sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build02.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ncbi-tools6 6.1.20120620-2 (armhf) 05 Jul 2012 00:16 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ncbi-tools6 Version: 6.1.20120620-2 Source Version: 6.1.20120620-2 Distribution: testing Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf W: line 7 [testing-armhf-sbuild]: Deprecated key ‘script-config’ used I: This option will be removed in the future; please update your configuration I: NOTICE: Log filtering will replace 'build/ncbi-tools6-LfKVu_/ncbi-tools6-6.1.20120620' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ncbi-tools6-LfKVu_' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-ac593a0a-a260-440b-9499-7de83741c4fd' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'ncbi-tools6' packaging is maintained in the 'Git' version control system at: git://anonscm.debian.org/debian-med/ncbi-tools6.git Need to get 68.6 MB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main ncbi-tools6 6.1.20120620-2 (dsc) [2637 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main ncbi-tools6 6.1.20120620-2 (tar) [68.4 MB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main ncbi-tools6 6.1.20120620-2 (diff) [138 kB] Fetched 68.6 MB in 22s (3085 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-VsHfAe/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10635 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), csh | c-shell, debhelper (>= 9), lesstif2-dev, libglu1-mesa-dev | libglu-dev, libpcre3-dev, libpng-dev, libxmu-dev Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), csh, debhelper (>= 9), lesstif2-dev, libglu1-mesa-dev, libpcre3-dev, libpng-dev, libxmu-dev dpkg-deb: building package `sbuild-build-depends-ncbi-tools6-dummy' in `/«BUILDDIR»/resolver-M4XIm3/apt_archive/sbuild-build-depends-ncbi-tools6-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ncbi-tools6 build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils csh debhelper file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libasprintf0c2 libbsd0 libcroco3 libdrm2 libexpat1 libexpat1-dev libffi5 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice-dev libice6 libmagic1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpng12-0 libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxmu-dev libxmu-headers libxmu6 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 man-db mesa-common-dev pkg-config po-debconf ttf-dejavu-core x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libice-doc libsm-doc libxcb-doc libxext-doc libxt-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libgl1-mesa-dri libglib2.0-data shared-mime-info libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils csh debhelper file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libasprintf0c2 libbsd0 libcroco3 libdrm2 libexpat1 libexpat1-dev libffi5 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice-dev libice6 libmagic1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpng12-0 libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxmu-dev libxmu-headers libxmu6 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 man-db mesa-common-dev pkg-config po-debconf sbuild-build-depends-ncbi-tools6-dummy ttf-dejavu-core x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 14.4 MB/24.2 MB of archives. After this operation, 62.0 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main libbsd0 armhf 0.4.0-1 [56.2 kB] Get:2 http://repo.raspbian.lan/raspbian/ testing/main libdrm2 armhf 2.4.33-3 [440 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main libexpat1 armhf 2.1.0-1 [117 kB] Get:4 http://repo.raspbian.lan/raspbian/ testing/main libfreetype6 armhf 2.4.9-1 [402 kB] Get:5 http://repo.raspbian.lan/raspbian/ testing/main ttf-dejavu-core all 2.33-2 [1552 kB] Get:6 http://repo.raspbian.lan/raspbian/ testing/main fontconfig-config all 2.9.0-6 [232 kB] Get:7 http://repo.raspbian.lan/raspbian/ testing/main libfontconfig1 armhf 2.9.0-6 [285 kB] Get:8 http://repo.raspbian.lan/raspbian/ testing/main libglapi-mesa armhf 8.0.3-1 [64.5 kB] Get:9 http://repo.raspbian.lan/raspbian/ testing/main libxau6 armhf 1:1.0.7-1 [17.6 kB] Get:10 http://repo.raspbian.lan/raspbian/ testing/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB] Get:11 http://repo.raspbian.lan/raspbian/ testing/main libxcb1 armhf 1.8.1-1 [42.5 kB] Get:12 http://repo.raspbian.lan/raspbian/ testing/main libx11-data all 2:1.5.0-1 [189 kB] Get:13 http://repo.raspbian.lan/raspbian/ testing/main libx11-6 armhf 2:1.5.0-1 [836 kB] Get:14 http://repo.raspbian.lan/raspbian/ testing/main libx11-xcb1 armhf 2:1.5.0-1 [139 