sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build00.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ disulfinder 1.2.11-2 (armhf) 04 May 2012 20:32 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: disulfinder Version: 1.2.11-2 Source Version: 1.2.11-2 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/disulfinder-uSIcp7/disulfinder-1.2.11' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/disulfinder-uSIcp7' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-20926ec4-7c9a-4b20-87b6-0db61c0ff099' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'disulfinder' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/disulfinder/trunk/ Need to get 2486 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main disulfinder 1.2.11-2 (dsc) [1456 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main disulfinder 1.2.11-2 (tar) [2481 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main disulfinder 1.2.11-2 (diff) [3527 B] Fetched 2486 kB in 0s (8459 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-iZx5uy/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libboost-dev, libboost-graph-dev, libf2c2-dev Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libboost-dev, libboost-graph-dev, libf2c2-dev dpkg-deb: building package `sbuild-build-depends-disulfinder-dummy' in `/«BUILDDIR»/resolver-KFcWt6/apt_archive/sbuild-build-depends-disulfinder-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install disulfinder build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libboost-dev libboost-graph-dev libboost-graph1.49-dev libboost-serialization1.49-dev libboost-serialization1.49.0 libboost-test1.49-dev libboost-test1.49.0 libboost1.49-dev libcroco3 libf2c2 libf2c2-dev libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libboost-doc libboost1.49-doc libboost-chrono1.49-dev libboost-date-time1.49-dev libboost-filesystem1.49-dev libboost-graph-parallel1.49-dev libboost-iostreams1.49-dev libboost-locale1.49-dev libboost-math1.49-dev libboost-mpi1.49-dev libboost-program-options1.49-dev libboost-python1.49-dev libboost-random1.49-dev libboost-regex1.49-dev libboost-signals1.49-dev libboost-system1.49-dev libboost-thread1.49-dev libboost-timer1.49-dev libboost-wave1.49-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libboost-graph1.49.0 libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libboost-dev libboost-graph-dev libboost-graph1.49-dev libboost-serialization1.49-dev libboost-serialization1.49.0 libboost-test1.49-dev libboost-test1.49.0 libboost1.49-dev libcroco3 libf2c2 libf2c2-dev libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-disulfinder-dummy 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 1711 kB/20.7 MB of archives. After this operation, 126 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main libboost-dev armhf 1.49.0.1 [3030 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main libboost-test1.49.0 armhf 1.49.0-2 [245 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main libboost-test1.49-dev armhf 1.49.0-2 [713 kB] Get:4 http://repo.raspbian.lan/raspbian/ testing/main libboost-graph1.49-dev armhf 1.49.0-2 [177 kB] Get:5 http://repo.raspbian.lan/raspbian/ testing/main libboost-graph-dev armhf 1.49.0.1 [2816 B] Get:6 http://repo.raspbian.lan/raspbian/ testing/main libf2c2 armhf 20090411-2 [154 kB] Get:7 http://repo.raspbian.lan/raspbian/ testing/main libf2c2-dev armhf 20090411-2 [417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1711 kB in 0s (6728 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package libboost1.49-dev. Unpacking libboost1.49-dev (from .../libboost1.49-dev_1.49.0-2_armhf.deb) ... Selecting previously unselected package libboost-dev. Unpacking libboost-dev (from .../libboost-dev_1.49.0.1_armhf.deb) ... Selecting previously unselected package libboost-serialization1.49.0. Unpacking libboost-serialization1.49.0 (from .../libboost-serialization1.49.0_1.49.0-2_armhf.deb) ... Selecting previously unselected package libboost-serialization1.49-dev. Unpacking libboost-serialization1.49-dev (from .../libboost-serialization1.49-dev_1.49.0-2_armhf.deb) ... Selecting previously unselected package libboost-test1.49.0. Unpacking libboost-test1.49.0 (from .../libboost-test1.49.0_1.49.0-2_armhf.deb) ... Selecting previously unselected package libboost-test1.49-dev. Unpacking libboost-test1.49-dev (from .../libboost-test1.49-dev_1.49.0-2_armhf.deb) ... Selecting previously unselected package libboost-graph1.49-dev. Unpacking libboost-graph1.49-dev (from .../libboost-graph1.49-dev_1.49.0-2_armhf.deb) ... Selecting previously unselected package libboost-graph-dev. Unpacking libboost-graph-dev (from .../libboost-graph-dev_1.49.0.1_armhf.deb) ... Selecting previously unselected package libf2c2. Unpacking libf2c2 (from .../libf2c2_20090411-2_armhf.deb) ... Selecting