mia-2dfluid

Sysnopis:

mia-2dfluid {-i io} {-r io} [ options ...]

Description:

This program is used for non-rigid registration based on fluid dynamics. It uses SSD as the sole registration criterion.

Options:

File-IO

-i, --in-image=(input,required)

input (model) image to be registered. For supported file types see Plugin type: 2dimage/io

-r, --ref-image=(input,required)

reference image. For supported file types see Plugin type: 2dimage/io

-o, --out=(output)

output vector field. For supported file types see Plugin type: 2dvf/io

-d, --deformed-image=(output)

deformed registered image. For supported file types see Plugin type: 2dimage/io

Help & Info

-V, --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright

print copyright information

-h, --help

print this help

-?, --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Registration parameters

-m, --mgstart=16

multigrid start size

-e, --epsilon=0.001

optimization breaking condition

--mu=1

elasticity parameter

--lambda=1

elasticity parameter

--elastic

use elastic registration

Example:

Register image test.v to image ref.v and write the deformation vector field regfield.v. Start registration at the smallest size above 16 pixel.

mia-2dfluid -i test.v -r ref.v -o regfield.v -s 16

Author(s):

Gert Wollny