sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build00.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librostlab 1.0.20-1 (armhf) 05 May 2012 16:26 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librostlab Version: 1.0.20-1 Source Version: 1.0.20-1 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/librostlab-FDKuZd/librostlab-1.0.20' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librostlab-FDKuZd' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-016f619d-434d-4d0d-98a3-02c20aab034e' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librostlab' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librostlab/trunk/ Need to get 360 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main librostlab 1.0.20-1 (dsc) [1590 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main librostlab 1.0.20-1 (tar) [354 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main librostlab 1.0.20-1 (diff) [3909 B] Fetched 360 kB in 0s (4503 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-pdbPfo/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, doxygen, graphviz Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, doxygen, graphviz dpkg-deb: building package `sbuild-build-depends-librostlab-dummy' in `/«BUILDDIR»/resolver-UC70gD/apt_archive/sbuild-build-depends-librostlab-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librostlab build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils debhelper doxygen file fontconfig fontconfig-config gettext gettext-base graphviz groff-base html2text intltool-debian libcairo2 libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd2-noxpm libglib2.0-0 libgraph4 libgvc5 libgvpr1 libice6 libjpeg8 libmagic1 libpango1.0-0 libpathplan4 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libsm6 libthai-data libthai0 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxt6 man-db po-debconf ttf-dejavu-core x11-common Suggested packages: wamerican wordlist whois vacation dh-make doxygen-doc doxygen-gui defoma gettext-doc gsfonts graphviz-doc groff libgd-tools ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl Recommended packages: doxygen-latex curl wget lynx-cur autopoint ttf-liberation libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper doxygen file fontconfig fontconfig-config gettext gettext-base graphviz groff-base html2text intltool-debian libcairo2 libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd2-noxpm libglib2.0-0 libgraph4 libgvc5 libgvpr1 libice6 libjpeg8 libmagic1 libpango1.0-0 libpathplan4 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libsm6 libthai-data libthai0 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxt6 man-db po-debconf sbuild-build-depends-librostlab-dummy ttf-dejavu-core x11-common debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 61 newly installed, 0 to remove and 3 not upgraded. Need to get 0 B/20.5 MB of archives. After this operation, 48.8 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libexpat1:armhf. Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ... Selecting previously unselected package libfreetype6:armhf. Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.9-1_armhf.deb) ... 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Selecting previously unselected package sbuild-build-depends-librostlab-dummy. Unpacking sbuild-build-depends-librostlab-dummy (from .../sbuild-build-depends-librostlab-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3.1) ... Setting up libfontconfig1:armhf (2.8.0-3.1) ... Setting up libpixman-1-0:armhf (0.24.4-1) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.4.4-4) ... Setting up libx11-6:armhf (2:1.4.4-4) ... Setting up libxcb-render0:armhf (1.8.1-1) ... Setting up libxcb-shm0:armhf (1.8.1-1) ... Setting up libxrender1:armhf (1:0.9.6-2) ... Setting up libcairo2:armhf (1.10.2-7) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up x11-common (1:7.6+12) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libthai-data (0.1.17-1) ... Setting up libthai0:armhf (0.1.17-1) ... Setting up libxft2:armhf (2.2.0-3) ... Setting up fontconfig (2.8.0-3.1) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.29.4-3) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up libxmu6:armhf (2:1.1.1-1) ... Setting up libxpm4:armhf (1:3.5.10-1) ... Setting up libxaw7:armhf (2:1.0.10-2) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up autotools-dev (20120210.1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up doxygen (1.7.6.1-2.1) ... Setting up libcdt4 (2.26.3-10+rpi1) ... Setting up libcgraph5 (2.26.3-10+rpi1) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-6) ... Setting up libgraph4 (2.26.3-10+rpi1) ... Setting up libpathplan4 (2.26.3-10+rpi1) ... Setting up libxdot4 (2.26.3-10+rpi1) ... Setting up libgvc5 (2.26.3-10+rpi1) ... Setting up libgvpr1 (2.26.3-10+rpi1) ... Setting up graphviz (2.26.3-10+rpi1) ... Setting up