previously unselected package libf2c2-dev. Unpacking libf2c2-dev (from .../libf2c2-dev_20090411-2_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-disulfinder-dummy. Unpacking sbuild-build-depends-disulfinder-dummy (from .../sbuild-build-depends-disulfinder-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up libboost1.49-dev (1.49.0-2) ... Setting up libboost-dev (1.49.0.1) ... Setting up libboost-serialization1.49.0 (1.49.0-2) ... Setting up libboost-serialization1.49-dev (1.49.0-2) ... Setting up libboost-test1.49.0 (1.49.0-2) ... Setting up libboost-test1.49-dev (1.49.0-2) ... Setting up libboost-graph1.49-dev (1.49.0-2) ... Setting up libboost-graph-dev (1.49.0.1) ... Setting up libf2c2 (20090411-2) ... Setting up libf2c2-dev (20090411-2) ... Setting up sbuild-build-depends-disulfinder-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.12-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libboost-dev_1.49.0.1 libboost-graph-dev_1.49.0.1 libboost-graph1.49-dev_1.49.0-2 libboost-serialization1.49-dev_1.49.0-2 libboost-serialization1.49.0_1.49.0-2 libboost-test1.49-dev_1.49.0-2 libboost-test1.49.0_1.49.0-2 libboost1.49-dev_1.49.0-2 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libf2c2_20090411-2 libf2c2-dev_20090411-2 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-disulfinder-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Sep 1 12:45:13 2011 UTC using DSA key ID BE9D5339 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./disulfinder_1.2.11-2.dsc dpkg-source: info: extracting disulfinder in disulfinder-1.2.11 dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-20926ec4-7c9a-4b20-87b6-0db61c0ff099 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package disulfinder dpkg-buildpackage: source version 1.2.11-2 dpkg-source --before-build disulfinder-1.2.11 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make -j1 distclean make[1]: Entering directory `/«PKGBUILDDIR»' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[2]: Entering directory `/«PKGBUILDDIR»/disulfind/src' make -C NN clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/NN' make -C Common clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/Common' make -C eig clean make[4]: Entering directory `/«PKGBUILDDIR»/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[4]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/Common' make -C SVM clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/SVM' cd SVM && make clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/SVM' cd Input && make clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/Input' cd Output && make clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/Output' cd FSA-Alignment && make clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/FSA-Alignment' cd BRNN && make clean make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[2]: Leaving directory `/«PKGBUILDDIR»/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean rm -f debian/disulfinder.substvars rm -f debian/disulfinder.*.debhelper rm -rf debian/disulfinder/ rm -f debian/disulfinder-data.substvars rm -f debian/disulfinder-data.*.debhelper rm -rf debian/disulfinder-data/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build-arch dh_testdir /usr/bin/make prefix=/usr make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make -C disulfind/src disulfinder make[2]: Entering directory `/«PKGBUILDDIR»/disulfind/src' g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o Input/Protein.h:16:20: warning: 'aa_codes' defined but not used [-Wunused-variable] Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o Input/Protein.h:16:20: warning: 'aa_codes' defined but not used [-Wunused-variable] Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c SVM/SVMClassifier.cpp -o SVM/SVMClassifier.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeHTMLOutput.cpp -o Output/makeHTMLOutput.o Output/makeHTMLOutput.cpp: In function 'void makeHTMLOutput(std::string, const char*, int, std::string, std::ostream&)': Output/makeHTMLOutput.cpp:162:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] Output/makeHTMLOutput.cpp:162:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/utils.cpp -o Output/utils.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeASCIIOutput.cpp -o Output/makeASCIIOutput.o Output/makeASCIIOutput.cpp: In function 'void makeASCIIOutput(std::string, const char*, int, std::string, std::ostream&)': Output/makeASCIIOutput.cpp:144:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] Output/makeASCIIOutput.cpp:144:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/fsa.cpp -o FSA-Alignment/fsa.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/viterbi_aligner.cpp -o FSA-Alignment/viterbi_aligner.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/multi-array.cpp -o NN/multi-array.