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Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

_

__init__() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.gmm.GridDescriptor method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.algorithms.interpolation.ImageInterpolator method)
(nipy.algorithms.kernel_smooth.LinearFilter method)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Image4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
(nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
(nipy.algorithms.registration.transform.Transform method)
(nipy.algorithms.segmentation.vem.VEM method)
(nipy.algorithms.statistics.empirical_pvalue.FDR method)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
(nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.Factor method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Formula method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects method)
(nipy.algorithms.statistics.formula.formulae.Term method)
(nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
(nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.algorithms.statistics.models.family.varfuncs.Binomial method)
(nipy.algorithms.statistics.models.family.varfuncs.Power method)
(nipy.algorithms.statistics.models.family.varfuncs.VarianceFunction method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.FContrastResults method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.model.TContrastResults method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.AREstimator method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
(nipy.algorithms.statistics.models.utils.StepFunction method)
(nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.IntrinsicVolumes method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.algorithms.statistics.rft.fnsum method)
(nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.image.SliceMaker method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.image.roi.ContinuousROI method)
(nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROI method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.array_coords.ArrayCoordMap method)
(nipy.core.reference.array_coords.Grid method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordMapMaker method)
(nipy.core.reference.coordinate_map.CoordMapMakerError method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
(nipy.core.reference.coordinate_system.CoordSysMaker method)
(nipy.core.reference.coordinate_system.CoordSysMakerError method)
(nipy.core.reference.coordinate_system.CoordinateSystem method)
(nipy.core.reference.coordinate_system.CoordinateSystemError method)
(nipy.core.reference.spaces.AffineError method)
(nipy.core.reference.spaces.AxesError method)
(nipy.core.reference.spaces.SpaceError method)
(nipy.core.reference.spaces.SpaceTypeError method)
(nipy.interfaces.spm.SpmInfo method)
(nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.CompositionError method)
(nipy.labs.datasets.transforms.transform.Transform method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.glm.glm.glm method)
(nipy.labs.group.displacement_field.displacement_field method)
(nipy.labs.group.displacement_field.gaussian_random_field method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
(nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.MeshDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.labs.statistical_mapping.LinearModel method)
(nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
(nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)
(nipy.modalities.fmri.fmri.FmriImageList method)
(nipy.modalities.fmri.fmristat.delay.Contrast method)
(nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.fmristat.outputters.RegressionOutput method)
(nipy.modalities.fmri.fmristat.outputters.RegressionOutputList method)
(nipy.modalities.fmri.fmristat.outputters.TOutput method)
(nipy.modalities.fmri.spm.model.SecondStage method)
(nipy.testing.doctester.NipyDoctest method)
(nipy.testing.nosetester.NipyNoseTester method)

A

add_options() (nipy.testing.doctester.NipyDoctest method)
addOptions() (nipy.testing.doctester.NipyDoctest method)
adjacency() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
adjust_subsampling() (in module nipy.algorithms.registration.groupwise_registration)
Affine (class in nipy.algorithms.registration.affine)
affine (nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
(nipy.core.image.xyz_image.XYZTransform attribute)
(nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
affine() (nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.core.image.image.Image static method)
Affine2D (class in nipy.algorithms.registration.affine)
affine_img_src() (in module nipy.labs.viz_tools.maps_3d), [1]
affine_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute)
affine_transform_from_array() (in module nipy.io.nifti_ref)
AffineError (class in nipy.core.reference.spaces)
AffineImage (class in nipy.core.image.affine_image)
affines() (nipy.algorithms.registration.polyaffine.PolyAffine method)
AffineTransform (class in nipy.core.reference.coordinate_map)
(class in nipy.labs.datasets.transforms.affine_transform)
AFNI
afterContext() (nipy.testing.doctester.NipyDoctest method)
AIC() (nipy.algorithms.statistics.models.model.LikelihoodModelResults static method)
(nipy.algorithms.statistics.models.regression.RegressionResults static method)
align_to_refscan() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
all_distances() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
all_fdr() (nipy.algorithms.statistics.empirical_pvalue.FDR method)
all_fdr_gaussian() (in module nipy.algorithms.statistics.empirical_pvalue)
alpha_cmap() (in module nipy.labs.viz_tools.cm)
annotate() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
anti_symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
apart() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
append_diag() (in module nipy.algorithms.utils.affines)
append_io_dim() (in module nipy.core.reference.coordinate_map)
apply() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.algorithms.registration.transform.Transform method)
apply_affine() (in module nipy.algorithms.utils.affines)
(in module nipy.labs.datasets.transforms.affine_utils)
AR1 (class in nipy.modalities.fmri.fmristat.model)
ar_bias_correct() (in module nipy.algorithms.statistics.models.regression)
ar_bias_corrector() (in module nipy.algorithms.statistics.models.regression)
ARcomponents() (in module nipy.modalities.fmri.spm.correlation)
ARcovariance() (in module nipy.modalities.fmri.spm.correlation)
area() (nipy.labs.spatial_models.discrete_domain.MeshDomain method)
AREstimator (class in nipy.algorithms.statistics.models.regression)
args (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
(nipy.core.reference.coordinate_map.CoordMapMakerError attribute)
(nipy.core.reference.coordinate_system.CoordSysMakerError attribute)
(nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.reference.spaces.AffineError attribute)
(nipy.core.reference.spaces.AxesError attribute)
(nipy.core.reference.spaces.SpaceError attribute)
(nipy.core.reference.spaces.SpaceTypeError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
args_cnc() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
ARModel (class in nipy.algorithms.statistics.models.regression)
array_affine_coord() (in module nipy.labs.spatial_models.discrete_domain)
ArrayCoordMap (class in nipy.core.reference.array_coords)
as_affine() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
as_base_exp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_add() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_exponent() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_factors() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.Beta method)
as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.Beta method)
as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.FactorTerm method)
as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.FactorTerm method)
as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_terms() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coefficient() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_dummy() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_expr() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_image() (in module nipy.io.files)
as_independent() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_leading_term() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_numer_denom() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_ordered_factors() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_ordered_terms() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_poly() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_powers_dict() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_real_imag() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_terms() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_unittest() (in module nipy.testing.lightunit)
as_volume_img() (in module nipy.labs.datasets.converters)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
as_xyz_affable() (in module nipy.core.image.image_spaces)
assumptions0 (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
atoms() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
autocrop_img() (in module nipy.labs.viz_tools.maps_3d)
average_link_graph() (in module nipy.algorithms.clustering.hierarchical_clustering)
average_link_graph_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
average_log_like() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
averaged_loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
axes() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)
AxesError (class in nipy.core.reference.spaces)
axis0_generator() (in module nipy.modalities.fmri.fmri)

B

ball_search() (in module nipy.algorithms.statistics.rft)
bayes_factor() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
bench() (nipy.testing.nosetester.NipyNoseTester method)
best_fitting_GMM() (in module nipy.algorithms.clustering.gmm)
Beta (class in nipy.algorithms.statistics.formula.formulae)
BGMM (class in nipy.algorithms.clustering.bgmm)
bic() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
BIC() (nipy.algorithms.statistics.models.model.LikelihoodModelResults static method)
(nipy.algorithms.statistics.models.regression.RegressionResults static method)
Binomial (class in nipy.algorithms.statistics.models.family.family)
(class in nipy.algorithms.statistics.models.family.varfuncs)
binomial() (in module nipy.algorithms.statistics.rft)
bipartite_graph_from_adjacency() (in module nipy.algorithms.graph.bipartite_graph)
bipartite_graph_from_coo_matrix() (in module nipy.algorithms.graph.bipartite_graph)
BipartiteGraph (class in nipy.algorithms.graph.bipartite_graph)
BlockParadigm (class in nipy.modalities.fmri.experimental_paradigm)
blocks() (in module nipy.modalities.fmri.utils)
BOLD
bonferroni() (in module nipy.labs.statistical_mapping)
bootstrap_group() (in module nipy.labs.utils.reproducibility_measures)
bounding_box() (in module nipy.core.reference.slices)
brain_segmentation() (in module nipy.algorithms.segmentation.brain_segmentation)
BrainVisa
bsa_dpmm() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
bsa_dpmm2() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
BSD
build_LR() (in module nipy.labs.spatial_models.structural_bfls)

