sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build02.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ qiime 1.4.0-2 (armhf) 24 May 2012 11:42 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: qiime Version: 1.4.0-2 Source Version: 1.4.0-2 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/qiime-_23bl8/qiime-1.4.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/qiime-_23bl8' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-a06e198e-0b11-4f02-83ac-e6040b196399' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'qiime' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/qiime/trunk/ Need to get 8889 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main qiime 1.4.0-2 (dsc) [1520 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main qiime 1.4.0-2 (tar) [8875 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main qiime 1.4.0-2 (diff) [12.0 kB] Fetched 8889 kB in 0s (10.3 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-aNsgrz/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10675 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), python-all-dev (>= 2.6), python-cogent (>= 1.5.1), python-numpy, python-matplotlib, ghc6, python-sphinx Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), python-all-dev (>= 2.6), python-cogent (>= 1.5.1), python-numpy, python-matplotlib, ghc6, python-sphinx dpkg-deb: building package `sbuild-build-depends-qiime-dummy' in `/«BUILDDIR»/resolver-om2Khi/apt_archive/sbuild-build-depends-qiime-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install qiime build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base ghc ghc6 gir1.2-glib-2.0 groff-base html2text intltool-debian libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libbsd-dev libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdb4.8 libdbus-1-3 libexpat1 libexpat1-dev libffi-dev libffi5 libfontconfig1 libfreetype6 libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libgirepository-1.0-1 libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls26 libgpg-error0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libjasper1 libjbig0 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3gf libmagic1 libp11-kit0 libpango1.0-0 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpython2.6 libpython2.7 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-all-dev python-cairo python-cogent python-dateutil python-dev python-docutils python-gi python-gobject python-gobject-2 python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-numpy python-pygments python-pyparsing python-roman python-sphinx python-support python-tz python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sgml-base shared-mime-info sphinx-common tcl8.5 tk8.5 ttf-dejavu-core x11-common xml-core zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc ghc-prof ghc-doc haskell-doc groff cups-common rng-tools libgmp10-doc libmpfr-dev krb5-doc krb5-user librsvg2-common gvfs libjasper-runtime ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended texlive-latex-base texlive-lang-french fonts-linuxlibertine ttf-linux-libertine python-gi-cairo python-gobject-2-dbg python-jinja2-doc dvipng ipython python-configobj python-excelerator python-gtk2 python-matplotlib-doc python-qt3 python-qt4 python-scipy python-traits python-wxgtk2.8 texlive-extra-utils texlive-latex-extra python-numpy-doc python-numpy-dbg python-nose gfortran ttf-bitstream-vera jsmath libjs-mathjax texlive-fonts-recommended python2.6-doc binfmt-support python2.7-doc sgml-base-doc tclreadline Recommended packages: curl wget lynx-cur autopoint dbus libglib2.0-data hicolor-icon-theme libgtk2.0-bin javascript-common krb5-locales libssl-doc libmail-sendmail-perl python-imaging libpaper-utils python-lxml docutils-doc python-pkg-resources python-glade2 python-chardet sphinx-doc xterm x-terminal-emulator The following NEW packages will be installed: bsdmainutils debhelper docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base ghc ghc6 gir1.2-glib-2.0 groff-base html2text intltool-debian libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libbsd-dev libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdb4.8 libdbus-1-3 libexpat1 libexpat1-dev libffi-dev libffi5 libfontconfig1 libfreetype6 libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libgirepository-1.0-1 libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls26 libgpg-error0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libjasper1 libjbig0 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3gf libmagic1 libp11-kit0 libpango1.0-0 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpython2.6 libpython2.7 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-all-dev python-cairo python-cogent python-dateutil python-dev python-docutils python-gi python-gobject python-gobject-2 python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-numpy python-pygments python-pyparsing python-roman python-sphinx python-support python-tz python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-qiime-dummy sgml-base shared-mime-info sphinx-common tcl8.5 tk8.5 ttf-dejavu-core x11-common xml-core zlib1g-dev 0 upgraded, 137 newly installed, 0 to remove and 22 not upgraded. Need to get 57.5 MB/146 MB of archives. After this operation, 485 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main shared-mime-info armhf 0.90-1.1 [1012 kB] Get:2 http://repo.raspbian.lan/raspbian/ testing/main fonts-lyx all 2.0.3-2 [167 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main ghc armhf 7.0.4-8 [47.4 MB] Get:4 http://repo.raspbian.lan/raspbian/ testing/main ghc6 all 7.0.4-8 [25.2 kB] Get:5 http://repo.raspbian.lan/raspbian/ testing/main python-matplotlib-data all 1.1.1~rc1-2 [2057 kB] Get:6 http://repo.raspbian.lan/raspbian/ testing/main python-numpy armhf 1:1.6.2~rc1-1 [2460 kB] Get:7 http://repo.raspbian.lan/raspbian/ testing/main python-matplotlib armhf 1.1.1~rc1-2 [2465 kB] Get:8 http://repo.raspbian.lan/raspbian/ testing/main python-cogent armhf 1.5.1-2 [1885 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.5 MB in 5s (10.3 MB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10675 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libssl1.0.0:armhf. Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1c-1_armhf.deb) ... Selecting previously unselected package libgpg-error0:armhf. Unpacking libgpg-error0:armhf (from .../libgpg-error0_1.10-3_armhf.deb) ... Selecting previously unselected package libgcrypt11:armhf. Unpacking libgcrypt11:armhf (from .../libgcrypt11_1.5.0-3_armhf.deb) ... Selecting previously unselected package libp11-kit0:armhf. Unpacking libp11-kit0:armhf (from .../libp11-kit0_0.12-3_armhf.deb) ... Selecting previously unselected package libtasn1-3:armhf. Unpacking libtasn1-3:armhf (from .../libtasn1-3_2.12-1_armhf.deb) ... Selecting previously unselected package libgnutls26:armhf. Unpacking libgnutls26:armhf (from .../libgnutls26_2.12.19-1_armhf.deb) ... 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Unpacking sbuild-build-depends-qiime-dummy (from .../sbuild-build-depends-qiime-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libssl1.0.0:armhf (1.0.1c-1) ... Setting up libgpg-error0:armhf (1.10-3) ... Setting up libgcrypt11:armhf (1.5.0-3) ... Setting up libp11-kit0:armhf (0.12-3) ... Setting up libtasn1-3:armhf (2.12-1) ... Setting up libgnutls26:armhf (2.12.19-1) ... Setting up libkeyutils1:armhf (1.5.5-2) ... Setting up libkrb5support0:armhf (1.10.1+dfsg-1) ... Setting up libk5crypto3:armhf (1.10.1+dfsg-1) ... Setting up libkrb5-3:armhf (1.10.1+dfsg-1) ... Setting up libgssapi-krb5-2:armhf (1.10.1+dfsg-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libsqlite3-0:armhf (3.7.11-3) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.2-1) ... No schema files found: doing nothing. Setting up libatk1.0-data (2.4.0-2) ... Setting up libatk1.0-0:armhf (2.4.0-2) ... Setting up libavahi-common-data:armhf (0.6.31-1) ... Setting up libavahi-common3:armhf (0.6.31-1) ... Setting up libdbus-1-3:armhf (1.5.12-1) ... Setting up libavahi-client3:armhf (0.6.31-1) ... Setting up libbsd0:armhf (0.3.0-2) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-3) ... Setting up libfontconfig1:armhf (2.9.0-3) ... Setting up libpixman-1-0:armhf (0.24.4-1) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.4.99.901-2) ... Setting up libx11-6:armhf (2:1.4.99.901-2) ... Setting up libxcb-render0:armhf (1.8.1-1) ... Setting up libxcb-shm0:armhf (1.8.1-1) ... Setting up libxrender1:armhf (1:0.9.7-1) ... Setting up libcairo2:armhf (1.12.2-1) ... Setting up libcroco3:armhf (0.6.5-1) ... Setting up libcups2:armhf (1.5.2-5) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libjasper1:armhf (1.900.1-13) ... Setting up libjbig0:armhf (2.0-2) ... Setting up libtiff4:armhf (3.9.6-5) ... Setting up libgdk-pixbuf2.0-common (2.26.1-1) ... Setting up libgdk-pixbuf2.0-0:armhf (2.26.1-1) ... Setting up libgfortran3:armhf (4.7.0-1.1+rpi) ... Setting up libgmpxx4ldbl:armhf (2:5.0.5+dfsg-1.1) ... Setting up libgtk2.0-common (2.24.10-1) ... Setting up libthai-data (0.1.17-1) ... Setting up libthai0:armhf (0.1.17-1) ... Setting up libxft2:armhf (2.2.0-3) ... Setting up fontconfig (2.9.0-3) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.30.0-1) ... Setting up libxcomposite1:armhf (1:0.4.3-2) ... Setting up libxfixes3:armhf (1:5.0-4) ... Setting up libxcursor1:armhf (1:1.1.13-1) ... Setting up libxdamage1:armhf (1:1.1.3-2) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxi6:armhf (2:1.6.0-1) ... Setting up libxinerama1:armhf (2:1.1.2-1) ... Setting up libxrandr2:armhf (2:1.3.2-2) ... Setting up shared-mime-info (0.90-1.1) ... Setting up libgtk2.0-0:armhf (2.24.10-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up x11-common (1:7.6+13) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libdb4.8:armhf (4.8.30-11) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7-minimal (2.7.3~rc2-2.1) ... Setting up python2.7 (2.7.3~rc2-2.1) ... Setting up python-minimal (2.7.2-10) ... Setting up python (2.7.2-10) ... Setting up python-support (1.0.14) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up python2.6 (2.6.7-4) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up sgml-base (1.26+nmu1) ... Setting up xml-core (0.13) ... Setting up docutils-common (0.8.1-6) ... Setting up fonts-lyx (2.0.3-2) ... Setting up libgmp-dev (2:5.0.5+dfsg-1.1) ... Setting up libffi-dev:armhf (3.0.10-3+b3) ... Setting up libbsd-dev (0.3.0-2) ... Setting up ghc (7.0.4-8) ... update-alternatives: using /usr/bin/ghc to provide /usr/bin/haskell-compiler (haskell-compiler) in auto mode. Turning /var/lib/ghc-7.0.3/package.conf.d into a symbolic link to /var/lib/ghc/package.conf.d/ Turning /var/lib/ghc-7.0.4/package.conf.d into a symbolic link to /var/lib/ghc/package.conf.d/ Setting up ghc6 (7.0.4-8) ... Setting up libgirepository-1.0-1 (1.32.1-1) ... Setting up gir1.2-glib-2.0 (1.32.1-1) ... Setting up libblas3gf (1.2.20110419-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up libexpat1-dev (2.1.0-1) ... Setting up libjs-jquery (1.7.1-1) ... Setting up libjs-underscore (1.1.6-1) ... Setting up libjs-sphinxdoc (1.1.3+dfsg-3) ... Setting up liblapack3gf (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libpython2.6 (2.6.7-4) ... Setting up libpython2.7 (2.7.3~rc2-2.1) ... Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-1) ... Setting up libssl-dev (1.0.1c-1) ... Setting up python-all (2.7.2-10) ... Setting up python2.7-dev (2.7.3~rc2-2.1) ... Setting up python-dev (2.7.2-10) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-all-dev (2.7.2-10) ... Setting up python-cairo (1.8.8-1) ... Setting up python-dateutil (1.5-1) ... Setting up python-roman (0.8.1-6) ... Setting up python-docutils (0.8.1-6) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode. Setting up python-gi (3.2.0-3) ... Setting up python-gobject-2 (2.28.6-10) ... Setting up python-gobject (3.2.0-3) ... Setting up python-markupsafe (0.15-1) ... Setting up python-jinja2 (2.6-1) ... Setting up python-matplotlib-data (1.1.1~rc1-2) ... Setting up python-pyparsing (1.5.2-2) ... Setting up python-tz (2011h-1) ... Setting up python-numpy (1:1.6.2~rc1-1) ... Setting up tcl8.5 (8.5.11-1) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.11-1) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up python-matplotlib (1.1.1~rc1-2) ... Setting up python-pygments (1.5+dfsg-1) ... Setting up sphinx-common (1.1.3+dfsg-3) ... Setting up python-sphinx (1.1.3+dfsg-3) ... Setting up python-cogent (1.5.1-2) ... Setting up sbuild-build-depends-qiime-dummy (0.invalid.0) ... Processing triggers for python-support ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 docutils-common_0.8.1-6 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.9.0-3 fontconfig-config_2.9.0-3 fonts-lyx_2.0.3-2 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 ghc_7.0.4-8 ghc6_7.0.4-8 gir1.2-glib-2.0_1.32.1-1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libatk1.0-0_2.4.0-2 libatk1.0-data_2.4.0-2 libattr1_1:2.4.46-5 libavahi-client3_0.6.31-1 libavahi-common-data_0.6.31-1 libavahi-common3_0.6.31-1 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbsd-dev_0.3.0-2 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libcairo2_1.12.2-1 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libcups2_1.5.2-5 libdatrie1_0.2.5-3 libdb4.8_4.8.30-11 libdb5.1_5.1.29-1 libdbus-1-3_1.5.12-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libexpat1-dev_2.1.0-1 libffi-dev_3.0.10-3+b3 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libfontconfig1_2.9.0-3 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgdk-pixbuf2.0-0_2.26.1-1 libgdk-pixbuf2.0-common_2.26.1-1 libgfortran3_4.7.0-1.1+rpi libgirepository-1.0-1_1.32.1-1 libglib2.0-0_2.32.2-1 libgmp-dev_2:5.0.5+dfsg-1.1 libgmp10_2:5.0.5+dfsg-1.1 libgmpxx4ldbl_2:5.0.5+dfsg-1.1 libgnutls26_2.12.19-1 libgomp1_4.7.0-1.1+rpi libgpg-error0_1.10-3 libgssapi-krb5-2_1.10.1+dfsg-1 libgtk2.0-0_2.24.10-1 libgtk2.0-common_2.24.10-1 libjasper1_1.900.1-13 libjbig0_2.0-2 libjpeg8_8d-1 libjs-jquery_1.7.1-1 libjs-sphinxdoc_1.1.3+dfsg-3 libjs-underscore_1.1.6-1 libk5crypto3_1.10.1+dfsg-1 libkeyutils1_1.5.5-2 libkrb5-3_1.10.1+dfsg-1 libkrb5support0_1.10.1+dfsg-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-7 libncursesw5_5.9-7 libp11-kit0_0.12-3 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpython2.6_2.6.7-4 libpython2.7_2.7.3~rc2-2.1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-3 libslang2_2.2.4-10 libsqlite3-0_3.7.11-3 libss2_1.42.2-2 libssl-dev_1.0.1c-1 libssl1.0.0_1.0.1c-1 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtasn1-3_2.12-1 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.99.901-2 libx11-data_2:1.4.99.901-2 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.13-1 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxft2_2.2.0-3 libxi6_2:1.6.0-1 libxinerama1_2:1.1.2-1 libxml2_2.7.8.dfsg-9 libxrandr2_2:1.3.2-2 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 python_2.7.2-10 python-all_2.7.2-10 python-all-dev_2.7.2-10 python-cairo_1.8.8-1 python-cogent_1.5.1-2 python-dateutil_1.5-1 python-dev_2.7.2-10 python-docutils_0.8.1-6 python-gi_3.2.0-3 python-gobject_3.2.0-3 python-gobject-2_2.28.6-10 python-jinja2_2.6-1 python-markupsafe_0.15-1 python-matplotlib_1.1.1~rc1-2 python-matplotlib-data_1.1.1~rc1-2 python-minimal_2.7.2-10 python-numpy_1:1.6.2~rc1-1 python-pygments_1.5+dfsg-1 python-pyparsing_1.5.2-2 python-roman_0.8.1-6 python-sphinx_1.1.3+dfsg-3 python-support_1.0.14 python-tz_2011h-1 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 python2.7_2.7.3~rc2-2.1 python2.7-dev_2.7.3~rc2-2.1 python2.7-minimal_2.7.3~rc2-2.1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-qiime-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1.1 sphinx-common_1.1.3+dfsg-3 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 x11-common_1:7.6+13 xml-core_0.13 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Apr 18 20:31:36 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./qiime_1.4.0-2.dsc dpkg-source: info: extracting qiime in qiime-1.4.0 dpkg-source: info: unpacking qiime_1.4.0.orig.tar.gz dpkg-source: info: unpacking qiime_1.4.0-2.debian.tar.gz dpkg-source: info: applying python26_trim_sff_primers.patch dpkg-source: info: applying fix_binary_helper_location.patch dpkg-source: info: applying ghc_7.4.2_compatibility.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-a06e198e-0b11-4f02-83ac-e6040b196399 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package qiime dpkg-buildpackage: source version 1.4.0-2 dpkg-source --before-build qiime-1.4.0 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean --with python2 dh_testdir dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' ghc --make -O2 FlowgramAli_4frame [1 of 3] Compiling ADPCombinators ( ADPCombinators.lhs, ADPCombinators.o ) [2 of 3] Compiling FlowgramUtils ( FlowgramUtils.lhs, FlowgramUtils.o ) [3 of 3] Compiling Main ( FlowgramAli_4frame.lhs, FlowgramAli_4frame.o ) Linking FlowgramAli_4frame ... make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running clean 'build/lib.linux-armv7l-2.6' does not exist -- can't clean it 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.6' does not exist -- can't clean it make[1]: Entering directory `/«PKGBUILDDIR»/doc' sphinx-build -b html -d _build/doctrees . _build/html Making output directory... Running Sphinx v1.1.3 loading pickled environment... not yet created building [html]: targets for 157 source files that are out of date updating environment: 157 added, 0 changed, 0 removed reading sources... [ 0%] developer/coding_guidelines reading sources... [ 1%] developer/index reading sources... [ 1%] developer/reporting_and_fixing_bugs reading sources... [ 2%] documentation/file_formats reading sources... [ 3%] documentation/index reading sources... [ 3%] documentation/script_index reading sources... [ 4%] index reading sources... [ 5%] install/index reading sources... [ 5%] install/install reading sources... [ 6%] install/qiime_config reading sources... [ 7%] install/ubuntu_install reading sources... [ 7%] install/upgrade reading sources... [ 8%] install/virtual_box reading sources... [ 8%] install/vm_ec2 reading sources... [ 9%] scripts/add_taxa reading sources... [ 10%] scripts/adjust_seq_orientation reading sources... [ 10%] scripts/align_seqs reading sources... 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[ 68%] scripts/plot_taxa_summary reading sources... [ 68%] scripts/poller reading sources... [ 69%] scripts/poller_example reading sources... [ 70%] scripts/pool_by_metadata reading sources... [ 70%] scripts/preferences_file reading sources... [ 71%] scripts/principal_coordinates reading sources... [ 71%] scripts/print_qiime_config reading sources... [ 72%] scripts/process_iseq reading sources... [ 73%] scripts/process_qseq reading sources... [ 73%] scripts/process_sff reading sources... [ 74%] scripts/quality_scores_plot reading sources... [ 75%] scripts/shared_phylotypes reading sources... [ 75%] scripts/simsam reading sources... [ 76%] scripts/single_rarefaction reading sources... [ 77%] scripts/sort_otu_table reading sources... [ 77%] scripts/split_fasta_on_sample_ids reading sources... [ 78%] scripts/split_libraries reading sources... [ 78%] scripts/split_libraries_fastq reading sources... [ 79%] scripts/split_libraries_illumina reading sources... [ 80%] scripts/split_otu_table reading sources... [ 80%] scripts/split_otu_table_by_taxonomy reading sources... [ 81%] scripts/start_parallel_jobs reading sources... [ 82%] scripts/start_parallel_jobs_torque reading sources... [ 82%] scripts/submit_to_mgrast reading sources... [ 83%] scripts/subsample_fasta reading sources... [ 84%] scripts/summarize_otu_by_cat reading sources... [ 84%] scripts/summarize_taxa reading sources... [ 85%] scripts/summarize_taxa_through_plots reading sources... [ 85%] scripts/supervised_learning reading sources... [ 86%] scripts/transform_coordinate_matrices reading sources... [ 87%] scripts/tree_compare reading sources... [ 87%] scripts/trflp_file_to_otu_table reading sources... [ 88%] scripts/trim_sff_primers reading sources... [ 89%] scripts/truncate_fasta_qual_files reading sources... [ 89%] scripts/unweight_fasta reading sources... [ 90%] scripts/upgma_cluster reading sources... [ 91%] tutorials/chaining_otu_pickers reading sources... [ 91%] tutorials/chimera_checking reading sources... [ 92%] tutorials/creating_distance_comparison_plots reading sources... [ 92%] tutorials/denoising_454_data reading sources... [ 93%] tutorials/index reading sources... [ 94%] tutorials/otupipe reading sources... [ 94%] tutorials/parallel_qiime reading sources... [ 95%] tutorials/processing_18S_data reading sources... [ 96%] tutorials/processing_illumina_data reading sources... [ 96%] tutorials/procrustes_analysis reading sources... [ 97%] tutorials/retraining_rdp reading sources... [ 98%] tutorials/running_supervised_learning reading sources... [ 98%] tutorials/tutorial reading sources... [ 99%] tutorials/unix_commands reading sources... [100%] tutorials/working_with_aws /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "link". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "web". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "zip". /«PKGBUILDDIR»/doc/install/install.rst:11: WARNING: Duplicate explicit target name: "src". /«PKGBUILDDIR»/doc/tutorials/otupipe.rst:5: WARNING: Duplicate explicit target name: "otupipe". looking for now-outdated files... none found pickling environment... done /«PKGBUILDDIR»/doc/developer/index.rst:: WARNING: document isn't included in any toctree /«PKGBUILDDIR»/doc/documentation/index.rst:: WARNING: document isn't included in any toctree /«PKGBUILDDIR»/doc/install/index.rst:: WARNING: document isn't included in any toctree /«PKGBUILDDIR»/doc/scripts/index.rst:: WARNING: document isn't included in any toctree /«PKGBUILDDIR»/doc/tutorials/index.rst:: WARNING: document isn't included in any toctree checking consistency... done preparing documents... done writing output... 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[ 24%] scripts/core_qiime_analyses writing output... [ 25%] scripts/count_seqs writing output... [ 26%] scripts/cytoscape_usage writing output... [ 26%] scripts/denoise_wrapper writing output... [ 27%] scripts/denoiser writing output... [ 28%] scripts/denoiser_preprocess writing output... [ 28%] scripts/denoiser_worker writing output... [ 29%] scripts/dissimilarity_mtx_stats writing output... [ 29%] scripts/distance_matrix_from_mapping writing output... [ 30%] scripts/exclude_seqs_by_blast writing output... [ 31%] scripts/extract_seqs_by_sample_id writing output... [ 31%] scripts/filter_alignment writing output... [ 32%] scripts/filter_by_metadata writing output... [ 33%] scripts/filter_distance_matrix writing output... [ 33%] scripts/filter_fasta writing output... [ 34%] scripts/filter_otu_table writing output... [ 35%] scripts/filter_otus_by_sample writing output... [ 35%] scripts/filter_tree writing output... [ 36%] scripts/fix_arb_fasta writing output... 