graph_algo_flow_fordfulkerson.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_flow_fordfulkerson.dir/«PKGBUILDDIR»/demos/graph_algo_flow_fordfulkerson.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_flow_fordfulkerson.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_flow_fordfulkerson.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_flow_fordfulkerson cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_flow_fordfulkerson.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_flow_fordfulkerson.dir/«PKGBUILDDIR»/demos/graph_algo_flow_fordfulkerson.cpp.o -o graph_algo_flow_fordfulkerson -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 16 [ 29%] Built target graph_algo_flow_fordfulkerson /usr/bin/make -f demos/CMakeFiles/graph_algo_his.dir/build.make demos/CMakeFiles/graph_algo_his.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_his.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_his make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_his.dir/build.make demos/CMakeFiles/graph_algo_his.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 29%] Building CXX object demos/CMakeFiles/graph_algo_his.dir/«PKGBUILDDIR»/demos/graph_algo_his.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_his.dir/«PKGBUILDDIR»/demos/graph_algo_his.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_his.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_his.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_his cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_his.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_his.dir/«PKGBUILDDIR»/demos/graph_algo_his.cpp.o -o graph_algo_his -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 29%] Built target graph_algo_his /usr/bin/make -f demos/CMakeFiles/graph_algo_lcs.dir/build.make demos/CMakeFiles/graph_algo_lcs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_lcs.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_lcs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_lcs.dir/build.make demos/CMakeFiles/graph_algo_lcs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 17 [ 30%] Building CXX object demos/CMakeFiles/graph_algo_lcs.dir/«PKGBUILDDIR»/demos/graph_algo_lcs.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_lcs.dir/«PKGBUILDDIR»/demos/graph_algo_lcs.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_lcs.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_lcs.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_lcs cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_lcs.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_lcs.dir/«PKGBUILDDIR»/demos/graph_algo_lcs.cpp.o -o graph_algo_lcs -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 17 [ 30%] Built target graph_algo_lcs /usr/bin/make -f demos/CMakeFiles/graph_algo_lis.dir/build.make demos/CMakeFiles/graph_algo_lis.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_lis.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_lis make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_lis.dir/build.make demos/CMakeFiles/graph_algo_lis.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 18 [ 31%] Building CXX object demos/CMakeFiles/graph_algo_lis.dir/«PKGBUILDDIR»/demos/graph_algo_lis.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_lis.dir/«PKGBUILDDIR»/demos/graph_algo_lis.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_lis.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_lis.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_lis cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_lis.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_lis.dir/«PKGBUILDDIR»/demos/graph_algo_lis.cpp.o -o graph_algo_lis -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 18 [ 31%] Built target graph_algo_lis /usr/bin/make -f demos/CMakeFiles/graph_algo_path_allpairs.dir/build.make demos/CMakeFiles/graph_algo_path_allpairs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_path_allpairs.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_path_allpairs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_path_allpairs.dir/build.make demos/CMakeFiles/graph_algo_path_allpairs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 19 [ 32%] Building CXX object demos/CMakeFiles/graph_algo_path_allpairs.dir/«PKGBUILDDIR»/demos/graph_algo_path_allpairs.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_path_allpairs.dir/«PKGBUILDDIR»/demos/graph_algo_path_allpairs.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_path_allpairs.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_path_allpairs.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_path_allpairs cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_path_allpairs.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_path_allpairs.dir/«PKGBUILDDIR»/demos/graph_algo_path_allpairs.cpp.o -o graph_algo_path_allpairs -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 19 [ 32%] Built target graph_algo_path_allpairs /usr/bin/make -f demos/CMakeFiles/graph_algo_path_bellmanford.dir/build.make demos/CMakeFiles/graph_algo_path_bellmanford.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_path_bellmanford.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_path_bellmanford make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_path_bellmanford.dir/build.make demos/CMakeFiles/graph_algo_path_bellmanford.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 20 [ 33%] Building CXX object demos/CMakeFiles/graph_algo_path_bellmanford.dir/«PKGBUILDDIR»/demos/graph_algo_path_bellmanford.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_path_bellmanford.dir/«PKGBUILDDIR»/demos/graph_algo_path_bellmanford.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_path_bellmanford.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_path_bellmanford.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_path_bellmanford cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_path_bellmanford.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_path_bellmanford.dir/«PKGBUILDDIR»/demos/graph_algo_path_bellmanford.cpp.o -o graph_algo_path_bellmanford -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 20 [ 33%] Built target graph_algo_path_bellmanford /usr/bin/make -f demos/CMakeFiles/graph_algo_path_dag.dir/build.make demos/CMakeFiles/graph_algo_path_dag.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_path_dag.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_path_dag make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_path_dag.dir/build.make demos/CMakeFiles/graph_algo_path_dag.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 33%] Building CXX object demos/CMakeFiles/graph_algo_path_dag.dir/«PKGBUILDDIR»/demos/graph_algo_path_dag.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_path_dag.dir/«PKGBUILDDIR»/demos/graph_algo_path_dag.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_path_dag.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_path_dag.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_path_dag cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_path_dag.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_path_dag.dir/«PKGBUILDDIR»/demos/graph_algo_path_dag.cpp.o -o graph_algo_path_dag -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 33%] Built target graph_algo_path_dag /usr/bin/make -f demos/CMakeFiles/graph_algo_path_dijkstra.dir/build.make demos/CMakeFiles/graph_algo_path_dijkstra.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_path_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_path_dijkstra make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_path_dijkstra.dir/build.make demos/CMakeFiles/graph_algo_path_dijkstra.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 21 [ 34%] Building CXX object demos/CMakeFiles/graph_algo_path_dijkstra.dir/«PKGBUILDDIR»/demos/graph_algo_path_dijkstra.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_path_dijkstra.dir/«PKGBUILDDIR»/demos/graph_algo_path_dijkstra.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_path_dijkstra.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_path_dijkstra.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_path_dijkstra cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_path_dijkstra.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_path_dijkstra.dir/«PKGBUILDDIR»/demos/graph_algo_path_dijkstra.cpp.o -o graph_algo_path_dijkstra -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 21 [ 34%] Built target graph_algo_path_dijkstra /usr/bin/make -f demos/CMakeFiles/graph_algo_path_floydwarshall.dir/build.make demos/CMakeFiles/graph_algo_path_floydwarshall.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_path_floydwarshall.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_path_floydwarshall make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_path_floydwarshall.dir/build.make demos/CMakeFiles/graph_algo_path_floydwarshall.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 22 [ 35%] Building CXX object demos/CMakeFiles/graph_algo_path_floydwarshall.dir/«PKGBUILDDIR»/demos/graph_algo_path_floydwarshall.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_path_floydwarshall.dir/«PKGBUILDDIR»/demos/graph_algo_path_floydwarshall.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_path_floydwarshall.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_path_floydwarshall.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_path_floydwarshall cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_path_floydwarshall.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_path_floydwarshall.dir/«PKGBUILDDIR»/demos/graph_algo_path_floydwarshall.cpp.o -o graph_algo_path_floydwarshall -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 22 [ 35%] Built target graph_algo_path_floydwarshall /usr/bin/make -f demos/CMakeFiles/graph_algo_path_transitive.dir/build.make demos/CMakeFiles/graph_algo_path_transitive.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_path_transitive.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_path_transitive make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_path_transitive.dir/build.make demos/CMakeFiles/graph_algo_path_transitive.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 23 [ 36%] Building CXX object demos/CMakeFiles/graph_algo_path_transitive.dir/«PKGBUILDDIR»/demos/graph_algo_path_transitive.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_path_transitive.dir/«PKGBUILDDIR»/demos/graph_algo_path_transitive.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_path_transitive.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_path_transitive.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_path_transitive cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_path_transitive.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_path_transitive.dir/«PKGBUILDDIR»/demos/graph_algo_path_transitive.cpp.o -o graph_algo_path_transitive -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 23 [ 36%] Built target graph_algo_path_transitive /usr/bin/make -f demos/CMakeFiles/graph_algo_scc.dir/build.make demos/CMakeFiles/graph_algo_scc.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_scc.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_scc make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_scc.dir/build.make demos/CMakeFiles/graph_algo_scc.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 24 [ 37%] Building CXX object demos/CMakeFiles/graph_algo_scc.dir/«PKGBUILDDIR»/demos/graph_algo_scc.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_scc.dir/«PKGBUILDDIR»/demos/graph_algo_scc.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_scc.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_scc.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_scc cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_scc.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_scc.dir/«PKGBUILDDIR»/demos/graph_algo_scc.cpp.o -o graph_algo_scc -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 24 [ 37%] Built target graph_algo_scc /usr/bin/make -f demos/CMakeFiles/graph_algo_topsort.dir/build.make demos/CMakeFiles/graph_algo_topsort.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_topsort.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_topsort make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_topsort.dir/build.make demos/CMakeFiles/graph_algo_topsort.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 25 [ 38%] Building CXX object demos/CMakeFiles/graph_algo_topsort.dir/«PKGBUILDDIR»/demos/graph_algo_topsort.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_topsort.dir/«PKGBUILDDIR»/demos/graph_algo_topsort.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_topsort.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_topsort.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_topsort cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_topsort.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_topsort.dir/«PKGBUILDDIR»/demos/graph_algo_topsort.cpp.o -o graph_algo_topsort -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 25 [ 38%] Built target graph_algo_topsort /usr/bin/make -f demos/CMakeFiles/graph_algo_tree_kruskal.dir/build.make demos/CMakeFiles/graph_algo_tree_kruskal.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_tree_kruskal.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_tree_kruskal make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_tree_kruskal.dir/build.make demos/CMakeFiles/graph_algo_tree_kruskal.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 38%] Building CXX object demos/CMakeFiles/graph_algo_tree_kruskal.dir/«PKGBUILDDIR»/demos/graph_algo_tree_kruskal.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_tree_kruskal.dir/«PKGBUILDDIR»/demos/graph_algo_tree_kruskal.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_tree_kruskal.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_tree_kruskal.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_tree_kruskal cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_tree_kruskal.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_tree_kruskal.dir/«PKGBUILDDIR»/demos/graph_algo_tree_kruskal.cpp.o -o graph_algo_tree_kruskal -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 38%] Built target graph_algo_tree_kruskal /usr/bin/make -f demos/CMakeFiles/graph_algo_tree_prim.dir/build.make demos/CMakeFiles/graph_algo_tree_prim.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_algo_tree_prim.dir/DependInfo.cmake --color= Scanning dependencies of target graph_algo_tree_prim make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_algo_tree_prim.dir/build.make demos/CMakeFiles/graph_algo_tree_prim.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 26 [ 39%] Building CXX object demos/CMakeFiles/graph_algo_tree_prim.dir/«PKGBUILDDIR»/demos/graph_algo_tree_prim.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_algo_tree_prim.dir/«PKGBUILDDIR»/demos/graph_algo_tree_prim.cpp.o -c /«PKGBUILDDIR»/demos/graph_algo_tree_prim.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_algo_tree_prim.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_algo_tree_prim cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_algo_tree_prim.