sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build02.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ python-cogent 1.5.1-2 (armhf) 09 May 2012 02:58 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: python-cogent Version: 1.5.1-2 Source Version: 1.5.1-2 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/python-cogent-AX1k2k/python-cogent-1.5.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/python-cogent-AX1k2k' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-619dd655-8178-4824-9b08-53b5ee8ad859' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'python-cogent' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/python-cogent/trunk/ Need to get 3065 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main python-cogent 1.5.1-2 (dsc) [1470 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main python-cogent 1.5.1-2 (tar) [3058 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main python-cogent 1.5.1-2 (diff) [5273 B] Fetched 3065 kB in 0s (9566 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-FrPAHN/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 8 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), python-all-dev (>= 2.6), python-support, python-numpy (>= 1.3.0), python-sphinx, cython Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), python-all-dev (>= 2.6), python-support, python-numpy (>= 1.3.0), python-sphinx, cython dpkg-deb: building package `sbuild-build-depends-python-cogent-dummy' in `/«BUILDDIR»/resolver-kN4mDx/apt_archive/sbuild-build-depends-python-cogent-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install python-cogent build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cython debhelper docutils-common file gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libdb4.8 libexpat1 libexpat1-dev libffi5 libgfortran3 libglib2.0-0 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3gf libmagic1 libpcre3 libpipeline1 libpython2.6 libpython2.7 libsqlite3-0 libssl-dev libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-all-dev python-dev python-docutils python-jinja2 python-markupsafe python-minimal python-numpy python-pygments python-roman python-sphinx python-support python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sgml-base sphinx-common xml-core zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended texlive-latex-base texlive-lang-french fonts-linuxlibertine ttf-linux-libertine python-jinja2-doc python-numpy-doc python-numpy-dbg python-nose gfortran ttf-bitstream-vera jsmath libjs-mathjax texlive-latex-extra texlive-fonts-recommended python2.6-doc binfmt-support python2.7-doc sgml-base-doc Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info javascript-common libssl-doc libmail-sendmail-perl python-imaging libpaper-utils python-lxml docutils-doc python-pkg-resources python-chardet sphinx-doc The following NEW packages will be installed: bsdmainutils cython debhelper docutils-common file gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libdb4.8 libexpat1 libexpat1-dev libffi5 libgfortran3 libglib2.0-0 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3gf libmagic1 libpcre3 libpipeline1 libpython2.6 libpython2.7 libsqlite3-0 libssl-dev libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-all-dev python-dev python-docutils python-jinja2 python-markupsafe python-minimal python-numpy python-pygments python-roman python-sphinx python-support python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-python-cogent-dummy sgml-base sphinx-common xml-core zlib1g-dev debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 59 newly installed, 0 to remove and 8 not upgraded. Need to get 0 B/67.3 MB of archives. After this operation, 147 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libssl1.0.0:armhf. Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1b-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libsqlite3-0:armhf. Unpacking libsqlite3-0:armhf (from .../libsqlite3-0_3.7.11-2_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... 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Unpacking libjs-jquery (from .../libjs-jquery_1.7.1-1_all.deb) ... Selecting previously unselected package libjs-underscore. Unpacking libjs-underscore (from .../libjs-underscore_1.1.6-1_all.deb) ... Selecting previously unselected package libjs-sphinxdoc. Unpacking libjs-sphinxdoc (from .../libjs-sphinxdoc_1.1.3+dfsg-3_all.deb) ... Selecting previously unselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_armhf.deb) ... Selecting previously unselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.7-4_armhf.deb) ... Selecting previously unselected package libpython2.7. Unpacking libpython2.7 (from .../libpython2.7_2.7.3~rc2-2.1_armhf.deb) ... Selecting previously unselected package zlib1g-dev:armhf. Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_armhf.deb) ... Selecting previously unselected package libssl-dev. Unpacking libssl-dev (from .../libssl-dev_1.0.1b-1_armhf.deb) ... Selecting previously unselected package python-all. Unpacking python-all (from .../python-all_2.7.2-10_all.deb) ... Selecting previously unselected package python2.7-dev. Unpacking python2.7-dev (from .../python2.7-dev_2.7.3~rc2-2.1_armhf.deb) ... Selecting previously unselected package python-dev. Unpacking python-dev (from .../python-dev_2.7.2-10_all.deb) ... Selecting previously unselected package python2.6-dev. Unpacking python2.6-dev (from .../python2.6-dev_2.6.7-4_armhf.deb) ... Selecting previously unselected package python-all-dev. Unpacking python-all-dev (from .../python-all-dev_2.7.2-10_all.deb) ... Selecting previously unselected package python-roman. Unpacking python-roman (from .../python-roman_0.8.1-6_all.deb) ... Selecting previously unselected package python-docutils. Unpacking python-docutils (from .../python-docutils_0.8.1-6_all.deb) ... Selecting previously unselected package python-markupsafe. Unpacking python-markupsafe (from .../python-markupsafe_0.15-1_armhf.deb) ... Selecting previously unselected package python-jinja2. Unpacking python-jinja2 (from .../python-jinja2_2.6-1_armhf.deb) ... Selecting previously unselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.6.1-8_armhf.deb) ... Selecting previously unselected package python-pygments. Unpacking python-pygments (from .../python-pygments_1.5+dfsg-1_all.deb) ... Selecting previously unselected package sphinx-common. Unpacking sphinx-common (from .../sphinx-common_1.1.3+dfsg-3_all.deb) ... Selecting previously unselected package python-sphinx. Unpacking python-sphinx (from .../python-sphinx_1.1.3+dfsg-3_all.deb) ... Selecting previously unselected package sbuild-build-depends-python-cogent-dummy. Unpacking sbuild-build-depends-python-cogent-dummy (from .../sbuild-build-depends-python-cogent-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libssl1.0.0:armhf (1.0.1b-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libsqlite3-0:armhf (3.7.11-2) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libgfortran3:armhf (4.7.0-1.1+rpi) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libdb4.8:armhf (4.8.30-11) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7-minimal (2.7.3~rc2-2.1) ... Setting up python2.7 (2.7.3~rc2-2.1) ... Setting up python-minimal (2.7.2-10) ... Setting up python (2.7.2-10) ... Setting up python-support (1.0.14) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up python2.6 (2.6.7-4) ... Setting up cython (0.15.1-2) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up sgml-base (1.26+nmu1) ... Setting up xml-core (0.13) ... Setting up docutils-common (0.8.1-6) ... Setting up libblas3gf (1.2.20110419-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up libexpat1-dev (2.1.0-1) ... Setting up libjs-jquery (1.7.1-1) ... Setting up libjs-underscore (1.1.6-1) ... Setting up libjs-sphinxdoc (1.1.3+dfsg-3) ... Setting up liblapack3gf (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libpython2.6 (2.6.7-4) ... Setting up libpython2.7 (2.7.3~rc2-2.1) ... Setting up zlib1g-dev:armhf (1:1.2.6.dfsg-2) ... Setting up libssl-dev (1.0.1b-1) ... Setting up python-all (2.7.2-10) ... Setting up python2.7-dev (2.7.3~rc2-2.1) ... Setting up python-dev (2.7.2-10) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-all-dev (2.7.2-10) ... Setting up python-roman (0.8.1-6) ... Setting up python-docutils (0.8.1-6) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode. Setting up python-markupsafe (0.15-1) ... Setting up python-jinja2 (2.6-1) ... Setting up python-numpy (1:1.6.1-8) ... Setting up python-pygments (1.5+dfsg-1) ... Setting up sphinx-common (1.1.3+dfsg-3) ... Setting up python-sphinx (1.1.3+dfsg-3) ... Setting up sbuild-build-depends-python-cogent-dummy (0.invalid.0) ... Processing triggers for python-support ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 cython_0.15.1-2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 docutils-common_0.8.1-6 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb4.8_4.8.30-11 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libexpat1-dev_2.1.0-1 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libgfortran3_4.7.0-1.1+rpi libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi libjs-jquery_1.7.1-1 libjs-sphinxdoc_1.1.3+dfsg-3 libjs-underscore_1.1.6-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libpython2.6_2.6.7-4 libpython2.7_2.7.3~rc2-2.1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libsqlite3-0_3.7.11-2 libss2_1.42.2-2 libssl-dev_1.0.1b-1 libssl1.0.0_1.0.1b-1 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 python_2.7.2-10 python-all_2.7.2-10 python-all-dev_2.7.2-10 python-dev_2.7.2-10 python-docutils_0.8.1-6 python-jinja2_2.6-1 python-markupsafe_0.15-1 python-minimal_2.7.2-10 python-numpy_1:1.6.1-8 python-pygments_1.5+dfsg-1 python-roman_0.8.1-6 python-sphinx_1.1.3+dfsg-3 python-support_1.0.14 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 python2.7_2.7.3~rc2-2.1 python2.7-dev_2.7.3~rc2-2.1 python2.7-minimal_2.7.3~rc2-2.1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cogent-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 sphinx-common_1.1.3+dfsg-3 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xml-core_0.13 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Sep 4 09:55:07 2011 UTC using DSA key ID BE9D5339 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./python-cogent_1.5.1-2.dsc dpkg-source: info: extracting python-cogent in python-cogent-1.5.1 dpkg-source: info: unpacking python-cogent_1.5.1.orig.tar.gz dpkg-source: info: unpacking python-cogent_1.5.1-2.debian.tar.gz dpkg-source: info: applying fix_python_shebang_line.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-619dd655-8178-4824-9b08-53b5ee8ad859 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package python-cogent dpkg-buildpackage: source version 1.5.1-2 dpkg-source --before-build python-cogent-1.5.1 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean --with python2 dh_testdir dh_auto_clean running clean 'build/lib.linux-armv7l-2.6' does not exist -- can't clean it 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.6' does not exist -- can't clean it running clean 'build/lib.linux-armv7l-2.7' does not exist -- can't clean it 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it debian/rules override_dh_clean make[1]: Entering directory `/«PKGBUILDDIR»' rm -rf build build-stamp rm -rf doc/_build dh_clean make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --with python2 dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' cd doc; /usr/bin/make html make[2]: Entering directory `/«PKGBUILDDIR»/doc' sphinx-build -b html -d _build/doctrees . _build/html Making output directory... Running Sphinx v1.1.3 loading pickled environment... not yet created building [html]: targets for 97 source files that are out of date updating environment: 97 added, 0 changed, 0 removed reading sources... [ 1%] COGENT_LICENSE reading sources... [ 2%] ChangeLog reading sources... [ 3%] README reading sources... [ 4%] coding_guidelines reading sources... [ 5%] cookbook/DNA_and_RNA_sequences reading sources... [ 6%] cookbook/accessing_databases reading sources... [ 7%] cookbook/alignments reading sources... [ 8%] cookbook/alphabet reading sources... [ 9%] cookbook/analysis_of_sequence_composition reading sources... [ 10%] cookbook/annotations reading sources... [ 11%] cookbook/blast reading sources... [ 12%] cookbook/building_alignments reading sources... [ 13%] cookbook/building_phylogenies reading sources... [ 14%] cookbook/checkpointing_long_running reading sources... [ 15%] cookbook/code_development reading sources... [ 16%] cookbook/community_analysis reading sources... [ 17%] cookbook/controlling_third_party_applications reading sources... [ 18%] cookbook/dealing_with_hts_data reading sources... [ 19%] cookbook/ensembl reading sources... [ 20%] cookbook/genetic_code reading sources... [ 21%] cookbook/hpc_environments reading sources... [ 22%] cookbook/index reading sources... [ 23%] cookbook/introduction reading sources... [ 24%] cookbook/loading_sequences reading sources... [ 25%] cookbook/managing_trees reading sources... [ 26%] cookbook/manipulating_biological_data reading sources... [ 27%] cookbook/moltypesequence reading sources... [ 28%] cookbook/multivariate_data_analysis reading sources... [ 29%] cookbook/parallel_tasks reading sources... [ 30%] cookbook/phylonodes reading sources... [ 31%] cookbook/protein_sequences reading sources... [ 32%] cookbook/sequence_similarity_search reading sources... [ 34%] cookbook/sequence_simulation reading sources... [ 35%] cookbook/simple_trees reading sources... 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[ 53%] examples/calculate_pairwise_distances reading sources... [ 54%] examples/codon_models reading sources... [ 55%] examples/coevolution reading sources... [ 56%] examples/complete_seq_features reading sources... [ 57%] examples/draw_dendrogram reading sources... [ 58%] examples/draw_dotplot reading sources... [ 59%] examples/empirical_protein_models reading sources... [ 60%] examples/entity_selection reading sources... [ 61%] examples/estimate_startingpoint reading sources... [ 62%] examples/generating_app_commandlines reading sources... [ 63%] examples/genetic_code_aa_index reading sources... [ 64%] examples/goodness_of_fit reading sources... [ 65%] examples/handling_3dstructures reading sources... [ 67%] examples/handling_tabular_data reading sources... [ 68%] examples/hmm_par_heterogeneity reading sources... [ 69%] examples/index reading sources... [ 70%] examples/maketree_from_proteinseqs reading sources... [ 71%] examples/manipulating_tree_nodes reading sources... [ 72%] examples/motif_results reading sources... [ 73%] examples/neutral_test reading sources... [ 74%] examples/parametric_bootstrap reading sources... [ 75%] examples/perform_PCoA_analysis reading sources... [ 76%] examples/perform_nmds reading sources... [ 77%] examples/period_estimation reading sources... [ 78%] examples/phylo_by_ls reading sources... [ 79%] examples/phylogeny_app_controllers reading sources... [ 80%] examples/query_ensembl reading sources... [ 81%] examples/query_ncbi reading sources... [ 82%] examples/rate_heterogeneity reading sources... [ 83%] examples/relative_rate reading sources... [ 84%] examples/reuse_results reading sources... [ 85%] examples/reverse_complement reading sources... [ 86%] examples/scope_model_params_on_trees reading sources... [ 87%] examples/seq_features reading sources... [ 88%] examples/seqsim_alignment_simulation reading sources... [ 89%] examples/seqsim_aln_sim_user_alphabet reading sources... [ 90%] examples/seqsim_tree_sim reading sources... [ 91%] examples/simple reading sources... [ 92%] examples/simulate_alignment reading sources... [ 93%] examples/testing_multi_loci reading sources... [ 94%] examples/translate_dna reading sources... [ 95%] examples/unifrac reading sources... [ 96%] examples/unrestricted_nucleotide reading sources... [ 97%] index reading sources... [ 98%] install reading sources... [100%] licenses looking for now-outdated files... none found pickling environment... done /«PKGBUILDDIR»/doc/cookbook/ensembl.rst:: WARNING: document isn't included in any toctree checking consistency... done preparing documents... done writing output... [ 1%] COGENT_LICENSE writing output... [ 2%] ChangeLog writing output... [ 3%] README writing output... [ 4%] coding_guidelines writing output... [ 5%] cookbook/DNA_and_RNA_sequences writing output... [ 6%] cookbook/accessing_databases writing output... [ 7%] cookbook/alignments writing output... [ 8%] cookbook/alphabet writing output... [ 9%] cookbook/analysis_of_sequence_composition writing output... [ 10%] cookbook/annotations writing output... [ 11%] cookbook/blast writing output... [ 12%] cookbook/building_alignments writing output... [ 13%] cookbook/building_phylogenies writing output... [ 14%] cookbook/checkpointing_long_running writing output... [ 15%] cookbook/code_development writing output... [ 16%] cookbook/community_analysis writing output... [ 17%] cookbook/controlling_third_party_applications writing output... [ 18%] cookbook/dealing_with_hts_data writing output... [ 19%] cookbook/ensembl writing output... [ 20%] cookbook/genetic_code writing output... [ 21%] cookbook/hpc_environments writing output... [ 22%] cookbook/index writing output... [ 23%] cookbook/introduction writing output... [ 24%] cookbook/loading_sequences writing output... [ 25%] cookbook/managing_trees writing output... [ 26%] cookbook/manipulating_biological_data writing output... [ 27%] cookbook/moltypesequence writing output... [ 28%] cookbook/multivariate_data_analysis writing output... [ 29%] cookbook/parallel_tasks writing output... [ 30%] cookbook/phylonodes writing output... [ 31%] cookbook/protein_sequences writing output... [ 32%] cookbook/sequence_similarity_search writing output... [ 34%] cookbook/sequence_simulation writing output... [ 35%] cookbook/simple_trees writing output... [ 36%] cookbook/standard_statistical_analyses writing output... [ 37%] cookbook/structural_contacts writing output... [ 38%] cookbook/structural_data writing output... [ 39%] cookbook/structural_data_2 writing output... [ 40%] cookbook/tables writing output... [ 41%] cookbook/tips_for_using_python writing output... [ 42%] cookbook/useful_utilities writing output... [ 43%] cookbook/using_likelihood_to_perform_evolutionary_analyses writing output... [ 44%] data_file_links writing output... [ 45%] developer_notes writing output... [ 46%] examples/align_codons_to_protein writing output... [ 47%] examples/alignment_app_controllers writing output... [ 48%] examples/aln_profile writing output... [ 49%] examples/application_controller_framework writing output... [ 50%] examples/building_and_using_an_application_controller writing output... [ 51%] examples/calculate_UPGMA_cluster writing output... [ 52%] examples/calculate_neigbourjoining_tree writing output... [ 53%] examples/calculate_pairwise_distances writing output... [ 54%] examples/codon_models writing output... [ 55%] examples/coevolution writing output... [ 56%] examples/complete_seq_features writing output... [ 57%] examples/draw_dendrogram writing output... [ 58%] examples/draw_dotplot writing output... [ 59%] examples/empirical_protein_models writing output... [ 60%] examples/entity_selection writing output... [ 61%] examples/estimate_startingpoint writing output... [ 62%] examples/generating_app_commandlines writing output... [ 63%] examples/genetic_code_aa_index writing output... [ 64%] examples/goodness_of_fit writing output... [ 65%] examples/handling_3dstructures writing output... [ 67%] examples/handling_tabular_data writing output... [ 68%] examples/hmm_par_heterogeneity writing output... [ 69%] examples/index writing output... [ 70%] examples/maketree_from_proteinseqs writing output... [ 71%] examples/manipulating_tree_nodes writing output... [ 72%] examples/motif_results writing output... [ 73%] examples/neutral_test writing output... [ 74%] examples/parametric_bootstrap writing output... [ 75%] examples/perform_PCoA_analysis writing output... [ 76%] examples/perform_nmds writing output... [ 77%] examples/period_estimation writing output... [ 78%] examples/phylo_by_ls writing output... [ 79%] examples/phylogeny_app_controllers writing output... [ 80%] examples/query_ensembl writing output... [ 81%] examples/query_ncbi writing output... [ 82%] examples/rate_heterogeneity writing output... [ 83%] examples/relative_rate WARNING: LaTeX command 'latex' cannot be run (needed for math display), check the pngmath_latex setting writing output... [ 84%] examples/reuse_results writing output... [ 85%] examples/reverse_complement writing output... [ 86%] examples/scope_model_params_on_trees writing output... [ 87%] examples/seq_features writing output... [ 88%] examples/seqsim_alignment_simulation writing output... [ 89%] examples/seqsim_aln_sim_user_alphabet writing output... [ 90%] examples/seqsim_tree_sim writing output... [ 91%] examples/simple writing output... [ 92%] examples/simulate_alignment writing output... [ 93%] examples/testing_multi_loci writing output... [ 94%] examples/translate_dna writing output... [ 95%] examples/unifrac writing output... [ 96%] examples/unrestricted_nucleotide writing output... [ 97%] index writing output... [ 98%] install writing output... [100%] licenses writing additional files... genindex search copying downloadable files... [ 6%] /«PKGBUILDDIR»/doc/data/primate_cdx2_promoter.fasta copying downloadable files... [ 13%] /«PKGBUILDDIR»/doc/data/primate_brca1.tree copying downloadable files... [ 20%] /«PKGBUILDDIR»/doc/data/motif_example_meme_results.txt copying downloadable files... [ 26%] /«PKGBUILDDIR»/doc/data/4TSV.pdb copying downloadable files... [ 33%] /«PKGBUILDDIR»/doc/data/test2.fasta copying downloadable files... [ 40%] /«PKGBUILDDIR»/doc/data/primate_brca1.fasta copying downloadable files... [ 46%] /«PKGBUILDDIR»/doc/data/test.paml copying downloadable files... [ 53%] /«PKGBUILDDIR»/doc/data/dists_for_phylo.pickle copying downloadable files... [ 60%] /«PKGBUILDDIR»/doc/data/long_testseqs.fasta copying downloadable files... [ 66%] /«PKGBUILDDIR»/doc/data/motif_example.fasta copying downloadable files... [ 73%] /«PKGBUILDDIR»/doc/../cogent-requirements.txt copying downloadable files... [ 80%] /«PKGBUILDDIR»/doc/data/abglobin_aa.phylip copying downloadable files... [ 86%] /«PKGBUILDDIR»/doc/cookbook/../data/long_testseqs.fasta copying downloadable files... [ 93%] /«PKGBUILDDIR»/doc/data/test.tree copying downloadable files... [100%] /«PKGBUILDDIR»/doc/data/trna_profile.fasta copying static files... done dumping search index... done dumping object inventory... done build succeeded, 2 warnings. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory `/«PKGBUILDDIR»/doc' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a running install running build running build_py creating build creating build/lib.linux-armv7l-2.6 creating build/lib.linux-armv7l-2.6/cogent copying cogent/__init__.py -> build/lib.linux-armv7l-2.6/cogent creating build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/traceback.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/algorithm.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/dp_calculation.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/__init__.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/pycompare.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/indel_model.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/indel_positions.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/partial_order_graph.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/progressive.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/align.py -> build/lib.linux-armv7l-2.6/cogent/align copying cogent/align/pairwise.py -> build/lib.linux-armv7l-2.6/cogent/align creating build/lib.linux-armv7l-2.6/cogent/align/weights copying cogent/align/weights/__init__.py -> build/lib.linux-armv7l-2.6/cogent/align/weights copying cogent/align/weights/util.py -> build/lib.linux-armv7l-2.6/cogent/align/weights copying cogent/align/weights/methods.py -> build/lib.linux-armv7l-2.6/cogent/align/weights creating build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/dotur.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/formatdb.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/raxml.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/parameters.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/gctmpca.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/foldalign.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/fasttree.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/__init__.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/dynalign.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/clearcut.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/uclust.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/muscle.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/consan.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/mafft.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/util.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/cd_hit.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/pknotsrg.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/sfffile.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/contrafold.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/rdp_classifier.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/cove.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/rnashapes.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/comrna.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/unafold.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/sfold.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/stride.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/ilm.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/mfold.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/sffinfo.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/clustalw.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/knetfold.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/pfold.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/infernal.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/cmfinder.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/rnaforester.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/msms.