sbuild-build-depends-librostlab-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.12-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 doxygen_1.7.6.1-2.1 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 graphviz_2.26.3-10+rpi1 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libcairo2_1.10.2-7 libcdt4_2.26.3-10+rpi1 libcgraph5_2.26.3-10+rpi1 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgd2-noxpm_2.0.36~rc1~dfsg-6 libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi libgraph4_2.26.3-10+rpi1 libgvc5_2.26.3-10+rpi1 libgvpr1_2.26.3-10+rpi1 libice6_2:1.0.8-2 libjpeg8_8d-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-3 libpathplan4_2.26.3-10+rpi1 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxaw7_2:1.0.10-2 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxdot4_2.26.3-10+rpi1 libxext6_2:1.3.1-2 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-9 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxrender1_1:0.9.6-2 libxt6_1:1.1.3-1 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 x11-common_1:7.6+12 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Mar 30 13:49:22 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librostlab_1.0.20-1.dsc dpkg-source: info: extracting librostlab in librostlab-1.0.20 dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz dpkg-source: info: unpacking librostlab_1.0.20-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-016f619d-434d-4d0d-98a3-02c20aab034e SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package librostlab dpkg-buildpackage: source version 1.0.20-1 dpkg-source --before-build librostlab-1.0.20 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel rm -f debian/librostlab3.substvars rm -f debian/librostlab3.*.debhelper rm -rf debian/librostlab3/ rm -f debian/librostlab3-dev.substvars rm -f debian/librostlab3-dev.*.debhelper rm -rf debian/librostlab3-dev/ rm -f debian/librostlab-doc.substvars rm -f debian/librostlab-doc.*.debhelper rm -rf debian/librostlab-doc/ rm -f debian/librostlab3-dbg.substvars rm -f debian/librostlab3-dbg.*.debhelper rm -rf debian/librostlab3-dbg/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_auto_configure -a -O--parallel ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=\${prefix}/lib/librostlab --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_build --parallel make -j1 make[2]: Entering directory `/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory `/«PKGBUILDDIR»' Making all in lib make[4]: Entering directory `/«PKGBUILDDIR»/lib' make all-am make[5]: Entering directory `/«PKGBUILDDIR»/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c blosum62.cpp -fPIC -DPIC -o .libs/librostlab_la-blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -version-info 3:0:0 -Wall -o librostlab.la -rpath /usr/lib librostlab_la-blosum62.lo libtool: link: g++ -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtbeginS.o .libs/librostlab_la-blosum62.o -L/usr/lib/gcc/arm-linux-gnueabihf/4.6 -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/4.6/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/4.6/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/4.6/../../../arm-linux-gnueabihf/crtn.o -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0 libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3") libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so") libtool: link: ar cru .libs/librostlab.a librostlab_la-blosum62.o libtool: link: ranlib .libs/librostlab.a libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" ) make[5]: Leaving directory `/«PKGBUILDDIR»/lib' make[4]: Leaving directory `/«PKGBUILDDIR»/lib' make[4]: Entering directory `/«PKGBUILDDIR»' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»' make[3]: Leaving directory `/«PKGBUILDDIR»' make[2]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory `/«PKGBUILDDIR»/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./Doxyfile Notice: Output directory `../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for files to exclude Searching for files to process... Searching for files in directory /«PKGBUILDDIR»/lib/rostlab Reading and parsing tag files Preprocessing /«PKGBUILDDIR»/lib/rostlab/aux_functions.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/aux_functions.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/blosum62.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/blosum62.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/cwd_resource.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/cwd_resource.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/cxxgrp.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/cxxgrp.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/cxxpwd.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/cxxpwd.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/euid_egid_resource.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/euid_egid_resource.