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_algo_tree_prim.dir/«PKGBUILDDIR»/demos/graph_algo_tree_prim.cpp.o -o graph_algo_tree_prim -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 26 [ 39%] Built target graph_algo_tree_prim /usr/bin/make -f demos/CMakeFiles/graph_hmm.dir/build.make demos/CMakeFiles/graph_hmm.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_hmm.dir/DependInfo.cmake --color= Scanning dependencies of target graph_hmm make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_hmm.dir/build.make demos/CMakeFiles/graph_hmm.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 27 [ 40%] Building CXX object demos/CMakeFiles/graph_hmm.dir/«PKGBUILDDIR»/demos/graph_hmm.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_hmm.dir/«PKGBUILDDIR»/demos/graph_hmm.cpp.o -c /«PKGBUILDDIR»/demos/graph_hmm.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_hmm.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_hmm cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_hmm.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_hmm.dir/«PKGBUILDDIR»/demos/graph_hmm.cpp.o -o graph_hmm -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 27 [ 40%] Built target graph_hmm /usr/bin/make -f demos/CMakeFiles/graph_hmm_silent.dir/build.make demos/CMakeFiles/graph_hmm_silent.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/graph_hmm_silent.dir/DependInfo.cmake --color= Scanning dependencies of target graph_hmm_silent make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/graph_hmm_silent.dir/build.make demos/CMakeFiles/graph_hmm_silent.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 28 [ 41%] Building CXX object demos/CMakeFiles/graph_hmm_silent.dir/«PKGBUILDDIR»/demos/graph_hmm_silent.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/graph_hmm_silent.dir/«PKGBUILDDIR»/demos/graph_hmm_silent.cpp.o -c /«PKGBUILDDIR»/demos/graph_hmm_silent.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/graph_hmm_silent.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable graph_hmm_silent cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph_hmm_silent.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/graph_hmm_silent.dir/«PKGBUILDDIR»/demos/graph_hmm_silent.cpp.o -o graph_hmm_silent -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 28 [ 41%] Built target graph_hmm_silent /usr/bin/make -f demos/CMakeFiles/index_find.dir/build.make demos/CMakeFiles/index_find.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_find.dir/DependInfo.cmake --color= Scanning dependencies of target index_find make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_find.dir/build.make demos/CMakeFiles/index_find.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 29 [ 42%] Building CXX object demos/CMakeFiles/index_find.dir/«PKGBUILDDIR»/demos/index_find.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_find.dir/«PKGBUILDDIR»/demos/index_find.cpp.o -c /«PKGBUILDDIR»/demos/index_find.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_find.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_find cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_find.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_find.dir/«PKGBUILDDIR»/demos/index_find.cpp.o -o index_find -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 29 [ 42%] Built target index_find /usr/bin/make -f demos/CMakeFiles/index_find_stringset.dir/build.make demos/CMakeFiles/index_find_stringset.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_find_stringset.dir/DependInfo.cmake --color= Scanning dependencies of target index_find_stringset make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_find_stringset.dir/build.make demos/CMakeFiles/index_find_stringset.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 42%] Building CXX object demos/CMakeFiles/index_find_stringset.dir/«PKGBUILDDIR»/demos/index_find_stringset.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_find_stringset.dir/«PKGBUILDDIR»/demos/index_find_stringset.cpp.o -c /«PKGBUILDDIR»/demos/index_find_stringset.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_find_stringset.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_find_stringset cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_find_stringset.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_find_stringset.dir/«PKGBUILDDIR»/demos/index_find_stringset.cpp.o -o index_find_stringset -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 42%] Built target index_find_stringset /usr/bin/make -f demos/CMakeFiles/index_maxrepeats.dir/build.make demos/CMakeFiles/index_maxrepeats.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_maxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target index_maxrepeats make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_maxrepeats.dir/build.make demos/CMakeFiles/index_maxrepeats.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 30 [ 43%] Building CXX object demos/CMakeFiles/index_maxrepeats.dir/«PKGBUILDDIR»/demos/index_maxrepeats.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_maxrepeats.dir/«PKGBUILDDIR»/demos/index_maxrepeats.cpp.o -c /«PKGBUILDDIR»/demos/index_maxrepeats.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_maxrepeats.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_maxrepeats cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_maxrepeats.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_maxrepeats.dir/«PKGBUILDDIR»/demos/index_maxrepeats.cpp.o -o index_maxrepeats -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 30 [ 43%] Built target index_maxrepeats /usr/bin/make -f demos/CMakeFiles/index_mummy.dir/build.make demos/CMakeFiles/index_mummy.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_mummy.dir/DependInfo.cmake --color= Scanning dependencies of target index_mummy make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_mummy.dir/build.make demos/CMakeFiles/index_mummy.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 31 [ 44%] Building CXX object demos/CMakeFiles/index_mummy.dir/«PKGBUILDDIR»/demos/index_mummy.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_mummy.dir/«PKGBUILDDIR»/demos/index_mummy.cpp.o -c /«PKGBUILDDIR»/demos/index_mummy.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_mummy.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_mummy cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_mummy.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_mummy.dir/«PKGBUILDDIR»/demos/index_mummy.cpp.o -o index_mummy -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 31 [ 44%] Built target index_mummy /usr/bin/make -f demos/CMakeFiles/index_mums.dir/build.make demos/CMakeFiles/index_mums.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_mums.dir/DependInfo.cmake --color= Scanning dependencies of target index_mums make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_mums.dir/build.make demos/CMakeFiles/index_mums.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 32 [ 45%] Building CXX object demos/CMakeFiles/index_mums.dir/«PKGBUILDDIR»/demos/index_mums.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_mums.dir/«PKGBUILDDIR»/demos/index_mums.cpp.o -c /«PKGBUILDDIR»/demos/index_mums.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_mums.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_mums cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_mums.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_mums.dir/«PKGBUILDDIR»/demos/index_mums.cpp.o -o index_mums -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 32 [ 45%] Built target index_mums /usr/bin/make -f demos/CMakeFiles/index_node_predicate.dir/build.make demos/CMakeFiles/index_node_predicate.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_node_predicate.dir/DependInfo.cmake --color= Scanning dependencies of target index_node_predicate make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_node_predicate.dir/build.make demos/CMakeFiles/index_node_predicate.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 33 [ 46%] Building CXX object demos/CMakeFiles/index_node_predicate.dir/«PKGBUILDDIR»/demos/index_node_predicate.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_node_predicate.dir/«PKGBUILDDIR»/demos/index_node_predicate.cpp.o -c /«PKGBUILDDIR»/demos/index_node_predicate.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_node_predicate.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_node_predicate cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_node_predicate.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_node_predicate.dir/«PKGBUILDDIR»/demos/index_node_predicate.cpp.o -o index_node_predicate -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 33 [ 46%] Built target index_node_predicate /usr/bin/make -f demos/CMakeFiles/index_qgram_counts.dir/build.make demos/CMakeFiles/index_qgram_counts.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_qgram_counts.dir/DependInfo.cmake --color= Scanning dependencies of target index_qgram_counts make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_qgram_counts.dir/build.make demos/CMakeFiles/index_qgram_counts.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 46%] Building CXX object demos/CMakeFiles/index_qgram_counts.dir/«PKGBUILDDIR»/demos/index_qgram_counts.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_qgram_counts.dir/«PKGBUILDDIR»/demos/index_qgram_counts.cpp.o -c /«PKGBUILDDIR»/demos/index_qgram_counts.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_qgram_counts.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_qgram_counts cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_qgram_counts.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_qgram_counts.dir/«PKGBUILDDIR»/demos/index_qgram_counts.cpp.o -o index_qgram_counts -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 46%] Built target index_qgram_counts /usr/bin/make -f demos/CMakeFiles/index_sufarray.dir/build.make demos/CMakeFiles/index_sufarray.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_sufarray.dir/DependInfo.cmake --color= Scanning dependencies of target index_sufarray make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_sufarray.dir/build.make demos/CMakeFiles/index_sufarray.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 34 [ 47%] Building CXX object demos/CMakeFiles/index_sufarray.dir/«PKGBUILDDIR»/demos/index_sufarray.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_sufarray.dir/«PKGBUILDDIR»/demos/index_sufarray.cpp.o -c /«PKGBUILDDIR»/demos/index_sufarray.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_sufarray.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_sufarray cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_sufarray.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_sufarray.dir/«PKGBUILDDIR»/demos/index_sufarray.cpp.o -o index_sufarray -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 34 [ 47%] Built target index_sufarray /usr/bin/make -f demos/CMakeFiles/index_supermaxrepeats.dir/build.make demos/CMakeFiles/index_supermaxrepeats.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/index_supermaxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target index_supermaxrepeats make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/index_supermaxrepeats.dir/build.make demos/CMakeFiles/index_supermaxrepeats.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 35 [ 48%] Building CXX object demos/CMakeFiles/index_supermaxrepeats.dir/«PKGBUILDDIR»/demos/index_supermaxrepeats.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/index_supermaxrepeats.dir/«PKGBUILDDIR»/demos/index_supermaxrepeats.cpp.o -c /«PKGBUILDDIR»/demos/index_supermaxrepeats.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/index_supermaxrepeats.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable index_supermaxrepeats cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/index_supermaxrepeats.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/index_supermaxrepeats.dir/«PKGBUILDDIR»/demos/index_supermaxrepeats.cpp.o -o index_supermaxrepeats -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 35 [ 48%] Built target index_supermaxrepeats /usr/bin/make -f demos/CMakeFiles/interval_tree.dir/build.make demos/CMakeFiles/interval_tree.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/interval_tree.dir/DependInfo.cmake --color= Scanning dependencies of target interval_tree make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/interval_tree.dir/build.make demos/CMakeFiles/interval_tree.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 37 [ 49%] Building CXX object demos/CMakeFiles/interval_tree.dir/«PKGBUILDDIR»/demos/interval_tree.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/interval_tree.dir/«PKGBUILDDIR»/demos/interval_tree.cpp.o -c /«PKGBUILDDIR»/demos/interval_tree.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/score.h:40, from /«PKGBUILDDIR»/seqan/refinement.h:40, from /«PKGBUILDDIR»/demos/interval_tree.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable interval_tree cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/interval_tree.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/interval_tree.dir/«PKGBUILDDIR»/demos/interval_tree.cpp.o -o interval_tree -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 37 [ 49%] Built target interval_tree /usr/bin/make -f demos/CMakeFiles/iterator.dir/build.make demos/CMakeFiles/iterator.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/iterator.dir/DependInfo.cmake --color= Scanning dependencies of target iterator make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/iterator.dir/build.make demos/CMakeFiles/iterator.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 49%] Building CXX object demos/CMakeFiles/iterator.dir/«PKGBUILDDIR»/demos/iterator.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/iterator.dir/«PKGBUILDDIR»/demos/iterator.cpp.o -c /«PKGBUILDDIR»/demos/iterator.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/iterator.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable iterator cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/iterator.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/iterator.dir/«PKGBUILDDIR»/demos/iterator.cpp.o -o iterator -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 49%] Built target iterator /usr/bin/make -f demos/CMakeFiles/lagan.dir/build.make demos/CMakeFiles/lagan.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/lagan.dir/DependInfo.cmake --color= Scanning dependencies of target lagan make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/lagan.dir/build.make demos/CMakeFiles/lagan.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 38 [ 50%] Building CXX object demos/CMakeFiles/lagan.dir/«PKGBUILDDIR»/demos/lagan.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/lagan.dir/«PKGBUILDDIR»/demos/lagan.cpp.o -c /«PKGBUILDDIR»/demos/lagan.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/seeds.h:36, from /«PKGBUILDDIR»/demos/lagan.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 /«PKGBUILDDIR»/seqan/index/find_index.h: In function 'void laganChaining(std::list&, const TSegment&, const TSegment&, TSize) [with TSeed = seqan::Seed >, TSegment = seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, TSize = int]': /«PKGBUILDDIR»/seqan/index/find_index.h:298:4: warning: '*((void*)& finder +16)' may be used uninitialized in this function [-Wuninitialized] /«PKGBUILDDIR»/demos/lagan.cpp:36:10: note: '*((void*)& finder +16)' was declared here Linking CXX executable lagan cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/lagan.