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/dialign.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/carnac.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/rnaview.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/vienna_package.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/mothur.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/rdp_classifier20.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/fasttree_v1.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/nupack.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/blast.py -> build/lib.linux-armv7l-2.6/cogent/app copying cogent/app/rnaalifold.py -> build/lib.linux-armv7l-2.6/cogent/app creating build/lib.linux-armv7l-2.6/cogent/cluster copying cogent/cluster/__init__.py -> build/lib.linux-armv7l-2.6/cogent/cluster copying cogent/cluster/approximate_mds.py -> build/lib.linux-armv7l-2.6/cogent/cluster copying cogent/cluster/goodness_of_fit.py -> build/lib.linux-armv7l-2.6/cogent/cluster copying cogent/cluster/procrustes.py -> build/lib.linux-armv7l-2.6/cogent/cluster copying cogent/cluster/nmds.py -> build/lib.linux-armv7l-2.6/cogent/cluster copying cogent/cluster/metric_scaling.py -> build/lib.linux-armv7l-2.6/cogent/cluster copying cogent/cluster/UPGMA.py -> build/lib.linux-armv7l-2.6/cogent/cluster creating build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/sequence.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/__init__.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/moltype.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/alphabet.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/bitvector.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/annotation.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/profile.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/tree.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/location.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/info.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/entity.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/usage.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/alignment.py -> build/lib.linux-armv7l-2.6/cogent/core copying cogent/core/genetic_code.py -> build/lib.linux-armv7l-2.6/cogent/core creating build/lib.linux-armv7l-2.6/cogent/data copying cogent/data/__init__.py -> build/lib.linux-armv7l-2.6/cogent/data copying cogent/data/protein_properties.py -> build/lib.linux-armv7l-2.6/cogent/data copying cogent/data/energy_params.py -> build/lib.linux-armv7l-2.6/cogent/data copying cogent/data/molecular_weight.py -> build/lib.linux-armv7l-2.6/cogent/data copying cogent/data/ligand_properties.py -> build/lib.linux-armv7l-2.6/cogent/data copying cogent/data/nucleic_properties.py -> build/lib.linux-armv7l-2.6/cogent/data creating build/lib.linux-armv7l-2.6/cogent/db copying cogent/db/__init__.py -> build/lib.linux-armv7l-2.6/cogent/db copying cogent/db/util.py -> build/lib.linux-armv7l-2.6/cogent/db copying cogent/db/ncbi.py -> build/lib.linux-armv7l-2.6/cogent/db copying cogent/db/pdb.py -> build/lib.linux-armv7l-2.6/cogent/db copying cogent/db/rfam.py -> build/lib.linux-armv7l-2.6/cogent/db creating build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/region.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/feature_level.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/database.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/sequence.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/__init__.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/name.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/util.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/compara.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/assembly.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/host.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/related_region.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/species.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl copying cogent/db/ensembl/genome.py -> build/lib.linux-armv7l-2.6/cogent/db/ensembl creating build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/arrow_rates.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/__init__.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/compatibility.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/util.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/dotplot.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/legend.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/dendrogram.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/codon_usage.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/fancy_arrow.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/multivariate_plot.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/rlg2mpl.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/linear.py -> build/lib.linux-armv7l-2.6/cogent/draw copying cogent/draw/dinuc.py -> build/lib.linux-armv7l-2.6/cogent/draw creating build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/likelihood_calculation.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/bootstrap.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/predicate.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/__init__.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/substitution_model.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/solved_models.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/likelihood_function.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/pairwise_distance.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/substitution_calculation.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/parameter_controller.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/simulate.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/coevolution.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/likelihood_tree.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/best_likelihood.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/models.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/motif_prob_model.py -> build/lib.linux-armv7l-2.6/cogent/evolve copying cogent/evolve/discrete_markov.py -> build/lib.linux-armv7l-2.6/cogent/evolve creating build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/text_tree.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/rna_struct.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/__init__.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/phylip.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/pdb_color.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/xyzrn.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/fasta.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/pdb.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/structure.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/mage.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/stockholm.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/clustal.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/table.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/nexus.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/motif.py -> build/lib.linux-armv7l-2.6/cogent/format copying cogent/format/alignment.py -> build/lib.linux-armv7l-2.6/cogent/format creating build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/fit_function.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/svd.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/__init__.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/solve.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/period.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/optimisers.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/simannealingoptimiser.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/distance_transform.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/matrix_logarithm.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/function_optimisation.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/matrix_exponentiation.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/geometry.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/markov.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/scipy_optimize.py -> build/lib.linux-armv7l-2.6/cogent/maths copying cogent/maths/scipy_optimisers.py -> build/lib.linux-armv7l-2.6/cogent/maths creating build/lib.linux-armv7l-2.6/cogent/maths/matrix copying cogent/maths/matrix/__init__.py -> build/lib.linux-armv7l-2.6/cogent/maths/matrix copying cogent/maths/matrix/distance.py -> build/lib.linux-armv7l-2.6/cogent/maths/matrix creating build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/special.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/jackknife.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/test.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/__init__.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/information_criteria.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/period.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/util.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/kendall.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/ks.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/alpha_diversity.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/rarefaction.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/distribution.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats copying cogent/maths/stats/histogram.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats creating build/lib.linux-armv7l-2.6/cogent/maths/stats/cai copying cogent/maths/stats/cai/__init__.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats/cai copying cogent/maths/stats/cai/util.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats/cai copying cogent/maths/stats/cai/get_by_cai.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats/cai copying cogent/maths/stats/cai/adaptor.py -> build/lib.linux-armv7l-2.6/cogent/maths/stats/cai creating build/lib.linux-armv7l-2.6/cogent/maths/unifrac copying cogent/maths/unifrac/__init__.py -> build/lib.linux-armv7l-2.6/cogent/maths/unifrac copying cogent/maths/unifrac/fast_unifrac.py -> build/lib.linux-armv7l-2.6/cogent/maths/unifrac copying cogent/maths/unifrac/fast_tree.py -> build/lib.linux-armv7l-2.6/cogent/maths/unifrac creating build/lib.linux-armv7l-2.6/cogent/maths/spatial copying cogent/maths/spatial/__init__.py -> build/lib.linux-armv7l-2.6/cogent/maths/spatial creating build/lib.linux-armv7l-2.6/cogent/motif copying cogent/motif/__init__.py -> build/lib.linux-armv7l-2.6/cogent/motif copying cogent/motif/util.py -> build/lib.linux-armv7l-2.6/cogent/motif copying cogent/motif/k_word.py -> build/lib.linux-armv7l-2.6/cogent/motif creating build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/dotur.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/psl.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/foldalign.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/column.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rna_fold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/sequence.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/__init__.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/dynalign.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/macsim.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/gff.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/phylip.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/meme.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/consan.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/pknotsrg.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/locuslink.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/contrafold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/cove.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rnashapes.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/comrna.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/unafold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/sfold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/stride.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/ilm.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/bowtie.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/kegg_pos.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/fasta.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/ct.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/tinyseq.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/pdb.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/flowgram_collection.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/illumina_sequence.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/mfold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/tree.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/gbseq.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/structure.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/cut.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/knetfold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rna_plot.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/unigene.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/flowgram_parser.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/mage.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/blast_xml.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/pfold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/genbank.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/tree_xml.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/record.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/fastq.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/bpseq.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/sprinzl.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rfam.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/stockholm.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/gibbs.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/clustal.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/newick.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/record_finder.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/table.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rdb.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/kegg_fasta.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/infernal.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/cmfinder.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rnaforester.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/binary_sff.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/msms.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/dialign.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/aaindex.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/agilent_microarray.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/nexus.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/carnac.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/kegg_ko.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/paml.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rnaview.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/flowgram.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/ebi.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/mothur.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/greengenes.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/cigar.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/ncbi_taxonomy.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/nupack.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/blast.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/kegg_taxonomy.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/paml_matrix.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/rnaalifold.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/gcg.py -> build/lib.linux-armv7l-2.6/cogent/parse copying cogent/parse/cutg.py -> build/lib.linux-armv7l-2.6/cogent/parse creating build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/least_squares.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/tree_collection.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/tree_space.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/__init__.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/util.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/maximum_likelihood.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/nj.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/distance.py -> build/lib.linux-armv7l-2.6/cogent/phylo copying cogent/phylo/consensus.py -> build/lib.linux-armv7l-2.6/cogent/phylo creating build/lib.linux-armv7l-2.6/cogent/recalculation copying cogent/recalculation/scope.py -> build/lib.linux-armv7l-2.6/cogent/recalculation copying cogent/recalculation/__init__.py -> build/lib.linux-armv7l-2.6/cogent/recalculation copying cogent/recalculation/definition.py -> build/lib.linux-armv7l-2.6/cogent/recalculation copying cogent/recalculation/calculation.py -> build/lib.linux-armv7l-2.6/cogent/recalculation copying cogent/recalculation/setting.py -> build/lib.linux-armv7l-2.6/cogent/recalculation creating build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/sequence_generators.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/__init__.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/birth_death.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/analysis.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/tree.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/randomization.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/microarray.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/searchpath.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/markov.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/microarray_normalize.py -> build/lib.linux-armv7l-2.6/cogent/seqsim copying cogent/seqsim/usage.py -> build/lib.linux-armv7l-2.6/cogent/seqsim creating build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/rna2d.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/knots.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/__init__.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/contact.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/selection.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/annotation.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/asa.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/manipulation.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/dihedral.py -> build/lib.linux-armv7l-2.6/cogent/struct copying cogent/struct/pairs_util.py -> build/lib.linux-armv7l-2.6/cogent/struct creating build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/organizer.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/datatypes.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/option_parsing.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/transform.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/__init__.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/warning.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/dict_array.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/recode_alignment.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/terminal.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/parallel.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/update_version.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/checkpointing.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/misc.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/modules.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/dict2d.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/trie.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/table.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/unit_test.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/progress_display.py -> build/lib.linux-armv7l-2.6/cogent/util copying cogent/util/array.py -> build/lib.linux-armv7l-2.6/cogent/util running build_ext cythoning cogent/align/_compare.pyx to cogent/align/_compare.c building 'cogent.align._compare' extension creating build/temp.linux-armv7l-2.6 creating build/temp.linux-armv7l-2.6/cogent creating build/temp.linux-armv7l-2.6/cogent/align gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/align/_compare.c -o build/temp.linux-armv7l-2.6/cogent/align/_compare.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/align/_compare.o -o build/lib.linux-armv7l-2.6/cogent/align/_compare.so cythoning cogent/align/_pairwise_seqs.pyx to cogent/align/_pairwise_seqs.c building 'cogent.align._pairwise_seqs' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/align/_pairwise_seqs.c -o build/temp.linux-armv7l-2.6/cogent/align/_pairwise_seqs.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/align/_pairwise_seqs.o -o build/lib.linux-armv7l-2.6/cogent/align/_pairwise_seqs.so cythoning cogent/align/_pairwise_pogs.pyx to cogent/align/_pairwise_pogs.c building 'cogent.align._pairwise_pogs' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/align/_pairwise_pogs.c -o build/temp.linux-armv7l-2.6/cogent/align/_pairwise_pogs.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/align/_pairwise_pogs.o -o build/lib.linux-armv7l-2.6/cogent/align/_pairwise_pogs.so skipping 'cogent/evolve/_solved_models.c' Cython extension (up-to-date) building 'cogent.evolve._solved_models' extension creating build/temp.linux-armv7l-2.6/cogent/evolve gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/evolve/_solved_models.c -o build/temp.linux-armv7l-2.6/cogent/evolve/_solved_models.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/evolve/_solved_models.o -o build/lib.linux-armv7l-2.6/cogent/evolve/_solved_models.so cythoning cogent/evolve/_likelihood_tree.pyx to cogent/evolve/_likelihood_tree.c building 'cogent.evolve._likelihood_tree' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/evolve/_likelihood_tree.c -o build/temp.linux-armv7l-2.6/cogent/evolve/_likelihood_tree.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/evolve/_likelihood_tree.o -o build/lib.linux-armv7l-2.6/cogent/evolve/_likelihood_tree.so cythoning cogent/evolve/_pairwise_distance.pyx to cogent/evolve/_pairwise_distance.c building 'cogent.evolve._pairwise_distance' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/evolve/_pairwise_distance.c -o build/temp.linux-armv7l-2.6/cogent/evolve/_pairwise_distance.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/evolve/_pairwise_distance.o -o build/lib.linux-armv7l-2.6/cogent/evolve/_pairwise_distance.so cythoning cogent/struct/_asa.pyx to cogent/struct/_asa.c warning: cogent/struct/_asa.pyx:6:0: 'stdlib' is deprecated, use 'libc.stdlib' building 'cogent.struct._asa' extension creating build/temp.linux-armv7l-2.6/cogent/struct gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/struct/_asa.c -o build/temp.linux-armv7l-2.6/cogent/struct/_asa.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/struct/_asa.o -o build/lib.linux-armv7l-2.6/cogent/struct/_asa.so cythoning cogent/struct/_contact.pyx to cogent/struct/_contact.c warning: cogent/struct/_contact.pyx:6:0: 'stdlib' is deprecated, use 'libc.stdlib' building 'cogent.struct._contact' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/struct/_contact.c -o build/temp.linux-armv7l-2.6/cogent/struct/_contact.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/struct/_contact.o -o build/lib.linux-armv7l-2.6/cogent/struct/_contact.so skipping 'cogent/maths/_period.c' Cython extension (up-to-date) building 'cogent.maths._period' extension creating build/temp.linux-armv7l-2.6/cogent/maths gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/maths/_period.c -o build/temp.linux-armv7l-2.6/cogent/maths/_period.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/maths/_period.o -o build/lib.linux-armv7l-2.6/cogent/maths/_period.so cythoning cogent/maths/spatial/ckd3.pyx to cogent/maths/spatial/ckd3.c warning: cogent/maths/spatial/ckd3.pyx:14:0: 'stdlib' is deprecated, use 'libc.stdlib' building 'cogent.maths.spatial.ckd3' extension creating build/temp.linux-armv7l-2.6/cogent/maths/spatial gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c cogent/maths/spatial/ckd3.c -o build/temp.linux-armv7l-2.6/cogent/maths/spatial/ckd3.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-2.6/cogent/maths/spatial/ckd3.o -o build/lib.linux-armv7l-2.6/cogent/maths/spatial/ckd3.so running install_lib creating /«PKGBUILDDIR»/debian/tmp creating /«PKGBUILDDIR»/debian/tmp/usr creating /«PKGBUILDDIR»/debian/tmp/usr/lib creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/traceback.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/algorithm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/dp_calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/_pairwise_seqs.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/pycompare.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/indel_model.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/indel_positions.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/_compare.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/_pairwise_pogs.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/partial_order_graph.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/progressive.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/align.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align copying build/lib.linux-armv7l-2.6/cogent/align/pairwise.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.6/cogent/align/weights/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.6/cogent/align/weights/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.6/cogent/align/weights/methods.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.6/cogent/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/_period.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/fit_function.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/svd.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/solve.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/period.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.6/cogent/maths/unifrac/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.6/cogent/maths/unifrac/fast_unifrac.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.6/cogent/maths/unifrac/fast_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.6/cogent/maths/optimisers.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/simannealingoptimiser.