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/array.cpp -o NN/array.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-model.cpp -o NN/brnn-model.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-test.cpp -o NN/brnn-test.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Node.cpp -o BRNN/RNNs/Node.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/StructureSearch.cpp -o BRNN/RNNs/StructureSearch.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DataSet.cpp -o BRNN/RNNs/DataSet.o In file included from BRNN/RNNs/DataSet.cpp:1:0: BRNN/RNNs/DataSet.h:37:2: warning: 'typedef' was ignored in this declaration [enabled by default] In file included from BRNN/RNNs/DataSet.cpp:1:0: BRNN/RNNs/DataSet.h: In constructor 'DataSet::iterator::iterator(DataSet&)': BRNN/RNNs/DataSet.h:86:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DataSet.h: In member function 'bool DataSet::iterator::operator++()': BRNN/RNNs/DataSet.h:116:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DataSet.h:135:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DataSet.cpp: In constructor 'DataSet::DataSet(const char*, const char*)': BRNN/RNNs/DataSet.cpp:69:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DataSet.cpp: In member function 'bool DataSet::loadInstances(const char*)': BRNN/RNNs/DataSet.cpp:141:7: warning: unused variable 'ng' [-Wunused-variable] BRNN/RNNs/DataSet.cpp: At global scope: BRNN/RNNs/DataSet.cpp:14:12: warning: 'int one(const dirent*)' defined but not used [-Wunused-function] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DPAG.cpp -o BRNN/RNNs/DPAG.o BRNN/RNNs/DPAG.cpp: In function 'float PRMeasure(const DPAG&, const DPAG&, std::vector&)': BRNN/RNNs/DPAG.cpp:48:7: warning: unused variable 'global_predicted_positives' [-Wunused-variable] BRNN/RNNs/DPAG.cpp:49:5: warning: unused variable 'global_actual_positives' [-Wunused-variable] BRNN/RNNs/DPAG.cpp:52:12: warning: unused variable 'graphNode' [-Wunused-variable] BRNN/RNNs/DPAG.cpp: In function 'float PrecisionMeasure(const DPAG&, const DPAG&, std::vector&)': BRNN/RNNs/DPAG.cpp:302:12: warning: unused variable 'graphNode' [-Wunused-variable] BRNN/RNNs/DPAG.cpp: In function 'std::pair globalPRMeasure(const DPAG&, const DPAG&, int&, int&, int&, int&, int&, int&, float&)': BRNN/RNNs/DPAG.cpp:361:12: warning: unused variable 'graphNode' [-Wunused-variable] BRNN/RNNs/DPAG.cpp: In function 'ConfusionTable getPredictionIndexes(const DPAG&, const DPAG&, std::vector&)': BRNN/RNNs/DPAG.cpp:561:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DPAG.cpp:471:9: warning: unused variable 'weight' [-Wunused-variable] BRNN/RNNs/DPAG.cpp: In function 'float RecallMeasure(const DPAG&, const DPAG&, std::vector&)': BRNN/RNNs/DPAG.cpp:573:12: warning: unused variable 'graphNode' [-Wunused-variable] BRNN/RNNs/DPAG.cpp: In function 'bool equal(const DPAG&, const DPAG&)': BRNN/RNNs/DPAG.cpp:746:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DPAG.cpp:692:12: warning: unused variable 'node' [-Wunused-variable] BRNN/RNNs/DPAG.cpp: In function 'std::pair, boost::property >, boost::adjacency_list, boost::property > > dpag_to_rnndpag(const DPAG&)': BRNN/RNNs/DPAG.cpp:832:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DPAG.cpp:839:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DPAG.cpp:844:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DPAG.cpp:862:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DPAG.cpp:867:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DPAG.cpp:813:12: warning: unused variable 'node' [-Wunused-variable] BRNN/RNNs/DPAG.cpp: In function 'DPAG rnndpag_to_dpag(const std::pair, boost::property >, boost::adjacency_list, boost::property > >&)': BRNN/RNNs/DPAG.cpp:878:12: warning: variable 'vertex_id' set but not used [-Wunused-but-set-variable] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Options.cpp -o BRNN/RNNs/Options.o BRNN/RNNs/Options.cpp: In member function 'virtual void Options::parse_config(const string&)': BRNN/RNNs/Options.cpp:30:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:36:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:42:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:47:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:61:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:79:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:85:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:90:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:99:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp: In member function 'virtual void