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[ 49%] scripts/make_prefs_file writing output... [ 49%] scripts/make_qiime_py_file writing output... [ 50%] scripts/make_qiime_rst_file writing output... [ 50%] scripts/make_rarefaction_plots writing output... [ 51%] scripts/make_tep writing output... [ 52%] scripts/merge_mapping_files writing output... [ 52%] scripts/merge_otu_maps writing output... [ 53%] scripts/merge_otu_tables writing output... [ 54%] scripts/multiple_rarefactions writing output... [ 54%] scripts/multiple_rarefactions_even_depth writing output... [ 55%] scripts/neighbor_joining writing output... [ 56%] scripts/nmds writing output... [ 56%] scripts/otu_category_significance writing output... [ 57%] scripts/parallel_align_seqs_pynast writing output... [ 57%] scripts/parallel_alpha_diversity writing output... [ 58%] scripts/parallel_assign_taxonomy_blast writing output... [ 59%] scripts/parallel_assign_taxonomy_rdp writing output... [ 59%] scripts/parallel_beta_diversity writing output... [ 60%] scripts/parallel_blast writing output... [ 61%] scripts/parallel_identify_chimeric_seqs writing output... [ 61%] scripts/parallel_multiple_rarefactions writing output... [ 62%] scripts/parallel_pick_otus_blast writing output... [ 63%] scripts/parallel_pick_otus_uclust_ref writing output... [ 63%] scripts/per_library_stats writing output... [ 64%] scripts/pick_otus writing output... [ 64%] scripts/pick_otus_through_otu_table writing output... [ 65%] scripts/pick_reference_otus_through_otu_table writing output... [ 66%] scripts/pick_rep_set writing output... [ 66%] scripts/plot_rank_abundance_graph writing output... [ 67%] scripts/plot_semivariogram writing output... [ 68%] scripts/plot_taxa_summary writing output... [ 68%] scripts/poller writing output... [ 69%] scripts/poller_example writing output... [ 70%] scripts/pool_by_metadata writing output... [ 70%] scripts/preferences_file writing output... [ 71%] scripts/principal_coordinates writing output... [ 71%] scripts/print_qiime_config writing output... [ 72%] scripts/process_iseq writing output... [ 73%] scripts/process_qseq writing output... [ 73%] scripts/process_sff writing output... [ 74%] scripts/quality_scores_plot writing output... [ 75%] scripts/shared_phylotypes writing output... [ 75%] scripts/simsam writing output... [ 76%] scripts/single_rarefaction writing output... [ 77%] scripts/sort_otu_table writing output... [ 77%] scripts/split_fasta_on_sample_ids writing output... [ 78%] scripts/split_libraries writing output... [ 78%] scripts/split_libraries_fastq writing output... [ 79%] scripts/split_libraries_illumina writing output... [ 80%] scripts/split_otu_table writing output... [ 80%] scripts/split_otu_table_by_taxonomy writing output... [ 81%] scripts/start_parallel_jobs writing output... [ 82%] scripts/start_parallel_jobs_torque writing output... [ 82%] scripts/submit_to_mgrast writing output... [ 83%] scripts/subsample_fasta writing output... [ 84%] scripts/summarize_otu_by_cat writing output... [ 84%] scripts/summarize_taxa writing output... [ 85%] scripts/summarize_taxa_through_plots writing output... [ 85%] scripts/supervised_learning writing output... [ 86%] scripts/transform_coordinate_matrices writing output... [ 87%] scripts/tree_compare writing output... [ 87%] scripts/trflp_file_to_otu_table writing output... [ 88%] scripts/trim_sff_primers writing output... [ 89%] scripts/truncate_fasta_qual_files writing output... [ 89%] scripts/unweight_fasta writing output... [ 90%] scripts/upgma_cluster writing output... [ 91%] tutorials/chaining_otu_pickers writing output... [ 91%] tutorials/chimera_checking writing output... [ 92%] tutorials/creating_distance_comparison_plots writing output... [ 92%] tutorials/denoising_454_data writing output... [ 93%] tutorials/index writing output... [ 94%] tutorials/otupipe writing output... [ 94%] tutorials/parallel_qiime writing output... [ 95%] tutorials/processing_18S_data writing output... [ 96%] tutorials/processing_illumina_data writing output... [ 96%] tutorials/procrustes_analysis writing output... [ 97%] tutorials/retraining_rdp writing output... [ 98%] tutorials/running_supervised_learning writing output... [ 98%] tutorials/tutorial writing output... [ 99%] tutorials/unix_commands writing output... [100%] tutorials/working_with_aws writing additional files... genindex search copying images... [ 3%] tutorials/../images/taxheatmap.png copying images... [ 7%] tutorials/../images/pcoa1.png copying images... [ 10%] tutorials/../images/areachart1.png copying images... [ 14%] tutorials/../images/barchart1.png copying images... [ 17%] tutorials/../images/jackpcoa.png copying images... [ 21%] tutorials/../images/cyberduck_open_connection.png copying images... [ 25%] tutorials/../images/tree.png copying images... [ 28%] tutorials/../images/public_dns_entry.png copying images... [ 32%] tutorials/../images/time_comparisons2.png copying images... [ 35%] tutorials/../images/biplot.png copying images... [ 39%] tutorials/../images/cyberduck_opened_connection.png copying images... [ 42%] tutorials/../images/cyberduck_view_file.png copying images... [ 46%] tutorials/../images/distance_boxplots1.png copying images... [ 50%] tutorials/../images/cyberduck_drag_and_drop_output_file.png copying images... [ 53%] tutorials/../images/network.png copying images... [ 57%] tutorials/../images/time_comparisons3.png copying images... [ 60%] tutorials/../images/time_comparisons1.png copying images... [ 64%] tutorials/../images/pcoa2.png copying images... [ 67%] tutorials/../images/procrustes_tutorial_figure1.png copying images... [ 71%] tutorials/../images/heatmap.png copying images... [ 75%] tutorials/../images/rarecurve.png copying images... [ 78%] tutorials/../images/stop_instance.png copying images... [ 82%] tutorials/../images/fisheyeheatmap.png copying images... [ 85%] tutorials/../images/cyberduck_drag_and_drop_input_file.png copying images... [ 89%] tutorials/../images/cyberduck_create_output_file.png copying images... [ 92%] tutorials/../images/hist.png copying images... [ 96%] tutorials/../images/boottree.png copying images... [100%] tutorials/../images/UPGMAbytreatment.png copying static files... done dumping search index... done dumping object inventory... done build succeeded, 24 warnings. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/«PKGBUILDDIR»/doc' Local documentation built with Sphinx. Open to following path with a web browser: /«PKGBUILDDIR»/doc/_build/html/index.html make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running clean 'build/lib.linux-armv7l-2.7' does not exist -- can't clean it 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it make[1]: Entering directory `/«PKGBUILDDIR»/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.1.3 loading pickled environment... done building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/«PKGBUILDDIR»/doc' Local documentation built with Sphinx. Open to following path with a web browser: /«PKGBUILDDIR»/doc/_build/html/index.html debian/rules override_dh_clean make[1]: Entering directory `/«PKGBUILDDIR»' dh_clean rm -rf doc/_build ( cd qiime/support_files/denoiser/FlowgramAlignment && make clean ) || true make[2]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' rm *.o rm *.hi rm FlowgramAli_4frame make[2]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' rm -f qiime/support_files/denoiser/bin/* make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --with python2 dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' ghc --make -O2 FlowgramAli_4frame [1 of 3] Compiling ADPCombinators ( ADPCombinators.lhs, ADPCombinators.o ) [2 of 3] Compiling FlowgramUtils ( FlowgramUtils.lhs, FlowgramUtils.o ) [3 of 3] Compiling Main ( FlowgramAli_4frame.lhs, FlowgramAli_4frame.o ) Linking FlowgramAli_4frame ... make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running build running build_py creating build creating build/lib.linux-armv7l-2.6 creating build/lib.linux-armv7l-2.6/qiime copying qiime/hamming.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_fastq.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/cluster_quality.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/beta_metrics.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/check_id_map.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_distance_histograms.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/pick_otus.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/summarize_otu_by_cat.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/pool_by_metadata.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/tree_compare.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/__init__.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/submit_to_mgrast.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/pick_rep_set.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/shared_phylotypes.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/filter_by_metadata.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_per_library_sff.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/filter.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/util.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/distance_matrix_from_mapping.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/merge_mapping_files.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/exclude_seqs_by_blast.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/hierarchical_cluster.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/filter_alignment.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/barcode.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/parse.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/identify_chimeric_seqs.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_otu_heatmap.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_rarefaction_plots.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/biplots.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/workflow.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_3d_plots.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/denoise_wrapper.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/split_libraries.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/summarize_taxa.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/adjust_seq_orientation.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/filter_otus_by_sample.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/alpha_diversity.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/principal_coordinates.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/filter_otu_table.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/supervised_learning.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/plot_taxa_summary.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/group.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_otu_network.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_2d_plots.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/simsam.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/categorized_dist_scatterplot.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_otu_table.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/rarefaction.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/quality_scores_plot.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/compare_alpha_diversity.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/nmds.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/collate_alpha.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/plot_rank_abundance_graph.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/plot_semivariogram.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/truncate_fasta_qual_files.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/otu_category_significance.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/longitudinal_otu_category_significance.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_library_id_lists.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/sort.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/split_libraries_fastq.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/beta_diversity.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/add_taxa.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/colors.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/process_sff.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/trim_sff_primers.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_phylogeny.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/assign_taxonomy.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_otu_heatmap_html.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/format.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/align_seqs.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/make_bootstrapped_tree.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/split_libraries_illumina.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/golay.py -> build/lib.linux-armv7l-2.6/qiime copying qiime/transform_coordinate_matrices.py -> build/lib.linux-armv7l-2.6/qiime creating build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/pick_otus_uclust_ref.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/__init__.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/assign_taxonomy_blast.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/util.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/pick_otus_blast.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/assign_taxonomy_rdp.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/identify_chimeric_seqs.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/poller.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/alpha_diversity.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/align_seqs_pynast.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/beta_diversity.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/multiple_rarefactions.py -> build/lib.linux-armv7l-2.6/qiime/parallel copying qiime/parallel/blast.py -> build/lib.linux-armv7l-2.6/qiime/parallel creating build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/__init__.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/uclust.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/muscle.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/rdp_classifier.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/usearch.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/tree.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/distribution_plots.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports copying qiime/pycogent_backports/rdp_classifier20.py -> build/lib.linux-armv7l-2.6/qiime/pycogent_backports creating build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/flowgram_filter.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/preprocess.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/flowgram_clustering.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/__init__.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/utils.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/cluster_utils.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/denoise_postprocess.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/make_cluster_jobs.py -> build/lib.linux-armv7l-2.6/qiime/denoiser copying qiime/denoiser/denoise_worker.py -> build/lib.linux-armv7l-2.6/qiime/denoiser creating build/lib.linux-armv7l-2.6/qiime/support_files copying qiime/support_files/qiime_config -> build/lib.linux-armv7l-2.6/qiime/support_files creating build/lib.linux-armv7l-2.6/qiime/support_files/css copying qiime/support_files/css/qiime_style.css -> build/lib.linux-armv7l-2.6/qiime/support_files/css creating build/lib.linux-armv7l-2.6/qiime/support_files/images copying qiime/support_files/images/qiime_header.png -> build/lib.linux-armv7l-2.6/qiime/support_files/images creating build/lib.linux-armv7l-2.6/qiime/support_files/jar copying qiime/support_files/jar/king.jar -> build/lib.linux-armv7l-2.6/qiime/support_files/jar creating build/lib.linux-armv7l-2.6/qiime/support_files/js copying qiime/support_files/js/histograms.js -> build/lib.linux-armv7l-2.6/qiime/support_files/js copying qiime/support_files/js/overlib.js -> build/lib.linux-armv7l-2.6/qiime/support_files/js copying qiime/support_files/js/otu_count_display.js -> build/lib.linux-armv7l-2.6/qiime/support_files/js copying qiime/support_files/js/jquery.js -> build/lib.linux-armv7l-2.6/qiime/support_files/js copying qiime/support_files/js/jquery.tablednd_0_5.js -> build/lib.linux-armv7l-2.6/qiime/support_files/js creating build/lib.linux-armv7l-2.6/qiime/support_files/R copying qiime/support_files/R/randomforests_util.r -> build/lib.linux-armv7l-2.6/qiime/support_files/R copying qiime/support_files/R/loaddata.r -> build/lib.linux-armv7l-2.6/qiime/support_files/R copying qiime/support_files/R/randomforests.r -> build/lib.linux-armv7l-2.6/qiime/support_files/R copying qiime/support_files/R/util.r -> build/lib.linux-armv7l-2.6/qiime/support_files/R creating build/lib.linux-armv7l-2.6/qiime/support_files/denoiser creating build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/probabilities.txt -> build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/FLX_error_profile.dat -> build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/Data creating build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_set_seqs.fna -> build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_flow_file.dat -> build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData running build_scripts creating build/scripts-2.6 copying and adjusting scripts/parallel_pick_otus_blast.py -> build/scripts-2.6 copying and adjusting scripts/beta_diversity_through_plots.py -> build/scripts-2.6 copying and adjusting scripts/jackknifed_beta_diversity.py -> build/scripts-2.6 copying and adjusting scripts/make_fastq.py -> build/scripts-2.6 copying and adjusting scripts/cluster_quality.py -> build/scripts-2.6 copying and adjusting scripts/check_id_map.py -> build/scripts-2.6 copying and adjusting scripts/make_distance_histograms.py -> build/scripts-2.6 copying and adjusting scripts/convert_otu_table_to_unifrac_sample_mapping.py -> build/scripts-2.6 copying and adjusting scripts/pick_otus.py -> build/scripts-2.6 copying and adjusting scripts/denoiser_preprocess.py -> build/scripts-2.6 copying and adjusting scripts/parallel_pick_otus_uclust_ref.py -> build/scripts-2.6 copying and adjusting scripts/summarize_otu_by_cat.py -> build/scripts-2.6 copying and adjusting scripts/pool_by_metadata.py -> build/scripts-2.6 copying and adjusting scripts/tree_compare.py -> build/scripts-2.6 copying and adjusting scripts/denoiser_worker.py -> build/scripts-2.6 copying and adjusting scripts/make_prefs_file.py -> build/scripts-2.6 copying and adjusting scripts/single_rarefaction.py -> build/scripts-2.6 copying and adjusting scripts/submit_to_mgrast.py -> build/scripts-2.6 copying and adjusting scripts/pick_rep_set.py -> build/scripts-2.6 copying and adjusting scripts/beta_diversity_through_3d_plots.py -> build/scripts-2.6 copying and adjusting scripts/shared_phylotypes.py -> build/scripts-2.6 copying and adjusting scripts/trflp_file_to_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/merge_otu_tables.py -> build/scripts-2.6 copying and adjusting scripts/sort_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/filter_by_metadata.py -> build/scripts-2.6 copying and adjusting scripts/parallel_identify_chimeric_seqs.py -> build/scripts-2.6 copying and adjusting scripts/make_per_library_sff.py -> build/scripts-2.6 copying and adjusting scripts/filter_distance_matrix.py -> build/scripts-2.6 copying and adjusting scripts/distance_matrix_from_mapping.py -> build/scripts-2.6 copying and adjusting scripts/fix_arb_fasta.py -> build/scripts-2.6 copying and adjusting scripts/merge_mapping_files.py -> build/scripts-2.6 copying and adjusting scripts/exclude_seqs_by_blast.py -> build/scripts-2.6 copying and adjusting scripts/filter_alignment.py -> build/scripts-2.6 copying and adjusting scripts/merge_otu_maps.py -> build/scripts-2.6 copying and adjusting scripts/identify_chimeric_seqs.py -> build/scripts-2.6 copying and adjusting scripts/make_qiime_py_file.py -> build/scripts-2.6 copying and adjusting scripts/make_otu_heatmap.py -> build/scripts-2.6 copying and adjusting scripts/make_rarefaction_plots.py -> build/scripts-2.6 copying and adjusting scripts/unweight_fasta.py -> build/scripts-2.6 copying and adjusting scripts/parallel_multiple_rarefactions.py -> build/scripts-2.6 copying and adjusting scripts/filter_tree.py -> build/scripts-2.6 copying and adjusting scripts/start_parallel_jobs_torque.py -> build/scripts-2.6 copying and adjusting scripts/pick_reference_otus_through_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/make_qiime_rst_file.py -> build/scripts-2.6 copying and adjusting scripts/make_3d_plots.py -> build/scripts-2.6 copying and adjusting scripts/denoise_wrapper.py -> build/scripts-2.6 copying and adjusting scripts/subsample_fasta.py -> build/scripts-2.6 copying and adjusting scripts/split_libraries.py -> build/scripts-2.6 copying and adjusting scripts/poller.py -> build/scripts-2.6 copying and adjusting scripts/summarize_taxa.py -> build/scripts-2.6 copying and adjusting scripts/summarize_taxa_through_plots.py -> build/scripts-2.6 copying and adjusting scripts/adjust_seq_orientation.py -> build/scripts-2.6 copying and adjusting scripts/filter_otus_by_sample.py -> build/scripts-2.6 copying and adjusting scripts/alpha_diversity.py -> build/scripts-2.6 copying and adjusting scripts/principal_coordinates.py -> build/scripts-2.6 copying and adjusting scripts/split_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/filter_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/count_seqs.py -> build/scripts-2.6 copying and adjusting scripts/process_iseq.py -> build/scripts-2.6 copying and adjusting scripts/parallel_align_seqs_pynast.py -> build/scripts-2.6 copying and adjusting scripts/supervised_learning.py -> build/scripts-2.6 copying and adjusting scripts/plot_taxa_summary.py -> build/scripts-2.6 copying and adjusting scripts/make_distance_boxplots.py -> build/scripts-2.6 copying and adjusting