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/distance_transform.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/matrix_logarithm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/matrix copying build/lib.linux-armv7l-2.6/cogent/maths/matrix/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/matrix copying build/lib.linux-armv7l-2.6/cogent/maths/matrix/distance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/matrix copying build/lib.linux-armv7l-2.6/cogent/maths/function_optimisation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/matrix_exponentiation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/geometry.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/special.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.6/cogent/maths/stats/cai/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.6/cogent/maths/stats/cai/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.6/cogent/maths/stats/cai/get_by_cai.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.6/cogent/maths/stats/cai/adaptor.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.6/cogent/maths/stats/jackknife.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/test.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/information_criteria.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/period.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/kendall.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/ks.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/distribution.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.6/cogent/maths/stats/histogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/stats creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/spatial copying build/lib.linux-armv7l-2.6/cogent/maths/spatial/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/spatial copying build/lib.linux-armv7l-2.6/cogent/maths/spatial/ckd3.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths/spatial copying build/lib.linux-armv7l-2.6/cogent/maths/markov.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/scipy_optimize.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.6/cogent/maths/scipy_optimisers.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/text_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/rna_struct.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/phylip.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/pdb_color.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/xyzrn.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/pdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/structure.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/mage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/stockholm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/clustal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/nexus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/motif.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format copying build/lib.linux-armv7l-2.6/cogent/format/alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/format creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/moltype.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/alphabet.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/bitvector.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/annotation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/profile.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/location.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/info.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/entity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/usage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core copying build/lib.linux-armv7l-2.6/cogent/core/genetic_code.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/core creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/least_squares.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/tree_collection.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/tree_space.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/maximum_likelihood.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/nj.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/distance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.6/cogent/phylo/consensus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/phylo creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.6/cogent/recalculation/scope.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.6/cogent/recalculation/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.6/cogent/recalculation/definition.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.6/cogent/recalculation/calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.6/cogent/recalculation/setting.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/recalculation creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/motif copying build/lib.linux-armv7l-2.6/cogent/motif/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/motif copying build/lib.linux-armv7l-2.6/cogent/motif/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/motif copying build/lib.linux-armv7l-2.6/cogent/motif/k_word.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/motif creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/organizer.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/datatypes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/option_parsing.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/transform.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/warning.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/dict_array.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/recode_alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/terminal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/parallel.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/update_version.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/checkpointing.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/misc.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/modules.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/dict2d.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/trie.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/unit_test.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/progress_display.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util copying build/lib.linux-armv7l-2.6/cogent/util/array.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/util creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.6/cogent/cluster/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.6/cogent/cluster/approximate_mds.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.6/cogent/cluster/goodness_of_fit.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.6/cogent/cluster/procrustes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.6/cogent/cluster/nmds.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.6/cogent/cluster/metric_scaling.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.6/cogent/cluster/UPGMA.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/cluster creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/rna2d.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/knots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/_contact.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/contact.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/selection.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/annotation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/asa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/manipulation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/dihedral.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/_asa.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.6/cogent/struct/pairs_util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/struct creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/arrow_rates.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/compatibility.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/dotplot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/legend.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/dendrogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/codon_usage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/fancy_arrow.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/multivariate_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/rlg2mpl.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/linear.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.6/cogent/draw/dinuc.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/draw creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/data copying build/lib.linux-armv7l-2.6/cogent/data/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/data copying build/lib.linux-armv7l-2.6/cogent/data/protein_properties.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/data copying build/lib.linux-armv7l-2.6/cogent/data/energy_params.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/data copying build/lib.linux-armv7l-2.6/cogent/data/molecular_weight.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/data copying build/lib.linux-armv7l-2.6/cogent/data/ligand_properties.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/data copying build/lib.linux-armv7l-2.6/cogent/data/nucleic_properties.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/data creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/dotur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/formatdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/raxml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/parameters.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/gctmpca.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/foldalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/fasttree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/dynalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/clearcut.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/uclust.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/muscle.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/consan.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/mafft.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/cd_hit.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/pknotsrg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/sfffile.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/contrafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/rdp_classifier.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/cove.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/rnashapes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/comrna.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/unafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/sfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/stride.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/ilm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/mfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/sffinfo.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/clustalw.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/knetfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/pfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/infernal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/cmfinder.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/rnaforester.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/msms.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/dialign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/carnac.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/rnaview.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/vienna_package.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/mothur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/rdp_classifier20.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/fasttree_v1.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/nupack.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app copying build/lib.linux-armv7l-2.6/cogent/app/rnaalifold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/app creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/dotur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/psl.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/foldalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/column.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rna_fold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/dynalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/macsim.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/gff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/phylip.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/meme.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/consan.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/pknotsrg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/locuslink.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/contrafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/cove.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rnashapes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/comrna.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/unafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/sfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/stride.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/ilm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/bowtie.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/kegg_pos.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/ct.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/tinyseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/pdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/flowgram_collection.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/illumina_sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/mfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/gbseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/structure.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/cut.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/knetfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rna_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/unigene.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/flowgram_parser.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/mage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/blast_xml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/pfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/genbank.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/tree_xml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/record.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/bpseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/sprinzl.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rfam.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/stockholm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/gibbs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/clustal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/newick.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/record_finder.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/kegg_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/infernal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/cmfinder.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rnaforester.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/binary_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/msms.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/dialign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/aaindex.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/agilent_microarray.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/nexus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/carnac.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/kegg_ko.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/paml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rnaview.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/flowgram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/ebi.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/mothur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/greengenes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/cigar.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/ncbi_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/nupack.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/kegg_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/paml_matrix.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/rnaalifold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/gcg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.6/cogent/parse/cutg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/parse creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/sequence_generators.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/birth_death.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/analysis.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/randomization.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/microarray.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/searchpath.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/markov.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/microarray_normalize.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.6/cogent/seqsim/usage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/seqsim creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/likelihood_calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/bootstrap.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/predicate.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/substitution_model.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/solved_models.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/likelihood_function.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/pairwise_distance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/_likelihood_tree.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/_solved_models.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/substitution_calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/parameter_controller.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/_pairwise_distance.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/simulate.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/coevolution.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/likelihood_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/best_likelihood.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/models.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/motif_prob_model.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.6/cogent/evolve/discrete_markov.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/evolve creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/region.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/feature_level.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/database.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/name.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/compara.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/assembly.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/host.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/related_region.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/species.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/ensembl/genome.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.6/cogent/db/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db copying build/lib.linux-armv7l-2.6/cogent/db/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db copying build/lib.linux-armv7l-2.6/cogent/db/ncbi.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db copying build/lib.linux-armv7l-2.6/cogent/db/pdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db copying build/lib.linux-armv7l-2.6/cogent/db/rfam.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent/db running install_egg_info Writing /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.6/dist-packages/cogent-1.5.1.egg-info running install running build running build_py creating build/lib.linux-armv7l-2.7 creating build/lib.linux-armv7l-2.7/cogent copying cogent/__init__.py -> build/lib.linux-armv7l-2.7/cogent creating build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/traceback.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/algorithm.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/dp_calculation.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/__init__.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/pycompare.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/indel_model.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/indel_positions.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/partial_order_graph.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/progressive.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/align.py -> build/lib.linux-armv7l-2.7/cogent/align copying cogent/align/pairwise.py -> build/lib.linux-armv7l-2.7/cogent/align creating build/lib.linux-armv7l-2.7/cogent/align/weights copying cogent/align/weights/__init__.py -> build/lib.linux-armv7l-2.7/cogent/align/weights copying cogent/align/weights/util.py -> build/lib.linux-armv7l-2.7/cogent/align/weights copying cogent/align/weights/methods.py -> build/lib.linux-armv7l-2.7/cogent/align/weights creating build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/dotur.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/formatdb.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/raxml.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/parameters.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/gctmpca.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/foldalign.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/fasttree.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/__init__.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/dynalign.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/clearcut.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/uclust.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/muscle.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/consan.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/mafft.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/util.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/cd_hit.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/pknotsrg.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/sfffile.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/contrafold.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/rdp_classifier.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/cove.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/rnashapes.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/comrna.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/unafold.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/sfold.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/stride.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/ilm.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/mfold.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/sffinfo.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/clustalw.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/knetfold.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/pfold.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/infernal.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/cmfinder.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/rnaforester.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/msms.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/dialign.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/carnac.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/rnaview.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/vienna_package.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/mothur.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/rdp_classifier20.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/fasttree_v1.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/nupack.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/blast.py -> build/lib.linux-armv7l-2.7/cogent/app copying cogent/app/rnaalifold.py -> build/lib.linux-armv7l-2.7/cogent/app creating build/lib.linux-armv7l-2.7/cogent/cluster copying cogent/cluster/__init__.py -> build/lib.linux-armv7l-2.7/cogent/cluster copying cogent/cluster/approximate_mds.py -> build/lib.linux-armv7l-2.7/cogent/cluster copying cogent/cluster/goodness_of_fit.py -> build/lib.linux-armv7l-2.7/cogent/cluster copying cogent/cluster/procrustes.py -> build/lib.linux-armv7l-2.7/cogent/cluster copying cogent/cluster/nmds.py -> build/lib.linux-armv7l-2.7/cogent/cluster copying cogent/cluster/metric_scaling.py -> build/lib.linux-armv7l-2.7/cogent/cluster copying cogent/cluster/UPGMA.py -> build/lib.linux-armv7l-2.7/cogent/cluster creating build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/sequence.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/__init__.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/moltype.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/alphabet.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/bitvector.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/annotation.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/profile.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/tree.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/location.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/info.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/entity.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/usage.