Options::parse_args(int, char**)': BRNN/RNNs/Options.cpp:138:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:144:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:150:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:155:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:169:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:187:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:193:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:198:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/Options.cpp:207:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/protein_util.cpp -o BRNN/protein_util.o In file included from BRNN/protein_util.cpp:1:0: BRNN/protein_util.h: In constructor 'Residue::Residue(int, int, char, float, float, float, float, float, char)': BRNN/protein_util.h:209:16: warning: 'Residue::_coord' will be initialized after [-Wreorder] BRNN/protein_util.h:208:9: warning: 'float Residue::_hydr' [-Wreorder] BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h:208:16: warning: 'Residue::_acc' will be initialized after [-Wreorder] BRNN/protein_util.h:207:17: warning: 'char Residue::_ssbridge' [-Wreorder] BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h: In copy constructor 'Residue::Residue(const Residue&)': BRNN/protein_util.h:209:16: warning: 'Residue::_coord' will be initialized after [-Wreorder] BRNN/protein_util.h:208:9: warning: 'float Residue::_hydr' [-Wreorder] BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h:208:16: warning: 'Residue::_acc' will be initialized after [-Wreorder] BRNN/protein_util.h:207:17: warning: 'char Residue::_ssbridge' [-Wreorder] BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h:211:13: warning: 'Residue::_bp2' will be initialized after [-Wreorder] BRNN/protein_util.h:206:24: warning: 'int Residue::_ssp' [-Wreorder] BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h: In constructor 'SSegment::SSegment(char)': BRNN/protein_util.h:241:16: warning: 'SSegment::_baricentre' will be initialized after [-Wreorder] BRNN/protein_util.h:239:18: warning: 'SSegment::Hydrophobicity SSegment::_hydr' [-Wreorder] BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] BRNN/protein_util.cpp: In member function 'void Chain::setSShydrophobicity()': BRNN/protein_util.cpp:365:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/protein_util.cpp:380:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/protein_util.cpp:386:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/protein_util.cpp:391:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/protein_util.cpp:401:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/blast_util.cpp -o BRNN/blast_util.o BRNN/blast_util.cpp: In member function 'void PSSM::parsePsiBlastReport(const char*)': BRNN/blast_util.cpp:34:13: warning: unused variable 'prof' [-Wunused-variable] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/rnn_util.cpp -o BRNN/rnn_util.o In file included from BRNN/rnn_util.cpp:4:0: BRNN/RNNs/DataSet.h:37:2: warning: 'typedef' was ignored in this declaration [enabled by default] In file included from BRNN/rnn_util.cpp:4:0: BRNN/RNNs/DataSet.h: In constructor 'DataSet::iterator::iterator(DataSet&)': BRNN/RNNs/DataSet.h:86:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DataSet.h: In member function 'bool DataSet::iterator::operator++()': BRNN/RNNs/DataSet.h:116:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/DataSet.h:135:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] In file included from BRNN/rnn_util.cpp:7:0: BRNN/protein_util.h: In constructor 'Residue::Residue(int, int, char, float, float, float, float, float, char)': BRNN/protein_util.h:209:16: warning: 'Residue::_coord' will be initialized after [-Wreorder] BRNN/protein_util.h:208:9: warning: 'float Residue::_hydr' [-Wreorder] BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h:208:16: warning: 'Residue::_acc' will be initialized after [-Wreorder] BRNN/protein_util.h:207:17: warning: 'char Residue::_ssbridge' [-Wreorder] BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h: In copy constructor 'Residue::Residue(const Residue&)': BRNN/protein_util.h:209:16: warning: 'Residue::_coord' will be initialized after [-Wreorder] BRNN/protein_util.h:208:9: warning: 'float Residue::_hydr' [-Wreorder] BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h:208:16: warning: 'Residue::_acc' will be initialized after [-Wreorder] BRNN/protein_util.h:207:17: warning: 'char Residue::_ssbridge' [-Wreorder] BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h:211:13: warning: 'Residue::_bp2' will be initialized after [-Wreorder] BRNN/protein_util.h:206:24: warning: 'int Residue::_ssp' [-Wreorder] BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] BRNN/protein_util.h: In constructor 'SSegment::SSegment(char)': BRNN/protein_util.h:241:16: warning: 'SSegment::_baricentre' will be initialized after [-Wreorder] BRNN/protein_util.h:239:18: warning: 'SSegment::Hydrophobicity SSegment::_hydr' [-Wreorder] BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] BRNN/rnn_util.cpp: In function 