scripts/print_qiime_config.py -> build/scripts-2.6 copying and adjusting scripts/poller_example.py -> build/scripts-2.6 copying and adjusting scripts/make_otu_network.py -> build/scripts-2.6 copying and adjusting scripts/make_2d_plots.py -> build/scripts-2.6 copying and adjusting scripts/alpha_rarefaction.py -> build/scripts-2.6 copying and adjusting scripts/upgma_cluster.py -> build/scripts-2.6 copying and adjusting scripts/compare_3d_plots.py -> build/scripts-2.6 copying and adjusting scripts/simsam.py -> build/scripts-2.6 copying and adjusting scripts/categorized_dist_scatterplot.py -> build/scripts-2.6 copying and adjusting scripts/make_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/denoiser.py -> build/scripts-2.6 copying and adjusting scripts/parallel_assign_taxonomy_rdp.py -> build/scripts-2.6 copying and adjusting scripts/pick_otus_through_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/start_parallel_jobs.py -> build/scripts-2.6 copying and adjusting scripts/parallel_alpha_diversity.py -> build/scripts-2.6 copying and adjusting scripts/dissimilarity_mtx_stats.py -> build/scripts-2.6 copying and adjusting scripts/compare_distance_matrices.py -> build/scripts-2.6 copying and adjusting scripts/quality_scores_plot.py -> build/scripts-2.6 copying and adjusting scripts/compare_alpha_diversity.py -> build/scripts-2.6 copying and adjusting scripts/nmds.py -> build/scripts-2.6 copying and adjusting scripts/ampliconnoise.py -> build/scripts-2.6 copying and adjusting scripts/parallel_assign_taxonomy_blast.py -> build/scripts-2.6 copying and adjusting scripts/collate_alpha.py -> build/scripts-2.6 copying and adjusting scripts/consensus_tree.py -> build/scripts-2.6 copying and adjusting scripts/plot_rank_abundance_graph.py -> build/scripts-2.6 copying and adjusting scripts/parallel_beta_diversity.py -> build/scripts-2.6 copying and adjusting scripts/plot_semivariogram.py -> build/scripts-2.6 copying and adjusting scripts/inflate_denoiser_output.py -> build/scripts-2.6 copying and adjusting scripts/extract_seqs_by_sample_id.py -> build/scripts-2.6 copying and adjusting scripts/truncate_fasta_qual_files.py -> build/scripts-2.6 copying and adjusting scripts/convert_unifrac_sample_mapping_to_otu_table.py -> build/scripts-2.6 copying and adjusting scripts/otu_category_significance.py -> build/scripts-2.6 copying and adjusting scripts/make_tep.py -> build/scripts-2.6 copying and adjusting scripts/make_library_id_lists.py -> build/scripts-2.6 copying and adjusting scripts/split_libraries_fastq.py -> build/scripts-2.6 copying and adjusting scripts/beta_diversity.py -> build/scripts-2.6 copying and adjusting scripts/split_fasta_on_sample_ids.py -> build/scripts-2.6 copying and adjusting scripts/add_taxa.py -> build/scripts-2.6 copying and adjusting scripts/parallel_blast.py -> build/scripts-2.6 copying and adjusting scripts/process_qseq.py -> build/scripts-2.6 copying and adjusting scripts/filter_fasta.py -> build/scripts-2.6 copying and adjusting scripts/process_sff.py -> build/scripts-2.6 copying and adjusting scripts/trim_sff_primers.py -> build/scripts-2.6 copying and adjusting scripts/make_phylogeny.py -> build/scripts-2.6 copying and adjusting scripts/split_otu_table_by_taxonomy.py -> build/scripts-2.6 copying and adjusting scripts/multiple_rarefactions_even_depth.py -> build/scripts-2.6 copying and adjusting scripts/blast_wrapper.py -> build/scripts-2.6 copying and adjusting scripts/assign_taxonomy.py -> build/scripts-2.6 copying and adjusting scripts/beta_significance.py -> build/scripts-2.6 copying and adjusting scripts/make_otu_heatmap_html.py -> build/scripts-2.6 copying and adjusting scripts/core_qiime_analyses.py -> build/scripts-2.6 copying and adjusting scripts/multiple_rarefactions.py -> build/scripts-2.6 copying and adjusting scripts/make_distance_comparison_plots.py -> build/scripts-2.6 copying and adjusting scripts/align_seqs.py -> build/scripts-2.6 copying and adjusting scripts/per_library_stats.py -> build/scripts-2.6 copying and adjusting scripts/neighbor_joining.py -> build/scripts-2.6 copying and adjusting scripts/make_bootstrapped_tree.py -> build/scripts-2.6 copying and adjusting scripts/split_libraries_illumina.py -> build/scripts-2.6 copying and adjusting scripts/identify_missing_files.py -> build/scripts-2.6 copying and adjusting scripts/transform_coordinate_matrices.py -> build/scripts-2.6 copying scripts/ec2Clean -> build/scripts-2.6 copying scripts/ec2Dispatch -> build/scripts-2.6 changing mode of build/scripts-2.6/parallel_pick_otus_blast.py from 664 to 775 changing mode of build/scripts-2.6/beta_diversity_through_plots.py from 664 to 775 changing mode of build/scripts-2.6/jackknifed_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.6/make_fastq.py from 664 to 775 changing mode of build/scripts-2.6/cluster_quality.py from 664 to 775 changing mode of build/scripts-2.6/check_id_map.py from 664 to 775 changing mode of build/scripts-2.6/make_distance_histograms.py from 664 to 775 changing mode of build/scripts-2.6/convert_otu_table_to_unifrac_sample_mapping.py from 664 to 775 changing mode of build/scripts-2.6/pick_otus.py from 664 to 775 changing mode of build/scripts-2.6/denoiser_preprocess.py from 664 to 775 changing mode of build/scripts-2.6/parallel_pick_otus_uclust_ref.py from 664 to 775 changing mode of build/scripts-2.6/summarize_otu_by_cat.py from 664 to 775 changing mode of build/scripts-2.6/pool_by_metadata.py from 664 to 775 changing mode of build/scripts-2.6/tree_compare.py from 664 to 775 changing mode of build/scripts-2.6/denoiser_worker.py from 664 to 775 changing mode of build/scripts-2.6/make_prefs_file.py from 664 to 775 changing mode of build/scripts-2.6/single_rarefaction.py from 664 to 775 changing mode of build/scripts-2.6/submit_to_mgrast.py from 664 to 775 changing mode of build/scripts-2.6/pick_rep_set.py from 664 to 775 changing mode of build/scripts-2.6/beta_diversity_through_3d_plots.py from 664 to 775 changing mode of build/scripts-2.6/shared_phylotypes.py from 664 to 775 changing mode of build/scripts-2.6/trflp_file_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/merge_otu_tables.py from 664 to 775 changing mode of build/scripts-2.6/sort_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/filter_by_metadata.py from 664 to 775 changing mode of build/scripts-2.6/parallel_identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.6/make_per_library_sff.py from 664 to 775 changing mode of build/scripts-2.6/filter_distance_matrix.py from 664 to 775 changing mode of build/scripts-2.6/distance_matrix_from_mapping.py from 664 to 775 changing mode of build/scripts-2.6/fix_arb_fasta.py from 664 to 775 changing mode of build/scripts-2.6/merge_mapping_files.py from 664 to 775 changing mode of build/scripts-2.6/exclude_seqs_by_blast.py from 664 to 775 changing mode of build/scripts-2.6/filter_alignment.py from 664 to 775 changing mode of build/scripts-2.6/merge_otu_maps.py from 664 to 775 changing mode of build/scripts-2.6/identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.6/make_qiime_py_file.py from 664 to 775 changing mode of build/scripts-2.6/make_otu_heatmap.py from 664 to 775 changing mode of build/scripts-2.6/make_rarefaction_plots.py from 664 to 775 changing mode of build/scripts-2.6/unweight_fasta.py from 664 to 775 changing mode of build/scripts-2.6/parallel_multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.6/filter_tree.py from 664 to 775 changing mode of build/scripts-2.6/start_parallel_jobs_torque.py from 664 to 775 changing mode of build/scripts-2.6/pick_reference_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/make_qiime_rst_file.py from 664 to 775 changing mode of build/scripts-2.6/make_3d_plots.py from 664 to 775 changing mode of build/scripts-2.6/denoise_wrapper.py from 664 to 775 changing mode of build/scripts-2.6/subsample_fasta.py from 664 to 775 changing mode of build/scripts-2.6/split_libraries.py from 664 to 775 changing mode of build/scripts-2.6/poller.py from 664 to 775 changing mode of build/scripts-2.6/summarize_taxa.py from 664 to 775 changing mode of build/scripts-2.6/summarize_taxa_through_plots.py from 664 to 775 changing mode of build/scripts-2.6/adjust_seq_orientation.py from 664 to 775 changing mode of build/scripts-2.6/filter_otus_by_sample.py from 664 to 775 changing mode of build/scripts-2.6/alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.6/principal_coordinates.py from 664 to 775 changing mode of build/scripts-2.6/split_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/filter_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/count_seqs.py from 664 to 775 changing mode of build/scripts-2.6/process_iseq.py from 664 to 775 changing mode of build/scripts-2.6/parallel_align_seqs_pynast.py from 664 to 775 changing mode of build/scripts-2.6/supervised_learning.py from 664 to 775 changing mode of build/scripts-2.6/plot_taxa_summary.py from 664 to 775 changing mode of build/scripts-2.6/make_distance_boxplots.py from 664 to 775 changing mode of build/scripts-2.6/print_qiime_config.py from 664 to 775 changing mode of build/scripts-2.6/poller_example.py from 664 to 775 changing mode of build/scripts-2.6/make_otu_network.py from 664 to 775 changing mode of build/scripts-2.6/make_2d_plots.py from 664 to 775 changing mode of build/scripts-2.6/alpha_rarefaction.py from 664 to 775 changing mode of build/scripts-2.6/upgma_cluster.py from 664 to 775 changing mode of build/scripts-2.6/compare_3d_plots.py from 664 to 775 changing mode of build/scripts-2.6/simsam.py from 664 to 775 changing mode of build/scripts-2.6/categorized_dist_scatterplot.py from 664 to 775 changing mode of build/scripts-2.6/make_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/denoiser.py from 664 to 775 changing mode of build/scripts-2.6/parallel_assign_taxonomy_rdp.py from 664 to 775 changing mode of build/scripts-2.6/pick_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/start_parallel_jobs.py from 664 to 775 changing mode of build/scripts-2.6/parallel_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.6/dissimilarity_mtx_stats.py from 664 to 775 changing mode of build/scripts-2.6/compare_distance_matrices.py from 664 to 775 changing mode of build/scripts-2.6/quality_scores_plot.py from 664 to 775 changing mode of build/scripts-2.6/compare_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.6/nmds.py from 664 to 775 changing mode of build/scripts-2.6/ampliconnoise.py from 664 to 775 changing mode of build/scripts-2.6/parallel_assign_taxonomy_blast.py from 664 to 775 changing mode of build/scripts-2.6/collate_alpha.py from 664 to 775 changing mode of build/scripts-2.6/consensus_tree.py from 664 to 775 changing mode of build/scripts-2.6/plot_rank_abundance_graph.py from 664 to 775 changing mode of build/scripts-2.6/parallel_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.6/plot_semivariogram.py from 664 to 775 changing mode of build/scripts-2.6/inflate_denoiser_output.py from 664 to 775 changing mode of build/scripts-2.6/extract_seqs_by_sample_id.py from 664 to 775 changing mode of build/scripts-2.6/truncate_fasta_qual_files.py from 664 to 775 changing mode of build/scripts-2.6/convert_unifrac_sample_mapping_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.6/otu_category_significance.py from 664 to 775 changing mode of build/scripts-2.6/make_tep.py from 664 to 775 changing mode of build/scripts-2.6/make_library_id_lists.py from 664 to 775 changing mode of build/scripts-2.6/split_libraries_fastq.py from 664 to 775 changing mode of build/scripts-2.6/beta_diversity.py from 664 to 775 changing mode of build/scripts-2.6/split_fasta_on_sample_ids.py from 664 to 775 changing mode of build/scripts-2.6/add_taxa.py from 664 to 775 changing mode of build/scripts-2.6/parallel_blast.py from 664 to 775 changing mode of build/scripts-2.6/process_qseq.py from 664 to 775 changing mode of build/scripts-2.6/filter_fasta.py from 664 to 775 changing mode of build/scripts-2.6/process_sff.py from 664 to 775 changing mode of build/scripts-2.6/trim_sff_primers.py from 664 to 775 changing mode of build/scripts-2.6/make_phylogeny.py from 664 to 775 changing mode of build/scripts-2.6/split_otu_table_by_taxonomy.py from 664 to 775 changing mode of build/scripts-2.6/multiple_rarefactions_even_depth.py from 664 to 775 changing mode of build/scripts-2.6/blast_wrapper.py from 664 to 775 changing mode of build/scripts-2.6/assign_taxonomy.py from 664 to 775 changing mode of build/scripts-2.6/beta_significance.py from 664 to 775 changing mode of build/scripts-2.6/make_otu_heatmap_html.py from 664 to 775 changing mode of build/scripts-2.6/core_qiime_analyses.py from 664 to 775 changing mode of build/scripts-2.6/multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.6/make_distance_comparison_plots.py from 664 to 775 changing mode of build/scripts-2.6/align_seqs.py from 664 to 775 changing mode of build/scripts-2.6/per_library_stats.py from 664 to 775 changing mode of build/scripts-2.6/neighbor_joining.py from 664 to 775 changing mode of build/scripts-2.6/make_bootstrapped_tree.py from 664 to 775 changing mode of build/scripts-2.6/split_libraries_illumina.py from 664 to 775 changing mode of build/scripts-2.6/identify_missing_files.py from 664 to 775 changing mode of build/scripts-2.6/transform_coordinate_matrices.py from 664 to 775 make[1]: Entering directory `/«PKGBUILDDIR»/doc' sphinx-build -b html -d _build/doctrees . _build/html Making output directory... Running Sphinx v1.1.3 loading pickled environment... not yet created building [html]: targets for 157 source files that are out of date updating environment: 157 added, 0 changed, 0 removed reading sources... [ 0%] developer/coding_guidelines reading sources... [ 1%] developer/index reading sources... [ 1%] developer/reporting_and_fixing_bugs reading sources... [ 2%] documentation/file_formats reading sources... [ 3%] documentation/index reading sources... [ 3%] documentation/script_index reading sources... [ 4%] index reading sources... [ 5%] install/index reading sources... [ 5%] install/install reading sources... [ 6%] install/qiime_config reading sources... [ 7%] install/ubuntu_install reading sources... [ 7%] install/upgrade reading sources... [ 8%] install/virtual_box reading sources... [ 8%] install/vm_ec2 reading sources... [ 9%] scripts/add_taxa reading sources... [ 10%] scripts/adjust_seq_orientation reading sources... [ 10%] scripts/align_seqs reading sources... [ 11%] scripts/alpha_diversity reading sources... [ 12%] scripts/alpha_diversity_metrics reading sources... [ 12%] scripts/alpha_rarefaction reading sources... [ 13%] scripts/ampliconnoise reading sources... [ 14%] scripts/assign_taxonomy reading sources... [ 14%] scripts/beta_diversity reading sources... [ 15%] scripts/beta_diversity_metrics reading sources... [ 15%] scripts/beta_diversity_through_3d_plots reading sources... [ 16%] scripts/beta_diversity_through_plots reading sources... [ 17%] scripts/beta_significance reading sources... [ 17%] scripts/blast_wrapper reading sources... [ 18%] scripts/categorized_dist_scatterplot reading sources... [ 19%] scripts/check_id_map reading sources... [ 19%] scripts/cluster_quality reading sources... [ 20%] scripts/collate_alpha reading sources... [ 21%] scripts/compare_3d_plots reading sources... [ 21%] scripts/compare_alpha_diversity reading sources... [ 22%] scripts/compare_distance_matrices reading sources... [ 22%] scripts/consensus_tree reading sources... [ 23%] scripts/convert_otu_table_to_unifrac_sample_mapping reading sources... [ 24%] scripts/convert_unifrac_sample_mapping_to_otu_table reading sources... [ 24%] scripts/core_qiime_analyses reading sources... [ 25%] scripts/count_seqs reading sources... [ 26%] scripts/cytoscape_usage reading sources... [ 26%] scripts/denoise_wrapper reading sources... [ 27%] scripts/denoiser reading sources... [ 28%] scripts/denoiser_preprocess reading sources... [ 28%] scripts/denoiser_worker reading sources... [ 29%] scripts/dissimilarity_mtx_stats reading sources... [ 29%] scripts/distance_matrix_from_mapping reading sources... [ 30%] scripts/exclude_seqs_by_blast reading sources... [ 31%] scripts/extract_seqs_by_sample_id reading sources... [ 31%] scripts/filter_alignment reading sources... [ 32%] scripts/filter_by_metadata reading sources... [ 33%] scripts/filter_distance_matrix reading sources... [ 33%] scripts/filter_fasta reading sources... [ 34%] scripts/filter_otu_table reading sources... [ 35%] scripts/filter_otus_by_sample reading sources... [ 35%] scripts/filter_tree reading sources... [ 36%] scripts/fix_arb_fasta reading sources... [ 36%] scripts/identify_chimeric_seqs reading sources... [ 37%] scripts/identify_missing_files reading sources... [ 38%] scripts/index reading sources... [ 38%] scripts/inflate_denoiser_output reading sources... [ 39%] scripts/jackknifed_beta_diversity reading sources... [ 40%] scripts/make_2d_plots reading sources... [ 40%] scripts/make_3d_plots reading sources... [ 41%] scripts/make_bootstrapped_tree reading sources... [ 42%] scripts/make_distance_boxplots reading sources... [ 42%] scripts/make_distance_comparison_plots reading sources... [ 43%] scripts/make_distance_histograms reading sources... [ 43%] scripts/make_fastq reading sources... [ 44%] scripts/make_library_id_lists reading sources... [ 45%] scripts/make_otu_heatmap reading sources... 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[ 95%] tutorials/processing_18S_data writing output... [ 96%] tutorials/processing_illumina_data writing output... [ 96%] tutorials/procrustes_analysis writing output... [ 97%] tutorials/retraining_rdp writing output... [ 98%] tutorials/running_supervised_learning writing output... [ 98%] tutorials/tutorial writing output... [ 99%] tutorials/unix_commands writing output... [100%] tutorials/working_with_aws writing additional files... genindex search copying images... [ 3%] tutorials/../images/taxheatmap.png copying images... [ 7%] tutorials/../images/pcoa1.png copying images... [ 10%] tutorials/../images/areachart1.png copying images... [ 14%] tutorials/../images/barchart1.png copying images... [ 17%] tutorials/../images/jackpcoa.png copying images... [ 21%] tutorials/../images/cyberduck_open_connection.png copying images... [ 25%] tutorials/../images/tree.png copying images... [ 28%] tutorials/../images/public_dns_entry.png copying images... [ 32%] tutorials/../images/time_comparisons2.png copying images... [ 35%] tutorials/../images/biplot.png copying images... [ 39%] tutorials/../images/cyberduck_opened_connection.png copying images... [ 42%] tutorials/../images/cyberduck_view_file.png copying images... [ 46%] tutorials/../images/distance_boxplots1.png copying images... [ 50%] tutorials/../images/cyberduck_drag_and_drop_output_file.png copying images... [ 53%] tutorials/../images/network.png copying images... [ 57%] tutorials/../images/time_comparisons3.png copying images... [ 60%] tutorials/../images/time_comparisons1.png copying images... [ 64%] tutorials/../images/pcoa2.png copying images... [ 67%] tutorials/../images/procrustes_tutorial_figure1.png copying images... [ 71%] tutorials/../images/heatmap.png copying images... [ 75%] tutorials/../images/rarecurve.png copying images... [ 78%] tutorials/../images/stop_instance.png copying images... [ 82%] tutorials/../images/fisheyeheatmap.png copying images... [ 85%] tutorials/../images/cyberduck_drag_and_drop_input_file.png copying images... [ 89%] tutorials/../images/cyberduck_create_output_file.png copying images... [ 92%] tutorials/../images/hist.png copying images... [ 96%] tutorials/../images/boottree.png copying images... [100%] tutorials/../images/UPGMAbytreatment.png copying static files... done dumping search index... done dumping object inventory... done build succeeded, 24 warnings. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/«PKGBUILDDIR»/doc' Local documentation built with Sphinx. Open to following path with a web browser: /«PKGBUILDDIR»/doc/_build/html/index.html make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running build running build_py creating build/lib.linux-armv7l-2.7 creating build/lib.linux-armv7l-2.7/qiime copying qiime/hamming.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_fastq.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/cluster_quality.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/beta_metrics.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/check_id_map.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_distance_histograms.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/pick_otus.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/summarize_otu_by_cat.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/pool_by_metadata.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/tree_compare.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/__init__.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/submit_to_mgrast.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/pick_rep_set.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/shared_phylotypes.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/filter_by_metadata.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_per_library_sff.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/filter.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/util.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/distance_matrix_from_mapping.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/merge_mapping_files.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/exclude_seqs_by_blast.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/hierarchical_cluster.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/filter_alignment.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/barcode.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/parse.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/identify_chimeric_seqs.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_otu_heatmap.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_rarefaction_plots.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/biplots.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/workflow.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_3d_plots.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/denoise_wrapper.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/split_libraries.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/summarize_taxa.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/adjust_seq_orientation.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/filter_otus_by_sample.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/alpha_diversity.