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/lagan.dir/«PKGBUILDDIR»/demos/lagan.cpp.o -o lagan -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 38 [ 50%] Built target lagan /usr/bin/make -f demos/CMakeFiles/modifier_modreverse.dir/build.make demos/CMakeFiles/modifier_modreverse.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/modifier_modreverse.dir/DependInfo.cmake --color= Scanning dependencies of target modifier_modreverse make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/modifier_modreverse.dir/build.make demos/CMakeFiles/modifier_modreverse.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 41 [ 51%] Building CXX object demos/CMakeFiles/modifier_modreverse.dir/«PKGBUILDDIR»/demos/modifier_modreverse.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/modifier_modreverse.dir/«PKGBUILDDIR»/demos/modifier_modreverse.cpp.o -c /«PKGBUILDDIR»/demos/modifier_modreverse.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/file.h:47, from /«PKGBUILDDIR»/demos/modifier_modreverse.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable modifier_modreverse cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/modifier_modreverse.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/modifier_modreverse.dir/«PKGBUILDDIR»/demos/modifier_modreverse.cpp.o -o modifier_modreverse -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 41 [ 51%] Built target modifier_modreverse /usr/bin/make -f demos/CMakeFiles/modifier_modview.dir/build.make demos/CMakeFiles/modifier_modview.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/modifier_modview.dir/DependInfo.cmake --color= Scanning dependencies of target modifier_modview make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/modifier_modview.dir/build.make demos/CMakeFiles/modifier_modview.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 51%] Building CXX object demos/CMakeFiles/modifier_modview.dir/«PKGBUILDDIR»/demos/modifier_modview.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/modifier_modview.dir/«PKGBUILDDIR»/demos/modifier_modview.cpp.o -c /«PKGBUILDDIR»/demos/modifier_modview.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/file.h:47, from /«PKGBUILDDIR»/demos/modifier_modview.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable modifier_modview cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/modifier_modview.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/modifier_modview.dir/«PKGBUILDDIR»/demos/modifier_modview.cpp.o -o modifier_modview -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 51%] Built target modifier_modview /usr/bin/make -f demos/CMakeFiles/modifier_nested.dir/build.make demos/CMakeFiles/modifier_nested.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/modifier_nested.dir/DependInfo.cmake --color= Scanning dependencies of target modifier_nested make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/modifier_nested.dir/build.make demos/CMakeFiles/modifier_nested.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 42 [ 52%] Building CXX object demos/CMakeFiles/modifier_nested.dir/«PKGBUILDDIR»/demos/modifier_nested.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/modifier_nested.dir/«PKGBUILDDIR»/demos/modifier_nested.cpp.o -c /«PKGBUILDDIR»/demos/modifier_nested.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/file.h:47, from /«PKGBUILDDIR»/demos/modifier_nested.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable modifier_nested cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/modifier_nested.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/modifier_nested.dir/«PKGBUILDDIR»/demos/modifier_nested.cpp.o -o modifier_nested -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 42 [ 52%] Built target modifier_nested /usr/bin/make -f demos/CMakeFiles/rooted_iterator.dir/build.make demos/CMakeFiles/rooted_iterator.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/rooted_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target rooted_iterator make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/rooted_iterator.dir/build.make demos/CMakeFiles/rooted_iterator.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 48 [ 53%] Building CXX object demos/CMakeFiles/rooted_iterator.dir/«PKGBUILDDIR»/demos/rooted_iterator.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/rooted_iterator.dir/«PKGBUILDDIR»/demos/rooted_iterator.cpp.o -c /«PKGBUILDDIR»/demos/rooted_iterator.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/rooted_iterator.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable rooted_iterator cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/rooted_iterator.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/rooted_iterator.dir/«PKGBUILDDIR»/demos/rooted_iterator.cpp.o -o rooted_iterator -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 48 [ 53%] Built target rooted_iterator /usr/bin/make -f demos/CMakeFiles/sam2svg.dir/build.make demos/CMakeFiles/sam2svg.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/sam2svg.dir/DependInfo.cmake --color= Scanning dependencies of target sam2svg make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/sam2svg.dir/build.make demos/CMakeFiles/sam2svg.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 50 [ 54%] Building CXX object demos/CMakeFiles/sam2svg.dir/«PKGBUILDDIR»/demos/sam2svg.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/sam2svg.dir/«PKGBUILDDIR»/demos/sam2svg.cpp.o -c /«PKGBUILDDIR»/demos/sam2svg.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/store.h:36, from /«PKGBUILDDIR»/demos/sam2svg.cpp:6: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable sam2svg cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2svg.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/sam2svg.dir/«PKGBUILDDIR»/demos/sam2svg.cpp.o -o sam2svg -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 50 [ 54%] Built target sam2svg /usr/bin/make -f demos/CMakeFiles/seeds.dir/build.make demos/CMakeFiles/seeds.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/seeds.dir/DependInfo.cmake --color= Scanning dependencies of target seeds make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/seeds.dir/build.make demos/CMakeFiles/seeds.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 54%] Building CXX object demos/CMakeFiles/seeds.dir/«PKGBUILDDIR»/demos/seeds.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/seeds.dir/«PKGBUILDDIR»/demos/seeds.cpp.o -c /«PKGBUILDDIR»/demos/seeds.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/seeds.h:36, from /«PKGBUILDDIR»/demos/seeds.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/chaining/range_max_tree.h:40:0, from /«PKGBUILDDIR»/seqan/chaining.h:55, from /«PKGBUILDDIR»/seqan/seeds.h:61, from /«PKGBUILDDIR»/demos/seeds.cpp:3: /«PKGBUILDDIR»/seqan/chaining/chain_point.h: In function 'void seqan::_performRMQ(seqan::SkipList >, TStructuring>*, TBorder&, TSize, TKey, TObject*&) [with TObject = seqan::ChainPoint_, seqan::Array<1u> >, TSpec = const seqan::Tag, TStructuring = seqan::SemiDeferred, TBorder = seqan::ChainPoint_, seqan::Array<1u> >, TSize = unsigned int, TKey = int]': /«PKGBUILDDIR»/seqan/chaining/chain_point.h:68:26: warning: array subscript is above array bounds [-Warray-bounds] /«PKGBUILDDIR»/seqan/chaining/chain_point.h:68:26: warning: array subscript is above array bounds [-Warray-bounds] Linking CXX executable seeds cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/seeds.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/seeds.dir/«PKGBUILDDIR»/demos/seeds.cpp.o -o seeds -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 54%] Built target seeds /usr/bin/make -f demos/CMakeFiles/segmentalignment.dir/build.make demos/CMakeFiles/segmentalignment.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/segmentalignment.dir/DependInfo.cmake --color= Scanning dependencies of target segmentalignment make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/segmentalignment.dir/build.make demos/CMakeFiles/segmentalignment.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 51 [ 55%] Building CXX object demos/CMakeFiles/segmentalignment.dir/«PKGBUILDDIR»/demos/segmentalignment.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/segmentalignment.dir/«PKGBUILDDIR»/demos/segmentalignment.cpp.o -c /«PKGBUILDDIR»/demos/segmentalignment.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/score.h:40, from /«PKGBUILDDIR»/seqan/graph_msa.h:37, from /«PKGBUILDDIR»/demos/segmentalignment.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/refinement.h:64:0, from /«PKGBUILDDIR»/seqan/graph_msa.h:40, from /«PKGBUILDDIR»/demos/segmentalignment.cpp:2: /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Owner >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Owner >]' /«PKGBUILDDIR»/demos/segmentalignment.cpp:51:34: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Owner >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Owner >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Owner >]' /«PKGBUILDDIR»/demos/segmentalignment.cpp:51:34: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] Linking CXX executable segmentalignment cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentalignment.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/segmentalignment.dir/«PKGBUILDDIR»/demos/segmentalignment.cpp.o -o segmentalignment -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 51 [ 55%] Built target segmentalignment /usr/bin/make -f demos/CMakeFiles/sequence_length.dir/build.make demos/CMakeFiles/sequence_length.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/sequence_length.dir/DependInfo.cmake --color= Scanning dependencies of target sequence_length make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/sequence_length.dir/build.make demos/CMakeFiles/sequence_length.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 54 [ 56%] Building CXX object demos/CMakeFiles/sequence_length.dir/«PKGBUILDDIR»/demos/sequence_length.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/sequence_length.dir/«PKGBUILDDIR»/demos/sequence_length.cpp.o -c /«PKGBUILDDIR»/demos/sequence_length.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/sequence_length.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable sequence_length cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/sequence_length.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/sequence_length.dir/«PKGBUILDDIR»/demos/sequence_length.cpp.o -o sequence_length -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 54 [ 56%] Built target sequence_length /usr/bin/make -f demos/CMakeFiles/swift_verification.dir/build.make demos/CMakeFiles/swift_verification.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/swift_verification.dir/DependInfo.cmake --color= Scanning dependencies of target swift_verification make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/swift_verification.dir/build.make demos/CMakeFiles/swift_verification.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 57 [ 57%] Building CXX object demos/CMakeFiles/swift_verification.dir/«PKGBUILDDIR»/demos/swift_verification.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/swift_verification.dir/«PKGBUILDDIR»/demos/swift_verification.cpp.o -c /«PKGBUILDDIR»/demos/swift_verification.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/swift_verification.cpp:1: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable swift_verification cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/swift_verification.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/swift_verification.dir/«PKGBUILDDIR»/demos/swift_verification.cpp.o -o swift_verification -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 57 [ 57%] Built target swift_verification /usr/bin/make -f demos/CMakeFiles/template_subclassing.dir/build.make demos/CMakeFiles/template_subclassing.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/template_subclassing.dir/DependInfo.cmake --color= Scanning dependencies of target template_subclassing make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/template_subclassing.dir/build.make demos/CMakeFiles/template_subclassing.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 58 [ 58%] Building CXX object demos/CMakeFiles/template_subclassing.dir/«PKGBUILDDIR»/demos/template_subclassing.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/template_subclassing.dir/«PKGBUILDDIR»/demos/template_subclassing.cpp.o -c /«PKGBUILDDIR»/demos/template_subclassing.cpp Linking CXX executable template_subclassing cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_subclassing.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/template_subclassing.dir/«PKGBUILDDIR»/demos/template_subclassing.cpp.o -o template_subclassing -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 58 [ 58%] Built target template_subclassing /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_gaps.dir/build.make demos/CMakeFiles/tutorial_alignment_gaps.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_gaps.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_gaps make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_gaps.dir/build.make demos/CMakeFiles/tutorial_alignment_gaps.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 59 [ 59%] Building CXX object demos/CMakeFiles/tutorial_alignment_gaps.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_gaps.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_gaps.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_gaps.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_gaps.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_gaps.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_alignment_gaps cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_gaps.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_gaps.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_gaps.cpp.o -o tutorial_alignment_gaps -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 59 [ 59%] Built target tutorial_alignment_gaps /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_msa.dir/build.make demos/CMakeFiles/tutorial_alignment_msa.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_msa.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_msa make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_msa.dir/build.make demos/CMakeFiles/tutorial_alignment_msa.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 60 [ 60%] Building CXX object demos/CMakeFiles/tutorial_alignment_msa.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_msa.