mia-3dserial-nonrigid

Sysnopis:

mia-3dserial-nonrigid {-i string} [ options ...] [ Plugin type: 3dimage/fullcost ...]

Description:

This program runs the image registration of a consecutively numbered image series. The registration is run in a serial manner, this is, only images in temporal succession (i.e. consecutive numbers) are registered, and the obtained transformations are applied accumulated to reach full registration.

Options:

File-IO

-i, --in-file=(input,required)

input perfusion data set

-o, --out-file=(output)

file name for registered fiels

Registration

-O, --optimizer=gsl:opt=gd,step=0.1

Optimizer used for minimization. For supported plug-ins see Plugin type: minimizer/singlecost

-l, --mg-levels=3

multi-resolution levels

-f, --transForm=spline

transformation type. For supported plug-ins see Plugin type: 3dimage/transform

-r, --ref=-1

reference frame (-1 == use image in the middle)

Help & Info

-V, --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright

print copyright information

-h, --help

print this help

-?, --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Example:

Run a serial registration of images inputXXXX.v (X digit) to reference image 20 and store the result in regXXXX.v. Optimize the sum of squared differences and spline transformations with coefficient rate 10.

mia-3dserial-nonrigid -i input0000.v -o 'reg%04d.v' -f spline:rate=10 -r 20 ssd

Author(s):

Gert Wollny