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/principal_coordinates.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/filter_otu_table.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/supervised_learning.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/plot_taxa_summary.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/group.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_otu_network.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_2d_plots.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/simsam.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/categorized_dist_scatterplot.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_otu_table.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/rarefaction.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/quality_scores_plot.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/compare_alpha_diversity.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/nmds.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/collate_alpha.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/plot_rank_abundance_graph.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/plot_semivariogram.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/truncate_fasta_qual_files.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/otu_category_significance.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/longitudinal_otu_category_significance.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_library_id_lists.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/sort.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/split_libraries_fastq.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/beta_diversity.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/add_taxa.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/colors.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/process_sff.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/trim_sff_primers.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_phylogeny.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/assign_taxonomy.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_otu_heatmap_html.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/format.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/align_seqs.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/make_bootstrapped_tree.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/split_libraries_illumina.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/golay.py -> build/lib.linux-armv7l-2.7/qiime copying qiime/transform_coordinate_matrices.py -> build/lib.linux-armv7l-2.7/qiime creating build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/pick_otus_uclust_ref.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/__init__.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/assign_taxonomy_blast.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/util.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/pick_otus_blast.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/assign_taxonomy_rdp.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/identify_chimeric_seqs.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/poller.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/alpha_diversity.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/align_seqs_pynast.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/beta_diversity.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/multiple_rarefactions.py -> build/lib.linux-armv7l-2.7/qiime/parallel copying qiime/parallel/blast.py -> build/lib.linux-armv7l-2.7/qiime/parallel creating build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/__init__.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/uclust.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/muscle.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/rdp_classifier.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/usearch.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/tree.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/distribution_plots.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/rdp_classifier20.py -> build/lib.linux-armv7l-2.7/qiime/pycogent_backports creating build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/flowgram_filter.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/preprocess.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/flowgram_clustering.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/__init__.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/utils.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/cluster_utils.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/denoise_postprocess.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/make_cluster_jobs.py -> build/lib.linux-armv7l-2.7/qiime/denoiser copying qiime/denoiser/denoise_worker.py -> build/lib.linux-armv7l-2.7/qiime/denoiser creating build/lib.linux-armv7l-2.7/qiime/support_files copying qiime/support_files/qiime_config -> build/lib.linux-armv7l-2.7/qiime/support_files creating build/lib.linux-armv7l-2.7/qiime/support_files/css copying qiime/support_files/css/qiime_style.css -> build/lib.linux-armv7l-2.7/qiime/support_files/css creating build/lib.linux-armv7l-2.7/qiime/support_files/images copying qiime/support_files/images/qiime_header.png -> build/lib.linux-armv7l-2.7/qiime/support_files/images creating build/lib.linux-armv7l-2.7/qiime/support_files/jar copying qiime/support_files/jar/king.jar -> build/lib.linux-armv7l-2.7/qiime/support_files/jar creating build/lib.linux-armv7l-2.7/qiime/support_files/js copying qiime/support_files/js/histograms.js -> build/lib.linux-armv7l-2.7/qiime/support_files/js copying qiime/support_files/js/overlib.js -> build/lib.linux-armv7l-2.7/qiime/support_files/js copying qiime/support_files/js/otu_count_display.js -> build/lib.linux-armv7l-2.7/qiime/support_files/js copying qiime/support_files/js/jquery.js -> build/lib.linux-armv7l-2.7/qiime/support_files/js copying qiime/support_files/js/jquery.tablednd_0_5.js -> build/lib.linux-armv7l-2.7/qiime/support_files/js creating build/lib.linux-armv7l-2.7/qiime/support_files/R copying qiime/support_files/R/randomforests_util.r -> build/lib.linux-armv7l-2.7/qiime/support_files/R copying qiime/support_files/R/loaddata.r -> build/lib.linux-armv7l-2.7/qiime/support_files/R copying qiime/support_files/R/randomforests.r -> build/lib.linux-armv7l-2.7/qiime/support_files/R copying qiime/support_files/R/util.r -> build/lib.linux-armv7l-2.7/qiime/support_files/R creating build/lib.linux-armv7l-2.7/qiime/support_files/denoiser creating build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/probabilities.txt -> build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/FLX_error_profile.dat -> build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/Data creating build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_set_seqs.fna -> build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_flow_file.dat -> build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData running build_scripts creating build/scripts-2.7 copying and adjusting scripts/parallel_pick_otus_blast.py -> build/scripts-2.7 copying and adjusting scripts/beta_diversity_through_plots.py -> build/scripts-2.7 copying and adjusting scripts/jackknifed_beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/make_fastq.py -> build/scripts-2.7 copying and adjusting scripts/cluster_quality.py -> build/scripts-2.7 copying and adjusting scripts/check_id_map.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_histograms.py -> build/scripts-2.7 copying and adjusting scripts/convert_otu_table_to_unifrac_sample_mapping.py -> build/scripts-2.7 copying and adjusting scripts/pick_otus.py -> build/scripts-2.7 copying and adjusting scripts/denoiser_preprocess.py -> build/scripts-2.7 copying and adjusting scripts/parallel_pick_otus_uclust_ref.py -> build/scripts-2.7 copying and adjusting scripts/summarize_otu_by_cat.py -> build/scripts-2.7 copying and adjusting scripts/pool_by_metadata.py -> build/scripts-2.7 copying and adjusting scripts/tree_compare.py -> build/scripts-2.7 copying and adjusting scripts/denoiser_worker.py -> build/scripts-2.7 copying and adjusting scripts/make_prefs_file.py -> build/scripts-2.7 copying and adjusting scripts/single_rarefaction.py -> build/scripts-2.7 copying and adjusting scripts/submit_to_mgrast.py -> build/scripts-2.7 copying and adjusting scripts/pick_rep_set.py -> build/scripts-2.7 copying and adjusting scripts/beta_diversity_through_3d_plots.py -> build/scripts-2.7 copying and adjusting scripts/shared_phylotypes.py -> build/scripts-2.7 copying and adjusting scripts/trflp_file_to_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/merge_otu_tables.py -> build/scripts-2.7 copying and adjusting scripts/sort_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/filter_by_metadata.py -> build/scripts-2.7 copying and adjusting scripts/parallel_identify_chimeric_seqs.py -> build/scripts-2.7 copying and adjusting scripts/make_per_library_sff.py -> build/scripts-2.7 copying and adjusting scripts/filter_distance_matrix.py -> build/scripts-2.7 copying and adjusting scripts/distance_matrix_from_mapping.py -> build/scripts-2.7 copying and adjusting scripts/fix_arb_fasta.py -> build/scripts-2.7 copying and adjusting scripts/merge_mapping_files.py -> build/scripts-2.7 copying and adjusting scripts/exclude_seqs_by_blast.py -> build/scripts-2.7 copying and adjusting scripts/filter_alignment.py -> build/scripts-2.7 copying and adjusting scripts/merge_otu_maps.py -> build/scripts-2.7 copying and adjusting scripts/identify_chimeric_seqs.py -> build/scripts-2.7 copying and adjusting scripts/make_qiime_py_file.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_heatmap.py -> build/scripts-2.7 copying and adjusting scripts/make_rarefaction_plots.py -> build/scripts-2.7 copying and adjusting scripts/unweight_fasta.py -> build/scripts-2.7 copying and adjusting scripts/parallel_multiple_rarefactions.py -> build/scripts-2.7 copying and adjusting scripts/filter_tree.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs_torque.py -> build/scripts-2.7 copying and adjusting scripts/pick_reference_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/make_qiime_rst_file.py -> build/scripts-2.7 copying and adjusting scripts/make_3d_plots.py -> build/scripts-2.7 copying and adjusting scripts/denoise_wrapper.py -> build/scripts-2.7 copying and adjusting scripts/subsample_fasta.py -> build/scripts-2.7 copying and adjusting scripts/split_libraries.py -> build/scripts-2.7 copying and adjusting scripts/poller.py -> build/scripts-2.7 copying and adjusting scripts/summarize_taxa.py -> build/scripts-2.7 copying and adjusting scripts/summarize_taxa_through_plots.py -> build/scripts-2.7 copying and adjusting scripts/adjust_seq_orientation.py -> build/scripts-2.7 copying and adjusting scripts/filter_otus_by_sample.py -> build/scripts-2.7 copying and adjusting scripts/alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/principal_coordinates.py -> build/scripts-2.7 copying and adjusting scripts/split_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/filter_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/count_seqs.py -> build/scripts-2.7 copying and adjusting scripts/process_iseq.py -> build/scripts-2.7 copying and adjusting scripts/parallel_align_seqs_pynast.py -> build/scripts-2.7 copying and adjusting scripts/supervised_learning.py -> build/scripts-2.7 copying and adjusting scripts/plot_taxa_summary.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_boxplots.py -> build/scripts-2.7 copying and adjusting scripts/print_qiime_config.py -> build/scripts-2.7 copying and adjusting scripts/poller_example.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_network.py -> build/scripts-2.7 copying and adjusting scripts/make_2d_plots.py -> build/scripts-2.7 copying and adjusting scripts/alpha_rarefaction.py -> build/scripts-2.7 copying and adjusting scripts/upgma_cluster.py -> build/scripts-2.7 copying and adjusting scripts/compare_3d_plots.py -> build/scripts-2.7 copying and adjusting scripts/simsam.py -> build/scripts-2.7 copying and adjusting scripts/categorized_dist_scatterplot.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/denoiser.py -> build/scripts-2.7 copying and adjusting scripts/parallel_assign_taxonomy_rdp.py -> build/scripts-2.7 copying and adjusting scripts/pick_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs.py -> build/scripts-2.7 copying and adjusting scripts/parallel_alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/dissimilarity_mtx_stats.py -> build/scripts-2.7 copying and adjusting scripts/compare_distance_matrices.py -> build/scripts-2.7 copying and adjusting scripts/quality_scores_plot.py -> build/scripts-2.7 copying and adjusting scripts/compare_alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/nmds.py -> build/scripts-2.7 copying and adjusting scripts/ampliconnoise.py -> build/scripts-2.7 copying and adjusting scripts/parallel_assign_taxonomy_blast.py -> build/scripts-2.7 copying and adjusting scripts/collate_alpha.py -> build/scripts-2.7 copying and adjusting scripts/consensus_tree.py -> build/scripts-2.7 copying and adjusting scripts/plot_rank_abundance_graph.py -> build/scripts-2.7 copying and adjusting scripts/parallel_beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/plot_semivariogram.py -> build/scripts-2.7 copying and adjusting scripts/inflate_denoiser_output.py -> build/scripts-2.7 copying and adjusting scripts/extract_seqs_by_sample_id.py -> build/scripts-2.7 copying and adjusting scripts/truncate_fasta_qual_files.py -> build/scripts-2.7 copying and adjusting scripts/convert_unifrac_sample_mapping_to_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/otu_category_significance.py -> build/scripts-2.7 copying and adjusting scripts/make_tep.py -> build/scripts-2.7 copying and adjusting scripts/make_library_id_lists.py -> build/scripts-2.7 copying and adjusting scripts/split_libraries_fastq.py -> build/scripts-2.7 copying and adjusting scripts/beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/split_fasta_on_sample_ids.py -> build/scripts-2.7 copying and adjusting scripts/add_taxa.py -> build/scripts-2.7 copying and adjusting scripts/parallel_blast.py -> build/scripts-2.7 copying and adjusting scripts/process_qseq.py -> build/scripts-2.7 copying and adjusting scripts/filter_fasta.py -> build/scripts-2.7 copying and adjusting scripts/process_sff.py -> build/scripts-2.7 copying and adjusting scripts/trim_sff_primers.py -> build/scripts-2.7 copying and adjusting scripts/make_phylogeny.py -> build/scripts-2.7 copying and adjusting scripts/split_otu_table_by_taxonomy.py -> build/scripts-2.7 copying and adjusting scripts/multiple_rarefactions_even_depth.py -> build/scripts-2.7 copying and adjusting scripts/blast_wrapper.py -> build/scripts-2.7 copying and adjusting scripts/assign_taxonomy.py -> build/scripts-2.7 copying and adjusting scripts/beta_significance.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_heatmap_html.py -> build/scripts-2.7 copying and adjusting scripts/core_qiime_analyses.py -> build/scripts-2.7 copying and adjusting scripts/multiple_rarefactions.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_comparison_plots.py -> build/scripts-2.7 copying and adjusting scripts/align_seqs.py -> build/scripts-2.7 copying and adjusting scripts/per_library_stats.py -> build/scripts-2.7 copying and adjusting scripts/neighbor_joining.py -> build/scripts-2.7 copying and adjusting scripts/make_bootstrapped_tree.py -> build/scripts-2.7 copying and adjusting scripts/split_libraries_illumina.py -> build/scripts-2.7 copying and adjusting scripts/identify_missing_files.py -> build/scripts-2.7 copying and adjusting scripts/transform_coordinate_matrices.py -> build/scripts-2.7 copying scripts/ec2Clean -> build/scripts-2.7 copying scripts/ec2Dispatch -> build/scripts-2.7 changing mode of build/scripts-2.7/parallel_pick_otus_blast.py from 664 to 775 changing mode of build/scripts-2.7/beta_diversity_through_plots.py from 664 to 775 changing mode of build/scripts-2.7/jackknifed_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/make_fastq.py from 664 to 775 changing mode of build/scripts-2.7/cluster_quality.py from 664 to 775 changing mode of build/scripts-2.7/check_id_map.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_histograms.py from 664 to 775 changing mode of build/scripts-2.7/convert_otu_table_to_unifrac_sample_mapping.py from 664 to 775 changing mode of build/scripts-2.7/pick_otus.py from 664 to 775 changing mode of build/scripts-2.7/denoiser_preprocess.py from 664 to 775 changing mode of build/scripts-2.7/parallel_pick_otus_uclust_ref.py from 664 to 775 changing mode of build/scripts-2.7/summarize_otu_by_cat.py from 664 to 775 changing mode of build/scripts-2.7/pool_by_metadata.py from 664 to 775 changing mode of build/scripts-2.7/tree_compare.py from 664 to 775 changing mode of build/scripts-2.7/denoiser_worker.py from 664 to 775 changing mode of build/scripts-2.7/make_prefs_file.py from 664 to 775 changing mode of build/scripts-2.7/single_rarefaction.py from 664 to 775 changing mode of build/scripts-2.7/submit_to_mgrast.py from 664 to 775 changing mode of build/scripts-2.7/pick_rep_set.py from 664 to 775 changing mode of build/scripts-2.7/beta_diversity_through_3d_plots.py from 664 to 775 changing mode of build/scripts-2.7/shared_phylotypes.py from 664 to 775 changing mode of build/scripts-2.7/trflp_file_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/merge_otu_tables.py from 664 to 775 changing mode of build/scripts-2.7/sort_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/filter_by_metadata.py from 664 to 775 changing mode of build/scripts-2.7/parallel_identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.7/make_per_library_sff.py from 664 to 775 changing mode of build/scripts-2.7/filter_distance_matrix.py from 664 to 775 changing mode of build/scripts-2.7/distance_matrix_from_mapping.py from 664 to 775 changing mode of build/scripts-2.7/fix_arb_fasta.py from 664 to 775 changing mode of build/scripts-2.7/merge_mapping_files.py from 664 to 775 changing mode of build/scripts-2.7/exclude_seqs_by_blast.py from 664 to 775 changing mode of build/scripts-2.7/filter_alignment.py from 664 to 775 changing mode of build/scripts-2.7/merge_otu_maps.py from 664 to 775 changing mode of build/scripts-2.7/identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.7/make_qiime_py_file.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_heatmap.py from 664 to 775 changing mode of build/scripts-2.7/make_rarefaction_plots.py from 664 to 775 changing mode of build/scripts-2.7/unweight_fasta.py from 664 to 775 changing mode of build/scripts-2.7/parallel_multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.7/filter_tree.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs_torque.py from 664 to 775 changing mode of build/scripts-2.7/pick_reference_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/make_qiime_rst_file.py from 664 to 775 changing mode of build/scripts-2.7/make_3d_plots.py from 664 to 775 changing mode of build/scripts-2.7/denoise_wrapper.py from 664 to 775 changing mode of build/scripts-2.7/subsample_fasta.py from 664 to 775 changing mode of build/scripts-2.7/split_libraries.py from 664 to 775 changing mode of build/scripts-2.7/poller.py from 664 to 775 changing mode of build/scripts-2.7/summarize_taxa.py from 664 to 775 changing mode of build/scripts-2.7/summarize_taxa_through_plots.py from 664 to 775 changing mode of build/scripts-2.7/adjust_seq_orientation.py from 664 to 775 changing mode of build/scripts-2.7/filter_otus_by_sample.py from 664 to 775 changing mode of build/scripts-2.7/alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/principal_coordinates.py from 664 to 775 changing mode of build/scripts-2.7/split_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/filter_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/count_seqs.py from 664 to 775 changing mode of build/scripts-2.7/process_iseq.py from 664 to 775 changing mode of build/scripts-2.7/parallel_align_seqs_pynast.py from 664 to 775 changing mode of build/scripts-2.7/supervised_learning.py from 664 to 775 changing mode of build/scripts-2.7/plot_taxa_summary.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_boxplots.py from 664 to 775 changing mode of build/scripts-2.7/print_qiime_config.py from 664 to 775 changing mode of build/scripts-2.7/poller_example.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_network.py from 664 to 775 changing mode of build/scripts-2.7/make_2d_plots.py from 664 to 775 changing mode of build/scripts-2.7/alpha_rarefaction.py from 664 to 775 changing mode of build/scripts-2.7/upgma_cluster.py from 664 to 775 changing mode of build/scripts-2.7/compare_3d_plots.py from 664 to 775 changing mode of build/scripts-2.7/simsam.py from 664 to 775 changing mode of build/scripts-2.7/categorized_dist_scatterplot.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/denoiser.py from 664 to 775 changing mode of build/scripts-2.7/parallel_assign_taxonomy_rdp.py from 664 to 775 changing mode of build/scripts-2.7/pick_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs.py from 664 to 775 changing mode of build/scripts-2.7/parallel_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/dissimilarity_mtx_stats.py from 664 to 775 changing mode of build/scripts-2.7/compare_distance_matrices.py from 664 to 775 changing mode of build/scripts-2.7/quality_scores_plot.py from 664 to 775 changing mode of build/scripts-2.7/compare_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/nmds.py from 664 to 775 changing mode of build/scripts-2.7/ampliconnoise.py from 664 to 775 changing mode of build/scripts-2.7/parallel_assign_taxonomy_blast.py from 664 to 775 changing mode of build/scripts-2.7/collate_alpha.py from 664 to 775 changing mode of build/scripts-2.7/consensus_tree.py from 664 to 775 changing mode of build/scripts-2.7/plot_rank_abundance_graph.py from 664 to 775 changing mode of build/scripts-2.7/parallel_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/plot_semivariogram.py from 664 to 775 changing mode of build/scripts-2.7/inflate_denoiser_output.py from 664 to 775 changing mode of build/scripts-2.7/extract_seqs_by_sample_id.py from 664 to 775 changing mode of build/scripts-2.7/truncate_fasta_qual_files.py from 664 to 775 changing mode of build/scripts-2.7/convert_unifrac_sample_mapping_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/otu_category_significance.py from 664 to 775 changing mode of build/scripts-2.7/make_tep.py from 664 to 775 changing mode of build/scripts-2.7/make_library_id_lists.py from 664 to 775 changing mode of build/scripts-2.7/split_libraries_fastq.py from 664 to 775 changing mode of build/scripts-2.7/beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/split_fasta_on_sample_ids.py from 664 to 775 changing mode of build/scripts-2.7/add_taxa.py from 664 to 775 changing mode of build/scripts-2.7/parallel_blast.py from 664 to 775 changing mode of build/scripts-2.7/process_qseq.py from 664 to 775 changing mode of build/scripts-2.7/filter_fasta.py from 664 to 775 changing mode of build/scripts-2.7/process_sff.py from 664 to 775 changing mode of build/scripts-2.7/trim_sff_primers.py from 664 to 775 changing mode of build/scripts-2.7/make_phylogeny.py from 664 to 775 changing mode of build/scripts-2.7/split_otu_table_by_taxonomy.py from 664 to 775 changing mode of build/scripts-2.7/multiple_rarefactions_even_depth.py from 664 to 775 changing mode of build/scripts-2.7/blast_wrapper.py from 664 to 775 changing mode of build/scripts-2.7/assign_taxonomy.py from 664 to 775 changing mode of build/scripts-2.7/beta_significance.