'void create_connectivity_input_data(const string&, const string&, int, int, const string&)': BRNN/rnn_util.cpp:233:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp:277:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp: In function 'void rnn_predict_disulphides(const string&, const string&, const string&, const string&, const string&, const string&, int)': BRNN/rnn_util.cpp:359:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp:348:16: warning: variable 'vertex_id' set but not used [-Wunused-but-set-variable] BRNN/rnn_util.cpp:405:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp:406:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp:407:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp:378:18: warning: unused variable 'nodes' [-Wunused-variable] In file included from BRNN/rnn_util.cpp:5:0: BRNN/RNNs/RecursiveNN.h: In constructor 'RecursiveNN::RecursiveNN(const char*) [with HA_Function = TanH, OA_Function = Sigmoid, EMP = MGradientDescent]': BRNN/rnn_util.cpp:88:73: instantiated from here BRNN/RNNs/RecursiveNN.h:1018:13: warning: unused variable 'trasd' [-Wunused-variable] BRNN/RNNs/RecursiveNN.h:1026:23: warning: variable 'indexes' set but not used [-Wunused-but-set-variable] BRNN/RNNs/RecursiveNN.h:1047:7: warning: unused variable 'default_precision' [-Wunused-variable] In file included from BRNN/rnn_util.cpp:6:0: BRNN/RNNs/StructureSearch.h: In member function 'std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH, T2 = Sigmoid, T3 = MGradientDescent, RNN = RecursiveNN]': BRNN/rnn_util.cpp:396:65: instantiated from here BRNN/RNNs/StructureSearch.h:977:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp:396:65: instantiated from here BRNN/RNNs/StructureSearch.h:984:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/rnn_util.cpp:396:65: instantiated from here BRNN/RNNs/StructureSearch.h:980:7: warning: unused variable 'num_nodes' [-Wunused-variable] In file included from BRNN/rnn_util.cpp:5:0: BRNN/RNNs/RecursiveNN.h: In member function 'void RecursiveNN::fPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH, OA_Function = Sigmoid, EMP = MGradientDescent, DPAG = boost::adjacency_list, boost::property >]': BRNN/RNNs/RecursiveNN.h:1356:3: instantiated from 'void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH, OA_Function = Sigmoid, EMP = MGradientDescent]' BRNN/rnn_util.cpp:99:47: instantiated from here BRNN/RNNs/RecursiveNN.h:1390:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/RecursiveNN.h:1356:3: instantiated from 'void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH, OA_Function = Sigmoid, EMP = MGradientDescent]' BRNN/rnn_util.cpp:99:47: instantiated from here BRNN/RNNs/RecursiveNN.h:1414:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/RecursiveNN.h:1418:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/RecursiveNN.h:1356:3: instantiated from 'void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH, OA_Function = Sigmoid, EMP = MGradientDescent]' BRNN/rnn_util.cpp:99:47: instantiated from here BRNN/RNNs/RecursiveNN.h:1384:12: warning: variable 'vertex_id' set but not used [-Wunused-but-set-variable] BRNN/RNNs/RecursiveNN.h: In member function 'void RecursiveNN::bPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH, OA_Function = Sigmoid, EMP = MGradientDescent, DPAG = boost::adjacency_list, boost::property >]': BRNN/RNNs/RecursiveNN.h:1359:19: instantiated from 'void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH, OA_Function = Sigmoid, EMP = MGradientDescent]' BRNN/rnn_util.cpp:99:47: instantiated from here BRNN/RNNs/RecursiveNN.h:1470:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/RecursiveNN.h:1471:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/RecursiveNN.h:1491:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/RecursiveNN.h:1495:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] BRNN/RNNs/RecursiveNN.h:1465:12: warning: variable 'vertex_id' set but not used [-Wunused-but-set-variable] In file included from BRNN/rnn_util.cpp:6:0: BRNN/RNNs/StructureSearch.h: In member function 'float StructureSearch::RNNMeasure(const DPAG&, RNN*, std::vector&, std::vector&) [with T1 = TanH, T2 = Sigmoid, T3 = MGradientDescent, RNN = RecursiveNN, DPAG = boost::adjacency_list, boost::property >]': BRNN/RNNs/StructureSearch.h:990:66: instantiated from 'std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH, T2 = Sigmoid, T3 = MGradientDescent, RNN = RecursiveNN]' BRNN/rnn_util.cpp:396:65: instantiated from here BRNN/RNNs/StructureSearch.h:186:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/make -C Common lib make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/Common' g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Vector.cpp -o Vector.