mia-3ddistance

Sysnopis:

mia-3ddistance {-i string} {-r string} {-o string} [ options ...]

Description:

This program takes two binary masks as input and evaluates the distance of one mask with respect to the other in voxel space. The output is given as text file with the coordinates of the source voxels and their distance to the reference mask. Correction for voxel size must be done after processing.

Options:

File IO

-i, --in-file=(input,required)

input image(s) that contain the source pixel mask

-r, --ref-file=(input,required)

reference mask to evaluate the distance from

-o, --out-file=(output,required)

output file name

Help & Info

-V, --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright

print copyright information

-h, --help

print this help

-?, --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Test

--self-test

run a self test

Example:

Evaluate the distance of the mask given in the images srcXXXX.png to the mask given in refXXXX.png and save the result to distances.txt

mia-3ddistance -i srcXXXX.png -r refXXXX.png -o distances.txt

Author(s):

Gert Wollny