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/refinement.h:64:0, from /«PKGBUILDDIR»/seqan/graph_align.h:39, from /«PKGBUILDDIR»/seqan/align.h:47, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp:3: /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:323:23: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, TStringSet1&, TNames&, const seqan::MsaOptions&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, TStringSet1 = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TNames = seqan::String > >, TAlphabet = seqan::SimpleType, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:387:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, const TScore&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp:20:44: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > > > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:323:23: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, TStringSet1&, TNames&, const seqan::MsaOptions&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, TStringSet1 = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TNames = seqan::String > >, TAlphabet = seqan::SimpleType, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:387:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, const TScore&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::Blosum62_> >]' /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp:20:44: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] Linking CXX executable tutorial_alignment_msa cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_msa.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_msa.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa.cpp.o -o tutorial_alignment_msa -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 60 [ 60%] Built target tutorial_alignment_msa /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_msa_assignment1.dir/build.make demos/CMakeFiles/tutorial_alignment_msa_assignment1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_msa_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_msa_assignment1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_msa_assignment1.dir/build.make demos/CMakeFiles/tutorial_alignment_msa_assignment1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 61 [ 61%] Building CXX object demos/CMakeFiles/tutorial_alignment_msa_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_msa_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/refinement.h:64:0, from /«PKGBUILDDIR»/seqan/graph_align.h:39, from /«PKGBUILDDIR»/seqan/align.h:47, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp:3: /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:323:23: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, TStringSet1&, TNames&, const seqan::MsaOptions&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TStringSet1 = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TNames = seqan::String > >, TAlphabet = seqan::SimpleType, TScore = seqan::Score, seqan::Blosum80_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:387:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, const TScore&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::Blosum80_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:401:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Align&, const TScore&) [with TSource = seqan::String, seqan::Alloc >, TSpec = seqan::ArrayGaps, TScore = seqan::Score, seqan::Blosum80_> >]' /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp:18:45: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:493:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h: In function 'void seqan::_createTreesForAllSequences(seqan::String&, seqan::String&, TAlignmentString&, seqan::StringSet&, TSeqMap&, TValue) [with TGraph = seqan::Graph > >, TPropertyMap = seqan::String > > > >, TAlignmentString = seqan::String >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TValue = unsigned int, TSeqMap = std::map]': /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:487:2: instantiated from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >, TAnnotation = bool, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >, TScore = unsigned int, TTagSpec = seqan::TagExactRefinement_, typename seqan::Size::Type>::Type = unsigned int]' /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:661:2: instantiated from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >, TOutGraph = seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, const seqan::Tag > >, TSequence = seqan::String, seqan::Alloc >, TSetSpec = seqan::Dependent >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_base.h:115:2: instantiated from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::String&, seqan::Graph >&, FractionalScore) [with TFragment = seqan::Fragment<>, TSpec1 = seqan::Alloc, TScoreValue = int, TSpec2 = seqan::Alloc, TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = unsigned int, TSpec = const seqan::Tag, seqan::FractionalScore = const seqan::Tag]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:323:23: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, TStringSet1&, TNames&, const seqan::MsaOptions&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TStringSet1 = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TNames = seqan::String > >, TAlphabet = seqan::SimpleType, TScore = seqan::Score, seqan::Blosum80_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:387:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Graph >&, const TScore&) [with TStringSet = seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, TCargo = void, TSpec = const seqan::Tag, TScore = seqan::Score, seqan::Blosum80_> >]' /«PKGBUILDDIR»/seqan/graph_msa/graph_align_tcoffee_msa.h:401:2: instantiated from 'void seqan::globalMsaAlignment(seqan::Align&, const TScore&) [with TSource = seqan::String, seqan::Alloc >, TSpec = seqan::ArrayGaps, TScore = seqan::Score, seqan::Blosum80_> >]' /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp:18:45: instantiated from here /«PKGBUILDDIR»/seqan/refinement/graph_algorithm_refine_exact_iterative.h:220:9: warning: variable 'duration' set but not used [-Wunused-but-set-variable] Linking CXX executable tutorial_alignment_msa_assignment1 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_msa_assignment1.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_msa_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_msa_assignment1.cpp.o -o tutorial_alignment_msa_assignment1 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 61 [ 61%] Built target tutorial_alignment_msa_assignment1 /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_pairwise_global.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_pairwise_global make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 62 [ 62%] Building CXX object demos/CMakeFiles/tutorial_alignment_pairwise_global.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_pairwise_global.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_alignment_pairwise_global cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_pairwise_global.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_pairwise_global.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global.cpp.o -o tutorial_alignment_pairwise_global -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 62 [ 62%] Built target tutorial_alignment_pairwise_global /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global2.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global2.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_pairwise_global2.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_pairwise_global2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global2.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global2.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 62%] Building CXX object demos/CMakeFiles/tutorial_alignment_pairwise_global2.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global2.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_pairwise_global2.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global2.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global2.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global2.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_alignment_pairwise_global2 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_pairwise_global2.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_pairwise_global2.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global2.cpp.o -o tutorial_alignment_pairwise_global2 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 62%] Built target tutorial_alignment_pairwise_global2 /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_pairwise_global_assignment1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 63 [ 63%] Building CXX object demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_alignment_pairwise_global_assignment1 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_pairwise_global_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp.o -o tutorial_alignment_pairwise_global_assignment1 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 63 [ 63%] Built target tutorial_alignment_pairwise_global_assignment1 /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_pairwise_global_assignment2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 64 [ 64%] Building CXX object demos/CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_alignment_pairwise_global_assignment2 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_pairwise_global_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp.o -o tutorial_alignment_pairwise_global_assignment2 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 64 [ 64%] Built target tutorial_alignment_pairwise_global_assignment2 /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_local.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_local.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_pairwise_local.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_pairwise_local make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_local.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_local.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 65 [ 65%] Building CXX object demos/CMakeFiles/tutorial_alignment_pairwise_local.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_pairwise_local.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_alignment_pairwise_local cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_pairwise_local.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_pairwise_local.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local.cpp.o -o tutorial_alignment_pairwise_local -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 65 [ 65%] Built target tutorial_alignment_pairwise_local /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_alignment_pairwise_local_assignment1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/build.make demos/CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 66 [ 66%] Building CXX object demos/CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_alignment_pairwise_local_assignment1 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_alignment_pairwise_local_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp.o -o tutorial_alignment_pairwise_local_assignment1 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 66 [ 66%] Built target tutorial_alignment_pairwise_local_assignment1 /usr/bin/make -f demos/CMakeFiles/tutorial_allocator.dir/build.make demos/CMakeFiles/tutorial_allocator.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_allocator.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_allocator make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_allocator.dir/build.make demos/CMakeFiles/tutorial_allocator.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 66%] Building CXX object demos/CMakeFiles/tutorial_allocator.dir/«PKGBUILDDIR»/demos/tutorial/basics/allocator.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_allocator.dir/«PKGBUILDDIR»/demos/tutorial/basics/allocator.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/basics/allocator.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/basics/allocator.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_allocator cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_allocator.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_allocator.dir/«PKGBUILDDIR»/demos/tutorial/basics/allocator.cpp.o -o tutorial_allocator -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 66%] Built target tutorial_allocator /usr/bin/make -f demos/CMakeFiles/tutorial_clip_alignments.dir/build.make demos/CMakeFiles/tutorial_clip_alignments.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_clip_alignments.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_clip_alignments make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_clip_alignments.dir/build.make demos/CMakeFiles/tutorial_clip_alignments.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 67 [ 67%] Building CXX object demos/CMakeFiles/tutorial_clip_alignments.dir/«PKGBUILDDIR»/demos/tutorial/howto/clip_alignments.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_clip_alignments.dir/«PKGBUILDDIR»/demos/tutorial/howto/clip_alignments.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/howto/clip_alignments.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/file.h:47, from /«PKGBUILDDIR»/demos/tutorial/howto/clip_alignments.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_clip_alignments cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_clip_alignments.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_clip_alignments.dir/«PKGBUILDDIR»/demos/tutorial/howto/clip_alignments.cpp.o -o tutorial_clip_alignments -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 67 [ 67%] Built target tutorial_clip_alignments /usr/bin/make -f demos/CMakeFiles/tutorial_cmdparser_example.dir/build.make demos/CMakeFiles/tutorial_cmdparser_example.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_cmdparser_example.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_cmdparser_example make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_cmdparser_example.dir/build.make demos/CMakeFiles/tutorial_cmdparser_example.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 68 [ 68%] Building CXX object demos/CMakeFiles/tutorial_cmdparser_example.dir/«PKGBUILDDIR»/demos/tutorial/howto/cmdparser_example.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_cmdparser_example.dir/«PKGBUILDDIR»/demos/tutorial/howto/cmdparser_example.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/howto/cmdparser_example.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/howto/cmdparser_example.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_cmdparser_example cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_cmdparser_example.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_cmdparser_example.dir/«PKGBUILDDIR»/demos/tutorial/howto/cmdparser_example.cpp.o -o tutorial_cmdparser_example -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 68 [ 68%] Built target tutorial_cmdparser_example /usr/bin/make -f demos/CMakeFiles/tutorial_count_characters.dir/build.make demos/CMakeFiles/tutorial_count_characters.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_count_characters.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_count_characters make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_count_characters.dir/build.make demos/CMakeFiles/tutorial_count_characters.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 69 [ 69%] Building CXX object demos/CMakeFiles/tutorial_count_characters.dir/«PKGBUILDDIR»/demos/tutorial/sequence/count_characters.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_count_characters.dir/«PKGBUILDDIR»/demos/tutorial/sequence/count_characters.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/sequence/count_characters.