C

calibrate() (nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
can_configure (nipy.testing.doctester.NipyDoctest attribute)
cancel() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
CDFLink (class in nipy.algorithms.statistics.models.family.links)
centers() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
ChainTransform (class in nipy.algorithms.registration.chain_transform)
change_exponent() (nipy.algorithms.statistics.rft.ECquasi method)
check() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
check_compatible_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
check_deps() (in module nipy.utils.perlpie)
check_feature_matrices() (in module nipy.algorithms.graph.bipartite_graph)
check_output() (nipy.testing.doctester.NipyOutputChecker method)
check_pv() (nipy.algorithms.statistics.empirical_pvalue.FDR method)
check_x() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
ChiBarSquared (class in nipy.algorithms.statistics.rft)
ChiSquared (class in nipy.algorithms.statistics.rft)
clamp() (in module nipy.algorithms.registration.histogram_registration)
class_key() (nipy.algorithms.statistics.formula.formulae.Beta class method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm class method)
(nipy.algorithms.statistics.formula.formulae.Term class method)
clean() (nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.varfuncs.Binomial method)
cliques() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
CLogLog (class in nipy.algorithms.statistics.models.family.links)
closing() (nipy.algorithms.graph.field.Field method)
cluster_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
cluster_stats() (in module nipy.labs.statistical_mapping)
cluster_threshold() (in module nipy.labs.utils.reproducibility_measures)
co_labelling() (in module nipy.algorithms.clustering.imm)
coeff() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
coeffs (nipy.algorithms.statistics.rft.ECquasi attribute)
coefs (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
collect() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
combinations() (in module nipy.algorithms.statistics.utils)
combsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
compact_neighb() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
compare() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
compare_pretty() (nipy.algorithms.statistics.formula.formulae.Beta static method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm static method)
(nipy.algorithms.statistics.formula.formulae.Term static method)
compatible() (nipy.algorithms.statistics.rft.ECquasi method)
complete_graph() (in module nipy.algorithms.graph.graph)
complex() (in module nipy.algorithms.statistics.utils)
component_likelihood() (nipy.algorithms.clustering.ggmixture.GGGM method)
compose() (in module nipy.core.reference.coordinate_map)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.algorithms.registration.transform.Transform method)
composed_with() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
composed_with_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
CompositionError (class in nipy.labs.datasets.transforms.transform)
compute_BSA_loo() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_BSA_quick() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_BSA_simple() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
compute_cluster_stats() (in module nipy.labs.group.permutation_test)
compute_conditional_posterior_mean() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_individual_regions() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_inner_blocks() (nipy.labs.group.displacement_field.displacement_field method)
compute_leading_term() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
compute_log_conditional_displacements_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_conditional_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_prior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_region_likelihood() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_region_likelihood_slow() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_voxel_likelihood() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_marginal_likelihood() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_mask() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_files() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_sessions() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_region_stat() (in module nipy.labs.group.permutation_test)
compute_regressor() (in module nipy.modalities.fmri.hemodynamic_models)
concatenate_graphs() (in module nipy.algorithms.graph.graph)
conditional_posterior_proba() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
conf_int() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
configuration() (in module nipy.algorithms.statistics.models.setupscons)
configure() (nipy.testing.doctester.NipyDoctest method)
configure_optimizer() (in module nipy.algorithms.registration.optimizer)
conjugate() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
conjunction() (in module nipy.labs.utils.reproducibility_measures)
connected_components() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
constrained_voronoi() (nipy.algorithms.graph.field.Field method)
cont() (nipy.algorithms.statistics.models.glm.Model method)
ContinuousROI (class in nipy.core.image.roi)
contour_map() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
contrast (class in nipy.labs.glm.glm)
Contrast (class in nipy.modalities.fmri.fmristat.delay)
contrast() (nipy.labs.glm.glm.glm method)
(nipy.labs.statistical_mapping.LinearModel method)
contrast_from_cols_or_rows() (in module nipy.algorithms.statistics.formula.formulae)
convolve_functions() (in module nipy.modalities.fmri.utils)
coord_bsa() (in module nipy.labs.utils.reproducibility_measures)
coord_dtype (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_names (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_sys (nipy.core.image.affine_image.AffineImage attribute)
coord_sys_klass (nipy.core.reference.coordinate_system.CoordSysMaker attribute)
coord_transform() (in module nipy.labs.viz_tools.coord_tools)
CoordinateMap (class in nipy.core.reference.coordinate_map)
CoordinateMapROI (class in nipy.core.image.roi)
CoordinateSystem (class in nipy.core.reference.coordinate_system)
CoordinateSystemError (class in nipy.core.reference.coordinate_system)
coordmap (nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.image.Image attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
CoordMapMaker (class in nipy.core.reference.coordinate_map)
CoordMapMakerError (class in nipy.core.reference.coordinate_map)
CoordSysMaker (class in nipy.core.reference.coordinate_system)
CoordSysMakerError (class in nipy.core.reference.coordinate_system)
copy() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
CorrelationCoefficient (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatio (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatioL1 (class in nipy.algorithms.registration.similarity_measures)
could_extract_minus_sign() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
count() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
count_ops() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
cov() (nipy.algorithms.statistics.formula.formulae.RandomEffects method)
cross_eps() (in module nipy.algorithms.graph.bipartite_graph)
cross_knn() (in module nipy.algorithms.graph.bipartite_graph)
cross_validated_update() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
cube_with_strides_center() (in module nipy.algorithms.statistics.utils)
custom_watershed() (nipy.algorithms.graph.field.Field method)
cut_redundancies() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)

D

data_generator() (in module nipy.core.utils.generators)
decompose2d() (in module nipy.algorithms.statistics.utils)
decompose3d() (in module nipy.algorithms.statistics.utils)
def_model (nipy.labs.statistical_mapping.LinearModel attribute)
def_niter (nipy.labs.statistical_mapping.LinearModel attribute)
default_assumptions (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
define() (in module nipy.algorithms.statistics.formula.formulae)
(in module nipy.modalities.fmri.utils)
define_graph_attributes() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
degrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
demo_ortho_slicer() (in module nipy.labs.viz_tools.ortho_slicer)
demo_plot_map() (in module nipy.labs.viz_tools.activation_maps)
demo_plot_map_3d() (in module nipy.labs.viz_tools.maps_3d)
denom_poly() (nipy.algorithms.statistics.rft.ECquasi method)
density() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
depth_from_leaves() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
deriv() (nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.algorithms.statistics.rft.ECquasi method)
design() (nipy.algorithms.statistics.formula.formulae.Factor method)
(nipy.algorithms.statistics.formula.formulae.Formula method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects method)
design_expr (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
DesignMatrix (class in nipy.modalities.fmri.design_matrix)
detsh() (in module nipy.algorithms.clustering.bgmm)
deviance() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
(nipy.algorithms.statistics.models.glm.Model method)
devresid() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
diff() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
diffusion() (nipy.algorithms.graph.field.Field method)
dijkstra() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
dilation() (nipy.algorithms.graph.field.Field method)
dim_cmap() (in module nipy.labs.viz_tools.cm)
dirichlet_eval() (in module nipy.algorithms.clustering.bgmm)
DiscreteDomain (class in nipy.labs.spatial_models.discrete_domain)
DiscreteParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
DiscreteROI (class in nipy.core.image.roi)
displacement_field (class in nipy.labs.group.displacement_field)
dist2loss() (in module nipy.algorithms.registration.similarity_measures)
dkl_dirichlet() (in module nipy.algorithms.clustering.bgmm)
dkl_gaussian() (in module nipy.algorithms.clustering.bgmm)
dkl_wishart() (in module nipy.algorithms.clustering.bgmm)
dmtx_from_csv() (in module nipy.modalities.fmri.design_matrix)
dmtx_light() (in module nipy.modalities.fmri.design_matrix)
doctest_case_class (nipy.testing.doctester.NipyDoctest attribute)
doctest_ignore (nipy.testing.doctester.NipyDoctest attribute)
doctest_optflags (nipy.testing.doctester.NipyDoctest attribute)
doit() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
domain_from_binary_array() (in module nipy.labs.spatial_models.discrete_domain)
domain_from_image() (in module nipy.labs.spatial_models.discrete_domain)
domain_from_mesh() (in module nipy.labs.spatial_models.discrete_domain)
dpmm() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
draw_cross() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
draw_samples() (in module nipy.labs.utils.reproducibility_measures)
drop_io_dim() (in module nipy.core.reference.coordinate_map)
DTI
dtype (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
(nipy.core.reference.coordinate_system.CoordinateSystem attribute)
dummy_eq() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
dummy_index (nipy.algorithms.statistics.formula.formulae.Beta attribute)
dump() (nipy.labs.statistical_mapping.LinearModel method)
DWI

