mia-3drigidreg

Sysnopis:

mia-3drigidreg {-i io} {-r io} {-o io} [ options ...]

Description:

This program implements the registration of two gray scale 3D images. The transformation is not penalized, therefore, one should only use translation, rigid, or affine transformations as target and run mia-3dnonrigidreg of nonrigid registration is to be achieved.

Options:

File I/O

-i, --in=(input,required)

test image. For supported file types see Plugin type: 3dimage/io

-r, --ref=(input,required)

reference image. For supported file types see Plugin type: 3dimage/io

-o, --out=(output,required)

registered output image. For supported file types see Plugin type: 3dimage/io

-t, --trans=(output)

transformation output file name. For supported file types see Plugin type: 3dtransform/io

-c, --cost=ssd

cost function. For supported plug-ins see Plugin type: 3dimage/cost

-l, --levels=3

multigrid levels

-O, --optimizer=gsl:opt=simplex,step=1.0

Optimizer used for minimization. For supported plug-ins see Plugin type: minimizer/singlecost

-f, --transForm=rigid

transformation type. For supported plug-ins see Plugin type: 3dimage/transform

Help & Info

-V, --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright

print copyright information

-h, --help

print this help

-?, --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Example:

Register image test.v to image ref.v affine and write the registered image to reg.v. Use two multiresolution levels and ssd as cost function.

mia-3drigidreg -i test.v -r ref.v -o reg.v -l 2 -f affine -c ssd

Author(s):

Gert Wollny