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/file_lock_resource.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/file_lock_resource.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/mapAA2int.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/mapAA2int.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/readFasta.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/readFasta.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/rostlab_stdexcept.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/rostlab_stdexcept.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/rostlab_stdio.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/rostlab_stdio.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/rostlab_stdlib.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/rostlab_stdlib.h... Preprocessing /«PKGBUILDDIR»/lib/rostlab/umask_resource.h... Parsing file /«PKGBUILDDIR»/lib/rostlab/umask_resource.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Creating members for template instances... Computing class relations... Add enum values to enums... Searching for member function documentation... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/aux_functions.h... Generating code for file rostlab/blosum62.h... Generating code for file rostlab/cwd_resource.h... Generating code for file rostlab/cxxgrp.h... Generating code for file rostlab/cxxpwd.h... Generating code for file rostlab/euid_egid_resource.h... Generating code for file rostlab/file_lock_resource.h... Generating code for file rostlab/mapAA2int.h... Generating code for file rostlab/readFasta.h... Generating code for file rostlab/rostlab_stdexcept.h... Generating code for file rostlab/rostlab_stdio.h... Generating code for file rostlab/rostlab_stdlib.h... Generating code for file rostlab/umask_resource.h... Generating file documentation... Generating docs for file rostlab/aux_functions.h... Generating docs for file rostlab/blosum62.h... Generating docs for file rostlab/cwd_resource.h... Generating docs for file rostlab/cxxgrp.h... Generating docs for file rostlab/cxxpwd.h... Generating docs for file rostlab/euid_egid_resource.h... Generating docs for file rostlab/file_lock_resource.h... Generating docs for file rostlab/mapAA2int.h... Generating docs for file rostlab/readFasta.h... Generating docs for file rostlab/rostlab_stdexcept.h... Generating docs for file rostlab/rostlab_stdio.h... Generating docs for file rostlab/rostlab_stdlib.h... Generating docs for file rostlab/umask_resource.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for compound rostlab::cwd_resource... Generating docs for compound rostlab::cxx_group... Generating docs for compound rostlab::gid_not_found_error... Generating docs for compound rostlab::gname_not_found_error... Generating docs for compound rostlab::cxx_passwd... Generating docs for compound rostlab::uid_not_found_error... Generating docs for compound rostlab::uname_not_found_error... Generating docs for compound rostlab::euid_egid_resource... Generating docs for compound rostlab::file_lock_resource... Generating docs for nested compound rostlab::file_lock_resource::wouldblock... Generating docs for compound rostlab::error_backtracer... Generating docs for compound rostlab::exception... Generating docs for compound rostlab::runtime_error... Generating docs for compound rostlab::umask_resource... Generating docs for namespace rostlab::bio Generating docs for compound rostlab::bio::seq... Generating docs for namespace rostlab::bio::fmt Generating docs for compound rostlab::bio::fmt::fasta... Generating graph info page... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... Generating dot graphs using 2 parallel threads... Running dot for graph 1/66 Running dot for graph 2/66 Running dot for graph 3/66 Running dot for graph 4/66 Running dot for graph 5/66 Running dot for graph 6/66 Running dot for graph 7/66 Running dot for graph 8/66 Running dot for graph 9/66 Running dot for graph 10/66 Running dot for graph 11/66 Running dot for graph 12/66 Running dot for graph 13/66 Running dot for graph 14/66 Running dot for graph 15/66 Running dot for graph 16/66 Running dot for graph 17/66 Running dot for graph 18/66 Running dot for graph 19/66 Running dot for graph 20/66 Running dot for graph 21/66 Running dot for graph 22/66 Running dot for graph 23/66 Running dot for graph 24/66 Running dot for graph 25/66 Running dot for graph 26/66 Running dot for graph 27/66 Running dot for graph 28/66 Running dot for graph 29/66 Running dot for graph 30/66 Running dot for graph 31/66 Running dot for graph 32/66 Running dot for graph 33/66 Running dot for graph 34/66 Running dot for graph 35/66 Running dot for graph 36/66 Running dot for graph 37/66 Running dot for graph 38/66 Running dot for graph 39/66 Running dot for graph 40/66 Running dot for graph 41/66 Running dot for graph 42/66 Running dot for graph 43/66 