E

ECcone (class in nipy.algorithms.statistics.rft)
ECDF() (in module nipy.algorithms.statistics.models.utils)
ECquasi (class in nipy.algorithms.statistics.rft)
edge_map() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
EEGlab
em() (in module nipy.labs.group.mixed_effects)
enabled (nipy.testing.doctester.NipyDoctest attribute)
enableOpt (nipy.testing.doctester.NipyDoctest attribute)
eps_nn() (in module nipy.algorithms.graph.graph)
equivalent() (in module nipy.core.reference.coordinate_map)
erosion() (nipy.algorithms.graph.field.Field method)
Estep() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
estimate() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
estimate_displacements_SA() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
estimate_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
estimate_mean() (in module nipy.algorithms.statistics.onesample)
estimate_means() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
estimate_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
estimate_pooled_covariance() (in module nipy.modalities.fmri.spm.model)
estimate_robust_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
estimate_scale() (nipy.algorithms.statistics.models.glm.Model method)
estimate_varatio() (in module nipy.algorithms.statistics.onesample)
estimate_weights() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
estimateAR() (in module nipy.modalities.fmri.fmristat.model)
euclidean_distance() (in module nipy.algorithms.utils.fast_distance)
eval() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
evalf() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
evaluate() (nipy.algorithms.interpolation.ImageInterpolator method)
(nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
event_design() (in module nipy.modalities.fmri.design)
EventRelatedParadigm (class in nipy.modalities.fmri.experimental_paradigm)
events() (in module nipy.modalities.fmri.utils)
evidence() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
example_cv_nonoise() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
example_noisy() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
excludes (nipy.testing.nosetester.NipyNoseTester attribute)
execute() (nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.spm.model.SecondStage method)
expand() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
explore() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
extension (nipy.testing.doctester.NipyDoctest attribute)
extract_additively() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
extract_clusters_from_diam() (in module nipy.labs.group.permutation_test)
extract_clusters_from_graph() (in module nipy.labs.group.permutation_test)
extract_clusters_from_thresh() (in module nipy.labs.group.permutation_test)
extract_multiplicatively() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)

F

f_generator() (in module nipy.core.utils.generators)
F_overall() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
Factor (class in nipy.algorithms.statistics.formula.formulae)
factor() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
FactorTerm (class in nipy.algorithms.statistics.formula.formulae)
Family (class in nipy.algorithms.statistics.models.family.family)
fancy_plot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
fancy_plot_() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
Fcontrast() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
FContrastResults (class in nipy.algorithms.statistics.models.model)
FDR (class in nipy.algorithms.statistics.empirical_pvalue)
fdr() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
fdrcurve() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
feature() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
feature_to_voxel_map() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
Field (class in nipy.algorithms.graph.field)
field_from_coo_matrix_and_data() (in module nipy.algorithms.graph.field)
field_from_graph_and_data() (in module nipy.algorithms.graph.field)
find() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
find_cut_coords() (in module nipy.labs.viz_tools.coord_tools)
find_mni_template() (in module nipy.labs.viz_tools.anat_cache)
fit() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
(nipy.labs.glm.glm.glm method)
fitted() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
fixed_parcellation() (in module nipy.labs.spatial_models.parcel_io)
flip() (in module nipy.core.image.xyz_image)
floyd() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
fltcols() (in module nipy.interfaces.spm)
Fmask() (in module nipy.modalities.fmri.spm.model)
fmin_steepest() (in module nipy.algorithms.optimize)
FMRI
FmriImageList (class in nipy.modalities.fmri.fmri)
FmriRealign4d (class in nipy.algorithms.registration.groupwise_registration)
fname_presuffix() (in module nipy.interfaces.spm)
fnames_presuffix() (in module nipy.interfaces.spm)
fnsum (class in nipy.algorithms.statistics.rft)
Forest (class in nipy.algorithms.graph.forest)
Formula (class in nipy.algorithms.statistics.formula.formulae)
formula (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
fourier_basis() (in module nipy.modalities.fmri.design)
(in module nipy.modalities.fmri.utils)
fpw_opt_str() (in module nipy.testing.nosetester)
free_data() (nipy.algorithms.registration.groupwise_registration.Image4d method)
free_energy() (nipy.algorithms.segmentation.vem.VEM method)
free_symbols (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
from_3d_grid() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
from_image() (nipy.core.image.image_list.ImageList class method)
(nipy.core.image.xyz_image.XYZImage static method)
(nipy.modalities.fmri.fmri.FmriImageList class method)
from_matrix44() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
from_matrix_vector() (in module nipy.core.transforms.affines)
(in module nipy.labs.datasets.transforms.affine_utils)
from_params() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
from_shape() (nipy.core.reference.array_coords.ArrayCoordMap static method)
from_start_step() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
fromarray() (in module nipy.core.image.image)
fromcol() (nipy.algorithms.statistics.formula.formulae.Factor static method)
fromiter() (nipy.algorithms.statistics.formula.formulae.Beta class method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm class method)
(nipy.algorithms.statistics.formula.formulae.Term class method)
fromrec() (nipy.algorithms.statistics.formula.formulae.Factor static method)
(nipy.algorithms.statistics.formula.formulae.Formula static method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects static method)
FSL
FStat (class in nipy.algorithms.statistics.rft)
fttest() (in module nipy.labs.utils.reproducibility_measures)
full_rank() (in module nipy.algorithms.utils.matrices)
func (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
function (nipy.core.reference.coordinate_map.CoordinateMap attribute)
function_domain (nipy.core.image.xyz_image.XYZTransform attribute)
(nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
function_range (nipy.core.image.xyz_image.XYZTransform attribute)
(nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
fusion() (in module nipy.algorithms.clustering.hierarchical_clustering)
fwhm2resel() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
fwhm2sigma() (in module nipy.algorithms.kernel_smooth)

