sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build07.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ r-cran-haplo.stats 1.5.5-1 (armhf) 14 Aug 2012 09:47 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: r-cran-haplo.stats Version: 1.5.5-1 Source Version: 1.5.5-1 Distribution: wheezy-staging Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf W: line 7 [testing-armhf-sbuild]: Deprecated key ‘script-config’ used I: This option will be removed in the future; please update your configuration W: line 7 [wheezy-staging-armhf-sbuild]: Deprecated key ‘script-config’ used I: NOTICE: Log filtering will replace 'build/r-cran-haplo.stats-SGM3YU/r-cran-haplo.stats-1.5.5' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/r-cran-haplo.stats-SGM3YU' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/wheezy-staging-armhf-sbuild-9572731e-51cf-420b-a451-a71cddcae574' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://archive.raspbian.lan wheezy-staging InRelease Hit http://archive.raspbian.lan wheezy-staging/main Sources Hit http://archive.raspbian.lan wheezy-staging/main armhf Packages Ign http://archive.raspbian.lan wheezy-staging/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'r-cran-haplo.stats' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-haplo.stats/trunk/ Need to get 1095 kB of source archives. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-haplo.stats 1.5.5-1 (dsc) [1551 B] Get:2 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-haplo.stats 1.5.5-1 (tar) [1090 kB] Get:3 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-haplo.stats 1.5.5-1 (diff) [3181 B] Fetched 1095 kB in 0s (3250 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-KDakXS/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10701 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222) Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222) dpkg-deb: building package `sbuild-build-depends-r-cran-haplo.stats-dummy' in `/«BUILDDIR»/resolver-2TE4vB/apt_archive/sbuild-build-depends-r-cran-haplo.stats-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install r-cran-haplo.stats build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev sbuild-build-depends-r-cran-haplo.stats-dummy tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 79 newly installed, 0 to remove and 5 not upgraded. Need to get 0 B/55.2 MB of archives. After this operation, 112 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10701 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-5_armhf.deb) ... Selecting previously unselected package libexpat1:armhf. Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ... 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Unpacking x11-common (from .../x11-common_1%3a7.7+1_all.deb) ... Selecting previously unselected package libice6:armhf. Unpacking libice6:armhf (from .../libice6_2%3a1.0.8-2_armhf.deb) ... Selecting previously unselected package libjpeg8:armhf. Unpacking libjpeg8:armhf (from .../libjpeg8_8d-1_armhf.deb) ... Selecting previously unselected package libthai-data. Unpacking libthai-data (from .../libthai-data_0.1.18-1_all.deb) ... Selecting previously unselected package libthai0:armhf. Unpacking libthai0:armhf (from .../libthai0_0.1.18-1_armhf.deb) ... Selecting previously unselected package libxft2:armhf. Unpacking libxft2:armhf (from .../libxft2_2.3.1-1_armhf.deb) ... Selecting previously unselected package fontconfig. Unpacking fontconfig (from .../fontconfig_2.9.0-7_armhf.deb) ... Selecting previously unselected package libpango1.0-0:armhf. Unpacking libpango1.0-0:armhf (from .../libpango1.0-0_1.30.0-1_armhf.deb) ... Selecting previously unselected package libpaper1:armhf. 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Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package gfortran-4.6. Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-8+rpi1_armhf.deb) ... Selecting previously unselected package gfortran. Unpacking gfortran (from .../gfortran_4%3a4.6.3-7_armhf.deb) ... Selecting previously unselected package libblas3. Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armhf.deb) ... Selecting previously unselected package libblas-dev. Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_armhf.deb) ... Selecting previously unselected package libbz2-dev:armhf. Unpacking libbz2-dev:armhf (from .../libbz2-dev_1.0.6-3_armhf.deb) ... Selecting previously unselected package libjpeg8-dev:armhf. Unpacking libjpeg8-dev:armhf (from .../libjpeg8-dev_8d-1_armhf.deb) ... 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Unpacking r-base-core (from .../r-base-core_2.15.1-4_armhf.deb) ... Selecting previously unselected package r-base-dev. Unpacking r-base-dev (from .../r-base-dev_2.15.1-4_all.deb) ... Selecting previously unselected package sbuild-build-depends-r-cran-haplo.stats-dummy. Unpacking sbuild-build-depends-r-cran-haplo.stats-dummy (from .../sbuild-build-depends-r-cran-haplo.stats-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-2) ... Setting up libxml2:armhf (2.8.0+dfsg1-5) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-7) ... Setting up libfontconfig1:armhf (2.9.0-7) ... Setting up libpixman-1-0:armhf (0.26.0-3) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:armhf (2:1.5.0-1) ... Setting up libxcb-render0:armhf (1.8.1-1) ... Setting up libxcb-shm0:armhf (1.8.1-1) ... Setting up libxrender1:armhf (1:0.9.7-1) ... Setting up libcairo2:armhf (1.12.2-2) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libgfortran3:armhf (4.7.1-2+rpi1) ... Setting up x11-common (1:7.7+1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libthai-data (0.1.18-1) ... Setting up libthai0:armhf (0.1.18-1) ... Setting up libxft2:armhf (2.3.1-1) ... Setting up fontconfig (2.9.0-7) ... Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.30.0-1) ... Setting up libpaper1:armhf (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:armhf (1:8.30-5) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libjbig0:armhf (2.0-2) ... Setting up libtiff4:armhf (3.9.6-7) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-9) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-9) ... Setting up cdbs (0.4.115) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up gfortran-4.6 (4.6.3-8+rpi1) ... Setting up gfortran (4:4.6.3-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode. Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode. Setting up libbz2-dev:armhf (1.0.6-3) ... Setting up libjpeg8-dev:armhf (8d-1) ... Setting up liblapack3 (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode. Setting up liblapack-dev (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode. Setting up libtinfo-dev:armhf (5.9-10) ... Setting up libncurses5-dev (5.9-10) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ... Setting up libpng12-dev (1.2.49-1) ... Setting up libreadline6-dev:armhf (6.2-8) ... Setting up libreadline-dev:armhf (6.2-8) ... Setting up zip (3.0-6) ... Setting up unzip (6.0-7) ... Setting up xdg-utils (1.1.0~rc1+git20111210-6) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up r-base-core (2.15.1-4) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up r-base-dev (2.15.1-4) ... Setting up sbuild-build-depends-r-cran-haplo.stats-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-8+rpi1 gcc-4.6_4.6.3-8+rpi1 libc6-dev_2.13-33 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 cdbs_0.4.115 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-8+rpi1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 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libgcc1_1:4.7.1-2+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-2+rpi1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-2+rpi1 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1-5 liblapack3_3.4.1-5 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-2 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-3 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-7 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-5 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12+rpi1 perl-base_5.14.2-12+rpi1 perl-modules_5.14.2-12+rpi1 po-debconf_1.0.16+nmu2 r-base-core_2.15.1-4 r-base-dev_2.15.1-4 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-haplo.stats-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 unzip_6.0-7 util-linux_2.20.1-5.1 x11-common_1:7.7+1 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20120614-1 zip_3.0-6 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Tue Feb 28 09:57:48 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-cran-haplo.stats_1.5.5-1.dsc dpkg-source: info: extracting r-cran-haplo.stats in r-cran-haplo.stats-1.5.5 dpkg-source: info: unpacking r-cran-haplo.stats_1.5.5.orig.tar.gz dpkg-source: info: unpacking r-cran-haplo.stats_1.5.5-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_ALIAS_NAME=chroot:wheezy-staging-armhf-sbuild SCHROOT_CHROOT_NAME=wheezy-staging-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=wheezy-staging-armhf-sbuild-9572731e-51cf-420b-a451-a71cddcae574 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package r-cran-haplo.stats dpkg-buildpackage: source version 1.5.5-1 dpkg-source --before-build r-cran-haplo.stats-1.5.5 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch test -x debian/rules mkdir -p "." fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 2.15.1-4)" >> debian/r-cran-haplo.stats.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'haplo.stats' ... ** package 'haplo.stats' successfully unpacked and MD5 sums checked ** libs make[1]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c groupsum.c -o groupsum.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c haplo_em_pin.c -o haplo_em_pin.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c louis_info.c -o louis_info.