Running dot for graph 44/66 Running dot for graph 45/66 Running dot for graph 46/66 Running dot for graph 47/66 Running dot for graph 48/66 Running dot for graph 49/66 Running dot for graph 50/66 Running dot for graph 51/66 Running dot for graph 52/66 Running dot for graph 53/66 Running dot for graph 54/66 Running dot for graph 55/66 Running dot for graph 56/66 Running dot for graph 57/66 Running dot for graph 58/66 Running dot for graph 59/66 Running dot for graph 60/66 Running dot for graph 61/66 Running dot for graph 62/66 Running dot for graph 63/66 Running dot for graph 64/66 Running dot for graph 65/66 Running dot for graph 66/66 Patching output file 1/41 Patching output file 2/41 Patching output file 3/41 Patching output file 4/41 Patching output file 5/41 Patching output file 6/41 Patching output file 7/41 Patching output file 8/41 Patching output file 9/41 Patching output file 10/41 Patching output file 11/41 Patching output file 12/41 Patching output file 13/41 Patching output file 14/41 Patching output file 15/41 Patching output file 16/41 Patching output file 17/41 Patching output file 18/41 Patching output file 19/41 Patching output file 20/41 Patching output file 21/41 Patching output file 22/41 Patching output file 23/41 Patching output file 24/41 Patching output file 25/41 Patching output file 26/41 Patching output file 27/41 Patching output file 28/41 Patching output file 29/41 Patching output file 30/41 Patching output file 31/41 Patching output file 32/41 Patching output file 33/41 Patching output file 34/41 Patching output file 35/41 Patching output file 36/41 Patching output file 37/41 Patching output file 38/41 Patching output file 39/41 Patching output file 40/41 Patching output file 41/41 symbol cache used 111/65536 hits=4175 misses=111 lookup cache used 172/65536 hits=697 misses=181 finished... make[2]: Leaving directory `/«PKGBUILDDIR»/lib' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a -O--parallel make -j1 check make[1]: Entering directory `/«PKGBUILDDIR»' Making check in lib make[2]: Entering directory `/«PKGBUILDDIR»/lib' make check-am make[3]: Entering directory `/«PKGBUILDDIR»/lib' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Entering directory `/«PKGBUILDDIR»' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel rm -f debian/librostlab3.substvars rm -f debian/librostlab3.*.debhelper rm -rf debian/librostlab3/ rm -f debian/librostlab3-dev.substvars rm -f debian/librostlab3-dev.*.debhelper rm -rf debian/librostlab3-dev/ rm -f debian/librostlab3-dbg.substvars rm -f debian/librostlab3-dbg.*.debhelper rm -rf debian/librostlab3-dbg/ dh_installdirs -a -O--parallel install -d debian/librostlab3 install -d debian/librostlab3-dev install -d debian/librostlab3-dbg dh_auto_install -a -O--parallel make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory `/«PKGBUILDDIR»' Making install in lib make[2]: Entering directory `/«PKGBUILDDIR»/lib' make install-am make[3]: Entering directory `/«PKGBUILDDIR»/lib' make[4]: Entering directory `/«PKGBUILDDIR»/lib' test -z "/usr/lib" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab.la '/«PKGBUILDDIR»/debian/tmp/usr/lib' libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab.so.3.0.0 libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab.la libtool: install: /usr/bin/install -c .libs/librostlab.a /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab.a libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/librostlab.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/include/rostlab" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab" /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/«PKGBUILDDIR»/debian/tmp/usr/include/rostlab' make[4]: Leaving directory `/«PKGBUILDDIR»/lib' make[3]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Leaving directory `/«PKGBUILDDIR»/lib' make[2]: Entering directory `/«PKGBUILDDIR»' make[3]: Entering directory `/«PKGBUILDDIR»' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»' make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a -O--parallel install -d debian/librostlab3//usr/lib cp -a debian/tmp/usr/lib/librostlab.so.3 debian/librostlab3//usr/lib/ cp -a debian/tmp/usr/lib/librostlab.so.3.0.0 debian/librostlab3//usr/lib/ install -d debian/librostlab3-dev//usr/include cp -a debian/tmp/usr/include/rostlab debian/librostlab3-dev//usr/include/ install -d debian/librostlab3-dev//usr/lib cp -a debian/tmp/usr/lib/librostlab.a debian/librostlab3-dev//usr/lib/ cp -a debian/tmp/usr/lib/librostlab.la debian/librostlab3-dev//usr/lib/ cp -a debian/tmp/usr/lib/librostlab.so debian/librostlab3-dev//usr/lib/ dh_installdocs -a -O--parallel install -g 0 -o 0 -d debian/librostlab3/usr/share/doc/librostlab3 install -g 0 -o 0 -m 644 -p debian/copyright debian/librostlab3/usr/share/doc/librostlab3/copyright install -g 0 -o 0 -d debian/librostlab3-dev/usr/share/doc/librostlab3-dev install -g 