G

Gamma (class in nipy.algorithms.clustering.ggmixture)
(class in nipy.algorithms.statistics.models.family.family)
gamma_difference_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
gamma_expr() (in module nipy.modalities.fmri.hrf)
Gamma_Gaussian_fit() (in module nipy.algorithms.statistics.empirical_pvalue)
gamma_params() (in module nipy.modalities.fmri.hrf)
gauss_dist() (in module nipy.algorithms.segmentation.vem)
Gaussian (class in nipy.algorithms.statistics.models.family.family)
gaussian_fdr_threshold() (in module nipy.algorithms.statistics.empirical_pvalue)
gaussian_random_field (class in nipy.labs.group.displacement_field)
generate_normals() (in module nipy.algorithms.clustering.bgmm)
generate_output() (in module nipy.modalities.fmri.fmristat.model)
generate_perm() (in module nipy.algorithms.clustering.bgmm)
generate_Wishart() (in module nipy.algorithms.clustering.bgmm)
generic_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute)
geodesic_kmeans() (nipy.algorithms.graph.field.Field method)
get_3d_peaks() (in module nipy.labs.statistical_mapping)
get_affine() (in module nipy.algorithms.registration.image_utils)
get_bounds() (in module nipy.labs.datasets.transforms.affine_utils)
get_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
get_cluster_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures)
get_coord() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_data() (nipy.algorithms.registration.groupwise_registration.Image4d method)
(nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_descendents() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
get_E() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
get_field() (nipy.algorithms.graph.field.Field method)
get_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
get_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_inverse() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
get_leaves_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
get_local_maxima() (nipy.algorithms.graph.field.Field method)
get_local_volume() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_mask_bounds() (in module nipy.labs.viz_tools.coord_tools)
get_parents() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
get_peak_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures)
get_pkg_info() (in module nipy.pkg_info)
get_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_size() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_term() (nipy.algorithms.statistics.formula.formulae.Factor method)
get_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_V() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_vertices() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_volume() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_world_coords() (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
getn() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
getO() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
getomega() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
getparams() (in module nipy.algorithms.statistics.formula.formulae)
getterms() (in module nipy.algorithms.statistics.formula.formulae)
getTestCaseNames() (in module nipy.testing.nosepatch)
getZ() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
GGGM (class in nipy.algorithms.clustering.ggmixture)
GGM (class in nipy.algorithms.clustering.ggmixture)
glm (class in nipy.labs.glm.glm)
glover_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
glover_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
GLSModel (class in nipy.algorithms.statistics.models.regression)
GMM (class in nipy.algorithms.clustering.gmm)
GPL
Graph (class in nipy.algorithms.graph.graph)
graph_3d_grid() (in module nipy.algorithms.graph.graph)
Grid (class in nipy.core.reference.array_coords)
grid_domain_from_binary_array() (in module nipy.labs.spatial_models.discrete_domain)
grid_domain_from_image() (in module nipy.labs.spatial_models.discrete_domain)
grid_domain_from_shape() (in module nipy.labs.spatial_models.discrete_domain)
GridDescriptor (class in nipy.algorithms.clustering.gmm)
group_reproducibility_metrics() (in module nipy.labs.utils.reproducibility_measures)
guess_priors() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
guess_regularizing() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)

H

has() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
has_intercept() (nipy.algorithms.statistics.models.glm.Model static method)
(nipy.algorithms.statistics.models.regression.ARModel static method)
(nipy.algorithms.statistics.models.regression.GLSModel static method)
(nipy.algorithms.statistics.models.regression.OLSModel static method)
(nipy.algorithms.statistics.models.regression.WLSModel static method)
header (nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.image.Image attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
height_threshold() (nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
help() (nipy.testing.doctester.NipyDoctest method)
HierarchicalROI (class in nipy.labs.spatial_models.hroi)
highest_neighbor() (nipy.algorithms.graph.field.Field method)
histo_repro() (in module nipy.labs.utils.reproducibility_measures)
HistogramRegistration (class in nipy.algorithms.registration.histogram_registration)
homogeneity() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
Hotelling (class in nipy.algorithms.statistics.rft)
hparcel() (in module nipy.labs.spatial_models.hierarchical_parcellation)
hpd() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
hroi_agglomeration() (in module nipy.labs.spatial_models.hroi)
HROI_as_discrete_domain_blobs() (in module nipy.labs.spatial_models.hroi)
HROI_from_watershed() (in module nipy.labs.spatial_models.hroi)

I

ICA
ideal_spacing() (in module nipy.algorithms.registration.histogram_registration)
identity() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
idx_affine_coord() (in module nipy.labs.spatial_models.discrete_domain)
if_datasource() (in module nipy.testing.decorators)
if_example_data() (in module nipy.testing.decorators)
if_templates() (in module nipy.testing.decorators)
Image (class in nipy.core.image.image)
Image4d (class in nipy.algorithms.registration.groupwise_registration)
ImageInterpolator (class in nipy.algorithms.interpolation)
ImageList (class in nipy.core.image.image_list)
IMM (class in nipy.algorithms.clustering.imm)
index() (nipy.core.reference.coordinate_system.CoordinateSystem method)
information() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
init() (nipy.algorithms.clustering.ggmixture.GGGM method)
init_displacement_blocks() (nipy.labs.group.displacement_field.displacement_field method)
init_fdr() (nipy.algorithms.clustering.ggmixture.GGGM method)
init_hidden_variables() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
init_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
initialize() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
initialize_and_estimate() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
initialize_parameters() (in module nipy.algorithms.segmentation.brain_segmentation)
input_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.transforms.transform.Transform attribute)
integ() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
integrate() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
interp (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
interp() (in module nipy.modalities.fmri.utils)
interp_slice_order() (in module nipy.algorithms.registration.groupwise_registration)
interpolation (nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
intersect_masks() (in module nipy.labs.mask)
IntrinsicVolumes (class in nipy.algorithms.statistics.rft)
inv() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
inverse() (nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
inverse_affine() (in module nipy.algorithms.registration.affine)
inverse_function (nipy.core.reference.coordinate_map.CoordinateMap attribute)
inverse_mapping (nipy.labs.datasets.transforms.transform.Transform attribute)
inverse_mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
InverseGaussian (class in nipy.algorithms.statistics.models.family.family)
invert() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
invertR() (in module nipy.modalities.fmri.fmristat.invert)
is_Add (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_AlgebraicNumber (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Atom (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Boolean (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_bounded (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_commutative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_comparable (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_complex (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_composite (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_connected() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
is_Derivative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_direct (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
is_Dummy (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Equality (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_even (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_factor() (in module nipy.algorithms.statistics.formula.formulae)
is_factor_term() (in module nipy.algorithms.statistics.formula.formulae)
is_finite (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Float (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_formula() (in module nipy.algorithms.statistics.formula.formulae)
is_Function (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_hypergeometric() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_image() (in module nipy.core.image.image)
is_imaginary (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_infinitesimal (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Integer (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_integer (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_Integer (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_integer (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Integer (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_irrational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Mul (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_negative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_noninteger (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_nonnegative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_nonpositive (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_nonzero (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Not (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Number (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_number (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_Number (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_number (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Number (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_NumberSymbol (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_odd (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Order (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Piecewise (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Poly (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_polynomial() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_positive (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Pow (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_prime (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Rational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_rational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_Rational (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_rational (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Rational (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_rational_function() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_Real (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_real (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_Real (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_real (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Real (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Relational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Symbol (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_term() (in module nipy.algorithms.statistics.formula.formulae)
is_unbounded (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Wild (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_xyz_affable() (in module nipy.core.image.image_spaces)
(in module nipy.core.reference.spaces)
is_zero (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
isestimable() (in module nipy.algorithms.statistics.models.regression)
isleaf() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
isolated() (in module nipy.labs.utils.random_threshold)
isroot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
iter_axis() (in module nipy.core.image.image)
iter_basic_args() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
iterative_fit() (nipy.algorithms.statistics.models.regression.ARModel method)

J

join_complexes() (in module nipy.algorithms.statistics.utils)

K

kmeans() (in module nipy.algorithms.clustering.clustering)
knn() (in module nipy.algorithms.graph.graph)
knownfailure() (in module nipy.testing.decorators)
kruskal() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)

L

lambdify_t() (in module nipy.modalities.fmri.utils)
LandmarkRegions (class in nipy.labs.spatial_models.structural_bfls)
laplace_dist() (in module nipy.algorithms.segmentation.vem)
largest_cc() (in module nipy.labs.mask)
leadterm() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
learn() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
leaves_of_a_subtree() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
left_compose() (nipy.algorithms.registration.polyaffine.PolyAffine method)
left_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
LGPL
like_from_data() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
likelihood_under_the_prior() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
LikelihoodModel (class in nipy.algorithms.statistics.models.model)
LikelihoodModelResults (class in nipy.algorithms.statistics.models.model)
lil_cc() (in module nipy.algorithms.graph.graph)
limit() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
linear_interp() (in module nipy.modalities.fmri.utils)
linear_model_fit() (in module nipy.labs.statistical_mapping)
LinearFilter (class in nipy.algorithms.kernel_smooth)
LinearModel (class in nipy.labs.statistical_mapping)
Link (class in nipy.algorithms.statistics.models.family.links)
link (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
links (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
list_of_neighbors() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
list_of_subtrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
load() (in module nipy.io.files)
(in module nipy.labs.glm.glm)
load_protocol_from_csv_file() (in module nipy.modalities.fmri.experimental_paradigm)
loadTestsFromFile() (nipy.testing.doctester.NipyDoctest method)
loadTestsFromModule() (nipy.testing.doctester.NipyDoctest method)
local_maxima() (nipy.algorithms.graph.field.Field method)
Log (class in nipy.algorithms.statistics.models.family.links)
log_density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
log_gammainv_pdf() (in module nipy.labs.group.spatial_relaxation_onesample)
log_gaussian_pdf() (in module nipy.labs.group.spatial_relaxation_onesample)
log_likelihood_ratio() (in module nipy.labs.group.mixed_effects)
log_weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
Logit (class in nipy.algorithms.statistics.models.family.links)
logL() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.LikelihoodModelResults static method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.RegressionResults static method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
lseries() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)

