mia-3dgetslice

Sysnopis:

mia-3dgetslice {-i io} {-o io} [ options ...]

Description:

This program is used to extract 2D slices from a 3D data set and store them in separate files. Output files will be numbered according to their slice index.

Options:

-i, --in-file=(input,required)

input image(s) to be filtered. For supported file types see Plugin type: 3dimage/io

-o, --out-file=(output,required)

output image(s) base name, give without extension since this will be based on the '--type' option. For supported file types see Plugin type: 2dimage/io

-t, --type=png

output file type

-s, --start=0

start slice number

-n, --number=0

number of slices (all=0)

--ndigits=4

minimum number of digits of the file name numbers

-d, --dir=xy

slice direction (xy=axial, xz=coronal, yz=saggital)

xz:get xz (coronal) slice
yz:get yz (saggital) slice
xy:get xy (axial) slice

Help & Info

-V, --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright

print copyright information

-h, --help

print this help

-?, --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Example:

Store 5 coronal slices starting at slice 120 coronalXXXX.png from image.v.

mia-3dgetslice -i image.v -o coronal -t png -n 5 -s 120

Author(s):

Gert Wollny