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/tutorial/sequence/count_characters.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_count_characters cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_count_characters.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_count_characters.dir/«PKGBUILDDIR»/demos/tutorial/sequence/count_characters.cpp.o -o tutorial_count_characters -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 69 [ 69%] Built target tutorial_count_characters /usr/bin/make -f demos/CMakeFiles/tutorial_find_approx.dir/build.make demos/CMakeFiles/tutorial_find_approx.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_approx.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_approx make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_approx.dir/build.make demos/CMakeFiles/tutorial_find_approx.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 70 [ 70%] Building CXX object demos/CMakeFiles/tutorial_find_approx.dir/«PKGBUILDDIR»/demos/tutorial/find/find_approx.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_approx.dir/«PKGBUILDDIR»/demos/tutorial/find/find_approx.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find/find_approx.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/demos/tutorial/find/find_approx.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_approx cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_approx.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_approx.dir/«PKGBUILDDIR»/demos/tutorial/find/find_approx.cpp.o -o tutorial_find_approx -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 70 [ 70%] Built target tutorial_find_approx /usr/bin/make -f demos/CMakeFiles/tutorial_find_assignment1.dir/build.make demos/CMakeFiles/tutorial_find_assignment1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_assignment1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_assignment1.dir/build.make demos/CMakeFiles/tutorial_find_assignment1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 70%] Building CXX object demos/CMakeFiles/tutorial_find_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment1.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment1.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find/find_assignment1.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/demos/tutorial/find/find_assignment1.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_assignment1 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_assignment1.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment1.cpp.o -o tutorial_find_assignment1 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 70%] Built target tutorial_find_assignment1 /usr/bin/make -f demos/CMakeFiles/tutorial_find_assignment2.dir/build.make demos/CMakeFiles/tutorial_find_assignment2.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_assignment2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_assignment2.dir/build.make demos/CMakeFiles/tutorial_find_assignment2.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 71 [ 71%] Building CXX object demos/CMakeFiles/tutorial_find_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment2.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment2.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find/find_assignment2.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/demos/tutorial/find/find_assignment2.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_assignment2 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_assignment2.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment2.cpp.o -o tutorial_find_assignment2 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 71 [ 71%] Built target tutorial_find_assignment2 /usr/bin/make -f demos/CMakeFiles/tutorial_find_assignment3.dir/build.make demos/CMakeFiles/tutorial_find_assignment3.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_assignment3 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_assignment3.dir/build.make demos/CMakeFiles/tutorial_find_assignment3.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 72 [ 72%] Building CXX object demos/CMakeFiles/tutorial_find_assignment3.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment3.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_assignment3.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment3.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find/find_assignment3.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/find/find_assignment3.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_assignment3 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_assignment3.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_assignment3.dir/«PKGBUILDDIR»/demos/tutorial/find/find_assignment3.cpp.o -o tutorial_find_assignment3 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 72 [ 72%] Built target tutorial_find_assignment3 /usr/bin/make -f demos/CMakeFiles/tutorial_find_exact.dir/build.make demos/CMakeFiles/tutorial_find_exact.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_exact.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_exact make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_exact.dir/build.make demos/CMakeFiles/tutorial_find_exact.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 73 [ 73%] Building CXX object demos/CMakeFiles/tutorial_find_exact.dir/«PKGBUILDDIR»/demos/tutorial/find/find_exact.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_exact.dir/«PKGBUILDDIR»/demos/tutorial/find/find_exact.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find/find_exact.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find.h:43, from /«PKGBUILDDIR»/demos/tutorial/find/find_exact.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_exact cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_exact.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_exact.dir/«PKGBUILDDIR»/demos/tutorial/find/find_exact.cpp.o -o tutorial_find_exact -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 73 [ 73%] Built target tutorial_find_exact /usr/bin/make -f demos/CMakeFiles/tutorial_find_index.dir/build.make demos/CMakeFiles/tutorial_find_index.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_index.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_index make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_index.dir/build.make demos/CMakeFiles/tutorial_find_index.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 74 [ 74%] Building CXX object demos/CMakeFiles/tutorial_find_index.dir/«PKGBUILDDIR»/demos/tutorial/find/find_index.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_index.dir/«PKGBUILDDIR»/demos/tutorial/find/find_index.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find/find_index.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/find/find_index.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_index cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_index.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_index.dir/«PKGBUILDDIR»/demos/tutorial/find/find_index.cpp.o -o tutorial_find_index -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 74 [ 74%] Built target tutorial_find_index /usr/bin/make -f demos/CMakeFiles/tutorial_find_index_multiple.dir/build.make demos/CMakeFiles/tutorial_find_index_multiple.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_index_multiple.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_index_multiple make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_index_multiple.dir/build.make demos/CMakeFiles/tutorial_find_index_multiple.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 75 [ 75%] Building CXX object demos/CMakeFiles/tutorial_find_index_multiple.dir/«PKGBUILDDIR»/demos/tutorial/find/find_index_multiple.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_index_multiple.dir/«PKGBUILDDIR»/demos/tutorial/find/find_index_multiple.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find/find_index_multiple.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/find/find_index_multiple.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_index_multiple cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_index_multiple.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_index_multiple.dir/«PKGBUILDDIR»/demos/tutorial/find/find_index_multiple.cpp.o -o tutorial_find_index_multiple -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 75 [ 75%] Built target tutorial_find_index_multiple /usr/bin/make -f demos/CMakeFiles/tutorial_find_motif.dir/build.make demos/CMakeFiles/tutorial_find_motif.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_motif.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_motif make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_motif.dir/build.make demos/CMakeFiles/tutorial_find_motif.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 75%] Building CXX object demos/CMakeFiles/tutorial_find_motif.dir/«PKGBUILDDIR»/demos/tutorial/find_motif.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_motif.dir/«PKGBUILDDIR»/demos/tutorial/find_motif.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find_motif.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find_motif.h:45, from /«PKGBUILDDIR»/demos/tutorial/find_motif.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 In file included from /«PKGBUILDDIR»/seqan/find_motif.h:70:0, from /«PKGBUILDDIR»/demos/tutorial/find_motif.cpp:3: /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h: In function 'int seqan::_refinementStep(TString&, const seqan::String&, seqan::String&, const TType&, const TType&, const bool&, const seqan::Oops&) [with TString = seqan::String >, TType = unsigned int]': /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:479:19: instantiated from 'void seqan::findMotif(seqan::MotifFinder >&, TStrings&, TModel) [with TSeqType = char, TStrings = seqan::String > >, TModel = seqan::Oops]' /«PKGBUILDDIR»/demos/tutorial/find_motif.cpp:33:40: instantiated from here /«PKGBUILDDIR»/seqan/find_motif/find_motif_projection.h:615:9: warning: variable 'likelihood_score' set but not used [-Wunused-but-set-variable] Linking CXX executable tutorial_find_motif cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_motif.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_motif.dir/«PKGBUILDDIR»/demos/tutorial/find_motif.cpp.o -o tutorial_find_motif -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 75%] Built target tutorial_find_motif /usr/bin/make -f demos/CMakeFiles/tutorial_find_motif_pms1.dir/build.make demos/CMakeFiles/tutorial_find_motif_pms1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_find_motif_pms1.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_find_motif_pms1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_find_motif_pms1.dir/build.make demos/CMakeFiles/tutorial_find_motif_pms1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 76 [ 76%] Building CXX object demos/CMakeFiles/tutorial_find_motif_pms1.dir/«PKGBUILDDIR»/demos/tutorial/find_motif_pms1.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_find_motif_pms1.dir/«PKGBUILDDIR»/demos/tutorial/find_motif_pms1.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/find_motif_pms1.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/find_motif.h:45, from /«PKGBUILDDIR»/demos/tutorial/find_motif_pms1.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_find_motif_pms1 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_find_motif_pms1.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_find_motif_pms1.dir/«PKGBUILDDIR»/demos/tutorial/find_motif_pms1.cpp.o -o tutorial_find_motif_pms1 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 76 [ 76%] Built target tutorial_find_motif_pms1 /usr/bin/make -f demos/CMakeFiles/tutorial_graph_algo_scc.dir/build.make demos/CMakeFiles/tutorial_graph_algo_scc.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_graph_algo_scc.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_graph_algo_scc make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_graph_algo_scc.dir/build.make demos/CMakeFiles/tutorial_graph_algo_scc.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 77 [ 77%] Building CXX object demos/CMakeFiles/tutorial_graph_algo_scc.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_algo_scc.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_graph_algo_scc.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_algo_scc.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/graph/graph_algo_scc.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/tutorial/graph/graph_algo_scc.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_graph_algo_scc cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_graph_algo_scc.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_graph_algo_scc.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_algo_scc.cpp.o -o tutorial_graph_algo_scc -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 77 [ 77%] Built target tutorial_graph_algo_scc /usr/bin/make -f demos/CMakeFiles/tutorial_graph_dijkstra.dir/build.make demos/CMakeFiles/tutorial_graph_dijkstra.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_graph_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_graph_dijkstra make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_graph_dijkstra.dir/build.make demos/CMakeFiles/tutorial_graph_dijkstra.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 78 [ 78%] Building CXX object demos/CMakeFiles/tutorial_graph_dijkstra.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_dijkstra.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_graph_dijkstra.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_dijkstra.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/graph/graph_dijkstra.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/demos/tutorial/graph/graph_dijkstra.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_graph_dijkstra cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_graph_dijkstra.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_graph_dijkstra.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_dijkstra.cpp.o -o tutorial_graph_dijkstra -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 78 [ 78%] Built target tutorial_graph_dijkstra /usr/bin/make -f demos/CMakeFiles/tutorial_graph_hmm.dir/build.make demos/CMakeFiles/tutorial_graph_hmm.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_graph_hmm.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_graph_hmm make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_graph_hmm.dir/build.make demos/CMakeFiles/tutorial_graph_hmm.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 79 [ 79%] Building CXX object demos/CMakeFiles/tutorial_graph_hmm.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_hmm.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_graph_hmm.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_hmm.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/graph/graph_hmm.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/graph_types.h:41, from /«PKGBUILDDIR»/seqan/graph_algorithms.h:41, from /«PKGBUILDDIR»/demos/tutorial/graph/graph_hmm.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_graph_hmm cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_graph_hmm.