M

m2screenshot() (in module nipy.labs.viz_tools.maps_3d)
mad() (in module nipy.algorithms.statistics.models.utils)
main() (in module nipy.algorithms.clustering.imm)
(in module nipy.utils.perlpie)
main_cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
main_effect (nipy.algorithms.statistics.formula.formulae.Factor attribute)
make_affine() (nipy.core.reference.coordinate_map.CoordMapMaker method)
make_bsa_image() (in module nipy.labs.spatial_models.bsa_io)
make_cmap() (nipy.core.reference.coordinate_map.CoordMapMaker method)
make_dmtx() (in module nipy.modalities.fmri.design_matrix)
make_dummy() (in module nipy.algorithms.statistics.formula.formulae)
make_feature() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
make_feature_from_image() (nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
make_forest() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
make_graph() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
make_grid() (in module nipy.algorithms.registration.groupwise_registration)
(nipy.algorithms.clustering.gmm.GridDescriptor method)
make_hroi_from_subdomain() (in module nipy.labs.spatial_models.hroi)
make_job() (in module nipy.interfaces.spm)
make_label_dec() (in module nipy.testing.decorators)
make_recarray() (in module nipy.algorithms.statistics.formula.formulae)
makeTest() (nipy.testing.doctester.NipyDoctest method)
map_label() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
map_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
mapping (nipy.labs.datasets.transforms.transform.Transform attribute)
mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
mask() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
mask_parcellation() (in module nipy.labs.spatial_models.parcel_io)
match() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
matches() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
(nipy.testing.doctester.NipyDoctest method)
Matlab
matrix44() (in module nipy.algorithms.registration.affine)
matrix_generator() (in module nipy.core.utils.generators)
matrix_rank() (in module nipy.algorithms.utils.matrices)
max_dist() (in module nipy.labs.group.permutation_test)
mean (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
merge_ascending() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
merge_descending() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
merge_simple_branches() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
MeshDomain (class in nipy.labs.spatial_models.discrete_domain)
message (nipy.core.reference.coordinate_map.CoordMapMakerError attribute)
(nipy.core.reference.coordinate_system.CoordSysMakerError attribute)
(nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.reference.spaces.AffineError attribute)
(nipy.core.reference.spaces.AxesError attribute)
(nipy.core.reference.spaces.SpaceError attribute)
(nipy.core.reference.spaces.SpaceTypeError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
metadata (nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.image.Image attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
(nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_field.VolumeField attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
mfx_ttest() (in module nipy.labs.utils.reproducibility_measures)
MixedIMM (class in nipy.algorithms.clustering.imm)
mixture_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
mixture_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
mlab_tempfile() (in module nipy.interfaces.matlab)
Model (class in nipy.algorithms.statistics.models.glm)
(class in nipy.algorithms.statistics.models.model)
model_generator() (in module nipy.modalities.fmri.fmristat.model)
ModelOutputImage (class in nipy.modalities.fmri.fmristat.model)
monotone_fn_inverter() (in module nipy.algorithms.statistics.models.utils)
MSE() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
MSR() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
mst() (in module nipy.algorithms.graph.graph)
MST() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
Mstep() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
mu_ball() (in module nipy.algorithms.statistics.rft)
mu_sphere() (in module nipy.algorithms.statistics.rft)
MultilinearForm (class in nipy.algorithms.statistics.rft)
multinomial() (in module nipy.algorithms.clustering.bgmm)
MultiSubjectParcellation (class in nipy.labs.spatial_models.parcellation)
multivariate_stat (class in nipy.labs.group.spatial_relaxation_onesample)
MutualInformation (class in nipy.algorithms.registration.similarity_measures)