0 -o 0 -m 644 -p debian/copyright debian/librostlab3-dev/usr/share/doc/librostlab3-dev/copyright install -g 0 -o 0 -d debian/librostlab3-dbg/usr/share/doc/librostlab3-dbg install -g 0 -o 0 -m 644 -p debian/copyright debian/librostlab3-dbg/usr/share/doc/librostlab3-dbg/copyright dh_installchangelogs -a -O--parallel install -o 0 -g 0 -p -m644 debian/changelog debian/librostlab3/usr/share/doc/librostlab3/changelog.Debian install -o 0 -g 0 -p -m644 ./ChangeLog debian/librostlab3/usr/share/doc/librostlab3/changelog install -o 0 -g 0 -p -m644 debian/changelog debian/librostlab3-dev/usr/share/doc/librostlab3-dev/changelog.Debian install -o 0 -g 0 -p -m644 ./ChangeLog debian/librostlab3-dev/usr/share/doc/librostlab3-dev/changelog install -o 0 -g 0 -p -m644 debian/changelog debian/librostlab3-dbg/usr/share/doc/librostlab3-dbg/changelog.Debian install -o 0 -g 0 -p -m644 ./ChangeLog debian/librostlab3-dbg/usr/share/doc/librostlab3-dbg/changelog dh_installexamples -a -O--parallel dh_installman -a -O--parallel dh_installcatalogs -a -O--parallel dh_installcron -a -O--parallel dh_installdebconf -a -O--parallel install -o 0 -g 0 -d debian/librostlab3/DEBIAN install -o 0 -g 0 -d debian/librostlab3-dev/DEBIAN install -o 0 -g 0 -d debian/librostlab3-dbg/DEBIAN dh_installemacsen -a -O--parallel dh_installifupdown -a -O--parallel dh_installinfo -a -O--parallel dh_installinit -a -O--parallel dh_installmenu -a -O--parallel dh_installmime -a -O--parallel dh_installmodules -a -O--parallel dh_installlogcheck -a -O--parallel dh_installlogrotate -a -O--parallel dh_installpam -a -O--parallel dh_installppp -a -O--parallel dh_installudev -a -O--parallel dh_installwm -a -O--parallel dh_installxfonts -a -O--parallel dh_installgsettings -a -O--parallel dh_bugfiles -a -O--parallel dh_ucf -a -O--parallel dh_lintian -a -O--parallel dh_gconf -a -O--parallel dh_icons -a -O--parallel dh_perl -a -O--parallel dh_usrlocal -a -O--parallel dh_link -a -O--parallel rm -f debian/librostlab3/usr/lib/librostlab.so.3 ln -sf librostlab.so.3.0.0 debian/librostlab3/usr/lib/librostlab.so.3 rm -f debian/librostlab3-dev/usr/lib/librostlab.so ln -sf librostlab.so.3.0.0 debian/librostlab3-dev/usr/lib/librostlab.so debian/rules override_dh_compress make[1]: Entering directory `/«PKGBUILDDIR»' dh_compress -Xlibrostlab.tag cd debian/librostlab3 chmod a-x usr/share/doc/librostlab3/changelog.Debian usr/share/doc/librostlab3/changelog gzip -9nf usr/share/doc/librostlab3/changelog.Debian usr/share/doc/librostlab3/changelog cd '/«PKGBUILDDIR»' cd debian/librostlab3-dev chmod a-x usr/share/doc/librostlab3-dev/changelog.Debian usr/share/doc/librostlab3-dev/changelog gzip -9nf usr/share/doc/librostlab3-dev/changelog.Debian usr/share/doc/librostlab3-dev/changelog cd '/«PKGBUILDDIR»' cd debian/librostlab3-dbg chmod a-x usr/share/doc/librostlab3-dbg/changelog.Debian usr/share/doc/librostlab3-dbg/changelog gzip -9nf usr/share/doc/librostlab3-dbg/changelog.Debian usr/share/doc/librostlab3-dbg/changelog cd '/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_fixperms -a -O--parallel find debian/librostlab3 -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librostlab3 ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librostlab3/usr/share/doc -type f ! -regex 'debian/librostlab3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/librostlab3/usr/share/man debian/librostlab3/usr/man/ debian/librostlab3/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3 -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3 -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3/usr/lib/perl5 debian/librostlab3/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/librostlab3/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/librostlab3-dev -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librostlab3-dev ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librostlab3-dev/usr/share/doc -type f ! -regex 'debian/librostlab3-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dev/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/librostlab3-dev/usr/share/man debian/librostlab3-dev/usr/man/ debian/librostlab3-dev/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dev -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dev/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dev/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dev -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dev/usr/lib/perl5 debian/librostlab3-dev/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/librostlab3-dev/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/librostlab3-dbg -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librostlab3-dbg ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librostlab3-dbg/usr/share/doc -type f ! -regex 'debian/librostlab3-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dbg/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/librostlab3-dbg/usr/share/man