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/alignment.py -> build/lib.linux-armv7l-2.7/cogent/core copying cogent/core/genetic_code.py -> build/lib.linux-armv7l-2.7/cogent/core creating build/lib.linux-armv7l-2.7/cogent/data copying cogent/data/__init__.py -> build/lib.linux-armv7l-2.7/cogent/data copying cogent/data/protein_properties.py -> build/lib.linux-armv7l-2.7/cogent/data copying cogent/data/energy_params.py -> build/lib.linux-armv7l-2.7/cogent/data copying cogent/data/molecular_weight.py -> build/lib.linux-armv7l-2.7/cogent/data copying cogent/data/ligand_properties.py -> build/lib.linux-armv7l-2.7/cogent/data copying cogent/data/nucleic_properties.py -> build/lib.linux-armv7l-2.7/cogent/data creating build/lib.linux-armv7l-2.7/cogent/db copying cogent/db/__init__.py -> build/lib.linux-armv7l-2.7/cogent/db copying cogent/db/util.py -> build/lib.linux-armv7l-2.7/cogent/db copying cogent/db/ncbi.py -> build/lib.linux-armv7l-2.7/cogent/db copying cogent/db/pdb.py -> build/lib.linux-armv7l-2.7/cogent/db copying cogent/db/rfam.py -> build/lib.linux-armv7l-2.7/cogent/db creating build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/region.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/feature_level.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/database.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/sequence.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/__init__.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/name.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/util.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/compara.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/assembly.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/host.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/related_region.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/species.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl copying cogent/db/ensembl/genome.py -> build/lib.linux-armv7l-2.7/cogent/db/ensembl creating build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/arrow_rates.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/__init__.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/compatibility.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/util.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/dotplot.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/legend.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/dendrogram.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/codon_usage.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/fancy_arrow.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/multivariate_plot.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/rlg2mpl.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/linear.py -> build/lib.linux-armv7l-2.7/cogent/draw copying cogent/draw/dinuc.py -> build/lib.linux-armv7l-2.7/cogent/draw creating build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/likelihood_calculation.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/bootstrap.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/predicate.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/__init__.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/substitution_model.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/solved_models.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/likelihood_function.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/pairwise_distance.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/substitution_calculation.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/parameter_controller.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/simulate.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/coevolution.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/likelihood_tree.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/best_likelihood.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/models.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/motif_prob_model.py -> build/lib.linux-armv7l-2.7/cogent/evolve copying cogent/evolve/discrete_markov.py -> build/lib.linux-armv7l-2.7/cogent/evolve creating build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/text_tree.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/rna_struct.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/__init__.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/phylip.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/pdb_color.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/xyzrn.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/fasta.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/pdb.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/structure.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/mage.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/stockholm.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/clustal.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/table.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/nexus.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/motif.py -> build/lib.linux-armv7l-2.7/cogent/format copying cogent/format/alignment.py -> build/lib.linux-armv7l-2.7/cogent/format creating build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/fit_function.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/svd.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/__init__.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/solve.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/period.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/optimisers.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/simannealingoptimiser.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/distance_transform.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/matrix_logarithm.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/function_optimisation.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/matrix_exponentiation.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/geometry.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/markov.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/scipy_optimize.py -> build/lib.linux-armv7l-2.7/cogent/maths copying cogent/maths/scipy_optimisers.py -> build/lib.linux-armv7l-2.7/cogent/maths creating build/lib.linux-armv7l-2.7/cogent/maths/matrix copying cogent/maths/matrix/__init__.py -> build/lib.linux-armv7l-2.7/cogent/maths/matrix copying cogent/maths/matrix/distance.py -> build/lib.linux-armv7l-2.7/cogent/maths/matrix creating build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/special.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/jackknife.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/test.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/__init__.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/information_criteria.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/period.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/util.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/kendall.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/ks.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/alpha_diversity.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/rarefaction.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/distribution.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats copying cogent/maths/stats/histogram.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats creating build/lib.linux-armv7l-2.7/cogent/maths/stats/cai copying cogent/maths/stats/cai/__init__.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats/cai copying cogent/maths/stats/cai/util.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats/cai copying cogent/maths/stats/cai/get_by_cai.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats/cai copying cogent/maths/stats/cai/adaptor.py -> build/lib.linux-armv7l-2.7/cogent/maths/stats/cai creating build/lib.linux-armv7l-2.7/cogent/maths/unifrac copying cogent/maths/unifrac/__init__.py -> build/lib.linux-armv7l-2.7/cogent/maths/unifrac copying cogent/maths/unifrac/fast_unifrac.py -> build/lib.linux-armv7l-2.7/cogent/maths/unifrac copying cogent/maths/unifrac/fast_tree.py -> build/lib.linux-armv7l-2.7/cogent/maths/unifrac creating build/lib.linux-armv7l-2.7/cogent/maths/spatial copying cogent/maths/spatial/__init__.py -> build/lib.linux-armv7l-2.7/cogent/maths/spatial creating build/lib.linux-armv7l-2.7/cogent/motif copying cogent/motif/__init__.py -> build/lib.linux-armv7l-2.7/cogent/motif copying cogent/motif/util.py -> build/lib.linux-armv7l-2.7/cogent/motif copying cogent/motif/k_word.py -> build/lib.linux-armv7l-2.7/cogent/motif creating build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/dotur.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/psl.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/foldalign.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/column.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rna_fold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/sequence.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/__init__.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/dynalign.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/macsim.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/gff.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/phylip.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/meme.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/consan.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/pknotsrg.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/locuslink.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/contrafold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/cove.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rnashapes.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/comrna.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/unafold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/sfold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/stride.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/ilm.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/bowtie.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/kegg_pos.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/fasta.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/ct.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/tinyseq.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/pdb.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/flowgram_collection.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/illumina_sequence.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/mfold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/tree.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/gbseq.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/structure.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/cut.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/knetfold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rna_plot.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/unigene.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/flowgram_parser.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/mage.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/blast_xml.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/pfold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/genbank.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/tree_xml.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/record.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/fastq.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/bpseq.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/sprinzl.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rfam.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/stockholm.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/gibbs.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/clustal.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/newick.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/record_finder.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/table.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rdb.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/kegg_fasta.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/infernal.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/cmfinder.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rnaforester.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/binary_sff.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/msms.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/dialign.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/aaindex.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/agilent_microarray.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/nexus.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/carnac.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/kegg_ko.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/paml.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rnaview.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/flowgram.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/ebi.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/mothur.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/greengenes.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/cigar.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/ncbi_taxonomy.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/nupack.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/blast.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/kegg_taxonomy.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/paml_matrix.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/rnaalifold.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/gcg.py -> build/lib.linux-armv7l-2.7/cogent/parse copying cogent/parse/cutg.py -> build/lib.linux-armv7l-2.7/cogent/parse creating build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/least_squares.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/tree_collection.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/tree_space.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/__init__.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/util.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/maximum_likelihood.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/nj.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/distance.py -> build/lib.linux-armv7l-2.7/cogent/phylo copying cogent/phylo/consensus.py -> build/lib.linux-armv7l-2.7/cogent/phylo creating build/lib.linux-armv7l-2.7/cogent/recalculation copying cogent/recalculation/scope.py -> build/lib.linux-armv7l-2.7/cogent/recalculation copying cogent/recalculation/__init__.py -> build/lib.linux-armv7l-2.7/cogent/recalculation copying cogent/recalculation/definition.py -> build/lib.linux-armv7l-2.7/cogent/recalculation copying cogent/recalculation/calculation.py -> build/lib.linux-armv7l-2.7/cogent/recalculation copying cogent/recalculation/setting.py -> build/lib.linux-armv7l-2.7/cogent/recalculation creating build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/sequence_generators.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/__init__.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/birth_death.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/analysis.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/tree.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/randomization.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/microarray.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/searchpath.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/markov.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/microarray_normalize.py -> build/lib.linux-armv7l-2.7/cogent/seqsim copying cogent/seqsim/usage.py -> build/lib.linux-armv7l-2.7/cogent/seqsim creating build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/rna2d.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/knots.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/__init__.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/contact.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/selection.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/annotation.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/asa.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/manipulation.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/dihedral.py -> build/lib.linux-armv7l-2.7/cogent/struct copying cogent/struct/pairs_util.py -> build/lib.linux-armv7l-2.7/cogent/struct creating build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/organizer.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/datatypes.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/option_parsing.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/transform.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/__init__.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/warning.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/dict_array.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/recode_alignment.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/terminal.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/parallel.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/update_version.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/checkpointing.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/misc.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/modules.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/dict2d.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/trie.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/table.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/unit_test.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/progress_display.py -> build/lib.linux-armv7l-2.7/cogent/util copying cogent/util/array.py -> build/lib.linux-armv7l-2.7/cogent/util running build_ext skipping 'cogent/align/_compare.c' Cython extension (up-to-date) building 'cogent.align._compare' extension creating build/temp.linux-armv7l-2.7 creating build/temp.linux-armv7l-2.7/cogent creating build/temp.linux-armv7l-2.7/cogent/align gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_compare.c -o build/temp.linux-armv7l-2.7/cogent/align/_compare.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/align/_compare.o -o build/lib.linux-armv7l-2.7/cogent/align/_compare.so skipping 'cogent/align/_pairwise_seqs.c' Cython extension (up-to-date) building 'cogent.align._pairwise_seqs' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_seqs.c -o build/temp.linux-armv7l-2.7/cogent/align/_pairwise_seqs.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/align/_pairwise_seqs.o -o build/lib.linux-armv7l-2.7/cogent/align/_pairwise_seqs.so skipping 'cogent/align/_pairwise_pogs.c' Cython extension (up-to-date) building 'cogent.align._pairwise_pogs' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_pogs.c -o build/temp.linux-armv7l-2.7/cogent/align/_pairwise_pogs.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/align/_pairwise_pogs.o -o build/lib.linux-armv7l-2.7/cogent/align/_pairwise_pogs.so skipping 'cogent/evolve/_solved_models.c' Cython extension (up-to-date) building 'cogent.evolve._solved_models' extension creating build/temp.linux-armv7l-2.7/cogent/evolve gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_solved_models.c -o build/temp.linux-armv7l-2.7/cogent/evolve/_solved_models.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/evolve/_solved_models.o -o build/lib.linux-armv7l-2.7/cogent/evolve/_solved_models.so skipping 'cogent/evolve/_likelihood_tree.c' Cython extension (up-to-date) building 'cogent.evolve._likelihood_tree' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_likelihood_tree.c -o build/temp.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.o -o build/lib.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.so skipping 'cogent/evolve/_pairwise_distance.c' Cython extension (up-to-date) building 'cogent.evolve._pairwise_distance' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_pairwise_distance.c -o build/temp.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.o -o build/lib.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.so skipping 'cogent/struct/_asa.c' Cython extension (up-to-date) building 'cogent.struct._asa' extension creating build/temp.linux-armv7l-2.7/cogent/struct gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_asa.c -o build/temp.linux-armv7l-2.7/cogent/struct/_asa.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/struct/_asa.o -o build/lib.linux-armv7l-2.7/cogent/struct/_asa.so skipping 'cogent/struct/_contact.c' Cython extension (up-to-date) building 'cogent.struct._contact' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_contact.c -o build/temp.linux-armv7l-2.7/cogent/struct/_contact.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/struct/_contact.o -o build/lib.linux-armv7l-2.7/cogent/struct/_contact.so skipping 'cogent/maths/_period.c' Cython extension (up-to-date) building 'cogent.maths._period' extension creating build/temp.linux-armv7l-2.7/cogent/maths gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/_period.c -o build/temp.linux-armv7l-2.7/cogent/maths/_period.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/maths/_period.o -o build/lib.linux-armv7l-2.7/cogent/maths/_period.so skipping 'cogent/maths/spatial/ckd3.c' Cython extension (up-to-date) building 'cogent.maths.spatial.ckd3' extension creating build/temp.linux-armv7l-2.7/cogent/maths/spatial gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/«PKGBUILDDIR»/include -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/spatial/ckd3.c -o build/temp.linux-armv7l-2.7/cogent/maths/spatial/ckd3.o -w gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-2.7/cogent/maths/spatial/ckd3.o -o build/lib.linux-armv7l-2.7/cogent/maths/spatial/ckd3.so running install_lib creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/traceback.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/algorithm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/dp_calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/_pairwise_seqs.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/pycompare.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/indel_model.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/indel_positions.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/_compare.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/_pairwise_pogs.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/partial_order_graph.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/progressive.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/align.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align copying build/lib.linux-armv7l-2.7/cogent/align/pairwise.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.7/cogent/align/weights/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.7/cogent/align/weights/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.7/cogent/align/weights/methods.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/align/weights copying build/lib.linux-armv7l-2.7/cogent/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/_period.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/fit_function.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/svd.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/solve.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/period.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.7/cogent/maths/unifrac/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.7/cogent/maths/unifrac/fast_unifrac.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.7/cogent/maths/unifrac/fast_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/unifrac copying build/lib.linux-armv7l-2.7/cogent/maths/optimisers.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/simannealingoptimiser.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/distance_transform.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/matrix_logarithm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/matrix copying build/lib.linux-armv7l-2.7/cogent/maths/matrix/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/matrix copying build/lib.linux-armv7l-2.7/cogent/maths/matrix/distance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/matrix copying build/lib.linux-armv7l-2.7/cogent/maths/function_optimisation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/matrix_exponentiation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/geometry.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/special.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.7/cogent/maths/stats/cai/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.7/cogent/maths/stats/cai/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.7/cogent/maths/stats/cai/get_by_cai.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.7/cogent/maths/stats/cai/adaptor.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying build/lib.linux-armv7l-2.7/cogent/maths/stats/jackknife.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/test.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/information_criteria.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/period.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/kendall.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/ks.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/alpha_diversity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/rarefaction.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/distribution.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats copying build/lib.linux-armv7l-2.7/cogent/maths/stats/histogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/stats creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/spatial copying build/lib.linux-armv7l-2.7/cogent/maths/spatial/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/spatial copying build/lib.linux-armv7l-2.7/cogent/maths/spatial/ckd3.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths/spatial copying build/lib.linux-armv7l-2.7/cogent/maths/markov.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/scipy_optimize.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths copying build/lib.linux-armv7l-2.7/cogent/maths/scipy_optimisers.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/maths creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/text_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/rna_struct.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/phylip.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/pdb_color.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/xyzrn.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/pdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/structure.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/mage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/stockholm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/clustal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/nexus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/motif.