N

n() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
name (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
(nipy.core.reference.coordinate_system.CoordinateSystem attribute)
(nipy.testing.doctester.NipyDoctest attribute)
natural_spline() (in module nipy.algorithms.statistics.formula.formulae)
(in module nipy.modalities.fmri.design)
NDGridDomain (class in nipy.labs.spatial_models.discrete_domain)
ndim (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
ndim() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)
ndims (nipy.core.image.xyz_image.XYZTransform attribute)
(nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
needs_review() (in module nipy.testing.decorators)
next() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.modalities.fmri.fmri.FmriImageList method)
ni_affine_pixdim_from_affine() (in module nipy.io.nifti_ref)
nipy.algorithms.clustering.bgmm (module)
nipy.algorithms.clustering.clustering (module)
nipy.algorithms.clustering.ggmixture (module)
nipy.algorithms.clustering.gmm (module)
nipy.algorithms.clustering.hierarchical_clustering (module)
nipy.algorithms.clustering.imm (module)
nipy.algorithms.clustering.von_mises_fisher_mixture (module)
nipy.algorithms.diagnostics.screens (module)
nipy.algorithms.diagnostics.timediff (module)
nipy.algorithms.diagnostics.tsdiffplot (module)
nipy.algorithms.fwhm (module)
nipy.algorithms.graph.bipartite_graph (module)
nipy.algorithms.graph.field (module)
nipy.algorithms.graph.forest (module)
nipy.algorithms.graph.graph (module)
nipy.algorithms.interpolation (module)
nipy.algorithms.kernel_smooth (module)
nipy.algorithms.optimize (module)
nipy.algorithms.registration.affine (module)
nipy.algorithms.registration.chain_transform (module)
nipy.algorithms.registration.groupwise_registration (module)
nipy.algorithms.registration.histogram_registration (module)
nipy.algorithms.registration.image_utils (module)
nipy.algorithms.registration.optimizer (module)
nipy.algorithms.registration.polyaffine (module)
nipy.algorithms.registration.resample (module)
nipy.algorithms.registration.similarity_measures (module)
nipy.algorithms.registration.transform (module)
nipy.algorithms.resample (module)
nipy.algorithms.segmentation.brain_segmentation (module)
nipy.algorithms.segmentation.vem (module)
nipy.algorithms.statistics.empirical_pvalue (module)
nipy.algorithms.statistics.formula.formulae (module)
nipy.algorithms.statistics.models.family.family (module)
nipy.algorithms.statistics.models.family.links (module)
nipy.algorithms.statistics.models.family.varfuncs (module)
nipy.algorithms.statistics.models.glm (module)
nipy.algorithms.statistics.models.model (module)
nipy.algorithms.statistics.models.nlsmodel (module)
nipy.algorithms.statistics.models.regression (module)
nipy.algorithms.statistics.models.setupscons (module)
nipy.algorithms.statistics.models.utils (module)
nipy.algorithms.statistics.onesample (module)
nipy.algorithms.statistics.rft (module)
nipy.algorithms.statistics.utils (module)
nipy.algorithms.utils.affines (module)
nipy.algorithms.utils.fast_distance (module)
nipy.algorithms.utils.matrices (module)
nipy.algorithms.utils.pca (module)
nipy.core.image.affine_image (module)
nipy.core.image.image (module)
nipy.core.image.image_list (module)
nipy.core.image.image_spaces (module)
nipy.core.image.roi (module)
nipy.core.image.xyz_image (module)
nipy.core.reference.array_coords (module)
nipy.core.reference.coordinate_map (module)
nipy.core.reference.coordinate_system (module)
nipy.core.reference.slices (module)
nipy.core.reference.spaces (module)
nipy.core.transforms.affines (module)
nipy.core.utils.generators (module)
nipy.interfaces.matlab (module)
nipy.interfaces.spm (module)
nipy.io.files (module)
nipy.io.nifti_ref (module)
nipy.labs.datasets.converters (module)
nipy.labs.datasets.transforms.affine_transform (module)
nipy.labs.datasets.transforms.affine_utils (module)
nipy.labs.datasets.transforms.transform (module)
nipy.labs.datasets.volumes.volume_data (module)
nipy.labs.datasets.volumes.volume_field (module)
nipy.labs.datasets.volumes.volume_grid (module)
nipy.labs.datasets.volumes.volume_img (module)
nipy.labs.glm.glm (module)
nipy.labs.group.displacement_field (module)
nipy.labs.group.mixed_effects (module)
nipy.labs.group.permutation_test (module)
nipy.labs.group.spatial_relaxation_onesample (module)
nipy.labs.mask (module)
nipy.labs.spatial_models.bayesian_structural_analysis (module)
nipy.labs.spatial_models.bsa_io (module)
nipy.labs.spatial_models.discrete_domain (module)
nipy.labs.spatial_models.hierarchical_parcellation (module)
nipy.labs.spatial_models.hroi (module)
nipy.labs.spatial_models.mroi (module)
nipy.labs.spatial_models.parcel_io (module)
nipy.labs.spatial_models.parcellation (module)
nipy.labs.spatial_models.structural_bfls (module)
nipy.labs.statistical_mapping (module)
nipy.labs.utils.random_threshold (module)
nipy.labs.utils.reproducibility_measures (module)
nipy.labs.utils.simul_multisubject_fmri_dataset (module)
nipy.labs.utils.zscore (module)
nipy.labs.viz_tools.activation_maps (module)
nipy.labs.viz_tools.anat_cache (module)
nipy.labs.viz_tools.cm (module)
nipy.labs.viz_tools.coord_tools (module)
nipy.labs.viz_tools.maps_3d (module)
nipy.labs.viz_tools.ortho_slicer (module)
nipy.labs.viz_tools.test.test_activation_maps (module)
nipy.labs.viz_tools.test.test_cm (module)
nipy.labs.viz_tools.test.test_coord_tools (module)
nipy.labs.viz_tools.test.test_edge_detect (module)
nipy.labs.viz_tools.test.test_ortho_slicer (module)
nipy.modalities.fmri.design (module)
nipy.modalities.fmri.design_matrix (module)
nipy.modalities.fmri.experimental_paradigm (module)
nipy.modalities.fmri.fmri (module)
nipy.modalities.fmri.fmristat.delay (module)
nipy.modalities.fmri.fmristat.hrf (module)
nipy.modalities.fmri.fmristat.invert (module)
nipy.modalities.fmri.fmristat.model (module)
nipy.modalities.fmri.fmristat.outputters (module)
nipy.modalities.fmri.hemodynamic_models (module)
nipy.modalities.fmri.hrf (module)
nipy.modalities.fmri.spm.correlation (module)
nipy.modalities.fmri.spm.model (module)
nipy.modalities.fmri.spm.reml (module)
nipy.modalities.fmri.spm.trace (module)
nipy.modalities.fmri.utils (module)
nipy.pkg_info (module)
nipy.testing.decorators (module)
nipy.testing.doctester (module)
nipy.testing.lightunit (module)
nipy.testing.nosepatch (module)
nipy.testing.nosetester (module)
nipy.utils.arrays (module)
nipy.utils.perlpie (module)
nipy.utils.skip_test (module)
NipyDoctest (class in nipy.testing.doctester)
NipyNoseTester (class in nipy.testing.nosetester)
NipyOutputChecker (class in nipy.testing.doctester)
niter (nipy.algorithms.statistics.models.glm.Model attribute)
NLSModel (class in nipy.algorithms.statistics.models.nlsmodel)
nonzero() (in module nipy.algorithms.registration.similarity_measures)
(in module nipy.labs.group.mixed_effects)
norm_resid() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
normal() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
normal_eval() (in module nipy.algorithms.clustering.bgmm)
NormalEmpiricalNull (class in nipy.algorithms.statistics.empirical_pvalue)
normalization (nipy.algorithms.kernel_smooth.LinearFilter attribute)
normalize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
NormalizedMutualInformation (class in nipy.algorithms.registration.similarity_measures)
npoints() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
nseries() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
nsimplify() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)

O

OLS (class in nipy.modalities.fmri.fmristat.model)
ols() (in module nipy.labs.glm.glm)
OLSModel (class in nipy.algorithms.statistics.models.regression)
onesample_stat() (in module nipy.labs.group.permutation_test)
onesample_test() (in module nipy.labs.statistical_mapping)
OneSidedF (class in nipy.algorithms.statistics.rft)
opening() (nipy.algorithms.graph.field.Field method)
optimize() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
options() (nipy.testing.doctester.NipyDoctest method)
order (nipy.algorithms.statistics.rft.ECquasi attribute)
orth() (in module nipy.modalities.fmri.spm.reml)
OrthoSlicer (class in nipy.labs.viz_tools.ortho_slicer)
out_check_class (nipy.testing.doctester.NipyDoctest attribute)
output_AR1() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
output_difference() (nipy.testing.doctester.NipyOutputChecker method)
output_F() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
output_resid() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
output_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.transforms.transform.Transform attribute)
output_T() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
overall_loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)

P

Paradigm (class in nipy.modalities.fmri.experimental_paradigm)
param (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
(nipy.algorithms.registration.chain_transform.ChainTransform attribute)
(nipy.algorithms.registration.polyaffine.PolyAffine attribute)
(nipy.algorithms.registration.transform.Transform attribute)
param_inds (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
parameters() (nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
params (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
parcel_input() (in module nipy.labs.spatial_models.parcel_io)
parcellation_based_analysis() (in module nipy.labs.spatial_models.parcel_io)
parcels() (in module nipy.core.utils.generators)
partition() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
ParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
PCA
pca() (in module nipy.algorithms.utils.pca)
pca_image() (in module nipy.algorithms.utils.pca)
peak_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
peak_XYZ() (in module nipy.labs.group.permutation_test)
perl_dash_pie() (in module nipy.utils.perlpie)
perm_prfx() (in module nipy.labs.spatial_models.hierarchical_parcellation)
permutation_test (class in nipy.labs.group.permutation_test)
permutation_test_onesample (class in nipy.labs.group.permutation_test)
permutation_test_onesample_graph (class in nipy.labs.group.permutation_test)
permutation_test_twosample (class in nipy.labs.group.permutation_test)
PET
pkg_commit_hash() (in module nipy.pkg_info)
plot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
plot2() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
plot2D() (in module nipy.algorithms.clustering.gmm)
plot_anat() (in module nipy.labs.viz_tools.activation_maps)
plot_anat_3d() (in module nipy.labs.viz_tools.maps_3d), [1]
plot_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
plot_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
plot_map() (in module nipy.labs.viz_tools.activation_maps), [1]
(nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
plot_map_3d() (in module nipy.labs.viz_tools.maps_3d), [1]
plot_tsdiffs() (in module nipy.algorithms.diagnostics.tsdiffplot)
plot_tsdiffs_image() (in module nipy.algorithms.diagnostics.tsdiffplot)
plugin() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
Poisson (class in nipy.algorithms.statistics.models.family.family)
PolyAffine (class in nipy.algorithms.registration.polyaffine)
pool() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
pop() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
population() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
pos_recipr() (in module nipy.algorithms.utils.matrices)
posterior() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
Power (class in nipy.algorithms.statistics.models.family.links)
(class in nipy.algorithms.statistics.models.family.varfuncs)
powsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
pre_rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
precond (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
preconditioner() (in module nipy.algorithms.registration.affine)
predict() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
predicted() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
prepare_arrays() (in module nipy.labs.statistical_mapping)
prepare_imports() (in module nipy.testing.nosetester)
prepare_test_args() (nipy.testing.nosetester.NipyNoseTester method)
prepareTestLoader() (nipy.testing.doctester.NipyDoctest method)
prevalence_density() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
print_() (in module nipy.algorithms.segmentation.vem)
print_extended_help() (in module nipy.utils.perlpie)
probability_under_prior() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
product() (in module nipy.core.reference.coordinate_map)
(in module nipy.core.reference.coordinate_system)
propagate_upward() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
propagate_upward_and() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
pth_from_pvals() (nipy.algorithms.statistics.empirical_pvalue.FDR method)
pvalue() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)