debian/librostlab3-dbg/usr/man/ debian/librostlab3-dbg/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dbg -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dbg/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dbg/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dbg -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librostlab3-dbg/usr/lib/perl5 debian/librostlab3-dbg/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/librostlab3-dbg/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w debian/rules override_dh_strip make[1]: Entering directory `/«PKGBUILDDIR»' dh_strip --dbg-package=librostlab3-dbg install -d debian/librostlab3-dbg/usr/lib/debug//usr/lib objcopy --only-keep-debug debian/librostlab3/usr/lib/librostlab.so.3.0.0 debian/librostlab3-dbg/usr/lib/debug//usr/lib/librostlab.so.3.0.0 chmod 644 debian/librostlab3-dbg/usr/lib/debug//usr/lib/librostlab.so.3.0.0 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/librostlab3/usr/lib/librostlab.so.3.0.0 objcopy --add-gnu-debuglink debian/librostlab3-dbg/usr/lib/debug//usr/lib/librostlab.so.3.0.0 debian/librostlab3/usr/lib/librostlab.so.3.0.0 strip --strip-debug debian/librostlab3-dev/usr/lib/librostlab.a make[1]: Leaving directory `/«PKGBUILDDIR»' dh_makeshlibs -a -O--parallel rm -f debian/librostlab3/DEBIAN/shlibs echo 'librostlab 3 librostlab3' >>debian/librostlab3/DEBIAN/shlibs echo "# Automatically added by dh_makeshlibs">> debian/librostlab3.postinst.debhelper sed "" /usr/share/debhelper/autoscripts/postinst-makeshlibs >> debian/librostlab3.postinst.debhelper echo '# End automatically added section' >> debian/librostlab3.postinst.debhelper echo "# Automatically added by dh_makeshlibs">> debian/librostlab3.postrm.debhelper sed "" /usr/share/debhelper/autoscripts/postrm-makeshlibs >> debian/librostlab3.postrm.debhelper echo '# End automatically added section' >> debian/librostlab3.postrm.debhelper chmod 644 debian/librostlab3/DEBIAN/shlibs chown 0:0 debian/librostlab3/DEBIAN/shlibs rm -f debian/librostlab3-dev/DEBIAN/shlibs rm -f debian/librostlab3-dbg/DEBIAN/shlibs dh_shlibdeps -a -O--parallel dpkg-shlibdeps -Tdebian/librostlab3.substvars debian/librostlab3/usr/lib/librostlab.so.3.0.0 dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librostlab3/usr/lib/librostlab.so.3.0.0 was not linked against libstdc++.so.6 (it uses none of the library's symbols). dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librostlab3/usr/lib/librostlab.so.3.0.0 was not linked against libgcc_s.so.1 (it uses none of the library's symbols). dh_installdeb -a -O--parallel printf '#!/bin/sh set -e ' > debian/librostlab3/DEBIAN/postinst cat debian/librostlab3.postinst.debhelper >> debian/librostlab3/DEBIAN/postinst chown 0:0 debian/librostlab3/DEBIAN/postinst chmod 755 debian/librostlab3/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/librostlab3/DEBIAN/postrm cat debian/librostlab3.postrm.debhelper >> debian/librostlab3/DEBIAN/postrm chown 0:0 debian/librostlab3/DEBIAN/postrm chmod 755 debian/librostlab3/DEBIAN/postrm dh_gencontrol -a -O--parallel echo misc:Depends= >> debian/librostlab3.substvars dpkg-gencontrol -plibrostlab3 -ldebian/changelog -Tdebian/librostlab3.substvars -Pdebian/librostlab3 chmod 644 debian/librostlab3/DEBIAN/control chown 0:0 debian/librostlab3/DEBIAN/control echo misc:Depends= >> debian/librostlab3-dev.substvars dpkg-gencontrol -plibrostlab3-dev -ldebian/changelog -Tdebian/librostlab3-dev.substvars -Pdebian/librostlab3-dev chmod 644 debian/librostlab3-dev/DEBIAN/control chown 0:0 debian/librostlab3-dev/DEBIAN/control echo misc:Depends= >> debian/librostlab3-dbg.substvars dpkg-gencontrol -plibrostlab3-dbg -ldebian/changelog -Tdebian/librostlab3-dbg.substvars -Pdebian/librostlab3-dbg chmod 644 debian/librostlab3-dbg/DEBIAN/control chown 0:0 debian/librostlab3-dbg/DEBIAN/control dh_md5sums -a -O--parallel (cd debian/librostlab3 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/librostlab3/DEBIAN/md5sums chown 0:0 debian/librostlab3/DEBIAN/md5sums (cd debian/librostlab3-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/librostlab3-dev/DEBIAN/md5sums chown 0:0 debian/librostlab3-dev/DEBIAN/md5sums (cd debian/librostlab3-dbg >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/librostlab3-dbg/DEBIAN/md5sums chown 0:0 debian/librostlab3-dbg/DEBIAN/md5sums dh_builddeb -a -O--parallel dpkg-deb --build debian/librostlab3 .. dpkg-deb: building package `librostlab3' in `../librostlab3_1.0.20-1_armhf.deb'. dpkg-deb --build debian/librostlab3-dev .. dpkg-deb: building package `librostlab3-dev' in `../librostlab3-dev_1.0.20-1_armhf.deb'. dpkg-deb --build debian/librostlab3-dbg .. dpkg-deb: building package `librostlab3-dbg' in `../librostlab3-dbg_1.0.20-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../librostlab_1.0.20-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build librostlab-1.0.20 