sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build02.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ r-cran-genabel 1.7-0-3 (armhf) 03 Feb 2013 04:28 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: r-cran-genabel Version: 1.7-0-3 Source Version: 1.7-0-3 Distribution: wheezy-staging Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-cran-genabel-PtoqMt/r-cran-genabel-1.7-0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/r-cran-genabel-PtoqMt' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/wheezy-staging-armhf-sbuild-f8f28732-e5c5-4989-8b8b-726ef9fa6510' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://archive.raspbian.lan wheezy-staging InRelease [9334 B] Get:2 http://archive.raspbian.lan wheezy-staging/main Sources [6235 kB] Get:3 http://archive.raspbian.lan wheezy-staging/main armhf Packages [7402 kB] Ign http://archive.raspbian.lan wheezy-staging/main Translation-en Fetched 13.6 MB in 43s (313 kB/s) Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'r-cran-genabel' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-genabel/trunk/ Need to get 3881 kB of source archives. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-genabel 1.7-0-3 (dsc) [1531 B] Get:2 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-genabel 1.7-0-3 (tar) [3876 kB] Get:3 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-genabel 1.7-0-3 (diff) [3649 B] Fetched 3881 kB in 1s (3619 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-K34pJ4/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10763 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10), r-cran-mass, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10), r-cran-mass, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue dpkg-deb: building package `sbuild-build-depends-r-cran-genabel-dummy' in `/«BUILDDIR»/resolver-mHNPK3/apt_archive/sbuild-build-depends-r-cran-genabel-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install r-cran-genabel build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs cpp-4.6 debhelper file fontconfig fontconfig-config g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcc1 libgettextpo0 libgfortran3 libglib2.0-0 libgomp1 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-combinat r-cran-foreign r-cran-gdata r-cran-genetics r-cran-gtools r-cran-haplo.stats r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mvtnorm r-cran-nlme r-cran-nnet r-cran-qvalue r-cran-rpart r-cran-spatial r-cran-survival r-recommended tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg binutils-gold gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-combinat r-cran-foreign r-cran-gdata r-cran-genetics r-cran-gtools r-cran-haplo.stats r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mvtnorm r-cran-nlme r-cran-nnet r-cran-qvalue r-cran-rpart r-cran-spatial r-cran-survival r-recommended sbuild-build-depends-r-cran-genabel-dummy tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev The following packages will be upgraded: cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.7-base libgcc1 libgomp1 libstdc++6 libstdc++6-4.6-dev 9 upgraded, 102 newly installed, 0 to remove and 27 not upgraded. Need to get 55.1 MB/83.6 MB of archives. After this operation, 131 MB of additional disk space will be used. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main libgomp1 armhf 4.7.2-5+rpi1 [28.3 kB] Get:2 http://archive.raspbian.lan/raspbian/ wheezy-staging/main gcc-4.7-base armhf 4.7.2-5+rpi1 [144 kB] Get:3 http://archive.raspbian.lan/raspbian/ wheezy-staging/main libstdc++6 armhf 4.7.2-5+rpi1 [291 kB] Get:4 http://archive.raspbian.lan/raspbian/ wheezy-staging/main libgcc1 armhf 1:4.7.2-5+rpi1 [54.4 kB] Get:5 http://archive.raspbian.lan/raspbian/ wheezy-staging/main libgfortran3 armhf 4.7.2-5+rpi1 [237 kB] Get:6 http://archive.raspbian.lan/raspbian/ wheezy-staging/main g++-4.6 armhf 4.6.3-14+rpi1 [5171 kB] Get:7 http://archive.raspbian.lan/raspbian/ wheezy-staging/main libstdc++6-4.6-dev armhf 4.6.3-14+rpi1 [1695 kB] Get:8 http://archive.raspbian.lan/raspbian/ wheezy-staging/main gcc-4.6 armhf 4.6.3-14+rpi1 [4471 kB] Get:9 http://archive.raspbian.lan/raspbian/ wheezy-staging/main cpp-4.6 armhf 4.6.3-14+rpi1 [4252 kB] Get:10 http://archive.raspbian.lan/raspbian/ wheezy-staging/main gcc-4.6-base armhf 4.6.3-14+rpi1 [141 kB] Get:11 http://archive.raspbian.lan/raspbian/ wheezy-staging/main gfortran-4.6 armhf 4.6.3-14+rpi1 [4833 kB] Get:12 http://archive.raspbian.lan/raspbian/ wheezy-staging/main unzip armhf 6.0-8 [193 kB] Get:13 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-base-core armhf 2.15.1-4 [20.5 MB] Get:14 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-base-dev all 2.15.1-4 [3882 B] Get:15 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-boot all 1.3-5-1 [472 kB] Get:16 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-mass armhf 7.3-19-1 [838 kB] Get:17 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-class armhf 7.3-4-1 [69.2 kB] Get:18 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-cluster armhf 1.14.2-1 [391 kB] Get:19 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-codetools all 0.2-8-1 [43.4 kB] Get:20 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-combinat all 0.0-8-3 [29.0 kB] Get:21 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-foreign armhf 0.8.50-1 [170 kB] Get:22 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-gtools armhf 2.7.0-1 [105 kB] Get:23 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-gdata all 2.11.0-1 [764 kB] Get:24 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-kernsmooth armhf 2.23-8-1 [61.4 kB] Get:25 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-lattice armhf 0.20-6-1 [712 kB] Get:26 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-nlme armhf 3.1.104-1 [1551 kB] Get:27 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-matrix armhf 1.0-6-1 [3041 kB] Get:28 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-mgcv armhf 1.7-13-1 [1289 kB] Get:29 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-survival armhf 2.36-14-1 [1441 kB] Get:30 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-rpart armhf 3.1.54-1 [169 kB] Get:31 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-nnet armhf 7.3-4-1 [65.1 kB] Get:32 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-spatial armhf 7.3-4-1 [104 kB] Get:33 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-recommended all 2.15.1-4 [2678 B] Get:34 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-mvtnorm armhf 0.9-9992-1 [363 kB] Get:35 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-genetics all 1.3.6-2 [279 kB] Get:36 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-haplo.stats armhf 1.5.5-1 [559 kB] Get:37 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-qvalue all 1.26.0-1 [585 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.1 MB in 15s (3493 kB/s) (Reading database ... 10763 files and directories currently installed.) Preparing to replace libgomp1:armhf 4.7.2-4+rpi1 (using .../libgomp1_4.7.2-5+rpi1_armhf.deb) ... Unpacking replacement libgomp1:armhf ... Preparing to replace gcc-4.7-base:armhf 4.7.2-4+rpi1 (using .../gcc-4.7-base_4.7.2-5+rpi1_armhf.deb) ... Unpacking replacement gcc-4.7-base:armhf ... Setting up gcc-4.7-base:armhf (4.7.2-5+rpi1) ... (Reading database ... 10763 files and directories currently installed.) Preparing to replace libstdc++6:armhf 4.7.2-4+rpi1 (using .../libstdc++6_4.7.2-5+rpi1_armhf.deb) ... Unpacking replacement libstdc++6:armhf ... Setting up libstdc++6:armhf (4.7.2-5+rpi1) ... (Reading database ... 10763 files and directories currently installed.) Preparing to replace libgcc1:armhf 1:4.7.2-4+rpi1 (using .../libgcc1_1%3a4.7.2-5+rpi1_armhf.deb) ... Unpacking replacement libgcc1:armhf ... Setting up libgcc1:armhf (1:4.7.2-5+rpi1) ... Selecting previously unselected package libpcre3:armhf. (Reading database ... 10763 files and directories currently installed.) 