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Util.cpp -o Util.o Util.cpp: In function 'std::string Util::runCommand(std::string)': Util.cpp:171:14: warning: converting 'false' to pointer type for argument 1 of 'std::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with _CharT = char, _Traits = std::char_traits, _Alloc = std::allocator]' [-Wconversion-null] g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c CommonMethods.cpp -o CommonMethods.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c ConfusionMatrix.cpp -o ConfusionMatrix.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Exception.cpp -o Exception.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Statistics.cpp -o Statistics.o cc -c -o eig/balanc.o eig/balanc.c cc -c -o eig/balbak.o eig/balbak.c cc -c -o eig/cdiv.o eig/cdiv.c cc -c -o eig/elmhes.o eig/elmhes.c cc -c -o eig/eltran.o eig/eltran.c cc -c -o eig/hqr.o eig/hqr.c cc -c -o eig/hqr2.o eig/hqr2.c cc -c -o eig/rg.o eig/rg.c g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c coords.cpp -o coords.o cc -c -o eig/d_sign.o eig/d_sign.c ar rvs libCommon.a Vector.o Util.o CommonMethods.o ConfusionMatrix.o Exception.o Statistics.o eig/balanc.o eig/balbak.o eig/cdiv.o eig/elmhes.o eig/eltran.o eig/hqr.o eig/hqr2.o eig/rg.o coords.o eig/d_sign.o ar: creating libCommon.a a - Vector.o a - Util.o a - CommonMethods.o a - ConfusionMatrix.o a - Exception.o a - Statistics.o a - eig/balanc.o a - eig/balbak.o a - eig/cdiv.o a - eig/elmhes.o a - eig/eltran.o a - eig/hqr.o a - eig/hqr2.o a - eig/rg.o a - coords.o a - eig/d_sign.o make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/Common' g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c disulfinder.cpp -o disulfinder.o Input/Protein.h:16:20: warning: 'aa_codes' defined but not used [-Wunused-variable] Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] g++ -o disulfinder disulfinder.o Input/GlobalDescriptor.o Input/createBRNNDataset.o Input/createKernelDataset.o Input/makeWindow.o Input/makeSparseVector.o Input/Protein.o Input/buildXfolds.o SVM/SVMClassifier.o Output/makeHTMLOutput.o Output/utils.o Output/makeASCIIOutput.o FSA-Alignment/fsa.o FSA-Alignment/viterbi_aligner.o NN/multi-array.o NN/array.o NN/brnn-model.o NN/brnn-test.o BRNN/RNNs/Node.o BRNN/RNNs/StructureSearch.o BRNN/RNNs/DataSet.o BRNN/RNNs/DPAG.o BRNN/RNNs/Options.o BRNN/protein_util.o BRNN/blast_util.o BRNN/rnn_util.o -LCommon/ -lCommon make[2]: Leaving directory `/«PKGBUILDDIR»/disulfind/src' sed -e 's|__datadir__||g;s|__docdir__|/usr/share/doc/disulfinder|g;s|__pkgdatadir__||g;s|__PREFIX__|/usr|g;s|__sysconfdir__||g;s|__VERSION__|1.2.11|g;' "disulfinder.pod" | \ pod2man -c 'User Commands' -r '1.2.11' -name DISULFINDER > "disulfinder.1" make[1]: Leaving directory `/«PKGBUILDDIR»' #docbook-to-man debian/disulfinder.sgml > disulfinder.1 touch build-stamp dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make -j1 make[1]: Entering directory `/«PKGBUILDDIR»' make -C disulfind/src disulfinder make[2]: Entering directory `/«PKGBUILDDIR»/disulfind/src' make -C Common lib make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src/Common' make[3]: Nothing to be done for `lib'. make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src/Common' make[2]: Leaving directory `/«PKGBUILDDIR»/disulfind/src' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f debian/disulfinder.substvars rm -f debian/disulfinder.*.debhelper rm -rf debian/disulfinder/ dh_installdirs -a install -d debian/disulfinder dh_auto_install -a make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory `/«PKGBUILDDIR»' make -C disulfind/src install make[2]: Entering directory `/«PKGBUILDDIR»/disulfind/src' mkdir -p /«PKGBUILDDIR»/debian/tmp/bin cp disulfinder /«PKGBUILDDIR»/debian/tmp/bin/ mkdir -p /«PKGBUILDDIR»/debian/tmp/share/disulfinder mkdir -p /«PKGBUILDDIR»/debian/tmp/share/disulfinder/Models cp -r ../Models /«PKGBUILDDIR»/debian/tmp/share/disulfinder/ && find /«PKGBUILDDIR»/debian/tmp/share/disulfinder/ -depth -ignore_readdir_race -name .svn -execdir rm -rf {} \; rm -rf /«PKGBUILDDIR»/debian/tmp/share/disulfinder/Models/conn/data/sequences_w5 rm -rf /«PKGBUILDDIR»/debian/tmp/share/disulfinder/Predictions rm -rf /«PKGBUILDDIR»/debian/tmp/share/disulfinder/tmp make[2]: Leaving directory `/«PKGBUILDDIR»/disulfind/src' mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 && cp disulfinder.1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1/ mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/share/doc/disulfinder/examples && cp examples/res_id_* /«PKGBUILDDIR»/debian/tmp/usr/share/doc/disulfinder/examples/ make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_install make[1]: Entering directory `/«PKGBUILDDIR»' dh build dh_testdir -Ndisulfinder dh_testdir: No packages to build. dh_auto_configure -Ndisulfinder dh_auto_configure: No packages to build. dh_auto_build -Ndisulfinder dh_auto_build: No packages to build. dh_auto_test -Ndisulfinder dh_auto_test: No packages to build. dh_testdir dh_testroot dh_prep rm -f debian/disulfinder.substvars rm -f debian/disulfinder.