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120505-1630 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ librostlab_1.0.20-1_armhf.changes: ────────────────────────────────── Format: 1.8 Date: Fri, 30 Mar 2012 15:21:06 +0200 Source: librostlab Binary: librostlab3 librostlab3-dev librostlab-doc librostlab3-dbg Architecture: armhf Version: 1.0.20-1 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: librostlab-doc - C++ library for computational biology (documentation) librostlab3 - C++ library for computational biology librostlab3-dbg - debugging symbols for librostlab librostlab3-dev - C++ library for computational biology (development) Closes: 666192 Changes: librostlab (1.0.20-1) unstable; urgency=low . [ Laszlo Kajan ] * Moved blast parser out into librostlab-blast. * Initial release in Debian (Closes: #666192) . [ Andreas Tille ] * debian/control: - Enhanced long description - Joe Debian-User might possibly not know what rostlab is and from the explanation it did not became clear that the library is useful in computational biology - Priority: optional (just leave the debug package extra) - Short descriptions should be different * debian/librostlab-doc.doc-base: Add doc-base file for the included documentation Checksums-Sha1: 22566fd8d2df91d1360a043c5a90e3035cf7ed56 5676 librostlab3_1.0.20-1_armhf.deb 736d8d144f2b54e21a396fc40b62e66d7b123ce5 13622 librostlab3-dev_1.0.20-1_armhf.deb a0852d2d333e1b7cc92e93b7634a9c886f3d42fb 5598 librostlab3-dbg_1.0.20-1_armhf.deb Checksums-Sha256: 5fb26e843f64c3ff17a3e951b210420992477bfe6685b4c2672b4b368d767f5c 5676 librostlab3_1.0.20-1_armhf.deb 602a615f88f6c781f9954ca6e51108ec5af5cd8f1f3213e711208d9ac65a2fbd 13622 librostlab3-dev_1.0.20-1_armhf.deb 5fecd9e0218ab400450b20cf6328141856a7a369e13d368e1f16dafed292fcf8 5598 librostlab3-dbg_1.0.20-1_armhf.deb Files: 779728397918e26575c534bcbfa99f68 5676 libs optional librostlab3_1.0.20-1_armhf.deb 024922e57e43a9df3d8ae1ee372be4d1 13622 libdevel optional librostlab3-dev_1.0.20-1_armhf.deb 5af04dd9590e02ddf530eb56547923e2 5598 debug extra librostlab3-dbg_1.0.20-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ librostlab3_1.0.20-1_armhf.deb ────────────────────────────── new debian package, version 2.0. size 5676 bytes: control archive= 1067 bytes. 980 bytes, 26 lines control 285 bytes, 4 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 25 bytes, 1 lines shlibs Package: librostlab3 Source: librostlab Version: 1.0.20-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 36 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Section: libs Priority: optional Homepage: http://rostlab.org/ Description: C++ library for computational biology This library was developed by the Rost Lab. The lab's research is driven by a conviction that protein and DNA sequences encode a significant core of information about the ultimate structure and function of genetic material and its gene products. . The library provides the following facilities: * current working directory resource * exception with stack backtrace * file lock resource * passwd and group structures for C++ * effective uid and gid resource * rostlab::bio::seq class with stream input operator for FASTA format * umask resource . This package contains the shared library. drwxr-xr-x root/root 0 2012-05-05 16:29 ./ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/doc/librostlab3/ -rw-r--r-- root/root 1371 2012-03-30 06:47 ./usr/share/doc/librostlab3/changelog.Debian.gz -rw-r--r-- root/root 2019 2012-03-30 01:15 ./usr/share/doc/librostlab3/copyright -rw-r--r-- root/root 153 2012-03-29 08:06 ./usr/share/doc/librostlab3/changelog.gz drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/lib/ -rw-r--r-- root/root 3664 2012-05-05 16:29 ./usr/lib/librostlab.so.3.0.0 lrwxrwxrwx root/root 0 2012-05-05 16:29 ./usr/lib/librostlab.so.3 -> librostlab.so.3.0.0 librostlab3-dev_1.0.20-1_armhf.deb ────────────────────────────────── new debian package, version 2.0. size 13622 bytes: control archive= 1339 bytes. 1081 bytes, 30 lines control 1244 bytes, 18 lines md5sums Package: librostlab3-dev Source: librostlab Version: 1.0.20-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 83 Depends: librostlab3 (= 1.0.20-1) Suggests: librostlab-doc Replaces: librostlab0-dev Provides: librostlab-dev Section: libdevel Priority: optional Homepage: http://rostlab.org/ Description: C++ library for computational biology (development) This library was developed by the Rost Lab. The lab's research is driven by a conviction that protein and DNA sequences encode a significant core of information about the ultimate structure and function of genetic material and its gene products. . The library provides the following facilities: * current working directory resource * exception with stack backtrace * file lock resource * passwd and group structures for C++ * effective uid and gid resource * rostlab::bio::seq class with stream input