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Unpacking sbuild-build-depends-r-cran-genabel-dummy (from .../sbuild-build-depends-r-cran-genabel-dummy.deb) ... Setting up libgomp1:armhf (4.7.2-5+rpi1) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-2) ... Setting up libxml2:armhf (2.8.0+dfsg1-7) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1.1) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:armhf (2.9.0-7.1) ... Setting up libpixman-1-0:armhf (0.26.0-3) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-2) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:armhf (2:1.5.0-1) ... Setting up libxcb-render0:armhf (1.8.1-2) ... Setting up libxcb-shm0:armhf (1.8.1-2) ... Setting up libxrender1:armhf (1:0.9.7-1) ... Setting up libcairo2:armhf (1.12.2-2) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.33.12+really2.32.4-3) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.6-2) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libgfortran3:armhf (4.7.2-5+rpi1) ... Setting up x11-common (1:7.7+1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libthai-data (0.1.18-2) ... Setting up libthai0:armhf (0.1.18-2) ... Setting up libxft2:armhf (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.30.0-1) ... Setting up libpaper1:armhf (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:armhf (1:8.30-5) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libjbig0:armhf (2.0-2) ... Setting up libtiff4:armhf (3.9.6-11) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up groff-base (1.21-9) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up gcc-4.6-base:armhf (4.6.3-14+rpi1) ... Setting up cpp-4.6 (4.6.3-14+rpi1) ... Setting up gcc-4.6 (4.6.3-14+rpi1) ... Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-9) ... Setting up cdbs (0.4.115+deb7u1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120909) ... Setting up gfortran-4.6 (4.6.3-14+rpi1) ... Setting up gfortran (4:4.6.3-8) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:armhf (1.0.6-4) ... Setting up libjpeg8-dev:armhf (8d-1) ... Setting up liblapack3 (3.4.1-6) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.4.1-6) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:armhf (5.9-10) ... Setting up libncurses5-dev (5.9-10) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ... Setting up libpng12-dev (1.2.49-1) ... Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ... Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ... Setting up zip (3.0-6) ... Setting up unzip (6.0-8) ... Setting up xdg-utils (1.1.0~rc1+git20111210-6) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode Setting up r-base-core (2.15.1-4) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up r-base-dev (2.15.1-4) ... Setting up r-cran-boot (1.3-5-1) ... Setting up r-cran-mass (7.3-19-1) ... Setting up r-cran-class (7.3-4-1) ... Setting up r-cran-cluster (1.14.2-1) ... Setting up r-cran-codetools (0.2-8-1) ... Setting up r-cran-combinat (0.0-8-3) ... Setting up r-cran-foreign (0.8.50-1) ... Setting up r-cran-gtools (2.7.0-1) ... Setting up r-cran-gdata (2.11.0-1) ... Setting up r-cran-kernsmooth (2.23-8-1) ... Setting up r-cran-lattice (0.20-6-1) ... Setting up r-cran-nlme (3.1.104-1) ... Setting up r-cran-matrix (1.0-6-1) ... Setting up r-cran-mgcv (1.7-13-1) ... Setting up r-cran-survival (2.36-14-1) ... Setting up r-cran-rpart (3.1.54-1) ... Setting up r-cran-nnet (7.3-4-1) ... Setting up r-cran-spatial (7.3-4-1) ... Setting up r-recommended (2.15.1-4) ... Setting up r-cran-mvtnorm (0.9-9992-1) ... Setting up r-cran-genetics (1.3.6-2) ... Setting up r-cran-haplo.stats (1.5.5-1) ... Setting up r-cran-qvalue (1.26.0-1) ... Setting up sbuild-build-depends-r-cran-genabel-dummy (0.invalid.0) ... Setting up libstdc++6-4.6-dev (4.6.3-14+rpi1) ... Setting up g++-4.6 (4.6.3-14+rpi1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.3-14+rpi1 gcc-4.6_4.6.3-14+rpi1 libc6-dev_2.13-37+rpi1 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.11 base-passwd_3.5.26 bash_4.2-4 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.2 build-essential_11.5+b1 bzip2_1.0.6-4 cdbs_0.4.115+deb7u1 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.3-14+rpi1 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.9 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 eatmydata_26-2 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 g++_4:4.6.3-7 g++-4.6_4.6.3-14+rpi1 gcc_4:4.6.3-8 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-14+rpi1 gcc-4.6-base_4.6.3-14+rpi1 gcc-4.7-base_4.7.2-5+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gfortran_4:4.6.3-8 gfortran-4.6_4.6.3-14+rpi1 gnupg_1.4.12-6 gpgv_1.4.12-6 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-32 insserv_1.14.0-4 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.3+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-37+rpi1 