*.debhelper rm -rf debian/disulfinder/ rm -rf debian/tmp dh_installdirs install -d debian/disulfinder /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/disulfinder prefix=/usr install make[2]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make -C disulfind/src install make[3]: Entering directory `/«PKGBUILDDIR»/disulfind/src' mkdir -p /«PKGBUILDDIR»/debian/disulfinder/usr/bin cp disulfinder /«PKGBUILDDIR»/debian/disulfinder/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder mkdir -p /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder/Models cp -r ../Models /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder/ && find /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder/ -depth -ignore_readdir_race -name .svn -execdir rm -rf {} \; rm -rf /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder/Models/conn/data/sequences_w5 rm -rf /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder/Predictions rm -rf /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder/tmp make[3]: Leaving directory `/«PKGBUILDDIR»/disulfind/src' mkdir -p /«PKGBUILDDIR»/debian/disulfinder/usr/share/man/man1 && cp disulfinder.1 /«PKGBUILDDIR»/debian/disulfinder/usr/share/man/man1/ mkdir -p /«PKGBUILDDIR»/debian/disulfinder/usr/share/doc/disulfinder/examples && cp examples/res_id_* /«PKGBUILDDIR»/debian/disulfinder/usr/share/doc/disulfinder/examples/ make[2]: Leaving directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/disulfinder-data/usr/share/disulfinder mv /«PKGBUILDDIR»/debian/disulfinder/usr/share/disulfinder/Models /«PKGBUILDDIR»/debian/disulfinder-data/usr/share/disulfinder/ make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installdocs -a install -g 0 -o 0 -m 644 -p debian/README.Debian debian/disulfinder/usr/share/doc/disulfinder/README.Debian install -g 0 -o 0 -m 644 -p debian/copyright debian/disulfinder/usr/share/doc/disulfinder/copyright dh_installchangelogs -a install -o 0 -g 0 -p -m644 debian/changelog debian/disulfinder/usr/share/doc/disulfinder/changelog.Debian install -o 0 -g 0 -p -m644 ./ChangeLog debian/disulfinder/usr/share/doc/disulfinder/changelog dh_installexamples -a dh_installman -a man --recode UTF-8 ./disulfinder\.1 > disulfinder\.1\.new chmod 644 disulfinder.1.new mv -f disulfinder.1.new disulfinder.1 dh_installcatalogs -a dh_installcron -a dh_installdebconf -a install -o 0 -g 0 -d debian/disulfinder/DEBIAN dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a cd debian/disulfinder chmod a-x usr/share/man/man1/disulfinder.1 usr/share/doc/disulfinder/examples/res_id_41483.blastPsiMatTmb usr/share/doc/disulfinder/changelog.Debian usr/share/doc/disulfinder/changelog gzip -9nf usr/share/man/man1/disulfinder.1 usr/share/doc/disulfinder/examples/res_id_41483.blastPsiMatTmb usr/share/doc/disulfinder/changelog.Debian usr/share/doc/disulfinder/changelog cd '/«PKGBUILDDIR»' dh_fixperms -a find debian/disulfinder -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/disulfinder ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/disulfinder/usr/share/doc -type f ! -regex 'debian/disulfinder/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/disulfinder/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/disulfinder/usr/share/man debian/disulfinder/usr/man/ debian/disulfinder/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/disulfinder -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/disulfinder/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/disulfinder/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/disulfinder -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/disulfinder/usr/lib/perl5 debian/disulfinder/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/disulfinder/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/disulfinder/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip -a strip --remove-section=.comment --remove-section=.note debian/disulfinder/usr/bin/disulfinder dh_makeshlibs -a rm -f debian/disulfinder/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/disulfinder.substvars debian/disulfinder/usr/bin/disulfinder dpkg-shlibdeps: warning: debian/disulfinder/usr/bin/disulfinder contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/disulfinder.substvars dpkg-gencontrol -pdisulfinder -ldebian/changelog -Tdebian/disulfinder.substvars -Pdebian/disulfinder chmod 644 debian/disulfinder/DEBIAN/control chown 0:0 debian/disulfinder/DEBIAN/control dh_md5sums -a (cd debian/disulfinder >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/disulfinder/DEBIAN/md5sums chown 0:0 debian/disulfinder/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/disulfinder .. dpkg-deb: building package `disulfinder' in `../disulfinder_1.2.11-2_armhf.deb'. dpkg-genchanges -B -mbuildd >../disulfinder_1.2.11-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build disulfinder-1.2.11 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120504-2043 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ disulfinder_1.2.11-2_armhf.changes: ─────────────────────────────────── Format: 1.8 Date: Wed, 31 Aug 2011 20:47:26 +0200 Source: disulfinder Binary: disulfinder disulfinder-data Architecture: armhf Version: 1.2.11-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Laszlo Kajan Description: disulfinder - cysteines disulfide bonding state and connectivity predictor disulfinder-data - data files for predictor of disulfide bonds in proteins Closes: 639571 Changes: disulfinder (1.2.11-2) unstable; urgency=low . * added mkdir debian/disulfinder-data/usr/share/disulfinder/ to debian/rules before moving Models to disulfinder-data package to resolve building issue on certain architectures (Closes: #639571) Checksums-Sha1: b25f48d40308f6d4fc5bb677ea10fc9e2ab14d22 269636 disulfinder_1.2.11-2_armhf.deb Checksums-Sha256: be74f91301b2770d83fa7dad4a48608a05291b906df835da8e36d8eed6aa3e31 269636 disulfinder_1.2.11-2_armhf.deb Files: da1e89d2c600b0fafbe0869ea9dcb0cc 269636 science extra disulfinder_1.2.11-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ disulfinder_1.2.11-2_armhf.deb ────────────────────────────── new debian package, version 2.0. size 269636 bytes: control archive= 1137 bytes. 1297 bytes, 24 lines control 619 bytes, 8 lines md5sums Package: disulfinder Version: 1.2.11-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 592 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6), disulfinder-data Section: science Priority: extra Homepage: http://disulfind.dsi.unifi.it/ Description: cysteines disulfide bonding state and connectivity predictor 'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks. . 'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern. drwxr-xr-x root/root 0 2012-05-04 20:42 ./ drwxr-xr-x root/root 0 2012-05-04 20:42 ./usr/ drwxr-xr-x root/root 0 2012-05-04 20:42 ./usr/share/ drwxr-xr-x root/root 0 2012-05-04 20:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-04 20:43 ./usr/share/doc/disulfinder/ -rw-r--r-- root/root 542 2011-09-01 05:39 ./usr/share/doc/disulfinder/changelog.Debian.gz drwxr-xr-x root/root 0 2012-05-04 20:43 ./usr/share/doc/disulfinder/examples/ -rw-r--r-- root/root 5977 2012-05-04 20:42 ./usr/share/doc/disulfinder/examples/res_id_41483.blastPsiMatTmb.gz -rw-r--r-- root/root 3609 2012-05-04 20:42 ./usr/share/doc/disulfinder/examples/res_id_41483.expected_result -rw-r--r-- root/root 1130 2011-07-19 01:02 ./usr/share/doc/disulfinder/README.Debian -rw-r--r-- root/root 2340 2011-07-24 04:43 ./usr/share/doc/disulfinder/copyright -rw-r--r-- root/root 308 2011-08-26 03:41 ./usr/share/doc/disulfinder/changelog.gz drwxr-xr-x root/root 0 2012-05-04 20:42 ./usr/share/disulfinder/ drwxr-xr-x root/root 0 2012-05-04 20:42 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-04 20:43 ./usr/share/man/man1/ -rw-r--r-- root/root 3557 2012-05-04 20:42 ./usr/share/man/man1/disulfinder.1.gz drwxr-xr-x root/root 0 2012-05-04 20:43 ./usr/bin/ -rwxr-xr-x root/root 543308 2012-05-04 20:43 ./usr/bin/disulfinder ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libboost-dev* libboost-graph-dev* libboost-graph1.49-dev* libboost-serialization1.49-dev* libboost-serialization1.49.0* libboost-test1.49-dev* libboost-test1.49.0* libboost1.49-dev* libcroco3* libf2c2* libf2c2-dev* libffi5* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-disulfinder-dummy* 0 upgraded, 0 newly installed, 30 to remove and 0 not upgraded. After this operation, 126 MB disk space will be freed. (Reading database ... 22136 files and directories currently installed.) Removing sbuild-build-depends-disulfinder-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libboost-dev ... Removing libboost-graph-dev ... Removing libboost-graph1.49-dev ... Removing libboost-serialization1.49-dev ... Removing libboost-serialization1.49.0 ... Purging configuration files for libboost-serialization1.49.0 ... Removing libboost-test1.49-dev ... Removing libboost-test1.49.0 ... Purging configuration files for libboost-test1.49.0 ... Removing libboost1.49-dev ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libf2c2-dev ... Removing libf2c2 ... Purging configuration files for libf2c2 ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 32000 Build-Time: 551 Distribution: testing Install-Time: 84 Job: disulfinder_1.2.11-2 Package: disulfinder Package-Time: 652 Source-Version: 1.2.11-2 Space: 32000 Status: successful Version: 1.2.11-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120504-2043 Build needed 00:10:52, 32000k disc space