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format copying build/lib.linux-armv7l-2.7/cogent/format/alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/format creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/moltype.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/alphabet.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/bitvector.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/annotation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/profile.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/location.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/info.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/entity.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/usage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core copying build/lib.linux-armv7l-2.7/cogent/core/genetic_code.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/core creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/least_squares.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/tree_collection.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/tree_space.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/maximum_likelihood.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/nj.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/distance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo copying build/lib.linux-armv7l-2.7/cogent/phylo/consensus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/phylo creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.7/cogent/recalculation/scope.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.7/cogent/recalculation/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.7/cogent/recalculation/definition.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.7/cogent/recalculation/calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/recalculation copying build/lib.linux-armv7l-2.7/cogent/recalculation/setting.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/recalculation creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/motif copying build/lib.linux-armv7l-2.7/cogent/motif/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/motif copying build/lib.linux-armv7l-2.7/cogent/motif/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/motif copying build/lib.linux-armv7l-2.7/cogent/motif/k_word.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/motif creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/organizer.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/datatypes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/option_parsing.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/transform.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/warning.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/dict_array.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/recode_alignment.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/terminal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/parallel.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/update_version.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/checkpointing.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/misc.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/modules.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/dict2d.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/trie.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/unit_test.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/progress_display.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util copying build/lib.linux-armv7l-2.7/cogent/util/array.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/util creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.7/cogent/cluster/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.7/cogent/cluster/approximate_mds.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.7/cogent/cluster/goodness_of_fit.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.7/cogent/cluster/procrustes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.7/cogent/cluster/nmds.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.7/cogent/cluster/metric_scaling.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster copying build/lib.linux-armv7l-2.7/cogent/cluster/UPGMA.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/cluster creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/rna2d.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/knots.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/_contact.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/contact.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/selection.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/annotation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/asa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/manipulation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/dihedral.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/_asa.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct copying build/lib.linux-armv7l-2.7/cogent/struct/pairs_util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/struct creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/arrow_rates.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/compatibility.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/dotplot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/legend.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/dendrogram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/codon_usage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/fancy_arrow.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/multivariate_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/rlg2mpl.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/linear.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw copying build/lib.linux-armv7l-2.7/cogent/draw/dinuc.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/draw creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/data copying build/lib.linux-armv7l-2.7/cogent/data/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/data copying build/lib.linux-armv7l-2.7/cogent/data/protein_properties.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/data copying build/lib.linux-armv7l-2.7/cogent/data/energy_params.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/data copying build/lib.linux-armv7l-2.7/cogent/data/molecular_weight.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/data copying build/lib.linux-armv7l-2.7/cogent/data/ligand_properties.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/data copying build/lib.linux-armv7l-2.7/cogent/data/nucleic_properties.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/data creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/dotur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/formatdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/raxml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/parameters.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/gctmpca.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/foldalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/fasttree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/dynalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/clearcut.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/uclust.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/muscle.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/consan.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/mafft.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/cd_hit.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/pknotsrg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/sfffile.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/contrafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/rdp_classifier.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/cove.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/rnashapes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/comrna.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/unafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/sfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/stride.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/ilm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/mfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/sffinfo.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/clustalw.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/knetfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/pfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/infernal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/cmfinder.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/rnaforester.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/msms.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/dialign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/carnac.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/rnaview.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/vienna_package.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/mothur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/rdp_classifier20.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/fasttree_v1.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/nupack.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app copying build/lib.linux-armv7l-2.7/cogent/app/rnaalifold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/app creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/dotur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/psl.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/foldalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/column.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rna_fold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/dynalign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/macsim.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/gff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/phylip.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/meme.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/consan.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/pknotsrg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/locuslink.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/contrafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/cove.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rnashapes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/comrna.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/unafold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/sfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/stride.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/ilm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/bowtie.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/kegg_pos.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/ct.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/tinyseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/pdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/flowgram_collection.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/illumina_sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/mfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/gbseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/structure.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/cut.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/knetfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rna_plot.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/unigene.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/flowgram_parser.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/mage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/blast_xml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/pfold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/genbank.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/tree_xml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/record.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/fastq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/bpseq.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/sprinzl.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rfam.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/stockholm.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/gibbs.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/clustal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/newick.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/record_finder.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/table.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/kegg_fasta.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/infernal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/cmfinder.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rnaforester.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/binary_sff.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/msms.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/dialign.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/aaindex.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/agilent_microarray.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/nexus.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/carnac.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/kegg_ko.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/paml.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rnaview.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/flowgram.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/ebi.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/mothur.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/greengenes.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/cigar.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/ncbi_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/nupack.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/blast.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/kegg_taxonomy.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/paml_matrix.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/rnaalifold.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/gcg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse copying build/lib.linux-armv7l-2.7/cogent/parse/cutg.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/parse creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/sequence_generators.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/birth_death.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/analysis.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/randomization.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/microarray.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/searchpath.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/markov.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/microarray_normalize.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim copying build/lib.linux-armv7l-2.7/cogent/seqsim/usage.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/seqsim creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/likelihood_calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/bootstrap.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/predicate.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/substitution_model.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/solved_models.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/likelihood_function.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/pairwise_distance.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/_solved_models.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/substitution_calculation.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/parameter_controller.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/simulate.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/coevolution.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/likelihood_tree.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/best_likelihood.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/models.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/motif_prob_model.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve copying build/lib.linux-armv7l-2.7/cogent/evolve/discrete_markov.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/evolve creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/region.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/feature_level.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/database.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/sequence.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/name.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/compara.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/assembly.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/host.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/related_region.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/species.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/ensembl/genome.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db/ensembl copying build/lib.linux-armv7l-2.7/cogent/db/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db copying build/lib.linux-armv7l-2.7/cogent/db/util.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db copying build/lib.linux-armv7l-2.7/cogent/db/ncbi.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db copying build/lib.linux-armv7l-2.7/cogent/db/pdb.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db copying build/lib.linux-armv7l-2.7/cogent/db/rfam.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent/db running install_egg_info Writing /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/cogent-1.5.1.egg-info dh_install -a debian/rules override_dh_installdocs make[1]: Entering directory `/«PKGBUILDDIR»' dh_installdocs rm -rf debian/python-cogent/usr/share/doc/python-cogent/html/_sources make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_python2 -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/«PKGBUILDDIR»' dh_compress --exclude=.js --exclude=.fasta --exclude=.txt --exclude=.pdb make[1]: Leaving directory `/«PKGBUILDDIR»' dh_fixperms -a debian/rules override_dh_strip make[1]: Entering directory `/«PKGBUILDDIR»' dh_strip --dbg-package=python-cogent-dbg make[1]: Leaving directory `/«PKGBUILDDIR»' dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package python-cogent: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python-cogent: unused substitution variable ${python:Provides} dh_md5sums -a dh_builddeb -a dpkg-deb: building package `python-cogent' in `../python-cogent_1.5.1-2_armhf.deb'. dpkg-deb: building package `python-cogent-dbg' in `../python-cogent-dbg_1.5.1-2_armhf.deb'. dpkg-genchanges -B -mbuildd >../python-cogent_1.5.1-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build python-cogent-1.5.1 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120509-0310 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ python-cogent_1.5.1-2_armhf.changes: ──────────────────────────────────── Format: 1.8 Date: Sun, 04 Sep 2011 10:49:49 +0200 Source: python-cogent Binary: python-cogent python-cogent-dbg Architecture: armhf Version: 1.5.1-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Steffen Moeller Description: python-cogent - framework for genomic biology python-cogent-dbg - debug information for pycogent Closes: 640262 Changes: python-cogent (1.5.1-2) unstable; urgency=low . * Explicitly added python-numpy as dependency to binary ... where is the dh_shlibdeps? Many thanks to Jakub (Closes: #640262). * Added build-dependency on cython after look in setup.py * Some further formatting in debian/control * Added -dbg package * Fiddled with debian/*.install to actually install the libraries and fill that -dbg package. * Added dependency to underscore.js Checksums-Sha1: 4c31d47847e63449bfe98f7bfe95b3e6e02a348c 1885080 python-cogent_1.5.1-2_armhf.deb 63ad55ee74a99520c972a10565e6dcca8c85ecc4 713274 python-cogent-dbg_1.5.1-2_armhf.deb Checksums-Sha256: f5ff61f72b94c595b765b317c03e018240ebe1dd8aeff4e2f8e5a1da7e84b9f5 1885080 python-cogent_1.5.1-2_armhf.deb 29cbef23fb6006b80f317cfe0a8122c33782f3070a47320554dbe3ac73f42a8f 713274 python-cogent-dbg_1.5.1-2_armhf.deb Files: 4a7e322a59eb29dfb94c4a60e4c6fa76 1885080 python extra python-cogent_1.5.1-2_armhf.deb 24567ca3f1be104cdf74839cbed2a670 713274 debug extra python-cogent-dbg_1.5.1-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ python-cogent_1.5.1-2_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 1885080 bytes: control archive= 15451 bytes. 961 bytes, 20 lines control 41913 bytes, 496 lines md5sums 163 bytes, 9 lines * postinst #!/bin/sh 263 bytes, 14 lines * prerm #!/bin/sh Package: python-cogent Version: 1.5.1-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 8287 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), python2.7 | python2.6, python (>= 2.6.6-7~), python (<< 2.8), libjs-jquery, libjs-underscore, python-numpy (>= 1.3.0) Section: python Priority: extra Homepage: http://pycogent.sourceforge.net/ Description: framework for genomic biology PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: * controlling third-party applications, * devising workflows; querying databases, * conducting novel probabilistic analyses of biological sequence evolution, and * generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. drwxr-xr-x root/root 0 2012-05-09 03:09 ./ drwxr-xr-x root/root 0 2012-05-09 03:09 ./usr/ drwxr-xr-x root/root 0 2012-05-09 03:09 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-09 03:09 ./usr/lib/pyshared/ drwxr-xr-x root/root 0 2012-05-09 03:09 ./usr/lib/pyshared/python2.7/ drwxr-xr-x root/root 0 2012-05-09 03:09 ./usr/lib/pyshared/python2.7/cogent/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.7/cogent/align/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.7/cogent/maths/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.7/cogent/maths/spatial/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.7/cogent/struct/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.7/cogent/evolve/ drwxr-xr-x root/root 0 2012-05-09 03:09 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./usr/lib/pyshared/python2.7/cogent/evolve/_pairwise_distance.so -> ../../../../python2.7/dist-packages/cogent/evolve/_pairwise_distance.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/align/_pairwise_seqs.so -> ../../../../python2.6/dist-packages/cogent/align/_pairwise_seqs.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/align/_compare.so -> ../../../../python2.6/dist-packages/cogent/align/_compare.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/align/_pairwise_pogs.so -> ../../../../python2.6/dist-packages/cogent/align/_pairwise_pogs.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/maths/_period.so -> ../../../../python2.6/dist-packages/cogent/maths/_period.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/maths/spatial/ckd3.so -> ../../../../../python2.6/dist-packages/cogent/maths/spatial/ckd3.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/struct/_contact.so -> ../../../../python2.6/dist-packages/cogent/struct/_contact.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/struct/_asa.so -> ../../../../python2.6/dist-packages/cogent/struct/_asa.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/evolve/_likelihood_tree.so -> ../../../../python2.6/dist-packages/cogent/evolve/_likelihood_tree.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/evolve/_solved_models.so -> ../../../../python2.6/dist-packages/cogent/evolve/_solved_models.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/pyshared/python2.6/cogent/evolve/_pairwise_distance.so -> ../../../../python2.6/dist-packages/cogent/evolve/_pairwise_distance.so lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/traceback.py -> ../../../../../share/pyshared/cogent/align/traceback.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/algorithm.py -> ../../../../../share/pyshared/cogent/align/algorithm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py -> ../../../../../share/pyshared/cogent/align/dp_calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/__init__.py -> ../../../../../share/pyshared/cogent/align/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/pycompare.py -> ../../../../../share/pyshared/cogent/align/pycompare.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/indel_model.py -> ../../../../../share/pyshared/cogent/align/indel_model.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py -> ../../../../../share/pyshared/cogent/align/indel_positions.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/partial_order_graph.py -> ../../../../../share/pyshared/cogent/align/partial_order_graph.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/progressive.py -> ../../../../../share/pyshared/cogent/align/progressive.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/align.py -> ../../../../../share/pyshared/cogent/align/align.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/pairwise.py -> ../../../../../share/pyshared/cogent/align/pairwise.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py -> ../../../../../../share/pyshared/cogent/align/weights/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/weights/util.py -> ../../../../../../share/pyshared/cogent/align/weights/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py -> ../../../../../../share/pyshared/cogent/align/weights/methods.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/__init__.py -> ../../../../share/pyshared/cogent/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/fit_function.py -> ../../../../../share/pyshared/cogent/maths/fit_function.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/svd.py -> ../../../../../share/pyshared/cogent/maths/svd.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/__init__.py -> ../../../../../share/pyshared/cogent/maths/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/solve.py -> ../../../../../share/pyshared/cogent/maths/solve.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/period.py -> ../../../../../share/pyshared/cogent/maths/period.