libc-dev-bin_2.13-37+rpi1 libc6_2.13-37+rpi1 libc6-dev_2.13-37+rpi1 libcairo2_1.12.2-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.5-1 libcroco3_0.6.6-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.9 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9 libgcc1_1:4.7.2-5+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.2-5+rpi1 libglib2.0-0_2.33.12+really2.32.4-3 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5+rpi1 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1-6 liblapack3_3.4.1-6 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_5.11-2 libmount1_2.20.1-5.2 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-3 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-2 libthai0_0.1.18-2 libtiff4_3.9.6-11 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.2 multiarch-support_2.13-35 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-16+rpi1 perl-base_5.14.2-16+rpi1 perl-modules_5.14.2-16+rpi1 po-debconf_1.0.16+nmu2 r-base-core_2.15.1-4 r-base-dev_2.15.1-4 r-cran-boot_1.3-5-1 r-cran-class_7.3-4-1 r-cran-cluster_1.14.2-1 r-cran-codetools_0.2-8-1 r-cran-combinat_0.0-8-3 r-cran-foreign_0.8.50-1 r-cran-gdata_2.11.0-1 r-cran-genetics_1.3.6-2 r-cran-gtools_2.7.0-1 r-cran-haplo.stats_1.5.5-1 r-cran-kernsmooth_2.23-8-1 r-cran-lattice_0.20-6-1 r-cran-mass_7.3-19-1 r-cran-matrix_1.0-6-1 r-cran-mgcv_1.7-13-1 r-cran-mvtnorm_0.9-9992-1 r-cran-nlme_3.1.104-1 r-cran-nnet_7.3-4-1 r-cran-qvalue_1.26.0-1 r-cran-rpart_3.1.54-1 r-cran-spatial_7.3-4-1 r-cran-survival_2.36-14-1 r-recommended_2.15.1-4 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-genabel-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-32 sysvinit_2.88dsf-32 sysvinit-utils_2.88dsf-32 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-3 tzdata_2012j-1 ucf_3.0025+nmu3 unzip_6.0-8 util-linux_2.20.1-5.2 x11-common_1:7.7+1 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20120614-1 zip_3.0-6 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sat Feb 2 07:11:49 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-cran-genabel_1.7-0-3.dsc dpkg-source: info: extracting r-cran-genabel in r-cran-genabel-1.7-0 dpkg-source: info: unpacking r-cran-genabel_1.7-0.orig.tar.gz dpkg-source: info: unpacking r-cran-genabel_1.7-0-3.debian.tar.gz dpkg-source: info: applying checkversion.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LD_PRELOAD=/usr/lib/libeatmydata/libeatmydata.so LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games PWD=/«PKGBUILDDIR» SCHROOT_ALIAS_NAME=chroot:wheezy-staging-armhf-sbuild SCHROOT_CHROOT_NAME=wheezy-staging-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=wheezy-staging-armhf-sbuild-f8f28732-e5c5-4989-8b8b-726ef9fa6510 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package r-cran-genabel dpkg-buildpackage: source version 1.7-0-3 dpkg-source --before-build r-cran-genabel-1.7-0 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch test -x debian/rules mkdir -p "." fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 2.15.1-4)" >> debian/r-cran-genabel.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-genabel/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-genabel/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'GenABEL' ... file 'R/checkPackageVersionOnCRAN.R' has the wrong MD5 checksum ** libs make[1]: Entering directory `/«PKGBUILDDIR»/src' g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c AbstractMatrix.cpp -o AbstractMatrix.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c AbstractMatrix_R.cpp -o AbstractMatrix_R.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c CastUtils.cpp -o CastUtils.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c Chip.cpp -o Chip.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c FileVector.cpp -o FileVector.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c FilteredMatrix.cpp -o FilteredMatrix.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c FilteredMatrix_R.cpp -o FilteredMatrix_R.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c Logger.cpp -o Logger.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c RealHandlerWrapper.cpp -o RealHandlerWrapper.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c ReusableFileHandle.cpp -o ReusableFileHandle.