Q

Q() (in module nipy.algorithms.statistics.rft)
quasi() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)

R

R2() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
R2_adj() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
radsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
RandomEffects (class in nipy.algorithms.statistics.formula.formulae)
randthresh() (in module nipy.labs.utils.random_threshold)
randthresh_connex() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_gaussnull() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_gaussnull_connex() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_knownull() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_knownull_connex() (in module nipy.labs.utils.random_threshold)
randthresh_main() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_gaussnull() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_gaussnull_connex() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_knownull() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_knownull_connex() (in module nipy.labs.utils.random_threshold)
rank() (nipy.algorithms.statistics.models.glm.Model static method)
(nipy.algorithms.statistics.models.regression.ARModel static method)
(nipy.algorithms.statistics.models.regression.GLSModel static method)
(nipy.algorithms.statistics.models.regression.OLSModel static method)
(nipy.algorithms.statistics.models.regression.WLSModel static method)
ratsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
Realign4d (class in nipy.algorithms.registration.groupwise_registration)
realign4d() (in module nipy.algorithms.registration.groupwise_registration)
Realign4dAlgorithm (class in nipy.algorithms.registration.groupwise_registration)
recipr0() (in module nipy.algorithms.utils.matrices)
recompute_labels() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
reduce() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
reduce_coo_matrix() (in module nipy.labs.spatial_models.discrete_domain)
reduce_to_leaves() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
reference (nipy.core.image.xyz_image.XYZImage attribute)
reference() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
refine() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
RegressionOutput (class in nipy.modalities.fmri.fmristat.outputters)
RegressionOutputList (class in nipy.modalities.fmri.fmristat.outputters)
RegressionResults (class in nipy.algorithms.statistics.models.regression)
reml() (in module nipy.modalities.fmri.spm.reml)
remove_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
remove_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
remove_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
remove_trivial_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
removeO() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
renamed_axes() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
renamed_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_reference() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
reorder_from_leaves_to_roots() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
reordered_axes() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
reordered_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_reference() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
replace() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
replace_inside() (in module nipy.labs.viz_tools.cm)
representative_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
resample() (in module nipy.algorithms.registration.resample)
(in module nipy.algorithms.resample)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
resample4d() (in module nipy.algorithms.registration.groupwise_registration)
resample_full_data() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
resample_img2img() (in module nipy.algorithms.resample)
resample_regressor() (in module nipy.modalities.fmri.hemodynamic_models)
resampled_to_affine() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
resampled_to_img() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
resel2fwhm() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
ReselImage (class in nipy.algorithms.fwhm)
Resels (class in nipy.algorithms.fwhm)
resid() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
responsibilities() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
results_generator() (in module nipy.modalities.fmri.fmristat.model)
rewrite() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
right_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
Rigid (class in nipy.algorithms.registration.affine)
Rigid2D (class in nipy.algorithms.registration.affine)
ROI (class in nipy.core.image.roi)
roi_confidence() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
roi_ellipse_fn() (in module nipy.core.image.roi)
roi_from_array_sampling_coordmap() (in module nipy.core.image.roi)
roi_prevalence() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
roi_sphere_fn() (in module nipy.core.image.roi)
rollaxis() (in module nipy.core.image.image)
rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
rotation_mat2vec() (in module nipy.algorithms.registration.affine)
rotation_vec2mat() (in module nipy.algorithms.registration.affine)
round_numbers() (in module nipy.testing.doctester)
Roy (class in nipy.algorithms.statistics.rft)
run() (nipy.algorithms.segmentation.vem.VEM method)
run_jobdef() (in module nipy.interfaces.spm)
run_matlab() (in module nipy.interfaces.matlab)
run_matlab_script() (in module nipy.interfaces.matlab)

S

safe_dtype() (in module nipy.core.reference.coordinate_system)
sample() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.labs.group.displacement_field.displacement_field method)
(nipy.labs.group.displacement_field.gaussian_random_field method)
sample_all_blocks() (nipy.labs.group.displacement_field.displacement_field method)
sample_and_average() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sample_condition() (in module nipy.modalities.fmri.hemodynamic_models)
sample_indicator() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sample_log_conditional_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
save() (in module nipy.io.files)
(in module nipy.labs.datasets.converters)
(nipy.labs.glm.glm.glm method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
scale_space() (in module nipy.algorithms.statistics.rft)
scaling (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
scanner_coords() (in module nipy.algorithms.registration.groupwise_registration)
scanner_time() (nipy.algorithms.registration.groupwise_registration.Image4d method)
scans_for_fname() (in module nipy.interfaces.spm)
scans_for_fnames() (in module nipy.interfaces.spm)
score (nipy.testing.doctester.NipyDoctest attribute)
score() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
screen() (in module nipy.algorithms.diagnostics.screens)
SecondStage (class in nipy.modalities.fmri.spm.model)
select_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
select_roi() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
select_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
select_vmm_cv() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
separate() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
series() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
series_from_mask() (in module nipy.labs.mask)
set() (nipy.algorithms.clustering.gmm.GridDescriptor method)
set_constant_densities() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
set_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_euclidian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
set_field() (nipy.algorithms.graph.field.Field method)
set_fmin() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
set_gaussian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
set_individual_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_priors() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
set_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
set_template_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_test_context() (nipy.testing.doctester.NipyDoctest method)
set_transform() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
set_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
shape() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)
shape_generator() (in module nipy.core.utils.generators)
shifted_domain_origin() (in module nipy.core.reference.coordinate_map)
shifted_range_origin() (in module nipy.core.reference.coordinate_map)
show() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
show_components() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sigma2fwhm() (in module nipy.algorithms.kernel_smooth)
signal_to_pproba() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
Similarity (class in nipy.algorithms.registration.affine)
similarity (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
Similarity2D (class in nipy.algorithms.registration.affine)
SimilarityMeasure (class in nipy.algorithms.registration.similarity_measures)
simple_update() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
simplify() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
simulated_pvalue() (in module nipy.labs.statistical_mapping)
single_run_realign4d() (in module nipy.algorithms.registration.groupwise_registration)
skip_if_running_nose() (in module nipy.utils.skip_test)
slice_generator() (in module nipy.core.utils.generators)
slice_parcels() (in module nipy.core.utils.generators)
SliceMaker (class in nipy.core.image.image)
smatrix_from_3d_array() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_3d_idx() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_nd_array() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_nd_idx() (in module nipy.labs.spatial_models.discrete_domain)
smooth() (nipy.algorithms.kernel_smooth.LinearFilter method)
smoothed_histogram_from_samples() (in module nipy.algorithms.statistics.empirical_pvalue)
sort_key() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
sort_labels() (nipy.algorithms.segmentation.vem.VEM method)
sorted_values() (in module nipy.labs.group.permutation_test)
SpaceError (class in nipy.core.reference.spaces)
SpaceTypeError (class in nipy.core.reference.spaces)
spatial_coordmap (nipy.core.image.affine_image.AffineImage attribute)
spectral_decomposition() (in module nipy.modalities.fmri.fmristat.hrf)
sphere_density() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
spherical_search() (in module nipy.algorithms.statistics.rft)
split() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
split_group() (in module nipy.labs.utils.reproducibility_measures)
SPM
SPM approach
SPM software
spm_dispersion_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
spm_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
spm_path() (nipy.interfaces.spm.SpmInfo static method)
spm_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
SpmInfo (class in nipy.interfaces.spm)
square_gaussian_filter() (in module nipy.labs.group.displacement_field)
square_gaussian_filter1d() (in module nipy.labs.group.displacement_field)
SSE() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.RegressionResults static method)
SSR() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
SST() (nipy.algorithms.statistics.models.regression.RegressionResults static method)
stack2designs() (in module nipy.modalities.fmri.design)
stack_contrasts() (in module nipy.modalities.fmri.design)
stack_designs() (in module nipy.modalities.fmri.design)
stat() (nipy.labs.glm.glm.contrast method)
statistics_from_position() (in module nipy.labs.utils.reproducibility_measures)
step_function() (in module nipy.modalities.fmri.utils)
StepFunction (class in nipy.algorithms.statistics.models.utils)
stratify() (nipy.algorithms.statistics.formula.formulae.Factor method)
strides_from() (in module nipy.utils.arrays)
strip_array_repr() (in module nipy.testing.doctester)
StructuredDomain (class in nipy.labs.spatial_models.discrete_domain)
subdict() (in module nipy.algorithms.registration.optimizer)
subdomain_from_array() (in module nipy.labs.spatial_models.mroi)
subdomain_from_balls() (in module nipy.labs.spatial_models.mroi)
subdomain_from_image() (in module nipy.labs.spatial_models.mroi)
subdomain_from_position_and_image() (in module nipy.labs.spatial_models.mroi)
SubDomains (class in nipy.labs.spatial_models.mroi)
subfield() (nipy.algorithms.graph.field.Field method)
subforest() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
subgraph() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
subgraph_left() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
subgraph_right() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
subgrid_affine() (in module nipy.algorithms.registration.affine)
subs() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.Factor method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Formula method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects method)
(nipy.algorithms.statistics.formula.formulae.Term method)
subsample() (in module nipy.core.image.image)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
suiteClass (nipy.testing.doctester.NipyDoctest attribute)
summary() (nipy.labs.glm.glm.contrast method)
SupervisedLikelihoodRatio (class in nipy.algorithms.registration.similarity_measures)
surrogate_3d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
surrogate_4d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
synchronized_order() (in module nipy.core.image.image)

