mia-3dcrispsegment

Sysnopis:

mia-3dcrispsegment {-i io} {-o io} [ options ...]

Description:

This program creates a label image from a fuzzy segmentation. or each pixel the label is set to the class with the higest probability plus a given offset

Options:

-i, --in-file=(input,required)

input class file, should contain multiple images with tissue class probabilities. For supported file types see Plugin type: 3dimage/io

-o, --out-file=(output,required)

output class label image. For supported file types see Plugin type: 3dimage/io

-l, --label-offset=1

label offset

Help & Info

-V, --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright

print copyright information

-h, --help

print this help

-?, --usage

print a short help

--version

print the version number and exit

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Example:

Set the labels based on the input class probability file cls.v adding the offset 2 to each label and save the result to labeled.v.

mia-3dcrispsegment -i cls.v -o labeled.v -l 2

Author(s):

Gert Wollny