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_heatmap_html.py from 664 to 775 changing mode of build/scripts-2.7/core_qiime_analyses.py from 664 to 775 changing mode of build/scripts-2.7/multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_comparison_plots.py from 664 to 775 changing mode of build/scripts-2.7/align_seqs.py from 664 to 775 changing mode of build/scripts-2.7/per_library_stats.py from 664 to 775 changing mode of build/scripts-2.7/neighbor_joining.py from 664 to 775 changing mode of build/scripts-2.7/make_bootstrapped_tree.py from 664 to 775 changing mode of build/scripts-2.7/split_libraries_illumina.py from 664 to 775 changing mode of build/scripts-2.7/identify_missing_files.py from 664 to 775 changing mode of build/scripts-2.7/transform_coordinate_matrices.py from 664 to 775 make[1]: Entering directory `/«PKGBUILDDIR»/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.1.3 loading pickled environment... done building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/«PKGBUILDDIR»/doc' Local documentation built with Sphinx. Open to following path with a web browser: /«PKGBUILDDIR»/doc/_build/html/index.html dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running install running build running build_py running build_scripts running install_lib creating /«PKGBUILDDIR»/debian/tmp creating /«PKGBUILDDIR»/debian/tmp/usr creating /«PKGBUILDDIR»/debian/tmp/usr/lib creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/hamming.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/cluster_quality.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/beta_metrics.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/check_id_map.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_distance_histograms.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/pick_otus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/summarize_otu_by_cat.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/pool_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/tree_compare.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.6/qiime/support_files/R/randomforests_util.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.6/qiime/support_files/R/loaddata.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.6/qiime/support_files/R/randomforests.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.6/qiime/support_files/R/util.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/R creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/css copying build/lib.linux-armv7l-2.6/qiime/support_files/css/qiime_style.css -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/css creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.6/qiime/support_files/js/histograms.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.6/qiime/support_files/js/overlib.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.6/qiime/support_files/js/otu_count_display.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.6/qiime/support_files/js/jquery.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.6/qiime/support_files/js/jquery.tablednd_0_5.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.6/qiime/support_files/qiime_config -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/images copying build/lib.linux-armv7l-2.6/qiime/support_files/images/qiime_header.png -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/images creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/jar copying build/lib.linux-armv7l-2.6/qiime/support_files/jar/king.jar -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/jar creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData/test_set_seqs.fna -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData/test_flow_file.dat -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/TestData creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/Data/probabilities.txt -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.6/qiime/support_files/denoiser/Data/FLX_error_profile.dat -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.6/qiime/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/submit_to_mgrast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/pick_rep_set.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/shared_phylotypes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/filter_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_per_library_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/filter.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/distance_matrix_from_mapping.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/merge_mapping_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/exclude_seqs_by_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/hierarchical_cluster.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/filter_alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/pick_otus_uclust_ref.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/assign_taxonomy_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/pick_otus_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/assign_taxonomy_rdp.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/poller.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/align_seqs_pynast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/multiple_rarefactions.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/parallel/blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.6/qiime/barcode.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/parse.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_otu_heatmap.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_rarefaction_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/biplots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/workflow.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/denoise_wrapper.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/split_libraries.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/summarize_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/adjust_seq_orientation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/filter_otus_by_sample.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/principal_coordinates.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/filter_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/supervised_learning.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/plot_taxa_summary.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/group.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_otu_network.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_2d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/simsam.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/uclust.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/muscle.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/rdp_classifier.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/usearch.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/distribution_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/pycogent_backports/rdp_classifier20.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.6/qiime/categorized_dist_scatterplot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/quality_scores_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/compare_alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/nmds.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/collate_alpha.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/plot_rank_abundance_graph.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/plot_semivariogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/truncate_fasta_qual_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/otu_category_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/longitudinal_otu_category_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_library_id_lists.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/sort.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/split_libraries_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/add_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/colors.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/process_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/trim_sff_primers.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_phylogeny.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/assign_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_otu_heatmap_html.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/flowgram_filter.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/preprocess.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/flowgram_clustering.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/utils.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/cluster_utils.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/denoise_postprocess.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/make_cluster_jobs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/denoiser/denoise_worker.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.6/qiime/format.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/align_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/make_bootstrapped_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/split_libraries_illumina.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/golay.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime copying build/lib.linux-armv7l-2.6/qiime/transform_coordinate_matrices.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/qiime running install_scripts creating /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_pick_otus_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/beta_diversity_through_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/jackknifed_beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/cluster_quality.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/check_id_map.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_distance_histograms.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/convert_otu_table_to_unifrac_sample_mapping.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/pick_otus.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/ec2Clean -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/denoiser_preprocess.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_pick_otus_uclust_ref.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/summarize_otu_by_cat.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/pool_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/tree_compare.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/denoiser_worker.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_prefs_file.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/single_rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/submit_to_mgrast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/pick_rep_set.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/beta_diversity_through_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/shared_phylotypes.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/trflp_file_to_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/merge_otu_tables.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/sort_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/filter_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_per_library_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/filter_distance_matrix.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/distance_matrix_from_mapping.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/fix_arb_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/merge_mapping_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/exclude_seqs_by_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/filter_alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/merge_otu_maps.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_qiime_py_file.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_otu_heatmap.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_rarefaction_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/unweight_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_multiple_rarefactions.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/filter_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/start_parallel_jobs_torque.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/pick_reference_otus_through_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_qiime_rst_file.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/denoise_wrapper.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/subsample_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/split_libraries.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/poller.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/summarize_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/summarize_taxa_through_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/adjust_seq_orientation.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/filter_otus_by_sample.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/principal_coordinates.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/split_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/filter_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/count_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/process_iseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_align_seqs_pynast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/supervised_learning.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/plot_taxa_summary.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_distance_boxplots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/print_qiime_config.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/poller_example.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_otu_network.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_2d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/alpha_rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/upgma_cluster.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/compare_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/simsam.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/categorized_dist_scatterplot.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/denoiser.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_assign_taxonomy_rdp.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/pick_otus_through_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/start_parallel_jobs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/dissimilarity_mtx_stats.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/compare_distance_matrices.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/quality_scores_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/compare_alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/nmds.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/ampliconnoise.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_assign_taxonomy_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/collate_alpha.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/consensus_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/plot_rank_abundance_graph.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/plot_semivariogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/inflate_denoiser_output.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/extract_seqs_by_sample_id.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/truncate_fasta_qual_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/convert_unifrac_sample_mapping_to_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/otu_category_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_tep.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/ec2Dispatch -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_library_id_lists.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/split_libraries_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/split_fasta_on_sample_ids.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/add_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/parallel_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/process_qseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/filter_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/process_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/trim_sff_primers.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_phylogeny.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/split_otu_table_by_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/multiple_rarefactions_even_depth.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/blast_wrapper.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/assign_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/beta_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_otu_heatmap_html.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/core_qiime_analyses.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/multiple_rarefactions.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_distance_comparison_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/align_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/per_library_stats.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/neighbor_joining.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/make_bootstrapped_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/split_libraries_illumina.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/identify_missing_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.6/transform_coordinate_matrices.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_pick_otus_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_diversity_through_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/jackknifed_beta_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_fastq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/cluster_quality.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/check_id_map.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_distance_histograms.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/convert_otu_table_to_unifrac_sample_mapping.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_otus.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/ec2Clean to 755 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoiser_preprocess.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_pick_otus_uclust_ref.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/summarize_otu_by_cat.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pool_by_metadata.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/tree_compare.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoiser_worker.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_prefs_file.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/single_rarefaction.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/submit_to_mgrast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_rep_set.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_diversity_through_3d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/shared_phylotypes.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/trflp_file_to_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/merge_otu_tables.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/sort_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_by_metadata.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_identify_chimeric_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_per_library_sff.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_distance_matrix.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/distance_matrix_from_mapping.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/fix_arb_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/merge_mapping_files.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/exclude_seqs_by_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_alignment.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/merge_otu_maps.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/identify_chimeric_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_qiime_py_file.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_heatmap.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_rarefaction_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/unweight_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_multiple_rarefactions.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_tree.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/start_parallel_jobs_torque.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_reference_otus_through_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_qiime_rst_file.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_3d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoise_wrapper.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/subsample_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_libraries.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/poller.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/summarize_taxa.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/summarize_taxa_through_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/adjust_seq_orientation.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_otus_by_sample.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/alpha_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/principal_coordinates.