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/unifrac/__init__.py -> ../../../../../../share/pyshared/cogent/maths/unifrac/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_unifrac.py -> ../../../../../../share/pyshared/cogent/maths/unifrac/fast_unifrac.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_tree.py -> ../../../../../../share/pyshared/cogent/maths/unifrac/fast_tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/optimisers.py -> ../../../../../share/pyshared/cogent/maths/optimisers.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/simannealingoptimiser.py -> ../../../../../share/pyshared/cogent/maths/simannealingoptimiser.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/distance_transform.py -> ../../../../../share/pyshared/cogent/maths/distance_transform.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/matrix_logarithm.py -> ../../../../../share/pyshared/cogent/maths/matrix_logarithm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/matrix/__init__.py -> ../../../../../../share/pyshared/cogent/maths/matrix/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/matrix/distance.py -> ../../../../../../share/pyshared/cogent/maths/matrix/distance.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/function_optimisation.py -> ../../../../../share/pyshared/cogent/maths/function_optimisation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponentiation.py -> ../../../../../share/pyshared/cogent/maths/matrix_exponentiation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/geometry.py -> ../../../../../share/pyshared/cogent/maths/geometry.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/special.py -> ../../../../../../share/pyshared/cogent/maths/stats/special.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/__init__.py -> ../../../../../../../share/pyshared/cogent/maths/stats/cai/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/util.py -> ../../../../../../../share/pyshared/cogent/maths/stats/cai/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/get_by_cai.py -> ../../../../../../../share/pyshared/cogent/maths/stats/cai/get_by_cai.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/adaptor.py -> ../../../../../../../share/pyshared/cogent/maths/stats/cai/adaptor.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/jackknife.py -> ../../../../../../share/pyshared/cogent/maths/stats/jackknife.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/test.py -> ../../../../../../share/pyshared/cogent/maths/stats/test.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/__init__.py -> ../../../../../../share/pyshared/cogent/maths/stats/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/information_criteria.py -> ../../../../../../share/pyshared/cogent/maths/stats/information_criteria.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/period.py -> ../../../../../../share/pyshared/cogent/maths/stats/period.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/util.py -> ../../../../../../share/pyshared/cogent/maths/stats/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/kendall.py -> ../../../../../../share/pyshared/cogent/maths/stats/kendall.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/ks.py -> ../../../../../../share/pyshared/cogent/maths/stats/ks.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/alpha_diversity.py -> ../../../../../../share/pyshared/cogent/maths/stats/alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/rarefaction.py -> ../../../../../../share/pyshared/cogent/maths/stats/rarefaction.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/distribution.py -> ../../../../../../share/pyshared/cogent/maths/stats/distribution.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/stats/histogram.py -> ../../../../../../share/pyshared/cogent/maths/stats/histogram.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/spatial/__init__.py -> ../../../../../../share/pyshared/cogent/maths/spatial/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/markov.py -> ../../../../../share/pyshared/cogent/maths/markov.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimize.py -> ../../../../../share/pyshared/cogent/maths/scipy_optimize.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimisers.py -> ../../../../../share/pyshared/cogent/maths/scipy_optimisers.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/text_tree.py -> ../../../../../share/pyshared/cogent/format/text_tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/rna_struct.py -> ../../../../../share/pyshared/cogent/format/rna_struct.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/__init__.py -> ../../../../../share/pyshared/cogent/format/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/phylip.py -> ../../../../../share/pyshared/cogent/format/phylip.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py -> ../../../../../share/pyshared/cogent/format/pdb_color.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/xyzrn.py -> ../../../../../share/pyshared/cogent/format/xyzrn.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/fasta.py -> ../../../../../share/pyshared/cogent/format/fasta.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/pdb.py -> ../../../../../share/pyshared/cogent/format/pdb.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/structure.py -> ../../../../../share/pyshared/cogent/format/structure.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/mage.py -> ../../../../../share/pyshared/cogent/format/mage.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/stockholm.py -> ../../../../../share/pyshared/cogent/format/stockholm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/clustal.py -> ../../../../../share/pyshared/cogent/format/clustal.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/table.py -> ../../../../../share/pyshared/cogent/format/table.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/nexus.py -> ../../../../../share/pyshared/cogent/format/nexus.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/motif.py -> ../../../../../share/pyshared/cogent/format/motif.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/format/alignment.py -> ../../../../../share/pyshared/cogent/format/alignment.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/sequence.py -> ../../../../../share/pyshared/cogent/core/sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/__init__.py -> ../../../../../share/pyshared/cogent/core/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/moltype.py -> ../../../../../share/pyshared/cogent/core/moltype.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/alphabet.py -> ../../../../../share/pyshared/cogent/core/alphabet.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/bitvector.py -> ../../../../../share/pyshared/cogent/core/bitvector.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/annotation.py -> ../../../../../share/pyshared/cogent/core/annotation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/profile.py -> ../../../../../share/pyshared/cogent/core/profile.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/tree.py -> ../../../../../share/pyshared/cogent/core/tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/location.py -> ../../../../../share/pyshared/cogent/core/location.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/info.py -> ../../../../../share/pyshared/cogent/core/info.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/entity.py -> ../../../../../share/pyshared/cogent/core/entity.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/usage.py -> ../../../../../share/pyshared/cogent/core/usage.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/alignment.py -> ../../../../../share/pyshared/cogent/core/alignment.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py -> ../../../../../share/pyshared/cogent/core/genetic_code.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/least_squares.py -> ../../../../../share/pyshared/cogent/phylo/least_squares.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/tree_collection.py -> ../../../../../share/pyshared/cogent/phylo/tree_collection.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/tree_space.py -> ../../../../../share/pyshared/cogent/phylo/tree_space.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/__init__.py -> ../../../../../share/pyshared/cogent/phylo/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/util.py -> ../../../../../share/pyshared/cogent/phylo/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/maximum_likelihood.py -> ../../../../../share/pyshared/cogent/phylo/maximum_likelihood.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/nj.py -> ../../../../../share/pyshared/cogent/phylo/nj.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/distance.py -> ../../../../../share/pyshared/cogent/phylo/distance.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/phylo/consensus.py -> ../../../../../share/pyshared/cogent/phylo/consensus.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/recalculation/scope.py -> ../../../../../share/pyshared/cogent/recalculation/scope.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/recalculation/__init__.py -> ../../../../../share/pyshared/cogent/recalculation/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/recalculation/definition.py -> ../../../../../share/pyshared/cogent/recalculation/definition.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/recalculation/calculation.py -> ../../../../../share/pyshared/cogent/recalculation/calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/recalculation/setting.py -> ../../../../../share/pyshared/cogent/recalculation/setting.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/motif/__init__.py -> ../../../../../share/pyshared/cogent/motif/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/motif/util.py -> ../../../../../share/pyshared/cogent/motif/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/motif/k_word.py -> ../../../../../share/pyshared/cogent/motif/k_word.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/organizer.py -> ../../../../../share/pyshared/cogent/util/organizer.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/datatypes.py -> ../../../../../share/pyshared/cogent/util/datatypes.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/option_parsing.py -> ../../../../../share/pyshared/cogent/util/option_parsing.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/transform.py -> ../../../../../share/pyshared/cogent/util/transform.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/__init__.py -> ../../../../../share/pyshared/cogent/util/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/warning.py -> ../../../../../share/pyshared/cogent/util/warning.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/dict_array.py -> ../../../../../share/pyshared/cogent/util/dict_array.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/recode_alignment.py -> ../../../../../share/pyshared/cogent/util/recode_alignment.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/terminal.py -> ../../../../../share/pyshared/cogent/util/terminal.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/parallel.py -> ../../../../../share/pyshared/cogent/util/parallel.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/update_version.py -> ../../../../../share/pyshared/cogent/util/update_version.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/checkpointing.py -> ../../../../../share/pyshared/cogent/util/checkpointing.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/misc.py -> ../../../../../share/pyshared/cogent/util/misc.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/modules.py -> ../../../../../share/pyshared/cogent/util/modules.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/dict2d.py -> ../../../../../share/pyshared/cogent/util/dict2d.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/trie.py -> ../../../../../share/pyshared/cogent/util/trie.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/table.py -> ../../../../../share/pyshared/cogent/util/table.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/unit_test.py -> ../../../../../share/pyshared/cogent/util/unit_test.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/progress_display.py -> ../../../../../share/pyshared/cogent/util/progress_display.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/util/array.py -> ../../../../../share/pyshared/cogent/util/array.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py -> ../../../../../share/pyshared/cogent/cluster/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py -> ../../../../../share/pyshared/cogent/cluster/approximate_mds.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py -> ../../../../../share/pyshared/cogent/cluster/goodness_of_fit.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py -> ../../../../../share/pyshared/cogent/cluster/procrustes.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py -> ../../../../../share/pyshared/cogent/cluster/nmds.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py -> ../../../../../share/pyshared/cogent/cluster/metric_scaling.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py -> ../../../../../share/pyshared/cogent/cluster/UPGMA.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/rna2d.py -> ../../../../../share/pyshared/cogent/struct/rna2d.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/knots.py -> ../../../../../share/pyshared/cogent/struct/knots.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/__init__.py -> ../../../../../share/pyshared/cogent/struct/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/contact.py -> ../../../../../share/pyshared/cogent/struct/contact.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/selection.py -> ../../../../../share/pyshared/cogent/struct/selection.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/annotation.py -> ../../../../../share/pyshared/cogent/struct/annotation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/asa.py -> ../../../../../share/pyshared/cogent/struct/asa.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/manipulation.py -> ../../../../../share/pyshared/cogent/struct/manipulation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/dihedral.py -> ../../../../../share/pyshared/cogent/struct/dihedral.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/struct/pairs_util.py -> ../../../../../share/pyshared/cogent/struct/pairs_util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py -> ../../../../../share/pyshared/cogent/draw/arrow_rates.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/__init__.py -> ../../../../../share/pyshared/cogent/draw/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py -> ../../../../../share/pyshared/cogent/draw/compatibility.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/util.py -> ../../../../../share/pyshared/cogent/draw/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py -> ../../../../../share/pyshared/cogent/draw/dotplot.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/legend.py -> ../../../../../share/pyshared/cogent/draw/legend.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py -> ../../../../../share/pyshared/cogent/draw/dendrogram.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py -> ../../../../../share/pyshared/cogent/draw/codon_usage.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py -> ../../../../../share/pyshared/cogent/draw/fancy_arrow.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py -> ../../../../../share/pyshared/cogent/draw/multivariate_plot.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py -> ../../../../../share/pyshared/cogent/draw/rlg2mpl.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/linear.py -> ../../../../../share/pyshared/cogent/draw/linear.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py -> ../../../../../share/pyshared/cogent/draw/dinuc.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/data/__init__.py -> ../../../../../share/pyshared/cogent/data/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/data/protein_properties.py -> ../../../../../share/pyshared/cogent/data/protein_properties.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/data/energy_params.py -> ../../../../../share/pyshared/cogent/data/energy_params.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/data/molecular_weight.py -> ../../../../../share/pyshared/cogent/data/molecular_weight.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/data/ligand_properties.py -> ../../../../../share/pyshared/cogent/data/ligand_properties.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/data/nucleic_properties.py -> ../../../../../share/pyshared/cogent/data/nucleic_properties.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/dotur.py -> ../../../../../share/pyshared/cogent/app/dotur.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/formatdb.py -> ../../../../../share/pyshared/cogent/app/formatdb.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/raxml.py -> ../../../../../share/pyshared/cogent/app/raxml.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/parameters.py -> ../../../../../share/pyshared/cogent/app/parameters.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/gctmpca.py -> ../../../../../share/pyshared/cogent/app/gctmpca.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/foldalign.py -> ../../../../../share/pyshared/cogent/app/foldalign.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/fasttree.py -> ../../../../../share/pyshared/cogent/app/fasttree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/__init__.py -> ../../../../../share/pyshared/cogent/app/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/dynalign.py -> ../../../../../share/pyshared/cogent/app/dynalign.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/clearcut.py -> ../../../../../share/pyshared/cogent/app/clearcut.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/uclust.py -> ../../../../../share/pyshared/cogent/app/uclust.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/muscle.py -> ../../../../../share/pyshared/cogent/app/muscle.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/consan.py -> ../../../../../share/pyshared/cogent/app/consan.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/mafft.py -> ../../../../../share/pyshared/cogent/app/mafft.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/util.py -> ../../../../../share/pyshared/cogent/app/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py -> ../../../../../share/pyshared/cogent/app/cd_hit.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py -> ../../../../../share/pyshared/cogent/app/pknotsrg.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/sfffile.py -> ../../../../../share/pyshared/cogent/app/sfffile.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/contrafold.py -> ../../../../../share/pyshared/cogent/app/contrafold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py -> ../../../../../share/pyshared/cogent/app/rdp_classifier.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/cove.py -> ../../../../../share/pyshared/cogent/app/cove.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py -> ../../../../../share/pyshared/cogent/app/rnashapes.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/comrna.py -> ../../../../../share/pyshared/cogent/app/comrna.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/unafold.py -> ../../../../../share/pyshared/cogent/app/unafold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/sfold.py -> ../../../../../share/pyshared/cogent/app/sfold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/stride.py -> ../../../../../share/pyshared/cogent/app/stride.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/ilm.py -> ../../../../../share/pyshared/cogent/app/ilm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/mfold.py -> ../../../../../share/pyshared/cogent/app/mfold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py -> ../../../../../share/pyshared/cogent/app/sffinfo.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/clustalw.py -> ../../../../../share/pyshared/cogent/app/clustalw.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/knetfold.py -> ../../../../../share/pyshared/cogent/app/knetfold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/pfold.py -> ../../../../../share/pyshared/cogent/app/pfold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/infernal.py -> ../../../../../share/pyshared/cogent/app/infernal.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py -> ../../../../../share/pyshared/cogent/app/cmfinder.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/rnaforester.py -> ../../../../../share/pyshared/cogent/app/rnaforester.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/msms.py -> ../../../../../share/pyshared/cogent/app/msms.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/dialign.py -> ../../../../../share/pyshared/cogent/app/dialign.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/carnac.py -> ../../../../../share/pyshared/cogent/app/carnac.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/rnaview.py -> ../../../../../share/pyshared/cogent/app/rnaview.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py -> ../../../../../share/pyshared/cogent/app/vienna_package.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/mothur.py -> ../../../../../share/pyshared/cogent/app/mothur.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py -> ../../../../../share/pyshared/cogent/app/rdp_classifier20.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py -> ../../../../../share/pyshared/cogent/app/fasttree_v1.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/nupack.py -> ../../../../../share/pyshared/cogent/app/nupack.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/blast.py -> ../../../../../share/pyshared/cogent/app/blast.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/app/rnaalifold.py -> ../../../../../share/pyshared/cogent/app/rnaalifold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/dotur.py -> ../../../../../share/pyshared/cogent/parse/dotur.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/psl.py -> ../../../../../share/pyshared/cogent/parse/psl.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/foldalign.py -> ../../../../../share/pyshared/cogent/parse/foldalign.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/column.py -> ../../../../../share/pyshared/cogent/parse/column.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/rna_fold.py -> ../../../../../share/pyshared/cogent/parse/rna_fold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/sequence.py -> ../../../../../share/pyshared/cogent/parse/sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/__init__.py -> ../../../../../share/pyshared/cogent/parse/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/dynalign.py -> ../../../../../share/pyshared/cogent/parse/dynalign.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/macsim.py -> ../../../../../share/pyshared/cogent/parse/macsim.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/gff.py -> ../../../../../share/pyshared/cogent/parse/gff.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/phylip.py -> ../../../../../share/pyshared/cogent/parse/phylip.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/meme.py -> ../../../../../share/pyshared/cogent/parse/meme.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/consan.py -> ../../../../../share/pyshared/cogent/parse/consan.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/pknotsrg.py -> 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lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/sfold.py -> ../../../../../share/pyshared/cogent/parse/sfold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/stride.py -> ../../../../../share/pyshared/cogent/parse/stride.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/ilm.py -> ../../../../../share/pyshared/cogent/parse/ilm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/bowtie.py -> ../../../../../share/pyshared/cogent/parse/bowtie.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/kegg_pos.py -> ../../../../../share/pyshared/cogent/parse/kegg_pos.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/fasta.py -> ../../../../../share/pyshared/cogent/parse/fasta.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/ct.py -> ../../../../../share/pyshared/cogent/parse/ct.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/tinyseq.py -> ../../../../../share/pyshared/cogent/parse/tinyseq.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/pdb.py -> ../../../../../share/pyshared/cogent/parse/pdb.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/flowgram_collection.py -> ../../../../../share/pyshared/cogent/parse/flowgram_collection.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/illumina_sequence.py -> ../../../../../share/pyshared/cogent/parse/illumina_sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/mfold.py -> ../../../../../share/pyshared/cogent/parse/mfold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/tree.py -> ../../../../../share/pyshared/cogent/parse/tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/gbseq.py -> ../../../../../share/pyshared/cogent/parse/gbseq.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/structure.py -> ../../../../../share/pyshared/cogent/parse/structure.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/cut.py -> ../../../../../share/pyshared/cogent/parse/cut.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/knetfold.py -> ../../../../../share/pyshared/cogent/parse/knetfold.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/rna_plot.py -> ../../../../../share/pyshared/cogent/parse/rna_plot.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/unigene.py -> 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lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/record.py -> ../../../../../share/pyshared/cogent/parse/record.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/fastq.py -> ../../../../../share/pyshared/cogent/parse/fastq.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/bpseq.py -> ../../../../../share/pyshared/cogent/parse/bpseq.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/sprinzl.py -> ../../../../../share/pyshared/cogent/parse/sprinzl.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/rfam.py -> ../../../../../share/pyshared/cogent/parse/rfam.