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_graph_hmm.dir/«PKGBUILDDIR»/demos/tutorial/graph/graph_hmm.cpp.o -o tutorial_graph_hmm -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 79 [ 79%] Built target tutorial_graph_hmm /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment1.dir/build.make demos/CMakeFiles/tutorial_index_assignment1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_assignment1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment1.dir/build.make demos/CMakeFiles/tutorial_index_assignment1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 79%] Building CXX object demos/CMakeFiles/tutorial_index_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment1.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment1.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_assignment1.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_assignment1.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_assignment1 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_assignment1.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment1.cpp.o -o tutorial_index_assignment1 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 79%] Built target tutorial_index_assignment1 /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment2.dir/build.make demos/CMakeFiles/tutorial_index_assignment2.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_assignment2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment2.dir/build.make demos/CMakeFiles/tutorial_index_assignment2.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 80 [ 80%] Building CXX object demos/CMakeFiles/tutorial_index_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment2.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment2.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_assignment2.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_assignment2.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_assignment2 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_assignment2.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_assignment2.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment2.cpp.o -o tutorial_index_assignment2 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 80 [ 80%] Built target tutorial_index_assignment2 /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment3.dir/build.make demos/CMakeFiles/tutorial_index_assignment3.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_assignment3 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment3.dir/build.make demos/CMakeFiles/tutorial_index_assignment3.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 81 [ 81%] Building CXX object demos/CMakeFiles/tutorial_index_assignment3.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment3.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_assignment3.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment3.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_assignment3.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_assignment3.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_assignment3 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_assignment3.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_assignment3.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment3.cpp.o -o tutorial_index_assignment3 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 81 [ 81%] Built target tutorial_index_assignment3 /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment4.dir/build.make demos/CMakeFiles/tutorial_index_assignment4.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_assignment4.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_assignment4 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment4.dir/build.make demos/CMakeFiles/tutorial_index_assignment4.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 82 [ 82%] Building CXX object demos/CMakeFiles/tutorial_index_assignment4.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment4.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_assignment4.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment4.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_assignment4.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_assignment4.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_assignment4 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_assignment4.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_assignment4.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment4.cpp.o -o tutorial_index_assignment4 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 82 [ 82%] Built target tutorial_index_assignment4 /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment5.dir/build.make demos/CMakeFiles/tutorial_index_assignment5.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_assignment5.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_assignment5 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment5.dir/build.make demos/CMakeFiles/tutorial_index_assignment5.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 83 [ 83%] Building CXX object demos/CMakeFiles/tutorial_index_assignment5.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment5.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_assignment5.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment5.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_assignment5.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_assignment5.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_assignment5 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_assignment5.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_assignment5.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment5.cpp.o -o tutorial_index_assignment5 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 83 [ 83%] Built target tutorial_index_assignment5 /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment6.dir/build.make demos/CMakeFiles/tutorial_index_assignment6.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_assignment6.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_assignment6 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_assignment6.dir/build.make demos/CMakeFiles/tutorial_index_assignment6.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 83%] Building CXX object demos/CMakeFiles/tutorial_index_assignment6.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment6.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_assignment6.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment6.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_assignment6.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/align.h:43, from /«PKGBUILDDIR»/demos/tutorial/index/index_assignment6.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_assignment6 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_assignment6.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_assignment6.dir/«PKGBUILDDIR»/demos/tutorial/index/index_assignment6.cpp.o -o tutorial_index_assignment6 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 83%] Built target tutorial_index_assignment6 /usr/bin/make -f demos/CMakeFiles/tutorial_index_preorder.dir/build.make demos/CMakeFiles/tutorial_index_preorder.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_preorder.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_preorder make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_preorder.dir/build.make demos/CMakeFiles/tutorial_index_preorder.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 84 [ 84%] Building CXX object demos/CMakeFiles/tutorial_index_preorder.dir/«PKGBUILDDIR»/demos/tutorial/index/index_preorder.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_preorder.dir/«PKGBUILDDIR»/demos/tutorial/index/index_preorder.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_preorder.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_preorder.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_preorder cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_preorder.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_preorder.dir/«PKGBUILDDIR»/demos/tutorial/index/index_preorder.cpp.o -o tutorial_index_preorder -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 84 [ 84%] Built target tutorial_index_preorder /usr/bin/make -f demos/CMakeFiles/tutorial_index_property_maps.dir/build.make demos/CMakeFiles/tutorial_index_property_maps.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_property_maps.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_property_maps make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_property_maps.dir/build.make demos/CMakeFiles/tutorial_index_property_maps.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 85 [ 85%] Building CXX object demos/CMakeFiles/tutorial_index_property_maps.dir/«PKGBUILDDIR»/demos/tutorial/index/index_property_maps.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_property_maps.dir/«PKGBUILDDIR»/demos/tutorial/index/index_property_maps.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_property_maps.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_property_maps.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_property_maps cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_property_maps.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_property_maps.dir/«PKGBUILDDIR»/demos/tutorial/index/index_property_maps.cpp.o -o tutorial_index_property_maps -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 85 [ 85%] Built target tutorial_index_property_maps /usr/bin/make -f demos/CMakeFiles/tutorial_index_qgram.dir/build.make demos/CMakeFiles/tutorial_index_qgram.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_qgram.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_qgram make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_qgram.dir/build.make demos/CMakeFiles/tutorial_index_qgram.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 86 [ 86%] Building CXX object demos/CMakeFiles/tutorial_index_qgram.dir/«PKGBUILDDIR»/demos/tutorial/index/index_qgram.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_qgram.dir/«PKGBUILDDIR»/demos/tutorial/index/index_qgram.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_qgram.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_qgram.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_qgram cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_qgram.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_qgram.dir/«PKGBUILDDIR»/demos/tutorial/index/index_qgram.cpp.o -o tutorial_index_qgram -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 86 [ 86%] Built target tutorial_index_qgram /usr/bin/make -f demos/CMakeFiles/tutorial_index_search.dir/build.make demos/CMakeFiles/tutorial_index_search.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_search.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_search make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_search.dir/build.make demos/CMakeFiles/tutorial_index_search.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 87 [ 87%] Building CXX object demos/CMakeFiles/tutorial_index_search.dir/«PKGBUILDDIR»/demos/tutorial/index/index_search.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_search.dir/«PKGBUILDDIR»/demos/tutorial/index/index_search.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_search.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_search.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_search cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_search.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_search.dir/«PKGBUILDDIR»/demos/tutorial/index/index_search.cpp.o -o tutorial_index_search -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 87 [ 87%] Built target tutorial_index_search /usr/bin/make -f demos/CMakeFiles/tutorial_index_search2.dir/build.make demos/CMakeFiles/tutorial_index_search2.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_index_search2.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_index_search2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_index_search2.dir/build.make demos/CMakeFiles/tutorial_index_search2.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 87%] Building CXX object demos/CMakeFiles/tutorial_index_search2.dir/«PKGBUILDDIR»/demos/tutorial/index/index_search2.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_index_search2.dir/«PKGBUILDDIR»/demos/tutorial/index/index_search2.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/index/index_search2.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/tutorial/index/index_search2.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_index_search2 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_index_search2.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_index_search2.dir/«PKGBUILDDIR»/demos/tutorial/index/index_search2.cpp.o -o tutorial_index_search2 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 87%] Built target tutorial_index_search2 /usr/bin/make -f demos/CMakeFiles/tutorial_init_score.dir/build.make demos/CMakeFiles/tutorial_init_score.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_init_score.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_init_score make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_init_score.dir/build.make demos/CMakeFiles/tutorial_init_score.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 88 [ 88%] Building CXX object demos/CMakeFiles/tutorial_init_score.dir/«PKGBUILDDIR»/demos/tutorial/scores/init_score.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_init_score.dir/«PKGBUILDDIR»/demos/tutorial/scores/init_score.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/scores/init_score.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/scores/init_score.cpp:29: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_init_score cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_init_score.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_init_score.dir/«PKGBUILDDIR»/demos/tutorial/scores/init_score.cpp.o -o tutorial_init_score -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 88 [ 88%] Built target tutorial_init_score /usr/bin/make -f demos/CMakeFiles/tutorial_load_score.dir/build.make demos/CMakeFiles/tutorial_load_score.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_load_score.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_load_score make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_load_score.dir/build.make demos/CMakeFiles/tutorial_load_score.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 89 [ 89%] Building CXX object demos/CMakeFiles/tutorial_load_score.dir/«PKGBUILDDIR»/demos/tutorial/scores/load_score.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_load_score.dir/«PKGBUILDDIR»/demos/tutorial/scores/load_score.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/scores/load_score.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/scores/load_score.cpp:25: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_load_score cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_load_score.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_load_score.dir/«PKGBUILDDIR»/demos/tutorial/scores/load_score.cpp.o -o tutorial_load_score -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 89 [ 89%] Built target tutorial_load_score /usr/bin/make -f demos/CMakeFiles/tutorial_minimapper.dir/build.make demos/CMakeFiles/tutorial_minimapper.