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/count_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/process_iseq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_align_seqs_pynast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/supervised_learning.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/plot_taxa_summary.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_distance_boxplots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/print_qiime_config.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/poller_example.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_network.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_2d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/alpha_rarefaction.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/upgma_cluster.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/compare_3d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/simsam.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/categorized_dist_scatterplot.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoiser.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_assign_taxonomy_rdp.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_otus_through_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/start_parallel_jobs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_alpha_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/dissimilarity_mtx_stats.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/compare_distance_matrices.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/quality_scores_plot.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/compare_alpha_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/nmds.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/ampliconnoise.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_assign_taxonomy_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/collate_alpha.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/consensus_tree.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/plot_rank_abundance_graph.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_beta_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/plot_semivariogram.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/inflate_denoiser_output.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_seqs_by_sample_id.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/truncate_fasta_qual_files.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/convert_unifrac_sample_mapping_to_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/otu_category_significance.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_tep.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/ec2Dispatch to 755 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_library_id_lists.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_libraries_fastq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_fasta_on_sample_ids.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/add_taxa.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/process_qseq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/process_sff.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/trim_sff_primers.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_phylogeny.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_otu_table_by_taxonomy.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/multiple_rarefactions_even_depth.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/blast_wrapper.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/assign_taxonomy.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_significance.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_heatmap_html.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/core_qiime_analyses.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/multiple_rarefactions.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_distance_comparison_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/align_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/per_library_stats.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/neighbor_joining.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_bootstrapped_tree.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_libraries_illumina.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/identify_missing_files.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/transform_coordinate_matrices.py to 775 running install_data creating /«PKGBUILDDIR»/debian/tmp/usr/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/qiime/support_files creating /«PKGBUILDDIR»/debian/tmp/usr/qiime/support_files/denoiser creating /«PKGBUILDDIR»/debian/tmp/usr/qiime/support_files/denoiser/bin copying qiime/support_files/denoiser/bin/FlowgramAli_4frame -> /«PKGBUILDDIR»/debian/tmp/usr/qiime/support_files/denoiser/bin/ running install_egg_info Writing /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/QIIME-1.4.0.egg-info make[1]: Entering directory `/«PKGBUILDDIR»/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.1.3 loading pickled environment... done building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/«PKGBUILDDIR»/doc' Local documentation built with Sphinx. Open to following path with a web browser: /«PKGBUILDDIR»/doc/_build/html/index.html make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/«PKGBUILDDIR»/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running install running build running build_py running build_scripts running install_lib creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/hamming.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/cluster_quality.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/beta_metrics.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/check_id_map.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_distance_histograms.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/pick_otus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/summarize_otu_by_cat.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/pool_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/tree_compare.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.7/qiime/support_files/R/randomforests_util.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.7/qiime/support_files/R/loaddata.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.7/qiime/support_files/R/randomforests.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-armv7l-2.7/qiime/support_files/R/util.r -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/css copying build/lib.linux-armv7l-2.7/qiime/support_files/css/qiime_style.css -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/css creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.7/qiime/support_files/js/histograms.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.7/qiime/support_files/js/overlib.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.7/qiime/support_files/js/otu_count_display.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.7/qiime/support_files/js/jquery.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.7/qiime/support_files/js/jquery.tablednd_0_5.js -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-armv7l-2.7/qiime/support_files/qiime_config -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/images copying build/lib.linux-armv7l-2.7/qiime/support_files/images/qiime_header.png -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/images creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/jar copying build/lib.linux-armv7l-2.7/qiime/support_files/jar/king.jar -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/jar creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData/test_set_seqs.fna -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData/test_flow_file.dat -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/Data/probabilities.txt -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.7/qiime/support_files/denoiser/Data/FLX_error_profile.dat -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-armv7l-2.7/qiime/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/submit_to_mgrast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/pick_rep_set.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/shared_phylotypes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/filter_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_per_library_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/filter.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/distance_matrix_from_mapping.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/merge_mapping_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/exclude_seqs_by_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/hierarchical_cluster.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/filter_alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/pick_otus_uclust_ref.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/assign_taxonomy_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/pick_otus_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/assign_taxonomy_rdp.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/poller.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/align_seqs_pynast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/multiple_rarefactions.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/parallel/blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-armv7l-2.7/qiime/barcode.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/parse.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_otu_heatmap.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_rarefaction_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/biplots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/workflow.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/denoise_wrapper.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/split_libraries.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/summarize_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/adjust_seq_orientation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/filter_otus_by_sample.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/principal_coordinates.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/filter_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/supervised_learning.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/plot_taxa_summary.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/group.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_otu_network.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_2d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/simsam.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/uclust.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/muscle.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/rdp_classifier.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/usearch.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/distribution_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/pycogent_backports/rdp_classifier20.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-armv7l-2.7/qiime/categorized_dist_scatterplot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/quality_scores_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/compare_alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/nmds.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/collate_alpha.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/plot_rank_abundance_graph.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/plot_semivariogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/truncate_fasta_qual_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/otu_category_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/longitudinal_otu_category_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_library_id_lists.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/sort.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/split_libraries_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/add_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/colors.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/process_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/trim_sff_primers.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_phylogeny.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/assign_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_otu_heatmap_html.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/flowgram_filter.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/preprocess.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/flowgram_clustering.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/utils.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/cluster_utils.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/denoise_postprocess.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/make_cluster_jobs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/denoiser/denoise_worker.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-armv7l-2.7/qiime/format.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/align_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/make_bootstrapped_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/split_libraries_illumina.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/golay.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-armv7l-2.7/qiime/transform_coordinate_matrices.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/qiime running install_scripts copying build/scripts-2.7/parallel_pick_otus_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/beta_diversity_through_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/jackknifed_beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/cluster_quality.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/check_id_map.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_histograms.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/convert_otu_table_to_unifrac_sample_mapping.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/pick_otus.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/ec2Clean -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/denoiser_preprocess.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_pick_otus_uclust_ref.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/summarize_otu_by_cat.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/pool_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/tree_compare.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/denoiser_worker.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_prefs_file.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/single_rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/submit_to_mgrast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/pick_rep_set.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/beta_diversity_through_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/shared_phylotypes.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/trflp_file_to_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/merge_otu_tables.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/sort_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/filter_by_metadata.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_per_library_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/filter_distance_matrix.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/distance_matrix_from_mapping.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/fix_arb_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/merge_mapping_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/exclude_seqs_by_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/filter_alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/merge_otu_maps.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/identify_chimeric_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_qiime_py_file.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_heatmap.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_rarefaction_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/unweight_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_multiple_rarefactions.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/filter_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs_torque.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/pick_reference_otus_through_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_qiime_rst_file.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/denoise_wrapper.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/subsample_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/split_libraries.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/poller.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/summarize_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/summarize_taxa_through_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/adjust_seq_orientation.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/filter_otus_by_sample.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/principal_coordinates.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/split_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/filter_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/count_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/process_iseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_align_seqs_pynast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/supervised_learning.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/plot_taxa_summary.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_boxplots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/print_qiime_config.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/poller_example.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_network.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_2d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/alpha_rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/upgma_cluster.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/compare_3d_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/simsam.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/categorized_dist_scatterplot.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/denoiser.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_assign_taxonomy_rdp.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/pick_otus_through_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/dissimilarity_mtx_stats.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/compare_distance_matrices.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/quality_scores_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/compare_alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/nmds.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/ampliconnoise.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_assign_taxonomy_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/collate_alpha.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/consensus_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/plot_rank_abundance_graph.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/plot_semivariogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/inflate_denoiser_output.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/extract_seqs_by_sample_id.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/truncate_fasta_qual_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/convert_unifrac_sample_mapping_to_otu_table.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/otu_category_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_tep.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/ec2Dispatch -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_library_id_lists.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/split_libraries_fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/beta_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/split_fasta_on_sample_ids.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/add_taxa.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/parallel_blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/process_qseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/filter_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/process_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/trim_sff_primers.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_phylogeny.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/split_otu_table_by_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/multiple_rarefactions_even_depth.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/blast_wrapper.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/assign_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/beta_significance.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_heatmap_html.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/core_qiime_analyses.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/multiple_rarefactions.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_comparison_plots.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/align_seqs.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/per_library_stats.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/neighbor_joining.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/make_bootstrapped_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/split_libraries_illumina.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/identify_missing_files.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin copying build/scripts-2.7/transform_coordinate_matrices.py -> /«PKGBUILDDIR»/debian/tmp/usr/bin changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_pick_otus_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_diversity_through_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/jackknifed_beta_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_fastq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/cluster_quality.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/check_id_map.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_distance_histograms.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/convert_otu_table_to_unifrac_sample_mapping.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_otus.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/ec2Clean to 755 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoiser_preprocess.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_pick_otus_uclust_ref.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/summarize_otu_by_cat.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pool_by_metadata.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/tree_compare.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoiser_worker.