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/stockholm.py -> ../../../../../share/pyshared/cogent/parse/stockholm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 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lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/aaindex.py -> ../../../../../share/pyshared/cogent/parse/aaindex.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/agilent_microarray.py -> ../../../../../share/pyshared/cogent/parse/agilent_microarray.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/nexus.py -> ../../../../../share/pyshared/cogent/parse/nexus.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/carnac.py -> ../../../../../share/pyshared/cogent/parse/carnac.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/kegg_ko.py -> ../../../../../share/pyshared/cogent/parse/kegg_ko.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/paml.py -> ../../../../../share/pyshared/cogent/parse/paml.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/rnaview.py -> ../../../../../share/pyshared/cogent/parse/rnaview.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/flowgram.py -> ../../../../../share/pyshared/cogent/parse/flowgram.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/ebi.py -> ../../../../../share/pyshared/cogent/parse/ebi.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/mothur.py -> ../../../../../share/pyshared/cogent/parse/mothur.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/greengenes.py -> ../../../../../share/pyshared/cogent/parse/greengenes.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/cigar.py -> ../../../../../share/pyshared/cogent/parse/cigar.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/ncbi_taxonomy.py -> 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../../../../../share/pyshared/cogent/parse/gcg.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/parse/cutg.py -> ../../../../../share/pyshared/cogent/parse/cutg.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/sequence_generators.py -> ../../../../../share/pyshared/cogent/seqsim/sequence_generators.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/__init__.py -> ../../../../../share/pyshared/cogent/seqsim/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/birth_death.py -> ../../../../../share/pyshared/cogent/seqsim/birth_death.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/analysis.py -> ../../../../../share/pyshared/cogent/seqsim/analysis.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/tree.py -> ../../../../../share/pyshared/cogent/seqsim/tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/randomization.py -> ../../../../../share/pyshared/cogent/seqsim/randomization.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/microarray.py -> ../../../../../share/pyshared/cogent/seqsim/microarray.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/searchpath.py -> ../../../../../share/pyshared/cogent/seqsim/searchpath.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/markov.py -> ../../../../../share/pyshared/cogent/seqsim/markov.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/microarray_normalize.py -> ../../../../../share/pyshared/cogent/seqsim/microarray_normalize.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/seqsim/usage.py -> ../../../../../share/pyshared/cogent/seqsim/usage.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py -> ../../../../../share/pyshared/cogent/evolve/likelihood_calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py -> ../../../../../share/pyshared/cogent/evolve/bootstrap.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py -> ../../../../../share/pyshared/cogent/evolve/predicate.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py -> ../../../../../share/pyshared/cogent/evolve/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/substitution_model.py -> ../../../../../share/pyshared/cogent/evolve/substitution_model.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/solved_models.py -> ../../../../../share/pyshared/cogent/evolve/solved_models.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py -> ../../../../../share/pyshared/cogent/evolve/likelihood_function.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py -> ../../../../../share/pyshared/cogent/evolve/pairwise_distance.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py -> ../../../../../share/pyshared/cogent/evolve/substitution_calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py -> ../../../../../share/pyshared/cogent/evolve/parameter_controller.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/simulate.py -> ../../../../../share/pyshared/cogent/evolve/simulate.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/coevolution.py -> ../../../../../share/pyshared/cogent/evolve/coevolution.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py -> ../../../../../share/pyshared/cogent/evolve/likelihood_tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/best_likelihood.py -> ../../../../../share/pyshared/cogent/evolve/best_likelihood.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/models.py -> ../../../../../share/pyshared/cogent/evolve/models.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py -> ../../../../../share/pyshared/cogent/evolve/motif_prob_model.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py -> ../../../../../share/pyshared/cogent/evolve/discrete_markov.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py -> ../../../../../../share/pyshared/cogent/db/ensembl/region.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py -> ../../../../../../share/pyshared/cogent/db/ensembl/feature_level.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py -> ../../../../../../share/pyshared/cogent/db/ensembl/database.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py -> ../../../../../../share/pyshared/cogent/db/ensembl/sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py -> ../../../../../../share/pyshared/cogent/db/ensembl/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py -> ../../../../../../share/pyshared/cogent/db/ensembl/name.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py -> ../../../../../../share/pyshared/cogent/db/ensembl/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py -> ../../../../../../share/pyshared/cogent/db/ensembl/compara.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py -> ../../../../../../share/pyshared/cogent/db/ensembl/assembly.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py -> ../../../../../../share/pyshared/cogent/db/ensembl/host.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py -> ../../../../../../share/pyshared/cogent/db/ensembl/related_region.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py -> ../../../../../../share/pyshared/cogent/db/ensembl/species.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py -> ../../../../../../share/pyshared/cogent/db/ensembl/genome.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/__init__.py -> ../../../../../share/pyshared/cogent/db/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/util.py -> ../../../../../share/pyshared/cogent/db/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/ncbi.py -> ../../../../../share/pyshared/cogent/db/ncbi.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/pdb.py -> ../../../../../share/pyshared/cogent/db/pdb.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.7/dist-packages/cogent/db/rfam.py -> ../../../../../share/pyshared/cogent/db/rfam.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/traceback.py -> ../../../../../share/pyshared/cogent/align/traceback.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/algorithm.py -> ../../../../../share/pyshared/cogent/align/algorithm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/dp_calculation.py -> ../../../../../share/pyshared/cogent/align/dp_calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/__init__.py -> ../../../../../share/pyshared/cogent/align/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/pycompare.py -> ../../../../../share/pyshared/cogent/align/pycompare.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/indel_model.py -> ../../../../../share/pyshared/cogent/align/indel_model.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/indel_positions.py -> ../../../../../share/pyshared/cogent/align/indel_positions.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/partial_order_graph.py -> ../../../../../share/pyshared/cogent/align/partial_order_graph.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/progressive.py -> ../../../../../share/pyshared/cogent/align/progressive.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/align.py -> ../../../../../share/pyshared/cogent/align/align.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/pairwise.py -> ../../../../../share/pyshared/cogent/align/pairwise.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/weights/__init__.py -> ../../../../../../share/pyshared/cogent/align/weights/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/weights/util.py -> ../../../../../../share/pyshared/cogent/align/weights/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/align/weights/methods.py -> ../../../../../../share/pyshared/cogent/align/weights/methods.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/__init__.py -> ../../../../share/pyshared/cogent/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/fit_function.py -> ../../../../../share/pyshared/cogent/maths/fit_function.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/svd.py -> ../../../../../share/pyshared/cogent/maths/svd.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/__init__.py -> ../../../../../share/pyshared/cogent/maths/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/solve.py -> ../../../../../share/pyshared/cogent/maths/solve.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/period.py -> ../../../../../share/pyshared/cogent/maths/period.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/unifrac/__init__.py -> ../../../../../../share/pyshared/cogent/maths/unifrac/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/unifrac/fast_unifrac.py -> ../../../../../../share/pyshared/cogent/maths/unifrac/fast_unifrac.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/unifrac/fast_tree.py -> ../../../../../../share/pyshared/cogent/maths/unifrac/fast_tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/optimisers.py -> ../../../../../share/pyshared/cogent/maths/optimisers.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/simannealingoptimiser.py -> ../../../../../share/pyshared/cogent/maths/simannealingoptimiser.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/distance_transform.py -> ../../../../../share/pyshared/cogent/maths/distance_transform.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/matrix_logarithm.py -> ../../../../../share/pyshared/cogent/maths/matrix_logarithm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/matrix/__init__.py -> ../../../../../../share/pyshared/cogent/maths/matrix/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/matrix/distance.py -> 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./usr/lib/python2.6/dist-packages/cogent/maths/stats/cai/util.py -> ../../../../../../../share/pyshared/cogent/maths/stats/cai/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/cai/get_by_cai.py -> ../../../../../../../share/pyshared/cogent/maths/stats/cai/get_by_cai.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/cai/adaptor.py -> ../../../../../../../share/pyshared/cogent/maths/stats/cai/adaptor.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/jackknife.py -> ../../../../../../share/pyshared/cogent/maths/stats/jackknife.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/test.py -> ../../../../../../share/pyshared/cogent/maths/stats/test.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/__init__.py -> ../../../../../../share/pyshared/cogent/maths/stats/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/information_criteria.py -> ../../../../../../share/pyshared/cogent/maths/stats/information_criteria.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/period.py -> ../../../../../../share/pyshared/cogent/maths/stats/period.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/util.py -> ../../../../../../share/pyshared/cogent/maths/stats/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/kendall.py -> ../../../../../../share/pyshared/cogent/maths/stats/kendall.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/ks.py -> ../../../../../../share/pyshared/cogent/maths/stats/ks.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/alpha_diversity.py -> ../../../../../../share/pyshared/cogent/maths/stats/alpha_diversity.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/rarefaction.py -> ../../../../../../share/pyshared/cogent/maths/stats/rarefaction.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/distribution.py -> ../../../../../../share/pyshared/cogent/maths/stats/distribution.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/stats/histogram.py -> ../../../../../../share/pyshared/cogent/maths/stats/histogram.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/spatial/__init__.py -> ../../../../../../share/pyshared/cogent/maths/spatial/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/markov.py -> ../../../../../share/pyshared/cogent/maths/markov.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/scipy_optimize.py -> ../../../../../share/pyshared/cogent/maths/scipy_optimize.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/maths/scipy_optimisers.py -> ../../../../../share/pyshared/cogent/maths/scipy_optimisers.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/text_tree.py -> ../../../../../share/pyshared/cogent/format/text_tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/rna_struct.py -> ../../../../../share/pyshared/cogent/format/rna_struct.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/__init__.py -> ../../../../../share/pyshared/cogent/format/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/phylip.py -> ../../../../../share/pyshared/cogent/format/phylip.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/pdb_color.py -> ../../../../../share/pyshared/cogent/format/pdb_color.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/xyzrn.py -> ../../../../../share/pyshared/cogent/format/xyzrn.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/fasta.py -> ../../../../../share/pyshared/cogent/format/fasta.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/pdb.py -> ../../../../../share/pyshared/cogent/format/pdb.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/structure.py -> ../../../../../share/pyshared/cogent/format/structure.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/mage.py -> ../../../../../share/pyshared/cogent/format/mage.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/stockholm.py -> ../../../../../share/pyshared/cogent/format/stockholm.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/clustal.py -> ../../../../../share/pyshared/cogent/format/clustal.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/table.py -> ../../../../../share/pyshared/cogent/format/table.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/nexus.py -> ../../../../../share/pyshared/cogent/format/nexus.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/motif.py -> ../../../../../share/pyshared/cogent/format/motif.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/format/alignment.py -> ../../../../../share/pyshared/cogent/format/alignment.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/sequence.py -> ../../../../../share/pyshared/cogent/core/sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/__init__.py -> ../../../../../share/pyshared/cogent/core/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/moltype.py -> ../../../../../share/pyshared/cogent/core/moltype.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/alphabet.py -> ../../../../../share/pyshared/cogent/core/alphabet.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/bitvector.py -> ../../../../../share/pyshared/cogent/core/bitvector.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/annotation.py -> ../../../../../share/pyshared/cogent/core/annotation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/profile.py -> ../../../../../share/pyshared/cogent/core/profile.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/tree.py -> ../../../../../share/pyshared/cogent/core/tree.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/location.py -> ../../../../../share/pyshared/cogent/core/location.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/info.py -> ../../../../../share/pyshared/cogent/core/info.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/entity.py -> ../../../../../share/pyshared/cogent/core/entity.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/usage.py -> ../../../../../share/pyshared/cogent/core/usage.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/alignment.py -> ../../../../../share/pyshared/cogent/core/alignment.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/core/genetic_code.py -> ../../../../../share/pyshared/cogent/core/genetic_code.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/least_squares.py -> ../../../../../share/pyshared/cogent/phylo/least_squares.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/tree_collection.py -> ../../../../../share/pyshared/cogent/phylo/tree_collection.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/tree_space.py -> ../../../../../share/pyshared/cogent/phylo/tree_space.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/__init__.py -> ../../../../../share/pyshared/cogent/phylo/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/util.py -> ../../../../../share/pyshared/cogent/phylo/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/maximum_likelihood.py -> ../../../../../share/pyshared/cogent/phylo/maximum_likelihood.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/nj.py -> ../../../../../share/pyshared/cogent/phylo/nj.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/distance.py -> ../../../../../share/pyshared/cogent/phylo/distance.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/phylo/consensus.py -> ../../../../../share/pyshared/cogent/phylo/consensus.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/recalculation/scope.py -> ../../../../../share/pyshared/cogent/recalculation/scope.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/recalculation/__init__.py -> ../../../../../share/pyshared/cogent/recalculation/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/recalculation/definition.py -> ../../../../../share/pyshared/cogent/recalculation/definition.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/recalculation/calculation.py -> ../../../../../share/pyshared/cogent/recalculation/calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/recalculation/setting.py -> ../../../../../share/pyshared/cogent/recalculation/setting.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/motif/__init__.py -> ../../../../../share/pyshared/cogent/motif/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/motif/util.py -> ../../../../../share/pyshared/cogent/motif/util.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/motif/k_word.py -> ../../../../../share/pyshared/cogent/motif/k_word.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/util/organizer.py -> ../../../../../share/pyshared/cogent/util/organizer.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/util/datatypes.py -> ../../../../../share/pyshared/cogent/util/datatypes.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/util/option_parsing.py -> ../../../../../share/pyshared/cogent/util/option_parsing.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/util/transform.py -> ../../../../../share/pyshared/cogent/util/transform.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/util/__init__.py -> ../../../../../share/pyshared/cogent/util/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/lib/python2.6/dist-packages/cogent/util/warning.py -> ../../../../../share/pyshared/cogent/util/warning.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/dict_array.py -> ../../../../../share/pyshared/cogent/util/dict_array.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/recode_alignment.py -> ../../../../../share/pyshared/cogent/util/recode_alignment.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/terminal.py -> ../../../../../share/pyshared/cogent/util/terminal.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/parallel.py -> ../../../../../share/pyshared/cogent/util/parallel.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/update_version.py -> ../../../../../share/pyshared/cogent/util/update_version.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/checkpointing.py -> ../../../../../share/pyshared/cogent/util/checkpointing.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/misc.py -> ../../../../../share/pyshared/cogent/util/misc.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/modules.py -> ../../../../../share/pyshared/cogent/util/modules.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/dict2d.py -> ../../../../../share/pyshared/cogent/util/dict2d.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/trie.py -> ../../../../../share/pyshared/cogent/util/trie.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/table.py -> ../../../../../share/pyshared/cogent/util/table.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/unit_test.py -> ../../../../../share/pyshared/cogent/util/unit_test.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/progress_display.py -> ../../../../../share/pyshared/cogent/util/progress_display.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/util/array.py -> ../../../../../share/pyshared/cogent/util/array.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/cluster/__init__.py -> ../../../../../share/pyshared/cogent/cluster/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/cluster/approximate_mds.py -> ../../../../../share/pyshared/cogent/cluster/approximate_mds.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/cluster/goodness_of_fit.py -> ../../../../../share/pyshared/cogent/cluster/goodness_of_fit.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/cluster/procrustes.py -> ../../../../../share/pyshared/cogent/cluster/procrustes.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/cluster/nmds.py -> ../../../../../share/pyshared/cogent/cluster/nmds.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/cluster/metric_scaling.py -> ../../../../../share/pyshared/cogent/cluster/metric_scaling.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/cluster/UPGMA.py -> ../../../../../share/pyshared/cogent/cluster/UPGMA.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/rna2d.py -> ../../../../../share/pyshared/cogent/struct/rna2d.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/knots.py -> ../../../../../share/pyshared/cogent/struct/knots.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/__init__.py -> ../../../../../share/pyshared/cogent/struct/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/contact.py -> ../../../../../share/pyshared/cogent/struct/contact.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/selection.py -> ../../../../../share/pyshared/cogent/struct/selection.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/annotation.py -> ../../../../../share/pyshared/cogent/struct/annotation.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/asa.py -> ../../../../../share/pyshared/cogent/struct/asa.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/manipulation.py -> ../../../../../share/pyshared/cogent/struct/manipulation.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/dihedral.py -> ../../../../../share/pyshared/cogent/struct/dihedral.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/struct/pairs_util.py -> ../../../../../share/pyshared/cogent/struct/pairs_util.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/arrow_rates.py -> ../../../../../share/pyshared/cogent/draw/arrow_rates.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/__init__.py -> ../../../../../share/pyshared/cogent/draw/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/compatibility.py -> ../../../../../share/pyshared/cogent/draw/compatibility.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/util.py -> ../../../../../share/pyshared/cogent/draw/util.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/dotplot.py -> ../../../../../share/pyshared/cogent/draw/dotplot.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/legend.py -> ../../../../../share/pyshared/cogent/draw/legend.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/dendrogram.py -> ../../../../../share/pyshared/cogent/draw/dendrogram.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/codon_usage.py -> ../../../../../share/pyshared/cogent/draw/codon_usage.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/fancy_arrow.py -> ../../../../../share/pyshared/cogent/draw/fancy_arrow.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/multivariate_plot.py -> ../../../../../share/pyshared/cogent/draw/multivariate_plot.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/rlg2mpl.py -> ../../../../../share/pyshared/cogent/draw/rlg2mpl.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/linear.py -> ../../../../../share/pyshared/cogent/draw/linear.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/draw/dinuc.py -> ../../../../../share/pyshared/cogent/draw/dinuc.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/data/__init__.py -> ../../../../../share/pyshared/cogent/data/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/data/protein_properties.py -> ../../../../../share/pyshared/cogent/data/protein_properties.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/data/energy_params.py -> ../../../../../share/pyshared/cogent/data/energy_params.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/data/molecular_weight.py -> ../../../../../share/pyshared/cogent/data/molecular_weight.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/data/ligand_properties.py -> ../../../../../share/pyshared/cogent/data/ligand_properties.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/data/nucleic_properties.py -> ../../../../../share/pyshared/cogent/data/nucleic_properties.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/dotur.py -> ../../../../../share/pyshared/cogent/app/dotur.