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_minimapper.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_minimapper make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_minimapper.dir/build.make demos/CMakeFiles/tutorial_minimapper.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 90 [ 90%] Building CXX object demos/CMakeFiles/tutorial_minimapper.dir/«PKGBUILDDIR»/demos/tutorial/read_mapping/minimapper.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_minimapper.dir/«PKGBUILDDIR»/demos/tutorial/read_mapping/minimapper.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/read_mapping/minimapper.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/read_mapping/minimapper.cpp:33: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_minimapper cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_minimapper.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_minimapper.dir/«PKGBUILDDIR»/demos/tutorial/read_mapping/minimapper.cpp.o -o tutorial_minimapper -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 90 [ 90%] Built target tutorial_minimapper /usr/bin/make -f demos/CMakeFiles/tutorial_random_examples.dir/build.make demos/CMakeFiles/tutorial_random_examples.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_random_examples.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_random_examples make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_random_examples.dir/build.make demos/CMakeFiles/tutorial_random_examples.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 91 [ 91%] Building CXX object demos/CMakeFiles/tutorial_random_examples.dir/«PKGBUILDDIR»/demos/tutorial/random/random_examples.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_random_examples.dir/«PKGBUILDDIR»/demos/tutorial/random/random_examples.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/random/random_examples.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/random/random_examples.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_random_examples cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_random_examples.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_random_examples.dir/«PKGBUILDDIR»/demos/tutorial/random/random_examples.cpp.o -o tutorial_random_examples -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 91 [ 91%] Built target tutorial_random_examples /usr/bin/make -f demos/CMakeFiles/tutorial_replace_as.dir/build.make demos/CMakeFiles/tutorial_replace_as.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_replace_as.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_replace_as make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_replace_as.dir/build.make demos/CMakeFiles/tutorial_replace_as.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 91%] Building CXX object demos/CMakeFiles/tutorial_replace_as.dir/«PKGBUILDDIR»/demos/tutorial/sequence/replace_as.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_replace_as.dir/«PKGBUILDDIR»/demos/tutorial/sequence/replace_as.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/sequence/replace_as.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/file.h:47, from /«PKGBUILDDIR»/demos/tutorial/sequence/replace_as.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_replace_as cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_replace_as.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_replace_as.dir/«PKGBUILDDIR»/demos/tutorial/sequence/replace_as.cpp.o -o tutorial_replace_as -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 91%] Built target tutorial_replace_as /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_assignment1.dir/build.make demos/CMakeFiles/tutorial_seeds_assignment1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_seeds_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_seeds_assignment1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_assignment1.dir/build.make demos/CMakeFiles/tutorial_seeds_assignment1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 92 [ 92%] Building CXX object demos/CMakeFiles/tutorial_seeds_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_assignment1.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_seeds_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_assignment1.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_assignment1.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/seeds.h:36, from /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_assignment1.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_seeds_assignment1 cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_seeds_assignment1.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_seeds_assignment1.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_assignment1.cpp.o -o tutorial_seeds_assignment1 -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 92 [ 92%] Built target tutorial_seeds_assignment1 /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_basics.dir/build.make demos/CMakeFiles/tutorial_seeds_basics.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_seeds_basics.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_seeds_basics make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_basics.dir/build.make demos/CMakeFiles/tutorial_seeds_basics.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 93 [ 93%] Building CXX object demos/CMakeFiles/tutorial_seeds_basics.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_basics.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_seeds_basics.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_basics.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_basics.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/seeds.h:36, from /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_basics.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_seeds_basics cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_seeds_basics.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_seeds_basics.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_basics.cpp.o -o tutorial_seeds_basics -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 93 [ 93%] Built target tutorial_seeds_basics /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_chain.dir/build.make demos/CMakeFiles/tutorial_seeds_chain.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_seeds_chain.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_seeds_chain make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_chain.dir/build.make demos/CMakeFiles/tutorial_seeds_chain.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 94 [ 94%] Building CXX object demos/CMakeFiles/tutorial_seeds_chain.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_chain.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_seeds_chain.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_chain.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_chain.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/seeds.h:36, from /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_chain.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_seeds_chain cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_seeds_chain.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_seeds_chain.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_chain.cpp.o -o tutorial_seeds_chain -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 94 [ 94%] Built target tutorial_seeds_chain /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/build.make demos/CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_seeds_extend_bandedAlign make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/build.make demos/CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 95 [ 95%] Building CXX object demos/CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_extend_bandedAlign.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_extend_bandedAlign.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_extend_bandedAlign.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/seeds.h:36, from /«PKGBUILDDIR»/demos/tutorial/seeds/seeds_extend_bandedAlign.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_seeds_extend_bandedAlign cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_seeds_extend_bandedAlign.dir/«PKGBUILDDIR»/demos/tutorial/seeds/seeds_extend_bandedAlign.cpp.o -o tutorial_seeds_extend_bandedAlign -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 95 [ 95%] Built target tutorial_seeds_extend_bandedAlign /usr/bin/make -f demos/CMakeFiles/tutorial_sequence_all_strings.dir/build.make demos/CMakeFiles/tutorial_sequence_all_strings.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_sequence_all_strings.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_sequence_all_strings make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_sequence_all_strings.dir/build.make demos/CMakeFiles/tutorial_sequence_all_strings.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 95%] Building CXX object demos/CMakeFiles/tutorial_sequence_all_strings.dir/«PKGBUILDDIR»/demos/tutorial/sequence/sequence_all_strings.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_sequence_all_strings.dir/«PKGBUILDDIR»/demos/tutorial/sequence/sequence_all_strings.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/sequence/sequence_all_strings.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/tutorial/sequence/sequence_all_strings.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_sequence_all_strings cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_sequence_all_strings.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_sequence_all_strings.dir/«PKGBUILDDIR»/demos/tutorial/sequence/sequence_all_strings.cpp.o -o tutorial_sequence_all_strings -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles [ 95%] Built target tutorial_sequence_all_strings /usr/bin/make -f demos/CMakeFiles/tutorial_sequence_iterator_demo.dir/build.make demos/CMakeFiles/tutorial_sequence_iterator_demo.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_sequence_iterator_demo.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_sequence_iterator_demo make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_sequence_iterator_demo.dir/build.make demos/CMakeFiles/tutorial_sequence_iterator_demo.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 96 [ 96%] Building CXX object demos/CMakeFiles/tutorial_sequence_iterator_demo.dir/«PKGBUILDDIR»/demos/tutorial/sequence/sequence_iterator_demo.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_sequence_iterator_demo.dir/«PKGBUILDDIR»/demos/tutorial/sequence/sequence_iterator_demo.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/sequence/sequence_iterator_demo.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/tutorial/sequence/sequence_iterator_demo.cpp:5: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_sequence_iterator_demo cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_sequence_iterator_demo.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_sequence_iterator_demo.dir/«PKGBUILDDIR»/demos/tutorial/sequence/sequence_iterator_demo.cpp.o -o tutorial_sequence_iterator_demo -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 96 [ 96%] Built target tutorial_sequence_iterator_demo /usr/bin/make -f demos/CMakeFiles/tutorial_show_alphabets.dir/build.make demos/CMakeFiles/tutorial_show_alphabets.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_show_alphabets.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_show_alphabets make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_show_alphabets.dir/build.make demos/CMakeFiles/tutorial_show_alphabets.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 97 [ 97%] Building CXX object demos/CMakeFiles/tutorial_show_alphabets.dir/«PKGBUILDDIR»/demos/tutorial/basics/show_alphabets.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_show_alphabets.dir/«PKGBUILDDIR»/demos/tutorial/basics/show_alphabets.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/basics/show_alphabets.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/demos/tutorial/basics/show_alphabets.cpp:2: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_show_alphabets cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_show_alphabets.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_show_alphabets.dir/«PKGBUILDDIR»/demos/tutorial/basics/show_alphabets.cpp.o -o tutorial_show_alphabets -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 97 [ 97%] Built target tutorial_show_alphabets /usr/bin/make -f demos/CMakeFiles/tutorial_strings.dir/build.make demos/CMakeFiles/tutorial_strings.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_strings.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_strings make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_strings.dir/build.make demos/CMakeFiles/tutorial_strings.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 98 [ 98%] Building CXX object demos/CMakeFiles/tutorial_strings.dir/«PKGBUILDDIR»/demos/tutorial/basics/strings.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_strings.dir/«PKGBUILDDIR»/demos/tutorial/basics/strings.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/basics/strings.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/basics/strings.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_strings cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_strings.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_strings.dir/«PKGBUILDDIR»/demos/tutorial/basics/strings.cpp.o -o tutorial_strings -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 98 [ 98%] Built target tutorial_strings /usr/bin/make -f demos/CMakeFiles/tutorial_swap.dir/build.make demos/CMakeFiles/tutorial_swap.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/tutorial_swap.dir/DependInfo.cmake --color= Scanning dependencies of target tutorial_swap make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/tutorial_swap.dir/build.make demos/CMakeFiles/tutorial_swap.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 99 [ 99%] Building CXX object demos/CMakeFiles/tutorial_swap.dir/«PKGBUILDDIR»/demos/tutorial/basics/swap.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/tutorial_swap.dir/«PKGBUILDDIR»/demos/tutorial/basics/swap.cpp.o -c /«PKGBUILDDIR»/demos/tutorial/basics/swap.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/demos/tutorial/basics/swap.cpp:3: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable tutorial_swap cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/tutorial_swap.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/tutorial_swap.dir/«PKGBUILDDIR»/demos/tutorial/basics/swap.cpp.o -o tutorial_swap -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 99 [ 99%] Built target tutorial_swap /usr/bin/make -f demos/CMakeFiles/zscore.dir/build.make demos/CMakeFiles/zscore.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR»/cmake /«PKGBUILDDIR»/cmake/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos/CMakeFiles/zscore.dir/DependInfo.cmake --color= Scanning dependencies of target zscore make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/make -f demos/CMakeFiles/zscore.dir/build.make demos/CMakeFiles/zscore.