operator for FASTA format * umask resource . This package contains files necessary for developing applications with librostlab. drwxr-xr-x root/root 0 2012-05-05 16:29 ./ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/doc/librostlab3-dev/ -rw-r--r-- root/root 1371 2012-03-30 06:47 ./usr/share/doc/librostlab3-dev/changelog.Debian.gz -rw-r--r-- root/root 2019 2012-03-30 01:15 ./usr/share/doc/librostlab3-dev/copyright -rw-r--r-- root/root 153 2012-03-29 08:06 ./usr/share/doc/librostlab3-dev/changelog.gz drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/lib/ -rw-r--r-- root/root 951 2012-05-05 16:29 ./usr/lib/librostlab.la -rw-r--r-- root/root 1834 2012-05-05 16:29 ./usr/lib/librostlab.a drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/include/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/include/rostlab/ -rw-r--r-- root/root 3159 2012-05-05 16:29 ./usr/include/rostlab/rostlab_stdio.h -rw-r--r-- root/root 5661 2012-05-05 16:29 ./usr/include/rostlab/aux_functions.h -rw-r--r-- root/root 1149 2012-05-05 16:29 ./usr/include/rostlab/blosum62.h -rw-r--r-- root/root 3601 2012-05-05 16:29 ./usr/include/rostlab/file_lock_resource.h -rw-r--r-- root/root 3443 2012-05-05 16:29 ./usr/include/rostlab/readFasta.h -rw-r--r-- root/root 3803 2012-05-05 16:29 ./usr/include/rostlab/cxxpwd.h -rw-r--r-- root/root 2268 2012-05-05 16:29 ./usr/include/rostlab/rostlab_stdexcept.h -rw-r--r-- root/root 2243 2012-05-05 16:29 ./usr/include/rostlab/cwd_resource.h -rw-r--r-- root/root 1430 2012-05-05 16:29 ./usr/include/rostlab/umask_resource.h -rw-r--r-- root/root 3450 2012-05-05 16:29 ./usr/include/rostlab/mapAA2int.h -rw-r--r-- root/root 3107 2012-05-05 16:29 ./usr/include/rostlab/euid_egid_resource.h -rw-r--r-- root/root 3193 2012-05-05 16:29 ./usr/include/rostlab/rostlab_stdlib.h -rw-r--r-- root/root 5180 2012-05-05 16:29 ./usr/include/rostlab/cxxgrp.h lrwxrwxrwx root/root 0 2012-05-05 16:29 ./usr/lib/librostlab.so -> librostlab.so.3.0.0 librostlab3-dbg_1.0.20-1_armhf.deb ────────────────────────────────── new debian package, version 2.0. size 5598 bytes: control archive= 716 bytes. 707 bytes, 21 lines control 311 bytes, 4 lines md5sums Package: librostlab3-dbg Source: librostlab Version: 1.0.20-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 49 Depends: librostlab3 (= 1.0.20-1) Section: debug Priority: extra Homepage: http://rostlab.org/ Description: debugging symbols for librostlab The library provides the following facilities: * current working directory resource * exception with stack backtrace * file lock resource * passwd and group structures for C++ * effective uid and gid resource * rostlab::bio::seq class with stream input operator for FASTA format * umask resource . This package provides the detached debug symbols for librostlab. drwxr-xr-x root/root 0 2012-05-05 16:29 ./ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/share/doc/librostlab3-dbg/ -rw-r--r-- root/root 1371 2012-03-30 06:47 ./usr/share/doc/librostlab3-dbg/changelog.Debian.gz -rw-r--r-- root/root 2019 2012-03-30 01:15 ./usr/share/doc/librostlab3-dbg/copyright -rw-r--r-- root/root 153 2012-03-29 08:06 ./usr/share/doc/librostlab3-dbg/changelog.gz drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/lib/debug/usr/ drwxr-xr-x root/root 0 2012-05-05 16:29 ./usr/lib/debug/usr/lib/ -rw-r--r-- root/root 4697 2012-05-05 16:29 ./usr/lib/debug/usr/lib/librostlab.so.3.0.0 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autotools-dev* bsdmainutils* debhelper* doxygen* file* fontconfig* fontconfig-config* gettext* gettext-base* graphviz* groff-base* html2text* intltool-debian* libcairo2* libcdt4* libcgraph5* libcroco3* libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgd2-noxpm* libglib2.0-0* libgraph4* libgvc5* libgvpr1* libice6* libjpeg8* libmagic1* libpango1.0-0* libpathplan4* libpcre3* libpipeline1* libpixman-1-0* libpng12-0* libsm6* libthai-data* libthai0* libunistring0* libx11-6* libx11-data* libxau6* libxaw7* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxdot4* libxext6* libxft2* libxml2* libxmu6* libxpm4* libxrender1* libxt6* man-db* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-librostlab-dummy* ttf-dejavu-core* x11-common* 0 upgraded, 0 newly installed, 62 to remove and 3 not upgraded. After this operation, 48.8 MB disk space will be freed. (Reading database ... 12838 files and directories currently installed.) 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Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... Removing ttf-dejavu-core ... Removing x11-common ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 5548 Build-Time: 110 Distribution: testing Install-Time: 105 Job: librostlab_1.0.20-1 Package: librostlab Package-Time: 232 Source-Version: 1.0.20-1 Space: 5548 Status: successful Version: 1.0.20-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120505-1630 Build needed 00:03:52, 5548k disc space