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/formatdb.py -> ../../../../../share/pyshared/cogent/app/formatdb.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/raxml.py -> ../../../../../share/pyshared/cogent/app/raxml.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/parameters.py -> ../../../../../share/pyshared/cogent/app/parameters.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/gctmpca.py -> ../../../../../share/pyshared/cogent/app/gctmpca.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/foldalign.py -> ../../../../../share/pyshared/cogent/app/foldalign.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/fasttree.py -> ../../../../../share/pyshared/cogent/app/fasttree.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/__init__.py -> ../../../../../share/pyshared/cogent/app/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/dynalign.py -> ../../../../../share/pyshared/cogent/app/dynalign.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/clearcut.py -> ../../../../../share/pyshared/cogent/app/clearcut.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/uclust.py -> ../../../../../share/pyshared/cogent/app/uclust.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/muscle.py -> ../../../../../share/pyshared/cogent/app/muscle.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/consan.py -> ../../../../../share/pyshared/cogent/app/consan.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/mafft.py -> ../../../../../share/pyshared/cogent/app/mafft.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/util.py -> ../../../../../share/pyshared/cogent/app/util.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/cd_hit.py -> ../../../../../share/pyshared/cogent/app/cd_hit.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/pknotsrg.py -> ../../../../../share/pyshared/cogent/app/pknotsrg.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/sfffile.py -> ../../../../../share/pyshared/cogent/app/sfffile.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/contrafold.py -> ../../../../../share/pyshared/cogent/app/contrafold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/rdp_classifier.py -> ../../../../../share/pyshared/cogent/app/rdp_classifier.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/cove.py -> ../../../../../share/pyshared/cogent/app/cove.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/rnashapes.py -> ../../../../../share/pyshared/cogent/app/rnashapes.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/comrna.py -> ../../../../../share/pyshared/cogent/app/comrna.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/unafold.py -> ../../../../../share/pyshared/cogent/app/unafold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/sfold.py -> ../../../../../share/pyshared/cogent/app/sfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/stride.py -> ../../../../../share/pyshared/cogent/app/stride.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/ilm.py -> ../../../../../share/pyshared/cogent/app/ilm.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/mfold.py -> ../../../../../share/pyshared/cogent/app/mfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/sffinfo.py -> ../../../../../share/pyshared/cogent/app/sffinfo.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/clustalw.py -> ../../../../../share/pyshared/cogent/app/clustalw.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/knetfold.py -> ../../../../../share/pyshared/cogent/app/knetfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/pfold.py -> ../../../../../share/pyshared/cogent/app/pfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/infernal.py -> ../../../../../share/pyshared/cogent/app/infernal.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/cmfinder.py -> ../../../../../share/pyshared/cogent/app/cmfinder.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/rnaforester.py -> ../../../../../share/pyshared/cogent/app/rnaforester.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/msms.py -> ../../../../../share/pyshared/cogent/app/msms.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/dialign.py -> ../../../../../share/pyshared/cogent/app/dialign.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/carnac.py -> ../../../../../share/pyshared/cogent/app/carnac.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/rnaview.py -> ../../../../../share/pyshared/cogent/app/rnaview.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/vienna_package.py -> ../../../../../share/pyshared/cogent/app/vienna_package.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/mothur.py -> ../../../../../share/pyshared/cogent/app/mothur.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/rdp_classifier20.py -> ../../../../../share/pyshared/cogent/app/rdp_classifier20.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/fasttree_v1.py -> ../../../../../share/pyshared/cogent/app/fasttree_v1.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/nupack.py -> ../../../../../share/pyshared/cogent/app/nupack.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/blast.py -> ../../../../../share/pyshared/cogent/app/blast.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/app/rnaalifold.py -> ../../../../../share/pyshared/cogent/app/rnaalifold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/dotur.py -> ../../../../../share/pyshared/cogent/parse/dotur.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/psl.py -> ../../../../../share/pyshared/cogent/parse/psl.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/foldalign.py -> ../../../../../share/pyshared/cogent/parse/foldalign.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/column.py -> ../../../../../share/pyshared/cogent/parse/column.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rna_fold.py -> ../../../../../share/pyshared/cogent/parse/rna_fold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/sequence.py -> ../../../../../share/pyshared/cogent/parse/sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/__init__.py -> ../../../../../share/pyshared/cogent/parse/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/dynalign.py -> ../../../../../share/pyshared/cogent/parse/dynalign.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/macsim.py -> ../../../../../share/pyshared/cogent/parse/macsim.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/gff.py -> ../../../../../share/pyshared/cogent/parse/gff.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/phylip.py -> ../../../../../share/pyshared/cogent/parse/phylip.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/meme.py -> ../../../../../share/pyshared/cogent/parse/meme.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/consan.py -> ../../../../../share/pyshared/cogent/parse/consan.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/pknotsrg.py -> ../../../../../share/pyshared/cogent/parse/pknotsrg.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/locuslink.py -> ../../../../../share/pyshared/cogent/parse/locuslink.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/contrafold.py -> ../../../../../share/pyshared/cogent/parse/contrafold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/cove.py -> ../../../../../share/pyshared/cogent/parse/cove.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rnashapes.py -> ../../../../../share/pyshared/cogent/parse/rnashapes.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/comrna.py -> ../../../../../share/pyshared/cogent/parse/comrna.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/unafold.py -> ../../../../../share/pyshared/cogent/parse/unafold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/sfold.py -> ../../../../../share/pyshared/cogent/parse/sfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/stride.py -> ../../../../../share/pyshared/cogent/parse/stride.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/ilm.py -> ../../../../../share/pyshared/cogent/parse/ilm.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/bowtie.py -> ../../../../../share/pyshared/cogent/parse/bowtie.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/kegg_pos.py -> ../../../../../share/pyshared/cogent/parse/kegg_pos.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/fasta.py -> ../../../../../share/pyshared/cogent/parse/fasta.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/ct.py -> ../../../../../share/pyshared/cogent/parse/ct.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/tinyseq.py -> ../../../../../share/pyshared/cogent/parse/tinyseq.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/pdb.py -> ../../../../../share/pyshared/cogent/parse/pdb.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/flowgram_collection.py -> ../../../../../share/pyshared/cogent/parse/flowgram_collection.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/illumina_sequence.py -> ../../../../../share/pyshared/cogent/parse/illumina_sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/mfold.py -> ../../../../../share/pyshared/cogent/parse/mfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/tree.py -> ../../../../../share/pyshared/cogent/parse/tree.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/gbseq.py -> ../../../../../share/pyshared/cogent/parse/gbseq.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/structure.py -> ../../../../../share/pyshared/cogent/parse/structure.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/cut.py -> ../../../../../share/pyshared/cogent/parse/cut.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/knetfold.py -> ../../../../../share/pyshared/cogent/parse/knetfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rna_plot.py -> ../../../../../share/pyshared/cogent/parse/rna_plot.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/unigene.py -> ../../../../../share/pyshared/cogent/parse/unigene.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/flowgram_parser.py -> ../../../../../share/pyshared/cogent/parse/flowgram_parser.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/mage.py -> ../../../../../share/pyshared/cogent/parse/mage.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/blast_xml.py -> ../../../../../share/pyshared/cogent/parse/blast_xml.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/pfold.py -> ../../../../../share/pyshared/cogent/parse/pfold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/genbank.py -> ../../../../../share/pyshared/cogent/parse/genbank.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/tree_xml.py -> ../../../../../share/pyshared/cogent/parse/tree_xml.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/record.py -> ../../../../../share/pyshared/cogent/parse/record.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/fastq.py -> ../../../../../share/pyshared/cogent/parse/fastq.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/bpseq.py -> ../../../../../share/pyshared/cogent/parse/bpseq.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/sprinzl.py -> ../../../../../share/pyshared/cogent/parse/sprinzl.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rfam.py -> ../../../../../share/pyshared/cogent/parse/rfam.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/stockholm.py -> ../../../../../share/pyshared/cogent/parse/stockholm.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/gibbs.py -> ../../../../../share/pyshared/cogent/parse/gibbs.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/clustal.py -> ../../../../../share/pyshared/cogent/parse/clustal.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/newick.py -> ../../../../../share/pyshared/cogent/parse/newick.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/record_finder.py -> ../../../../../share/pyshared/cogent/parse/record_finder.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/table.py -> ../../../../../share/pyshared/cogent/parse/table.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rdb.py -> ../../../../../share/pyshared/cogent/parse/rdb.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/kegg_fasta.py -> ../../../../../share/pyshared/cogent/parse/kegg_fasta.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/infernal.py -> ../../../../../share/pyshared/cogent/parse/infernal.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/cmfinder.py -> ../../../../../share/pyshared/cogent/parse/cmfinder.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rnaforester.py -> ../../../../../share/pyshared/cogent/parse/rnaforester.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/binary_sff.py -> ../../../../../share/pyshared/cogent/parse/binary_sff.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/msms.py -> ../../../../../share/pyshared/cogent/parse/msms.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/dialign.py -> ../../../../../share/pyshared/cogent/parse/dialign.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/aaindex.py -> ../../../../../share/pyshared/cogent/parse/aaindex.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/agilent_microarray.py -> ../../../../../share/pyshared/cogent/parse/agilent_microarray.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/nexus.py -> ../../../../../share/pyshared/cogent/parse/nexus.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/carnac.py -> ../../../../../share/pyshared/cogent/parse/carnac.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/kegg_ko.py -> ../../../../../share/pyshared/cogent/parse/kegg_ko.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/paml.py -> ../../../../../share/pyshared/cogent/parse/paml.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rnaview.py -> ../../../../../share/pyshared/cogent/parse/rnaview.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/flowgram.py -> ../../../../../share/pyshared/cogent/parse/flowgram.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/ebi.py -> ../../../../../share/pyshared/cogent/parse/ebi.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/mothur.py -> ../../../../../share/pyshared/cogent/parse/mothur.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/greengenes.py -> ../../../../../share/pyshared/cogent/parse/greengenes.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/cigar.py -> ../../../../../share/pyshared/cogent/parse/cigar.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/ncbi_taxonomy.py -> ../../../../../share/pyshared/cogent/parse/ncbi_taxonomy.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/nupack.py -> ../../../../../share/pyshared/cogent/parse/nupack.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/blast.py -> ../../../../../share/pyshared/cogent/parse/blast.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/kegg_taxonomy.py -> ../../../../../share/pyshared/cogent/parse/kegg_taxonomy.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/paml_matrix.py -> ../../../../../share/pyshared/cogent/parse/paml_matrix.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/rnaalifold.py -> ../../../../../share/pyshared/cogent/parse/rnaalifold.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/gcg.py -> ../../../../../share/pyshared/cogent/parse/gcg.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/parse/cutg.py -> ../../../../../share/pyshared/cogent/parse/cutg.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/sequence_generators.py -> ../../../../../share/pyshared/cogent/seqsim/sequence_generators.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/__init__.py -> ../../../../../share/pyshared/cogent/seqsim/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/birth_death.py -> ../../../../../share/pyshared/cogent/seqsim/birth_death.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/analysis.py -> ../../../../../share/pyshared/cogent/seqsim/analysis.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/tree.py -> ../../../../../share/pyshared/cogent/seqsim/tree.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/randomization.py -> ../../../../../share/pyshared/cogent/seqsim/randomization.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/microarray.py -> ../../../../../share/pyshared/cogent/seqsim/microarray.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/searchpath.py -> ../../../../../share/pyshared/cogent/seqsim/searchpath.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/markov.py -> ../../../../../share/pyshared/cogent/seqsim/markov.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/microarray_normalize.py -> ../../../../../share/pyshared/cogent/seqsim/microarray_normalize.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/seqsim/usage.py -> ../../../../../share/pyshared/cogent/seqsim/usage.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/likelihood_calculation.py -> ../../../../../share/pyshared/cogent/evolve/likelihood_calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/bootstrap.py -> ../../../../../share/pyshared/cogent/evolve/bootstrap.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/predicate.py -> ../../../../../share/pyshared/cogent/evolve/predicate.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/__init__.py -> ../../../../../share/pyshared/cogent/evolve/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/substitution_model.py -> ../../../../../share/pyshared/cogent/evolve/substitution_model.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/solved_models.py -> ../../../../../share/pyshared/cogent/evolve/solved_models.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/likelihood_function.py -> ../../../../../share/pyshared/cogent/evolve/likelihood_function.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/pairwise_distance.py -> ../../../../../share/pyshared/cogent/evolve/pairwise_distance.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/substitution_calculation.py -> ../../../../../share/pyshared/cogent/evolve/substitution_calculation.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/parameter_controller.py -> ../../../../../share/pyshared/cogent/evolve/parameter_controller.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/simulate.py -> ../../../../../share/pyshared/cogent/evolve/simulate.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/coevolution.py -> ../../../../../share/pyshared/cogent/evolve/coevolution.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/likelihood_tree.py -> ../../../../../share/pyshared/cogent/evolve/likelihood_tree.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/best_likelihood.py -> ../../../../../share/pyshared/cogent/evolve/best_likelihood.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/models.py -> ../../../../../share/pyshared/cogent/evolve/models.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/motif_prob_model.py -> ../../../../../share/pyshared/cogent/evolve/motif_prob_model.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/evolve/discrete_markov.py -> ../../../../../share/pyshared/cogent/evolve/discrete_markov.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/region.py -> ../../../../../../share/pyshared/cogent/db/ensembl/region.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/feature_level.py -> ../../../../../../share/pyshared/cogent/db/ensembl/feature_level.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/database.py -> ../../../../../../share/pyshared/cogent/db/ensembl/database.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/sequence.py -> ../../../../../../share/pyshared/cogent/db/ensembl/sequence.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/__init__.py -> ../../../../../../share/pyshared/cogent/db/ensembl/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/name.py -> ../../../../../../share/pyshared/cogent/db/ensembl/name.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/util.py -> ../../../../../../share/pyshared/cogent/db/ensembl/util.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/compara.py -> ../../../../../../share/pyshared/cogent/db/ensembl/compara.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/assembly.py -> ../../../../../../share/pyshared/cogent/db/ensembl/assembly.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/host.py -> ../../../../../../share/pyshared/cogent/db/ensembl/host.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/related_region.py -> ../../../../../../share/pyshared/cogent/db/ensembl/related_region.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/species.py -> ../../../../../../share/pyshared/cogent/db/ensembl/species.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ensembl/genome.py -> ../../../../../../share/pyshared/cogent/db/ensembl/genome.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/__init__.py -> ../../../../../share/pyshared/cogent/db/__init__.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/util.py -> ../../../../../share/pyshared/cogent/db/util.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/ncbi.py -> ../../../../../share/pyshared/cogent/db/ncbi.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/pdb.py -> ../../../../../share/pyshared/cogent/db/pdb.py lrwxrwxrwx root/root 0 2012-05-09 03:09 ./usr/lib/python2.6/dist-packages/cogent/db/rfam.py -> ../../../../../share/pyshared/cogent/db/rfam.py lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/share/doc/python-cogent/html/_static/underscore.js -> ../../../../javascript/underscore/underscore.js lrwxrwxrwx root/root 0 2012-05-09 03:10 ./usr/share/doc/python-cogent/html/_static/jquery.js -> ../../../../javascript/jquery/jquery.js python-cogent-dbg_1.5.1-2_armhf.deb ─────────────────────────────────── new debian package, version 2.0. size 713274 bytes: control archive= 1180 bytes. 449 bytes, 13 lines control 2421 bytes, 23 lines md5sums Package: python-cogent-dbg Source: python-cogent Version: 1.5.1-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1832 Depends: python-cogent (= 1.5.1-2) Section: debug Priority: extra Homepage: http://pycogent.sourceforge.net/ Description: debug information for pycogent This package is needed to improve significantly the bug reports that users may feel inclined to send. drwxr-xr-x root/root 0 2012-05-09 03:09 ./ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/debug/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/debug/usr/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/debug/usr/lib/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/debug/usr/lib/python2.7/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/debug/usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/debug/usr/lib/python2.7/dist-packages/cogent/ drwxr-xr-x root/root 0 2012-05-09 03:10 ./usr/lib/debug/usr/lib/python2.7/dist-packages/cogent/align/ -rw-r--r-- root/root 105840 2012-05-09 03:10 ./usr/lib/debug/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_seqs.so -rw-r--r-- root/root 41775 2012-05-09 03:10 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┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* cython* debhelper* docutils-common* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libblas3gf* libcroco3* libdb4.8* libexpat1* libexpat1-dev* libffi5* libgfortran3* libglib2.0-0* libjs-jquery* libjs-sphinxdoc* libjs-underscore* liblapack3gf* libmagic1* libpcre3* libpipeline1* libpython2.6* libpython2.7* libsqlite3-0* libssl-dev* libssl1.0.0* libunistring0* libxml2* man-db* mime-support* po-debconf* python* python-all* python-all-dev* python-dev* python-docutils* python-jinja2* python-markupsafe* python-minimal* python-numpy* python-pygments* python-roman* python-sphinx* python-support* python2.6* python2.6-dev* python2.6-minimal* python2.7* python2.7-dev* python2.7-minimal* sbuild-build-depends-core-dummy* sbuild-build-depends-python-cogent-dummy* sgml-base* sphinx-common* xml-core* zlib1g-dev* 0 upgraded, 0 newly installed, 60 to remove and 8 not upgraded. After this operation, 147 MB disk space will be freed. (Reading database ... 16040 files and directories currently installed.) Removing sbuild-build-depends-python-cogent-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing cython ... Removing python-sphinx ... Removing python-docutils ... Removing docutils-common ... Purging configuration files for docutils-common ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing python-numpy ... Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing python-all-dev ... Removing python2.6-dev ... Removing python-pygments ... Purging configuration files for python-pygments ... Removing python-jinja2 ... Removing python-markupsafe ... Removing python-all ... Removing libpython2.6 ... Purging configuration files for libpython2.6 ... Removing python2.6 ... Purging configuration files for python2.6 ... Removing libdb4.8:armhf ... Removing python-dev ... Removing python2.7-dev ... Removing python-roman ... Removing python-support ... Purging configuration files for python-support ... Removing python ... Purging configuration files for python ... Removing libpython2.7 ... Purging configuration files for libpython2.7 ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing libexpat1-dev ... Removing libexpat1:armhf ... Purging configuration files for libexpat1:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libgfortran3:armhf ... Purging configuration files for libgfortran3:armhf ... Removing sphinx-common ... Removing libjs-sphinxdoc ... Removing libjs-jquery ... Removing libjs-underscore ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libsqlite3-0:armhf ... Purging configuration files for libsqlite3-0:armhf ... Removing libssl-dev ... Removing python-minimal ... Removing python2.7-minimal ... Purging configuration files for python2.7-minimal ... Removing python2.6-minimal ... Purging configuration files for python2.6-minimal ... Removing libssl1.0.0:armhf ... Purging configuration files for libssl1.0.0:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing mime-support ... Purging configuration files for mime-support ... Removing sbuild-build-depends-core-dummy ... Removing xml-core ... Purging configuration files for xml-core ... dpkg: warning: while removing xml-core, directory '/etc/sgml' not empty so not removed. Removing sgml-base ... Purging configuration files for sgml-base ... Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 66560 Build-Time: 536 Distribution: testing Install-Time: 200 Job: python-cogent_1.5.1-2 Package: python-cogent Package-Time: 754 Source-Version: 1.5.1-2 Space: 66560 Status: successful Version: 1.5.1-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120509-0310 Build needed 00:12:34, 66560k disc space