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c seqhap.c -o seqhap.o gcc -std=gnu99 -shared -o haplo.stats.so groupsum.o haplo_em_pin.o louis_info.o seqhap.o -L/usr/lib/R/lib -lR make[1]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Entering directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»/src' installing to /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/lib/R/site-library/haplo.stats/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'hapPower.demo' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'hla.demo' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'seqhap.dat' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'seqhap.pos' not found ** installing vignettes ** testing if installed package can be loaded * DONE (haplo.stats) rm -vf /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/lib/R/site-library/R.css \ /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/lib/R/site-library/haplo.stats/COPYING \ /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/lib/R/site-library/haplo.stats/LICENSE.txt if test -f debian/overrides; then \ install -d /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /«PKGBUILDDIR»/debian/r-cran-haplo.stats/usr/share/lintian/overrides/r-cran-haplo.stats; \ fi Adding cdbs dependencies to debian/r-cran-haplo.stats.substvars dh_installdirs -pr-cran-haplo.stats dh_installdocs -pr-cran-haplo.stats dh_installexamples -pr-cran-haplo.stats dh_installman -pr-cran-haplo.stats dh_installinfo -pr-cran-haplo.stats dh_installmenu -pr-cran-haplo.stats dh_installcron -pr-cran-haplo.stats dh_installinit -pr-cran-haplo.stats dh_installdebconf -pr-cran-haplo.stats dh_installemacsen -pr-cran-haplo.stats dh_installcatalogs -pr-cran-haplo.stats dh_installpam -pr-cran-haplo.stats dh_installlogrotate -pr-cran-haplo.stats dh_installlogcheck -pr-cran-haplo.stats dh_installchangelogs -pr-cran-haplo.stats dh_installudev -pr-cran-haplo.stats dh_lintian -pr-cran-haplo.stats dh_bugfiles -pr-cran-haplo.stats dh_install -pr-cran-haplo.stats dh_link -pr-cran-haplo.stats dh_installmime -pr-cran-haplo.stats dh_installgsettings -pr-cran-haplo.stats dh_strip -pr-cran-haplo.stats dh_compress -pr-cran-haplo.stats -X .pdf dh_fixperms -pr-cran-haplo.stats dh_makeshlibs -pr-cran-haplo.stats dh_installdeb -pr-cran-haplo.stats dh_perl -pr-cran-haplo.stats dh_shlibdeps -pr-cran-haplo.stats dh_gencontrol -pr-cran-haplo.stats dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -pr-cran-haplo.stats dh_builddeb -pr-cran-haplo.stats dpkg-deb: building package `r-cran-haplo.stats' in `../r-cran-haplo.stats_1.5.5-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../r-cran-haplo.stats_1.5.5-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build r-cran-haplo.stats-1.5.5 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120814-0951 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ r-cran-haplo.stats_1.5.5-1_armhf.changes: ───────────────────────────────────────── Format: 1.8 Date: Tue, 28 Feb 2012 09:28:22 +0100 Source: r-cran-haplo.stats Binary: r-cran-haplo.stats Architecture: armhf Version: 1.5.5-1 Distribution: wheezy-staging Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: r-cran-haplo.stats - GNU R package for haplotype analysis Changes: r-cran-haplo.stats (1.5.5-1) unstable; urgency=low . * New upstream version * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) which is supporting R:Depends substitution variable * debian/rules: Remove R:Depends substitution variable which isn now included in /usr/share/R/debian/r-cran.mk * debian/copyright: Fixed DEP5 issues using cme fix dpkg-copyright * debian/docs -> debian/links: Symlink to Manual rather than copying it * debian/doc_source: Removed because now part of upstream source Checksums-Sha1: b39fb2272daa73826a41684bc5a2b28b96bbeb93 558930 r-cran-haplo.stats_1.5.5-1_armhf.deb Checksums-Sha256: 6b5ced3f4cdeebc99ba0d1da579bd7a469678e353c6d3b8ab6c49d20b231e6b9 558930 r-cran-haplo.stats_1.5.5-1_armhf.deb Files: 60e497e2d5741e9f729fafbd6559fed7 558930 gnu-r optional r-cran-haplo.stats_1.5.5-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-cran-haplo.stats_1.5.5-1_armhf.deb ──────────────────────────────────── new debian package, version 2.0. size 558930 bytes: control archive=1717 bytes. 798 bytes, 16 lines control 2865 bytes, 34 lines md5sums Package: r-cran-haplo.stats Version: 1.5.5-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 682 Depends: libc6 (>= 2.13-28), r-base-core (>= 2.15.1-4) Section: gnu-r Priority: optional Homepage: http://cran.r-project.org/web/packages/haplo.stats Description: GNU R package for haplotype analysis The package provides routines for the GNU R statistics environment for statistical Analysis of indirectly measured Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em, haplo.glm, haplo.score, haplo.power, and seqhap. drwxr-xr-x root/root 0 2012-08-14 09:51 ./ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/share/ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 82 2012-02-10 07:14 ./usr/share/lintian/overrides/r-cran-haplo.stats drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/share/doc/r-cran-haplo.stats/ -rw-r--r-- root/root 1096 2012-02-28 01:37 ./usr/share/doc/r-cran-haplo.stats/changelog.Debian.gz -rw-r--r-- root/root 1407 2012-02-28 00:29 ./usr/share/doc/r-cran-haplo.stats/copyright -rw-r--r-- root/root 290 2012-02-10 14:41 ./usr/share/doc/r-cran-haplo.stats/README.Debian drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/share/doc-base/ -rw-r--r-- root/root 586 2012-02-10 14:33 ./usr/share/doc-base/r-cran-haplo.stats drwxr-xr-x root/root 0 2012-08-14 09:50 ./usr/lib/ drwxr-xr-x root/root 0 2012-08-14 09:50 ./usr/lib/R/ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/ drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/html/ -rw-r--r-- root/root 1179 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/html/R.css -rw-r--r-- root/root 13515 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/html/00Index.html drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/libs/ -rw-r--r-- root/root 30292 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/libs/haplo.stats.so drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/data/ -rw-r--r-- root/root 255 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/data/hapPower.demo.tab.gz -rw-r--r-- root/root 108 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/data/seqhap.pos.tab.gz -rw-r--r-- root/root 6048 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/data/seqhap.dat.tab.gz -rw-r--r-- root/root 4723 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/data/hla.demo.tab.gz -rw-r--r-- root/root 1024 2012-08-14 09:50 ./usr/lib/R/site-library/haplo.stats/LICENSE drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/doc/ -rw-r--r-- root/root 15145 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/doc/GPL.txt -rw-r--r-- root/root 652 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/doc/index.html -rw-r--r-- root/root 288269 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/doc/manualHaploStats.pdf drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/help/ -rw-r--r-- root/root 152049 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/help/haplo.stats.rdb -rw-r--r-- root/root 2325 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/help/AnIndex -rw-r--r-- root/root 722 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/help/aliases.rds -rw-r--r-- root/root 547 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/help/paths.rds -rw-r--r-- root/root 1323 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/help/haplo.stats.rdx -rw-r--r-- root/root 14496 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/NEWS.Rd -rw-r--r-- root/root 997 2012-08-14 09:50 ./usr/lib/R/site-library/haplo.stats/DESCRIPTION -rw-r--r-- root/root 4985 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/INDEX drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/R/ -rw-r--r-- root/root 383 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/R/haplo.stats -rw-r--r-- root/root 62748 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/R/haplo.stats.rdb -rw-r--r-- root/root 1283 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/R/haplo.stats.rdx -rw-r--r-- root/root 1508 2012-08-14 09:50 ./usr/lib/R/site-library/haplo.stats/NAMESPACE drwxr-xr-x root/root 0 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/Meta/ -rw-r--r-- root/root 610 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/Meta/nsInfo.rds -rw-r--r-- root/root 61 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/Meta/data.rds -rw-r--r-- root/root 960 2012-08-14 09:50 ./usr/lib/R/site-library/haplo.stats/Meta/package.rds -rw-r--r-- root/root 2597 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/Meta/Rd.rds -rw-r--r-- root/root 991 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/Meta/links.rds -rw-r--r-- root/root 2419 2012-08-14 09:51 ./usr/lib/R/site-library/haplo.stats/Meta/hsearch.rds lrwxrwxrwx root/root 0 2012-08-14 09:51 ./usr/share/doc/r-cran-haplo.stats/manualHaploStats.pdf -> ../../../lib/R/site-library/haplo.stats/doc/manualHaploStats.pdf ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* cdbs* debhelper* file* fontconfig* fontconfig-config* gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text* intltool-debian* libasprintf0c2* libblas-dev* libblas3* libbz2-dev* libcairo2* libcroco3* libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgettextpo0* libgfortran3* libglib2.0-0* libice6* libjbig0* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev* sbuild-build-depends-core-dummy* sbuild-build-depends-r-cran-haplo.stats-dummy* tcl8.5* tk8.5* ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev* 0 upgraded, 0 newly installed, 80 to remove and 5 not upgraded. After this operation, 112 MB disk space will be freed. (Reading database ... 14929 files and directories currently installed.) Removing sbuild-build-depends-r-cran-haplo.stats-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing r-base-dev ... Removing cdbs ... Removing file ... Removing r-base-core ... Purging configuration files for r-base-core ... Removing libpango1.0-0:armhf ... Purging configuration files for libpango1.0-0:armhf ... Removing fontconfig ... Purging configuration files for fontconfig ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing libxft2:armhf ... Purging configuration files for libxft2:armhf ... Removing libcairo2:armhf ... Purging configuration files for libcairo2:armhf ... Removing libfontconfig1:armhf ... Purging configuration files for libfontconfig1:armhf ... Removing fontconfig-config ... 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Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 7772 Build-Time: 89 Distribution: wheezy-staging Host Architecture: armhf Install-Time: 149 Job: r-cran-haplo.stats_1.5.5-1 Machine Architecture: armhf Package: r-cran-haplo.stats Package-Time: 258 Source-Version: 1.5.5-1 Space: 7772 Status: successful Version: 1.5.5-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120814-0951 Build needed 00:04:18, 7772k disc space