T

t() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
taylor_approx() (in module nipy.modalities.fmri.fmristat.hrf)
Tcontrast() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
TContrastResults (class in nipy.algorithms.statistics.models.model)
Term (class in nipy.algorithms.statistics.formula.formulae)
terms (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
terms() (in module nipy.algorithms.statistics.formula.formulae)
test() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.testing.nosetester.NipyNoseTester method)
test_anat_cache() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_coord_transform_trivial() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_demo_ortho_slicer() (in module nipy.labs.viz_tools.test.test_ortho_slicer)
test_demo_plot_map() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_dim_cmap() (in module nipy.labs.viz_tools.test.test_cm)
test_EC2() (in module nipy.algorithms.statistics.utils)
test_EC3() (in module nipy.algorithms.statistics.utils)
test_edge_detect() (in module nipy.labs.viz_tools.test.test_edge_detect)
test_fast_abs_percentile() (in module nipy.labs.viz_tools.test.test_edge_detect)
test_find_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_finder_class (nipy.testing.doctester.NipyDoctest attribute)
test_plot_anat() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_replace_inside() (in module nipy.labs.viz_tools.test.test_cm)
test_stat() (in module nipy.labs.utils.random_threshold)
three_classes_GMM_fit() (in module nipy.algorithms.statistics.empirical_pvalue)
threshold() (in module nipy.algorithms.registration.affine)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
threshold_bifurcations() (nipy.algorithms.graph.field.Field method)
threshold_connect_components() (in module nipy.labs.mask)
time_slice_diffs() (in module nipy.algorithms.diagnostics.timediff)
title() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
to_coo_matrix() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
to_image() (nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
to_matrix_vector() (in module nipy.core.transforms.affines)
(in module nipy.labs.datasets.transforms.affine_utils)
todiscrete() (nipy.core.image.roi.ContinuousROI method)
together() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
tol (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
(nipy.algorithms.statistics.models.family.links.CDFLink attribute)
(nipy.algorithms.statistics.models.family.links.CLogLog attribute)
(nipy.algorithms.statistics.models.family.links.Log attribute)
(nipy.algorithms.statistics.models.family.links.Logit attribute)
(nipy.algorithms.statistics.models.family.varfuncs.Binomial attribute)
tolist() (nipy.testing.doctester.NipyDoctest method)
topology() (nipy.labs.spatial_models.discrete_domain.MeshDomain method)
TOutput (class in nipy.modalities.fmri.fmristat.outputters)
train() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
Transform (class in nipy.algorithms.registration.transform)
(class in nipy.labs.datasets.transforms.transform)
translation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
transposed_values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
tree_depth() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
trigsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
trRV() (in module nipy.modalities.fmri.spm.trace)
TStat (class in nipy.algorithms.statistics.rft)
ttest() (in module nipy.labs.utils.reproducibility_measures)
twosample_stat() (in module nipy.labs.group.permutation_test)
twosample_test() (in module nipy.labs.statistical_mapping)

U

uncorrected_threshold() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
unweighted_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
unweighted_likelihood_() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_block() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_block_SA() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_displacements() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_displacements_SA() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_effects() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_labels() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_mean_effect() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_means() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_parameters_mcmc() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_parameters_saem() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_precisions() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_summary_statistics() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_weights() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
use_derivatives() (in module nipy.algorithms.registration.optimizer)

V

valid (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
values_in_world() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
variable (nipy.algorithms.statistics.rft.ECquasi attribute)
variance (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
VarianceFunction (class in nipy.algorithms.statistics.models.family.varfuncs)
VBGMM (class in nipy.algorithms.clustering.bgmm)
vcov() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
ve_step() (nipy.algorithms.segmentation.vem.VEM method)
VEM (class in nipy.algorithms.segmentation.vem)
vm_step() (nipy.algorithms.segmentation.vem.VEM method)
vm_step_gauss() (in module nipy.algorithms.segmentation.vem)
vm_step_laplace() (in module nipy.algorithms.segmentation.vem)
volume2ball() (in module nipy.algorithms.statistics.rft)
VolumeData (class in nipy.labs.datasets.volumes.volume_data)
VolumeField (class in nipy.labs.datasets.volumes.volume_field)
VolumeGrid (class in nipy.labs.datasets.volumes.volume_grid)
VolumeImg (class in nipy.labs.datasets.volumes.volume_img)
VonMisesMixture (class in nipy.algorithms.clustering.von_mises_fisher_mixture)
voronoi() (in module nipy.algorithms.clustering.clustering)
voronoi_diagram() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
voronoi_labelling() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
VoxBo
voxel
voxel_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
voxel_thresholded_ttest() (in module nipy.labs.utils.reproducibility_measures)

W

wantFile() (nipy.testing.doctester.NipyDoctest method)
ward() (in module nipy.algorithms.clustering.hierarchical_clustering)
(nipy.algorithms.graph.field.Field method)
ward_field_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_quick() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_quick_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
water activation PET
weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
weighted_feature_density() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
weighted_median() (in module nipy.algorithms.segmentation.vem)
WeightedForest (class in nipy.algorithms.clustering.hierarchical_clustering)
WeightedGraph (class in nipy.algorithms.graph.graph)
weights() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
wgraph_from_3d_grid() (in module nipy.algorithms.graph.graph)
wgraph_from_adjacency() (in module nipy.algorithms.graph.graph)
wgraph_from_coo_matrix() (in module nipy.algorithms.graph.graph)
whiten() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
wishart_eval() (in module nipy.algorithms.clustering.bgmm)
WLSModel (class in nipy.algorithms.statistics.models.regression)
world_space (nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_field.VolumeField attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
write_csv() (nipy.modalities.fmri.design_matrix.DesignMatrix method)
write_data() (in module nipy.core.utils.generators)
write_parcellation_images() (in module nipy.labs.spatial_models.parcel_io)
write_screen_res() (in module nipy.algorithms.diagnostics.screens)
write_to_csv() (nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)

X

xslice() (in module nipy.core.reference.slices)
xyz_affine() (in module nipy.core.image.image_spaces)
(in module nipy.core.reference.spaces)
xyz_order() (in module nipy.core.reference.spaces)
xyz_ordered() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
xyz_transform (nipy.core.image.xyz_image.XYZImage attribute)
XYZImage (class in nipy.core.image.xyz_image)
XYZTransform (class in nipy.core.image.xyz_image)

Y

yslice() (in module nipy.core.reference.slices)
yule_walker() (in module nipy.algorithms.statistics.models.regression)

Z

z_to_slice() (nipy.algorithms.registration.groupwise_registration.Image4d method)
zscore() (in module nipy.labs.utils.zscore)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
zslice() (in module nipy.core.reference.slices)