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_prefs_file.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/single_rarefaction.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/submit_to_mgrast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_rep_set.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_diversity_through_3d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/shared_phylotypes.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/trflp_file_to_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/merge_otu_tables.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/sort_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_by_metadata.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_identify_chimeric_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_per_library_sff.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_distance_matrix.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/distance_matrix_from_mapping.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/fix_arb_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/merge_mapping_files.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/exclude_seqs_by_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_alignment.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/merge_otu_maps.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/identify_chimeric_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_qiime_py_file.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_heatmap.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_rarefaction_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/unweight_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_multiple_rarefactions.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_tree.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/start_parallel_jobs_torque.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_reference_otus_through_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_qiime_rst_file.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_3d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoise_wrapper.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/subsample_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_libraries.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/poller.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/summarize_taxa.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/summarize_taxa_through_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/adjust_seq_orientation.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_otus_by_sample.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/alpha_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/principal_coordinates.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/count_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/process_iseq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_align_seqs_pynast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/supervised_learning.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/plot_taxa_summary.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_distance_boxplots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/print_qiime_config.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/poller_example.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_network.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_2d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/alpha_rarefaction.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/upgma_cluster.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/compare_3d_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/simsam.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/categorized_dist_scatterplot.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/denoiser.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_assign_taxonomy_rdp.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/pick_otus_through_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/start_parallel_jobs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_alpha_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/dissimilarity_mtx_stats.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/compare_distance_matrices.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/quality_scores_plot.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/compare_alpha_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/nmds.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/ampliconnoise.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_assign_taxonomy_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/collate_alpha.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/consensus_tree.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/plot_rank_abundance_graph.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_beta_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/plot_semivariogram.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/inflate_denoiser_output.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_seqs_by_sample_id.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/truncate_fasta_qual_files.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/convert_unifrac_sample_mapping_to_otu_table.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/otu_category_significance.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_tep.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/ec2Dispatch to 755 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_library_id_lists.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_libraries_fastq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_diversity.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_fasta_on_sample_ids.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/add_taxa.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/parallel_blast.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/process_qseq.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/filter_fasta.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/process_sff.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/trim_sff_primers.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_phylogeny.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_otu_table_by_taxonomy.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/multiple_rarefactions_even_depth.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/blast_wrapper.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/assign_taxonomy.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/beta_significance.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_otu_heatmap_html.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/core_qiime_analyses.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/multiple_rarefactions.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_distance_comparison_plots.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/align_seqs.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/per_library_stats.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/neighbor_joining.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/make_bootstrapped_tree.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/split_libraries_illumina.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/identify_missing_files.py to 775 changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/transform_coordinate_matrices.py to 775 running install_data copying qiime/support_files/denoiser/bin/FlowgramAli_4frame -> /«PKGBUILDDIR»/debian/tmp/usr/qiime/support_files/denoiser/bin/ running install_egg_info Writing /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/QIIME-1.4.0.egg-info make[1]: Entering directory `/«PKGBUILDDIR»/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.1.3 loading pickled environment... done building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/«PKGBUILDDIR»/doc' Local documentation built with Sphinx. Open to following path with a web browser: /«PKGBUILDDIR»/doc/_build/html/index.html debian/rules override_dh_install make[1]: Entering directory `/«PKGBUILDDIR»' dh_install chmod a+x debian/qiime/usr/lib/qiime/bin/uclust chmod -R a+rX debian/qiime/usr/lib/qiime/shell make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/«PKGBUILDDIR»' dh_installchangelogs ChangeLog make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_python2 -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/«PKGBUILDDIR»' dh_compress \ --exclude=.js \ --exclude=.sff \ --exclude=.qual \ --exclude=.fna \ --exclude=.fna.txt make[1]: Leaving directory `/«PKGBUILDDIR»' dh_fixperms -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: warning: 'debian/qiime/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `qiime' in `../qiime_1.4.0-2_armhf.deb'. dpkg-genchanges -B -mbuildd >../qiime_1.4.0-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build qiime-1.4.0 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120524-1202 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ qiime_1.4.0-2_armhf.changes: ──────────────────────────── Format: 1.8 Date: Mon, 16 Apr 2012 15:39:02 +0200 Source: qiime Binary: qiime qiime-doc Architecture: armhf Version: 1.4.0-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: qiime - Quantitative Insights Into Microbial Ecology qiime-doc - Quantitative Insights Into Microbial Ecology (tutorial) Closes: 668999 Changes: qiime (1.4.0-2) unstable; urgency=low . * debian/qiime.install: Include *.py files Closes: #668999 Checksums-Sha1: da90085474d93ecaeafe2c4c199b9e9389dd3ac8 1720342 qiime_1.4.0-2_armhf.deb Checksums-Sha256: cdce2b4fe8dffbe4fb00c5da6f57b42b153e072380b9675a70dcf4faab9c2b00 1720342 qiime_1.4.0-2_armhf.deb Files: 43b83567254130ca9867adf11f621077 1720342 science extra qiime_1.4.0-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ qiime_1.4.0-2_armhf.deb ─────────────────────── new debian package, version 2.0. size 1720342 bytes: control archive= 8749 bytes. 24 bytes, 1 lines conffiles 2482 bytes, 49 lines control 18614 bytes, 241 lines md5sums 243 bytes, 13 lines * postinst #!/bin/sh 247 bytes, 14 lines * prerm #!/bin/sh Package: qiime Version: 1.4.0-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 9158 Depends: libc6 (>= 2.13-28), libffi5 (>= 3.0.9), libgcc1 (>= 1:4.4.0), libgmp10, python2.7 | python2.6, python (>= 2.6.6-7~), python (<< 2.8), python-pynast (>= 1.1) | pynast (>= 1.1), python-cogent (>= 1.5.1) Recommends: blast2 | blast+-legacy, cd-hit, rdp-classifier, chimeraslayer, muscle, infernal, fasttree, ampliconnoise, python-matplotlib, python-numpy Suggests: t-coffee, cytoscape Conflicts: denoiser Replaces: denoiser Provides: denoiser Section: science Priority: extra Homepage: http://www.qiime.org/ Description: Quantitative Insights Into Microbial Ecology QIIME (canonically pronounced ‘Chime’) is a pipeline for performing microbial community analysis that integrates many third party tools which have become standard in the field. A standard QIIME analysis begins with sequence data from one or more sequencing platforms, including * Sanger, * Roche/454, and * Illumina GAIIx. With all the underlying tools installed, of which not all are yet available in Debian (or any other Linux distribution), QIIME can perform * library de-multiplexing and quality filtering; * denoising with PyroNoise; * OTU and representative set picking with uclust, cdhit, mothur, BLAST, or other tools; * taxonomy assignment with BLAST or the RDP classifier; * sequence alignment with PyNAST, muscle, infernal, or other tools; * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools; * alpha diversity and rarefaction, including visualization of results, using over 20 metrics including Phylogenetic Diversity, chao1, and observed species; * beta diversity and rarefaction, including visualization of results, using over 25 metrics including weighted and unweighted UniFrac, Euclidean distance, and Bray-Curtis; * summarization and visualization of taxonomic composition of samples using pie charts and histograms and many other features. . QIIME includes parallelization capabilities for many of the computationally intensive steps. By default, these are configured to utilize a mutli-core environment, and are easily configured to run in a cluster environment. QIIME is built in Python using the open-source PyCogent toolkit. It makes extensive use of unit tests, and is highly modular to facilitate custom analyses. 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./etc/qiime/qiime_config lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/hamming.py -> ../../../../share/pyshared/qiime/hamming.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_fastq.py -> ../../../../share/pyshared/qiime/make_fastq.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/cluster_quality.py -> ../../../../share/pyshared/qiime/cluster_quality.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/beta_metrics.py -> ../../../../share/pyshared/qiime/beta_metrics.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/check_id_map.py -> ../../../../share/pyshared/qiime/check_id_map.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_distance_histograms.py -> ../../../../share/pyshared/qiime/make_distance_histograms.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pick_otus.py -> ../../../../share/pyshared/qiime/pick_otus.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/summarize_otu_by_cat.py -> ../../../../share/pyshared/qiime/summarize_otu_by_cat.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pool_by_metadata.py -> ../../../../share/pyshared/qiime/pool_by_metadata.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/tree_compare.py -> ../../../../share/pyshared/qiime/tree_compare.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/__init__.py -> ../../../../share/pyshared/qiime/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/submit_to_mgrast.py -> ../../../../share/pyshared/qiime/submit_to_mgrast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pick_rep_set.py -> ../../../../share/pyshared/qiime/pick_rep_set.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/shared_phylotypes.py -> ../../../../share/pyshared/qiime/shared_phylotypes.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/filter_by_metadata.py -> ../../../../share/pyshared/qiime/filter_by_metadata.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_per_library_sff.py -> ../../../../share/pyshared/qiime/make_per_library_sff.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/filter.py -> ../../../../share/pyshared/qiime/filter.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/util.py -> ../../../../share/pyshared/qiime/util.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/distance_matrix_from_mapping.py -> ../../../../share/pyshared/qiime/distance_matrix_from_mapping.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/merge_mapping_files.py -> ../../../../share/pyshared/qiime/merge_mapping_files.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/exclude_seqs_by_blast.py -> ../../../../share/pyshared/qiime/exclude_seqs_by_blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/hierarchical_cluster.py -> ../../../../share/pyshared/qiime/hierarchical_cluster.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/filter_alignment.py -> ../../../../share/pyshared/qiime/filter_alignment.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/pick_otus_uclust_ref.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_uclust_ref.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/__init__.py -> ../../../../../share/pyshared/qiime/parallel/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/assign_taxonomy_blast.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/util.py -> ../../../../../share/pyshared/qiime/parallel/util.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/pick_otus_blast.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/assign_taxonomy_rdp.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_rdp.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/identify_chimeric_seqs.py -> ../../../../../share/pyshared/qiime/parallel/identify_chimeric_seqs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/poller.py -> ../../../../../share/pyshared/qiime/parallel/poller.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/alpha_diversity.py -> ../../../../../share/pyshared/qiime/parallel/alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/align_seqs_pynast.py -> ../../../../../share/pyshared/qiime/parallel/align_seqs_pynast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/beta_diversity.py -> ../../../../../share/pyshared/qiime/parallel/beta_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/multiple_rarefactions.py -> ../../../../../share/pyshared/qiime/parallel/multiple_rarefactions.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parallel/blast.py -> ../../../../../share/pyshared/qiime/parallel/blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/barcode.py -> ../../../../share/pyshared/qiime/barcode.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/parse.py -> ../../../../share/pyshared/qiime/parse.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/identify_chimeric_seqs.py -> ../../../../share/pyshared/qiime/identify_chimeric_seqs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_otu_heatmap.py -> ../../../../share/pyshared/qiime/make_otu_heatmap.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_rarefaction_plots.py -> ../../../../share/pyshared/qiime/make_rarefaction_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/biplots.py -> ../../../../share/pyshared/qiime/biplots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/workflow.py -> ../../../../share/pyshared/qiime/workflow.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_3d_plots.py -> ../../../../share/pyshared/qiime/make_3d_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoise_wrapper.py -> ../../../../share/pyshared/qiime/denoise_wrapper.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/split_libraries.py -> ../../../../share/pyshared/qiime/split_libraries.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/summarize_taxa.py -> ../../../../share/pyshared/qiime/summarize_taxa.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/adjust_seq_orientation.py -> ../../../../share/pyshared/qiime/adjust_seq_orientation.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/filter_otus_by_sample.py -> ../../../../share/pyshared/qiime/filter_otus_by_sample.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/alpha_diversity.py -> ../../../../share/pyshared/qiime/alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/principal_coordinates.py -> ../../../../share/pyshared/qiime/principal_coordinates.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/filter_otu_table.py -> ../../../../share/pyshared/qiime/filter_otu_table.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/supervised_learning.py -> ../../../../share/pyshared/qiime/supervised_learning.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/plot_taxa_summary.py -> ../../../../share/pyshared/qiime/plot_taxa_summary.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/group.py -> ../../../../share/pyshared/qiime/group.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_otu_network.py -> ../../../../share/pyshared/qiime/make_otu_network.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_2d_plots.py -> ../../../../share/pyshared/qiime/make_2d_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/simsam.py -> ../../../../share/pyshared/qiime/simsam.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/__init__.py -> ../../../../../share/pyshared/qiime/pycogent_backports/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/uclust.py -> ../../../../../share/pyshared/qiime/pycogent_backports/uclust.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/muscle.py -> ../../../../../share/pyshared/qiime/pycogent_backports/muscle.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/rdp_classifier.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rdp_classifier.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/usearch.py -> ../../../../../share/pyshared/qiime/pycogent_backports/usearch.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/tree.py -> ../../../../../share/pyshared/qiime/pycogent_backports/tree.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/distribution_plots.py -> ../../../../../share/pyshared/qiime/pycogent_backports/distribution_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/rdp_classifier20.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rdp_classifier20.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/categorized_dist_scatterplot.py -> ../../../../share/pyshared/qiime/categorized_dist_scatterplot.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_otu_table.py -> ../../../../share/pyshared/qiime/make_otu_table.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/rarefaction.py -> ../../../../share/pyshared/qiime/rarefaction.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/quality_scores_plot.py -> ../../../../share/pyshared/qiime/quality_scores_plot.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/compare_alpha_diversity.py -> ../../../../share/pyshared/qiime/compare_alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/nmds.py -> ../../../../share/pyshared/qiime/nmds.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/collate_alpha.py -> ../../../../share/pyshared/qiime/collate_alpha.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/plot_rank_abundance_graph.py -> ../../../../share/pyshared/qiime/plot_rank_abundance_graph.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/plot_semivariogram.py -> ../../../../share/pyshared/qiime/plot_semivariogram.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/truncate_fasta_qual_files.py -> ../../../../share/pyshared/qiime/truncate_fasta_qual_files.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/otu_category_significance.py -> ../../../../share/pyshared/qiime/otu_category_significance.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/longitudinal_otu_category_significance.py -> ../../../../share/pyshared/qiime/longitudinal_otu_category_significance.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_library_id_lists.py -> ../../../../share/pyshared/qiime/make_library_id_lists.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/sort.py -> ../../../../share/pyshared/qiime/sort.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/split_libraries_fastq.py -> ../../../../share/pyshared/qiime/split_libraries_fastq.