mia-3dfluid
{-i io
} {-r io
} {-o io
} [
options
...]
This program is used for non-rigid registration based on fluid dynamics as described in: Wollny, G. and Kruggel, F., 'Computational cost of non-rigid registration algorithms based on fluid dynamics', IEEE Transactions on Medical Imaging, 11(8), pp. 946-952, 2002, doi:10.1109/TMI.2002.803113. It uses SSD as the sole registration criterion.
input image. For supported file types see Plugin type: 3dimage/io
reference image . For supported file types see Plugin type: 3dimage/io
output vector field. For supported file types see Plugin type: 3dtransform/io
save deformed image. For supported file types see Plugin type: 3dimage/io
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
info: | Low level messages |
trace: | Function call trace |
fail: | Report test failures |
warning: | Warnings |
error: | Report errors |
debug: | Debug output |
message: | Normal messages |
fatal: | Report only fatal errors |
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
disable multi-grid processing
disable processing on the full resolution image
elasticy constant
elasticy constant
initial multigrided size
method for solving PDE
sor: | succesive overrelaxation |
sora: | Gauss Southwell relexation |
Initial stepsize
image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel
overrelaxation factor vor method sor
maxium iterations
truncation condition
intensity above which real matter is assumed (experimental)
Register image test.v to image ref.v and write the deformation vector field regfield.v. Start registration at the smallest size above 16 pixel.
mia-3dfluid -i test.v -r ref.v -o regfield.v -s 16
Gert Wollny