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c Transposer.cpp -o Transposer.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c chinv2.cpp -o chinv2.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c cholesky2.cpp -o cholesky2.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c chsolve2.cpp -o chsolve2.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert.snp.affymetrix.cpp -o convert.snp.affymetrix.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_illumina.cpp -o convert_snp_illumina.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_merlin.cpp -o convert_snp_merlin.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_merlin_wslash.cpp -o convert_snp_merlin_wslash.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_tped.cpp -o convert_snp_tped.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_util.cpp -o convert_util.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c coxfit2.cpp -o coxfit2.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c dautil.cpp -o dautil.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c dmatrix.cpp -o dmatrix.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c dometa.cpp -o dometa.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c export_plink.cpp -o export_plink.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c fexact.c -o fexact.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c frutil.cpp -o frutil.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gtps_container.cpp -o gtps_container.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c gwaa.c -o gwaa.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gwaa_cpp.cpp -o gwaa_cpp.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gwaa_data.cpp -o gwaa_data.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gwaautil.cpp -o gwaautil.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c interactions_rare_recesive_alleles.cpp -o interactions_rare_recesive_alleles.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c iterator.cpp -o iterator.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c iterator_functions.cpp -o iterator_functions.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c lm_gwaa.cpp -o lm_gwaa.o g++ -I/usr/share/R/include -DNDEBUG -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c merge.snp.data.cpp -o merge.snp.data.o g++ -shared -o GenABEL.so AbstractMatrix.o AbstractMatrix_R.o CastUtils.o Chip.o FileVector.o FilteredMatrix.o FilteredMatrix_R.o Logger.o RealHandlerWrapper.o ReusableFileHandle.o Transposer.o chinv2.o cholesky2.o chsolve2.o convert.snp.affymetrix.o convert_snp_illumina.o convert_snp_merlin.o convert_snp_merlin_wslash.o convert_snp_tped.o convert_util.o coxfit2.o dautil.o dmatrix.o dometa.o export_plink.o fexact.o frutil.o gtps_container.o gwaa.o gwaa_cpp.o gwaa_data.o gwaautil.o interactions_rare_recesive_alleles.o iterator.o iterator_functions.o lm_gwaa.o merge.snp.data.o -L/usr/lib/R/lib -lR make[1]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Entering directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»/src' installing to /«PKGBUILDDIR»/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/libs ** R ** data ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GenABEL) rm -vf /«PKGBUILDDIR»/debian/r-cran-genabel/usr/lib/R/site-library/R.css \ /«PKGBUILDDIR»/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/COPYING \ /«PKGBUILDDIR»/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/LICENSE.txt if test -f debian/overrides; then \ install -d /«PKGBUILDDIR»/debian/r-cran-genabel/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /«PKGBUILDDIR»/debian/r-cran-genabel/usr/share/lintian/overrides/r-cran-genabel; \ fi Adding cdbs dependencies to debian/r-cran-genabel.substvars dh_installdirs -pr-cran-genabel ## Require a number equal or superior than the R version the package was built with. echo "R:Depends=r-base-core (>= 2.15.1~)" >> debian/r-cran-genabel.substvars find debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/ -type f -exec chmod 644 \{\} \; dh_installdocs -pr-cran-genabel ./TODO dh_installexamples -pr-cran-genabel dh_installman -pr-cran-genabel dh_installinfo -pr-cran-genabel dh_installmenu -pr-cran-genabel dh_installcron -pr-cran-genabel dh_installinit -pr-cran-genabel dh_installdebconf -pr-cran-genabel dh_installemacsen -pr-cran-genabel dh_installcatalogs -pr-cran-genabel dh_installpam -pr-cran-genabel dh_installlogrotate -pr-cran-genabel dh_installlogcheck -pr-cran-genabel dh_installchangelogs -pr-cran-genabel CHANGES.LOG dh_installudev -pr-cran-genabel dh_lintian -pr-cran-genabel dh_bugfiles -pr-cran-genabel dh_install -pr-cran-genabel dh_link -pr-cran-genabel dh_installmime -pr-cran-genabel dh_installgsettings -pr-cran-genabel dh_strip -pr-cran-genabel dh_compress -pr-cran-genabel dh_fixperms -pr-cran-genabel dh_makeshlibs -pr-cran-genabel dh_installdeb -pr-cran-genabel dh_perl -pr-cran-genabel dh_shlibdeps -pr-cran-genabel dh_gencontrol -pr-cran-genabel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -pr-cran-genabel dh_builddeb -pr-cran-genabel dpkg-deb: building package `r-cran-genabel' in `../r-cran-genabel_1.7-0-3_armhf.deb'. dpkg-genchanges -B -mbuildd >../r-cran-genabel_1.7-0-3_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build r-cran-genabel-1.7-0 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20130203-0442 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ r-cran-genabel_1.7-0-3_armhf.changes: ───────────────────────────────────── Format: 1.8 Date: Sat, 02 Feb 2013 07:08:19 +0000 Source: r-cran-genabel Binary: r-cran-genabel Architecture: armhf Version: 1.7-0-3 Distribution: wheezy-staging Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: r-cran-genabel - GNU R package for genome-wide SNP association analysis Changes: r-cran-genabel (1.7-0-3) testing-proposed-updates; urgency=low . * Upload to testing-proposed-updates Checksums-Sha1: c845b019e8dd2f7e6f205fada088203344b6e2e6 4317312 r-cran-genabel_1.7-0-3_armhf.deb Checksums-Sha256: ac7a3d6ec404876907a15d843d79ae813a27c7b4d1b92655dd6a29063cb15f98 4317312 r-cran-genabel_1.7-0-3_armhf.deb Files: fa6523683da79366c419c3a633b3c271 4317312 gnu-r optional r-cran-genabel_1.7-0-3_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-cran-genabel_1.7-0-3_armhf.deb ──────────────────────────────── new debian package, version 2.0. size 4317312 bytes: control archive=2910 bytes. 1264 bytes, 26 lines control 5667 bytes, 67 lines md5sums Package: r-cran-genabel Version: 1.7-0-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 9513 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), r-base-core (>= 2.15.1~), r-cran-mass Suggests: r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue Conflicts: r-other-genabel Replaces: r-other-genabel Provides: r-other-genabel Section: gnu-r Priority: optional Homepage: http://www.genabel.org/ Description: GNU R package for genome-wide SNP association analysis The package offers the R library GenABEL for the hunt of genetic contributions to a disease (or any other pheonypical trait) by so called genome-wide association analysis. Additional input commonly comes from DNA mircoarray experiments, performed on every individual, that determine differences (polymorphisms) in the population. GenABEL finds associations between quantitative or binary traits and single-nucleiotide polymorphisms (SNPs). . When publishing work based to which this package has contributed please cite: Yurii S. Aulchenko, Stephan Ripke, Aaron Isaacs, Cornelia M. van Duijn (2007) "GenABEL: an R library for genome-wide association analysis" Bioinformatics 2007 23(10):1294-1296. drwxr-xr-x root/root 0 2013-02-03 04:40 ./ drwxr-xr-x root/root 0 2013-02-03 04:40 ./usr/ drwxr-xr-x root/root 0 2013-02-03 04:32 ./usr/lib/ drwxr-xr-x root/root 0 2013-02-03 04:32 ./usr/lib/R/ drwxr-xr-x root/root 0 2013-02-03 04:40 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2013-02-03 04:40 ./usr/lib/R/site-library/GenABEL/ -rw-r--r-- root/root 8736 2013-02-03 04:40 ./usr/lib/R/site-library/GenABEL/INDEX drwxr-xr-x root/root 0 2013-02-03 04:40 ./usr/lib/R/site-library/GenABEL/R/ -rw-r--r-- root/root 263322 2013-02-03 04:40 ./usr/lib/R/site-library/GenABEL/R/GenABEL.rdb -rw-r--r-- root/root 4023 2013-02-03 04:40 ./usr/lib/R/site-library/GenABEL/R/GenABEL.rdx -rw-r--r-- root/root 383 2013-02-03 04:40 ./usr/lib/R/site-library/GenABEL/R/GenABEL -rw-r--r-- root/root 706 2013-02-03 04:32 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