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 100 [100%] Building CXX object demos/CMakeFiles/zscore.dir/«PKGBUILDDIR»/demos/zscore.cpp.o cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 -I/«PKGBUILDDIR»/lib/samtools -I/«PKGBUILDDIR» -o CMakeFiles/zscore.dir/«PKGBUILDDIR»/demos/zscore.cpp.o -c /«PKGBUILDDIR»/demos/zscore.cpp In file included from /«PKGBUILDDIR»/seqan/basic.h:67:0, from /«PKGBUILDDIR»/seqan/sequence.h:50, from /«PKGBUILDDIR»/seqan/index.h:39, from /«PKGBUILDDIR»/demos/zscore.cpp:4: /«PKGBUILDDIR»/seqan/basic/basic_testing.h:400:17: note: the mangling of 'va_list' has changed in GCC 4.4 Linking CXX executable zscore cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/zscore.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -g -fno-omit-frame-pointer -DSEQAN_ENABLE_DEBUG=1 -DSEQAN_ENABLE_TESTING=0 CMakeFiles/zscore.dir/«PKGBUILDDIR»/demos/zscore.cpp.o -o zscore -rdynamic -L/«PKGBUILDDIR»/lib -lrt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 100 [100%] Built target zscore make[2]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "obj-arm-linux-gnueabihf" # create backups of original *generated_forwards.h files to build twice in a row for header in `find seqan -name "*generated_forwards.h"` ; do \ mkdir -p orig/`dirname $header` ; \ cp -a $header orig/${header} ; \ done /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable DEB_MAKE_CHECK_TARGET unset, not running checks DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target Adding cdbs dependencies to debian/seqan-apps.substvars dh_installdirs -pseqan-apps #install binaries for APP in `find /«PKGBUILDDIR»/obj*/apps -mindepth 1 -maxdepth 1 -executable -type f` ; do \ cp -a $APP /«PKGBUILDDIR»/debian/seqan-apps/usr/lib/sequan/bin/ ; done #install readmes for APP in `find apps -name README` ; do \ app=`echo $APP | sed 's?.*apps/\(.\+\)/README?\1?'` ; \ echo $app ; \ cp -a $APP /«PKGBUILDDIR»/debian/seqan-apps/usr/share/doc/seqan-apps/README.$app ; \ done razers2 stellar sak razers splazers seqan_tcoffee micro_razers mason dfi insegt dh_installdocs -pseqan-apps dh_installexamples -pseqan-apps dh_installman -pseqan-apps dh_installinfo -pseqan-apps dh_installmenu -pseqan-apps dh_installcron -pseqan-apps dh_installinit -pseqan-apps dh_installdebconf -pseqan-apps dh_installemacsen -pseqan-apps dh_installcatalogs -pseqan-apps dh_installpam -pseqan-apps dh_installlogrotate -pseqan-apps dh_installlogcheck -pseqan-apps dh_installchangelogs -pseqan-apps dh_installudev -pseqan-apps dh_lintian -pseqan-apps dh_bugfiles -pseqan-apps dh_install -pseqan-apps dh_link -pseqan-apps dh_installmime -pseqan-apps dh_installgsettings -pseqan-apps dh_strip -pseqan-apps dh_compress -pseqan-apps dh_fixperms -pseqan-apps dh_makeshlibs -pseqan-apps dh_installdeb -pseqan-apps dh_perl -pseqan-apps dh_shlibdeps -pseqan-apps dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/insegt contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/rep_sep contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/pair_align contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/stellar contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/param_chooser contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/mason contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/rabema contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/razers contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/seqcons contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/razers2 contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/splazers contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/tree_recon contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/micro_razers contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/snp_store contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/dfi contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/sak contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/seqan-apps/usr/lib/sequan/bin/seqan_tcoffee contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seqan-apps/usr/lib/sequan/bin/insegt debian/seqan-apps/usr/lib/sequan/bin/rep_sep debian/seqan-apps/usr/lib/sequan/bin/pair_align debian/seqan-apps/usr/lib/sequan/bin/stellar debian/seqan-apps/usr/lib/sequan/bin/param_chooser debian/seqan-apps/usr/lib/sequan/bin/mason debian/seqan-apps/usr/lib/sequan/bin/rabema debian/seqan-apps/usr/lib/sequan/bin/razers debian/seqan-apps/usr/lib/sequan/bin/seqcons debian/seqan-apps/usr/lib/sequan/bin/razers2 debian/seqan-apps/usr/lib/sequan/bin/splazers debian/seqan-apps/usr/lib/sequan/bin/tree_recon debian/seqan-apps/usr/lib/sequan/bin/micro_razers debian/seqan-apps/usr/lib/sequan/bin/snp_store debian/seqan-apps/usr/lib/sequan/bin/dfi debian/seqan-apps/usr/lib/sequan/bin/sak debian/seqan-apps/usr/lib/sequan/bin/seqan_tcoffee were not linked against libz.so.1 (they use none of the library's symbols). dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seqan-apps/usr/lib/sequan/bin/insegt debian/seqan-apps/usr/lib/sequan/bin/rep_sep debian/seqan-apps/usr/lib/sequan/bin/pair_align debian/seqan-apps/usr/lib/sequan/bin/stellar debian/seqan-apps/usr/lib/sequan/bin/param_chooser debian/seqan-apps/usr/lib/sequan/bin/mason debian/seqan-apps/usr/lib/sequan/bin/rabema debian/seqan-apps/usr/lib/sequan/bin/razers debian/seqan-apps/usr/lib/sequan/bin/seqcons debian/seqan-apps/usr/lib/sequan/bin/razers2 debian/seqan-apps/usr/lib/sequan/bin/splazers debian/seqan-apps/usr/lib/sequan/bin/tree_recon debian/seqan-apps/usr/lib/sequan/bin/micro_razers debian/seqan-apps/usr/lib/sequan/bin/snp_store debian/seqan-apps/usr/lib/sequan/bin/dfi debian/seqan-apps/usr/lib/sequan/bin/sak debian/seqan-apps/usr/lib/sequan/bin/seqan_tcoffee were not linked against libgomp.so.1 (they use none of the library's symbols). dh_gencontrol -pseqan-apps dh_md5sums -pseqan-apps dh_builddeb -pseqan-apps -- -Zxz dpkg-deb: building package `seqan-apps' in `../seqan-apps_1.3.1-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../seqan_1.3.1-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build seqan-1.3.1 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120505-0139 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ seqan_1.3.1-1_armhf.changes: ──────────────────────────── Format: 1.8 Date: Mon, 23 Apr 2012 13:25:17 +0200 Source: seqan Binary: seqan-apps seqan-dev Architecture: armhf Version: 1.3.1-1 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: seqan-apps - C++ library for the analysis of biological sequences seqan-dev - C++ library for the analysis of biological sequences (development Changes: seqan (1.3.1-1) unstable; urgency=low . * New upstream version * debian/watch: Adapt to new way to provide release archives * debian/orig-tar.sh: - Be less noisy - Provide fallback target dir in case .svn/deb-layout doese not exist - which is the case at least in my checkout * debian/control: - Standards-Version: 3.9.3 (no changes needed) - distinct short descriptions * debian/seqan-dev.doc-base: Provide doc-base control file * debian/rules + several debhelper files: Rely more on debhelper than manual moving around files to make debian/rules better maintaineable * debian/rules: - Do not specify single target files but rather use find to obtain files to move around - Save a copy of those files which will be removed by upstream clean target otherwise to enable building twice in a row Checksums-Sha1: 4a63d08e7ad2aab3d9d7ba9dd91da36741b32b1f 1519078 seqan-apps_1.3.1-1_armhf.deb Checksums-Sha256: 08e92b57523f4cd2ee48b7ff19a9074a1c923f2e5d34ab7a17633b82addaa222 1519078 seqan-apps_1.3.1-1_armhf.deb Files: 930ec3c020e51eac4c98a3ce86d5aa49 1519078 science optional seqan-apps_1.3.1-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ seqan-apps_1.3.1-1_armhf.deb ──────────────────────────── new debian package, version 2.0. size 1519078 bytes: control archive= 1762 bytes. 945 bytes, 19 lines control 2505 bytes, 37 lines md5sums Package: seqan-apps Source: seqan Version: 1.3.1-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 7821 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: http://www.seqan.de/ Description: C++ library for the analysis of biological sequences SeqAn is a C++ template library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. This library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. This package contains the applications dfi, pair_align, micro_razers, seqan_tcoffee, seqcons, razers and tree_recon. drwxr-xr-x root/root 0 2012-05-05 01:37 ./ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/bin/ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/lib/sequan/ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/lib/sequan/bin/ -rwxr-xr-x root/root 838096 2012-05-05 01:37 ./usr/lib/sequan/bin/razers2 -rwxr-xr-x root/root 421100 2012-05-05 01:37 ./usr/lib/sequan/bin/rabema -rwxr-xr-x root/root 469184 2012-05-05 01:37 ./usr/lib/sequan/bin/seqcons -rwxr-xr-x root/root 358728 2012-05-05 01:37 ./usr/lib/sequan/bin/stellar -rwxr-xr-x root/root 74132 2012-05-05 01:37 ./usr/lib/sequan/bin/sak -rwxr-xr-x root/root 667616 2012-05-05 01:37 ./usr/lib/sequan/bin/razers -rwxr-xr-x root/root 1040756 2012-05-05 01:37 ./usr/lib/sequan/bin/pair_align -rwxr-xr-x root/root 1030508 2012-05-05 01:37 ./usr/lib/sequan/bin/splazers -rwxr-xr-x root/root 209524 2012-05-05 01:37 ./usr/lib/sequan/bin/rep_sep -rwxr-xr-x root/root 98132 2012-05-05 01:37 ./usr/lib/sequan/bin/tree_recon -rwxr-xr-x root/root 596560 2012-05-05 01:37 ./usr/lib/sequan/bin/seqan_tcoffee -rwxr-xr-x root/root 440588 2012-05-05 01:37 ./usr/lib/sequan/bin/micro_razers -rwxr-xr-x root/root 392476 2012-05-05 01:37 ./usr/lib/sequan/bin/mason -rwxr-xr-x root/root 287328 2012-05-05 01:37 ./usr/lib/sequan/bin/dfi -rwxr-xr-x root/root 297080 2012-05-05 01:37 ./usr/lib/sequan/bin/param_chooser -rwxr-xr-x root/root 313376 2012-05-05 01:37 ./usr/lib/sequan/bin/insegt -rwxr-xr-x root/root 371184 2012-05-05 01:37 ./usr/lib/sequan/bin/snp_store drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/share/doc/seqan-apps/ -rw-r--r-- root/root 4874 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.stellar.gz -rw-r--r-- root/root 6487 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.razers.gz -rw-r--r-- root/root 1799 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.dfi.gz -rw-r--r-- root/root 2728 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.micro_razers.gz -rw-r--r-- root/root 6487 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.razers2.gz -rw-r--r-- root/root 1139 2012-04-23 14:09 ./usr/share/doc/seqan-apps/changelog.Debian.gz -rw-r--r-- root/root 1766 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.seqan_tcoffee -rw-r--r-- root/root 2897 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.insegt.gz -rw-r--r-- root/root 2656 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.mason -rw-r--r-- root/root 1653 2012-03-14 08:35 ./usr/share/doc/seqan-apps/changelog.gz -rw-r--r-- root/root 5607 2011-09-20 00:19 ./usr/share/doc/seqan-apps/copyright -rw-r--r-- root/root 6534 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.splazers.gz -rw-r--r-- root/root 952 2012-03-14 08:35 ./usr/share/doc/seqan-apps/README.sak drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-05 01:37 ./usr/share/man/man1/ -rw-r--r-- root/root 825 2012-05-05 01:37 ./usr/share/man/man1/seqcons.1.gz -rw-r--r-- root/root 995 2012-05-05 01:37 ./usr/share/man/man1/micro_razers.1.gz -rw-r--r-- root/root 903 2012-05-05 01:37 ./usr/share/man/man1/pair_align.1.gz -rw-r--r-- root/root 641 2012-05-05 01:37 ./usr/share/man/man1/dfi.1.gz -rw-r--r-- root/root 1096 2012-05-05 01:37 ./usr/share/man/man1/seqan_tcoffee.1.gz -rw-r--r-- root/root 719 2012-05-05 01:37 ./usr/share/man/man1/tree_recon.1.gz -rw-r--r-- root/root 1445 2012-05-05 01:37 ./usr/share/man/man1/razers.1.gz lrwxrwxrwx root/root 0 2012-05-05 01:37 ./usr/bin/seqcons -> ../lib/sequan/bin/seqcons lrwxrwxrwx root/root 0 2012-05-05 01:37 ./usr/bin/razers -> ../lib/sequan/bin/razers lrwxrwxrwx root/root 0 2012-05-05 01:37 ./usr/bin/pair_align -> ../lib/sequan/bin/pair_align lrwxrwxrwx root/root 0 2012-05-05 01:37 ./usr/bin/tree_recon -> ../lib/sequan/bin/tree_recon lrwxrwxrwx root/root 0 2012-05-05 01:37 ./usr/bin/seqan_tcoffee -> ../lib/sequan/bin/seqan_tcoffee lrwxrwxrwx root/root 0 2012-05-05 01:37 ./usr/bin/micro_razers -> ../lib/sequan/bin/micro_razers lrwxrwxrwx root/root 0 2012-05-05 01:37 ./usr/bin/dfi -> ../lib/sequan/bin/dfi ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* cdbs* cmake* cmake-data* debhelper* emacsen-common* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libarchive12* libbam-dev* libboost-dev* libboost1.49-dev* libcroco3* libcurl3* libcurl3-gnutls* libexpat1* libffi5* libgcrypt11* libglib2.0-0* libgnutls26* libgpg-error0* libgssapi-krb5-2* libidn11* libk5crypto3* libkeyutils1* libkrb5-3* libkrb5support0* libldap-2.4-2* libmagic1* libnettle4* libp11-kit0* libpcre3* libpipeline1* libprocps0* librtmp0* libsasl2-2* libssh2-1* libssl1.0.0* libtasn1-3* libunistring0* libxml2* libxmlrpc-core-c3* man-db* po-debconf* procps* sbuild-build-depends-core-dummy* sbuild-build-depends-seqan-dummy* zlib1g-dev* 0 upgraded, 0 newly installed, 52 to remove and 0 not upgraded. After this operation, 141 MB disk space will be freed. (Reading database ... 23128 files and directories currently installed.) Removing sbuild-build-depends-seqan-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing cdbs ... Removing cmake ... Removing cmake-data ... Purging configuration files for cmake-data ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libarchive12:armhf ... Purging configuration files for libarchive12:armhf ... Removing libbam-dev ... Removing libboost-dev ... 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Purging configuration files for libgcrypt11:armhf ... Removing libgpg-error0:armhf ... Purging configuration files for libgpg-error0:armhf ... Removing libgssapi-krb5-2:armhf ... Purging configuration files for libgssapi-krb5-2:armhf ... Removing libidn11:armhf ... Purging configuration files for libidn11:armhf ... Removing libkrb5-3:armhf ... Purging configuration files for libkrb5-3:armhf ... Removing libk5crypto3:armhf ... Purging configuration files for libk5crypto3:armhf ... Removing libkeyutils1:armhf ... Purging configuration files for libkeyutils1:armhf ... Removing libkrb5support0:armhf ... Purging configuration files for libkrb5support0:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libnettle4:armhf ... Purging configuration files for libnettle4:armhf ... Removing libp11-kit0:armhf ... Purging configuration files for libp11-kit0:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing procps ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for procps ... Removing libprocps0:armhf ... Purging configuration files for libprocps0:armhf ... Removing libsasl2-2:armhf ... Purging configuration files for libsasl2-2:armhf ... Removing libssl1.0.0:armhf ... Purging configuration files for libssl1.0.0:armhf ... Removing libtasn1-3:armhf ... Purging configuration files for libtasn1-3:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 452424 Build-Time: 10874 Distribution: testing Install-Time: 110 Job: seqan_1.3.1-1 Package: seqan Package-Time: 11004 Source-Version: 1.3.1-1 Space: 452424 Status: successful Version: 1.3.1-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120505-0139 Build needed 03:03:24, 452424k disc space