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/beta_diversity.py -> ../../../../share/pyshared/qiime/beta_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/add_taxa.py -> ../../../../share/pyshared/qiime/add_taxa.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/colors.py -> ../../../../share/pyshared/qiime/colors.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/process_sff.py -> ../../../../share/pyshared/qiime/process_sff.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/trim_sff_primers.py -> ../../../../share/pyshared/qiime/trim_sff_primers.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_phylogeny.py -> ../../../../share/pyshared/qiime/make_phylogeny.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/assign_taxonomy.py -> ../../../../share/pyshared/qiime/assign_taxonomy.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_otu_heatmap_html.py -> ../../../../share/pyshared/qiime/make_otu_heatmap_html.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/flowgram_filter.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_filter.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/preprocess.py -> ../../../../../share/pyshared/qiime/denoiser/preprocess.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/flowgram_clustering.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_clustering.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/__init__.py -> ../../../../../share/pyshared/qiime/denoiser/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/utils.py -> ../../../../../share/pyshared/qiime/denoiser/utils.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/cluster_utils.py -> ../../../../../share/pyshared/qiime/denoiser/cluster_utils.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/denoise_postprocess.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_postprocess.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/make_cluster_jobs.py -> ../../../../../share/pyshared/qiime/denoiser/make_cluster_jobs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/denoiser/denoise_worker.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_worker.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/format.py -> ../../../../share/pyshared/qiime/format.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/align_seqs.py -> ../../../../share/pyshared/qiime/align_seqs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/make_bootstrapped_tree.py -> ../../../../share/pyshared/qiime/make_bootstrapped_tree.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/split_libraries_illumina.py -> ../../../../share/pyshared/qiime/split_libraries_illumina.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/golay.py -> ../../../../share/pyshared/qiime/golay.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.7/dist-packages/qiime/transform_coordinate_matrices.py -> ../../../../share/pyshared/qiime/transform_coordinate_matrices.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/hamming.py -> ../../../../share/pyshared/qiime/hamming.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_fastq.py -> ../../../../share/pyshared/qiime/make_fastq.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/cluster_quality.py -> ../../../../share/pyshared/qiime/cluster_quality.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/beta_metrics.py -> ../../../../share/pyshared/qiime/beta_metrics.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/check_id_map.py -> ../../../../share/pyshared/qiime/check_id_map.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_distance_histograms.py -> ../../../../share/pyshared/qiime/make_distance_histograms.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pick_otus.py -> ../../../../share/pyshared/qiime/pick_otus.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/summarize_otu_by_cat.py -> ../../../../share/pyshared/qiime/summarize_otu_by_cat.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pool_by_metadata.py -> ../../../../share/pyshared/qiime/pool_by_metadata.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/tree_compare.py -> ../../../../share/pyshared/qiime/tree_compare.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/__init__.py -> ../../../../share/pyshared/qiime/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/submit_to_mgrast.py -> ../../../../share/pyshared/qiime/submit_to_mgrast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pick_rep_set.py -> ../../../../share/pyshared/qiime/pick_rep_set.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/shared_phylotypes.py -> ../../../../share/pyshared/qiime/shared_phylotypes.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/filter_by_metadata.py -> ../../../../share/pyshared/qiime/filter_by_metadata.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_per_library_sff.py -> ../../../../share/pyshared/qiime/make_per_library_sff.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/filter.py -> ../../../../share/pyshared/qiime/filter.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/util.py -> ../../../../share/pyshared/qiime/util.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/distance_matrix_from_mapping.py -> ../../../../share/pyshared/qiime/distance_matrix_from_mapping.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/merge_mapping_files.py -> ../../../../share/pyshared/qiime/merge_mapping_files.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/exclude_seqs_by_blast.py -> ../../../../share/pyshared/qiime/exclude_seqs_by_blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/hierarchical_cluster.py -> ../../../../share/pyshared/qiime/hierarchical_cluster.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/filter_alignment.py -> ../../../../share/pyshared/qiime/filter_alignment.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/pick_otus_uclust_ref.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_uclust_ref.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/__init__.py -> ../../../../../share/pyshared/qiime/parallel/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/assign_taxonomy_blast.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/util.py -> ../../../../../share/pyshared/qiime/parallel/util.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/pick_otus_blast.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/assign_taxonomy_rdp.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_rdp.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/identify_chimeric_seqs.py -> ../../../../../share/pyshared/qiime/parallel/identify_chimeric_seqs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/poller.py -> ../../../../../share/pyshared/qiime/parallel/poller.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/alpha_diversity.py -> ../../../../../share/pyshared/qiime/parallel/alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/align_seqs_pynast.py -> ../../../../../share/pyshared/qiime/parallel/align_seqs_pynast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/beta_diversity.py -> ../../../../../share/pyshared/qiime/parallel/beta_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/multiple_rarefactions.py -> ../../../../../share/pyshared/qiime/parallel/multiple_rarefactions.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parallel/blast.py -> ../../../../../share/pyshared/qiime/parallel/blast.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/barcode.py -> ../../../../share/pyshared/qiime/barcode.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/parse.py -> ../../../../share/pyshared/qiime/parse.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/identify_chimeric_seqs.py -> ../../../../share/pyshared/qiime/identify_chimeric_seqs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_otu_heatmap.py -> ../../../../share/pyshared/qiime/make_otu_heatmap.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_rarefaction_plots.py -> ../../../../share/pyshared/qiime/make_rarefaction_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/biplots.py -> ../../../../share/pyshared/qiime/biplots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/workflow.py -> ../../../../share/pyshared/qiime/workflow.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_3d_plots.py -> ../../../../share/pyshared/qiime/make_3d_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoise_wrapper.py -> ../../../../share/pyshared/qiime/denoise_wrapper.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/split_libraries.py -> ../../../../share/pyshared/qiime/split_libraries.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/summarize_taxa.py -> ../../../../share/pyshared/qiime/summarize_taxa.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/adjust_seq_orientation.py -> ../../../../share/pyshared/qiime/adjust_seq_orientation.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/filter_otus_by_sample.py -> ../../../../share/pyshared/qiime/filter_otus_by_sample.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/alpha_diversity.py -> ../../../../share/pyshared/qiime/alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/principal_coordinates.py -> ../../../../share/pyshared/qiime/principal_coordinates.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/filter_otu_table.py -> ../../../../share/pyshared/qiime/filter_otu_table.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/supervised_learning.py -> ../../../../share/pyshared/qiime/supervised_learning.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/plot_taxa_summary.py -> ../../../../share/pyshared/qiime/plot_taxa_summary.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/group.py -> ../../../../share/pyshared/qiime/group.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_otu_network.py -> ../../../../share/pyshared/qiime/make_otu_network.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_2d_plots.py -> ../../../../share/pyshared/qiime/make_2d_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/simsam.py -> ../../../../share/pyshared/qiime/simsam.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/__init__.py -> ../../../../../share/pyshared/qiime/pycogent_backports/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/uclust.py -> ../../../../../share/pyshared/qiime/pycogent_backports/uclust.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/muscle.py -> ../../../../../share/pyshared/qiime/pycogent_backports/muscle.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/rdp_classifier.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rdp_classifier.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/usearch.py -> ../../../../../share/pyshared/qiime/pycogent_backports/usearch.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/tree.py -> ../../../../../share/pyshared/qiime/pycogent_backports/tree.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/distribution_plots.py -> ../../../../../share/pyshared/qiime/pycogent_backports/distribution_plots.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/pycogent_backports/rdp_classifier20.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rdp_classifier20.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/categorized_dist_scatterplot.py -> ../../../../share/pyshared/qiime/categorized_dist_scatterplot.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_otu_table.py -> ../../../../share/pyshared/qiime/make_otu_table.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/rarefaction.py -> ../../../../share/pyshared/qiime/rarefaction.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/quality_scores_plot.py -> ../../../../share/pyshared/qiime/quality_scores_plot.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/compare_alpha_diversity.py -> ../../../../share/pyshared/qiime/compare_alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/nmds.py -> ../../../../share/pyshared/qiime/nmds.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/collate_alpha.py -> ../../../../share/pyshared/qiime/collate_alpha.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/plot_rank_abundance_graph.py -> ../../../../share/pyshared/qiime/plot_rank_abundance_graph.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/plot_semivariogram.py -> ../../../../share/pyshared/qiime/plot_semivariogram.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/truncate_fasta_qual_files.py -> ../../../../share/pyshared/qiime/truncate_fasta_qual_files.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/otu_category_significance.py -> ../../../../share/pyshared/qiime/otu_category_significance.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/longitudinal_otu_category_significance.py -> ../../../../share/pyshared/qiime/longitudinal_otu_category_significance.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_library_id_lists.py -> ../../../../share/pyshared/qiime/make_library_id_lists.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/sort.py -> ../../../../share/pyshared/qiime/sort.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/split_libraries_fastq.py -> ../../../../share/pyshared/qiime/split_libraries_fastq.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/beta_diversity.py -> ../../../../share/pyshared/qiime/beta_diversity.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/add_taxa.py -> ../../../../share/pyshared/qiime/add_taxa.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/colors.py -> ../../../../share/pyshared/qiime/colors.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/process_sff.py -> ../../../../share/pyshared/qiime/process_sff.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/trim_sff_primers.py -> ../../../../share/pyshared/qiime/trim_sff_primers.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_phylogeny.py -> ../../../../share/pyshared/qiime/make_phylogeny.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/assign_taxonomy.py -> ../../../../share/pyshared/qiime/assign_taxonomy.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_otu_heatmap_html.py -> ../../../../share/pyshared/qiime/make_otu_heatmap_html.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/flowgram_filter.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_filter.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/preprocess.py -> ../../../../../share/pyshared/qiime/denoiser/preprocess.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/flowgram_clustering.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_clustering.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/__init__.py -> ../../../../../share/pyshared/qiime/denoiser/__init__.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/utils.py -> ../../../../../share/pyshared/qiime/denoiser/utils.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/cluster_utils.py -> ../../../../../share/pyshared/qiime/denoiser/cluster_utils.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/denoise_postprocess.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_postprocess.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/make_cluster_jobs.py -> ../../../../../share/pyshared/qiime/denoiser/make_cluster_jobs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/denoiser/denoise_worker.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_worker.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/format.py -> ../../../../share/pyshared/qiime/format.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/align_seqs.py -> ../../../../share/pyshared/qiime/align_seqs.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/make_bootstrapped_tree.py -> ../../../../share/pyshared/qiime/make_bootstrapped_tree.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/split_libraries_illumina.py -> ../../../../share/pyshared/qiime/split_libraries_illumina.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/golay.py -> ../../../../share/pyshared/qiime/golay.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/lib/python2.6/dist-packages/qiime/transform_coordinate_matrices.py -> ../../../../share/pyshared/qiime/transform_coordinate_matrices.py lrwxrwxrwx root/root 0 2012-05-24 12:01 ./usr/bin/denoiser -> qiime ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* docutils-common* file* fontconfig* fontconfig-config* fonts-lyx* gettext* gettext-base* ghc* ghc6* gir1.2-glib-2.0* groff-base* html2text* intltool-debian* libatk1.0-0* libatk1.0-data* libavahi-client3* libavahi-common-data* libavahi-common3* libblas3gf* libbsd-dev* libbsd0* libcairo2* libcroco3* libcups2* libdatrie1* libdb4.8* libdbus-1-3* libexpat1* libexpat1-dev* libffi-dev* libffi5* libfontconfig1* libfreetype6* libgcrypt11* libgdk-pixbuf2.0-0* libgdk-pixbuf2.0-common* libgfortran3* libgirepository-1.0-1* libglib2.0-0* libgmp-dev* libgmpxx4ldbl* libgnutls26* libgpg-error0* libgssapi-krb5-2* libgtk2.0-0* libgtk2.0-common* libjasper1* libjbig0* libjpeg8* libjs-jquery* libjs-sphinxdoc* libjs-underscore* libk5crypto3* libkeyutils1* libkrb5-3* libkrb5support0* liblapack3gf* libmagic1* libp11-kit0* libpango1.0-0* libpcre3* libpipeline1* libpixman-1-0* libpng12-0* libpython2.6* libpython2.7* libsqlite3-0* libssl-dev* libssl1.0.0* libtasn1-3* libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxcomposite1* libxcursor1* libxdamage1* libxdmcp6* libxext6* libxfixes3* libxft2* libxi6* libxinerama1* libxml2* libxrandr2* libxrender1* libxss1* man-db* mime-support* po-debconf* python* python-all* python-all-dev* python-cairo* python-cogent* python-dateutil* python-dev* python-docutils* python-gi* python-gobject* python-gobject-2* python-jinja2* python-markupsafe* python-matplotlib* python-matplotlib-data* python-minimal* python-numpy* python-pygments* python-pyparsing* python-roman* python-sphinx* python-support* python-tz* python2.6* python2.6-dev* python2.6-minimal* python2.7* python2.7-dev* python2.7-minimal* sbuild-build-depends-core-dummy* sbuild-build-depends-qiime-dummy* sgml-base* shared-mime-info* sphinx-common* tcl8.5* tk8.5* ttf-dejavu-core* x11-common* xml-core* zlib1g-dev* 0 upgraded, 0 newly installed, 138 to remove and 22 not upgraded. After this operation, 485 MB disk space will be freed. (Reading database ... 21036 files and directories currently installed.) Removing sbuild-build-depends-qiime-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing python-sphinx ... Removing python-docutils ... Removing docutils-common ... Purging configuration files for docutils-common ... Removing file ... Removing python-matplotlib ... Removing libgtk2.0-0:armhf ... Purging configuration files for libgtk2.0-0:armhf ... Removing libpango1.0-0:armhf ... Purging configuration files for libpango1.0-0:armhf ... Removing fontconfig ... Purging configuration files for fontconfig ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing libxft2:armhf ... Purging configuration files for libxft2:armhf ... Removing python-cairo ... Removing libcairo2:armhf ... 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Purging configuration files for libavahi-client3:armhf ... Removing libavahi-common3:armhf ... Purging configuration files for libavahi-common3:armhf ... Removing libavahi-common-data:armhf ... Removing python-cogent ... Removing python-numpy ... Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing libbsd-dev ... Removing libbsd0:armhf ... Purging configuration files for libbsd0:armhf ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libthai0:armhf ... Purging configuration files for libthai0:armhf ... Removing libdatrie1:armhf ... Purging configuration files for libdatrie1:armhf ... Removing python-all-dev ... Removing python2.6-dev ... Removing python-tz ... Removing python-pygments ... Purging configuration files for python-pygments ... Removing python-jinja2 ... Removing python-markupsafe ... Removing python-gobject-2 ... 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Purging configuration files for libp11-kit0:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libpixman-1-0:armhf ... Purging configuration files for libpixman-1-0:armhf ... Removing libpng12-0:armhf ... Purging configuration files for libpng12-0:armhf ... Removing libsqlite3-0:armhf ... Purging configuration files for libsqlite3-0:armhf ... Removing libssl-dev ... Removing python-minimal ... Removing python2.7-minimal ... Purging configuration files for python2.7-minimal ... Removing python2.6-minimal ... Purging configuration files for python2.6-minimal ... Removing libssl1.0.0:armhf ... Purging configuration files for libssl1.0.0:armhf ... Removing libtasn1-3:armhf ... Purging configuration files for libtasn1-3:armhf ... Removing libthai-data ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxss1:armhf ... Purging configuration files for libxss1:armhf ... Removing libxrandr2:armhf ... Purging configuration files for libxrandr2:armhf ... Removing libxcursor1:armhf ... Purging configuration files for libxcursor1:armhf ... Removing libxrender1:armhf ... Purging configuration files for libxrender1:armhf ... Removing libxinerama1:armhf ... Purging configuration files for libxinerama1:armhf ... Removing libxi6:armhf ... Purging configuration files for libxi6:armhf ... Removing libxfixes3:armhf ... Purging configuration files for libxfixes3:armhf ... Removing libxext6:armhf ... Purging configuration files for libxext6:armhf ... Removing libxdamage1:armhf ... Purging configuration files for libxdamage1:armhf ... Removing libxcomposite1:armhf ... Purging configuration files for libxcomposite1:armhf ... Removing libx11-6:armhf ... Purging configuration files for libx11-6:armhf ... Removing libx11-data ... Removing libxcb-shm0:armhf ... Purging configuration files for libxcb-shm0:armhf ... Removing libxcb-render0:armhf ... Purging configuration files for libxcb-render0:armhf ... Removing libxcb1:armhf ... Purging configuration files for libxcb1:armhf ... Removing libxau6:armhf ... Purging configuration files for libxau6:armhf ... Removing libxdmcp6:armhf ... Purging configuration files for libxdmcp6:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing mime-support ... Purging configuration files for mime-support ... Removing sbuild-build-depends-core-dummy ... Removing xml-core ... Purging configuration files for xml-core ... dpkg: warning: while removing xml-core, directory '/etc/sgml' not empty so not removed. Removing sgml-base ... Purging configuration files for sgml-base ... Removing tcl8.5 ... Purging configuration files for tcl8.5 ... Removing ttf-dejavu-core ... Removing x11-common ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 110920 Build-Time: 774 Distribution: testing Install-Time: 392 Job: qiime_1.4.0-2 Package: qiime Package-Time: 1188 Source-Version: 1.4.0-2 Space: 110920 Status: successful Version: 1.4.0-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120524-1202 Build needed 00:19:48, 110920k disc space