kB] Get:15 http://repo.raspbian.lan/raspbian/ testing/main libxcb-glx0 armhf 1.8.1-1 [26.9 kB] Get:16 http://repo.raspbian.lan/raspbian/ testing/main libxdamage1 armhf 1:1.1.3-2 [13.8 kB] Get:17 http://repo.raspbian.lan/raspbian/ testing/main libxext6 armhf 2:1.3.1-2 [49.7 kB] Get:18 http://repo.raspbian.lan/raspbian/ testing/main libxfixes3 armhf 1:5.0-4 [19.8 kB] Get:19 http://repo.raspbian.lan/raspbian/ testing/main libxxf86vm1 armhf 1:1.1.2-1 [18.4 kB] Get:20 http://repo.raspbian.lan/raspbian/ testing/main libgl1-mesa-glx armhf 8.0.3-1 [157 kB] Get:21 http://repo.raspbian.lan/raspbian/ testing/main libglu1-mesa armhf 8.0.3-1 [190 kB] Get:22 http://repo.raspbian.lan/raspbian/ testing/main x11-common all 1:7.6+13 [278 kB] Get:23 http://repo.raspbian.lan/raspbian/ testing/main libice6 armhf 2:1.0.8-2 [56.2 kB] Get:24 http://repo.raspbian.lan/raspbian/ testing/main libpcrecpp0 armhf 1:8.30-5 [124 kB] Get:25 http://repo.raspbian.lan/raspbian/ testing/main libpng12-0 armhf 1.2.49-1 [179 kB] Get:26 http://repo.raspbian.lan/raspbian/ testing/main libsm6 armhf 2:1.2.1-2 [32.5 kB] Get:27 http://repo.raspbian.lan/raspbian/ testing/main libxrender1 armhf 1:0.9.7-1 [29.9 kB] Get:28 http://repo.raspbian.lan/raspbian/ testing/main libxft2 armhf 2.3.1-1 [55.4 kB] Get:29 http://repo.raspbian.lan/raspbian/ testing/main libxt6 armhf 1:1.1.3-1 [181 kB] Get:30 http://repo.raspbian.lan/raspbian/ testing/main libxmu6 armhf 2:1.1.1-1 [59.1 kB] Get:31 http://repo.raspbian.lan/raspbian/ testing/main libxp6 armhf 1:1.0.1-2 [21.1 kB] Get:32 http://repo.raspbian.lan/raspbian/ testing/main csh armhf 20110502-2 [236 kB] Get:33 http://repo.raspbian.lan/raspbian/ testing/main lesstif2 armhf 1:0.95.2-1 [595 kB] Get:34 http://repo.raspbian.lan/raspbian/ testing/main xorg-sgml-doctools all 1:1.10-1 [24.1 kB] Get:35 http://repo.raspbian.lan/raspbian/ testing/main x11proto-core-dev all 7.0.23-1 [774 kB] Get:36 http://repo.raspbian.lan/raspbian/ testing/main libice-dev armhf 2:1.0.8-2 [65.9 kB] Get:37 http://repo.raspbian.lan/raspbian/ testing/main libsm-dev armhf 2:1.2.1-2 [35.6 kB] Get:38 http://repo.raspbian.lan/raspbian/ testing/main libxau-dev armhf 1:1.0.7-1 [21.0 kB] Get:39 http://repo.raspbian.lan/raspbian/ testing/main libxdmcp-dev armhf 1:1.1.1-1 [40.8 kB] Get:40 http://repo.raspbian.lan/raspbian/ testing/main x11proto-input-dev all 2.2-1 [172 kB] Get:41 http://repo.raspbian.lan/raspbian/ testing/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:42 http://repo.raspbian.lan/raspbian/ testing/main xtrans-dev all 1.2.7-1 [112 kB] Get:43 http://repo.raspbian.lan/raspbian/ testing/main libpthread-stubs0 armhf 0.3-3 [3230 B] Get:44 http://repo.raspbian.lan/raspbian/ testing/main libpthread-stubs0-dev armhf 0.3-3 [3996 B] Get:45 http://repo.raspbian.lan/raspbian/ testing/main libxcb1-dev armhf 1.8.1-1 [82.1 kB] Get:46 http://repo.raspbian.lan/raspbian/ testing/main libx11-dev armhf 2:1.5.0-1 [956 kB] Get:47 http://repo.raspbian.lan/raspbian/ testing/main x11proto-xext-dev all 7.2.1-1 [273 kB] Get:48 http://repo.raspbian.lan/raspbian/ testing/main libxext-dev armhf 2:1.3.1-2 [111 kB] Get:49 http://repo.raspbian.lan/raspbian/ testing/main x11proto-print-dev all 1.0.5-2 [14.9 kB] Get:50 http://repo.raspbian.lan/raspbian/ testing/main libxp-dev armhf 1:1.0.1-2 [87.6 kB] Get:51 http://repo.raspbian.lan/raspbian/ testing/main libxt-dev armhf 1:1.1.3-1 [477 kB] Get:52 http://repo.raspbian.lan/raspbian/ testing/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB] Get:53 http://repo.raspbian.lan/raspbian/ testing/main libxrender-dev armhf 1:0.9.7-1 [38.8 kB] Get:54 http://repo.raspbian.lan/raspbian/ testing/main libexpat1-dev armhf 2.1.0-1 [210 kB] Get:55 http://repo.raspbian.lan/raspbian/ testing/main libfreetype6-dev armhf 2.4.9-1 [750 kB] Get:56 http://repo.raspbian.lan/raspbian/ testing/main libfontconfig1-dev armhf 2.9.0-6 [842 kB] Get:57 http://repo.raspbian.lan/raspbian/ testing/main libxft-dev armhf 2.3.1-1 [68.1 kB] Get:58 http://repo.raspbian.lan/raspbian/ testing/main lesstif2-dev armhf 1:0.95.2-1 [838 kB] Get:59 http://repo.raspbian.lan/raspbian/ testing/main mesa-common-dev armhf 8.0.3-1 [363 kB] Get:60 http://repo.raspbian.lan/raspbian/ testing/main libgl1-mesa-dev armhf 8.0.3-1 [32.8 kB] Get:61 http://repo.raspbian.lan/raspbian/ testing/main libglu1-mesa-dev armhf 8.0.3-1 [264 kB] Get:62 http://repo.raspbian.lan/raspbian/ testing/main libpcre3-dev armhf 1:8.30-5 [343 kB] Get:63 http://repo.raspbian.lan/raspbian/ testing/main libpng12-dev armhf 1.2.49-1 [259 kB] Get:64 http://repo.raspbian.lan/raspbian/ testing/main libxmu-headers all 2:1.1.1-1 [77.8 kB] Get:65 http://repo.raspbian.lan/raspbian/ testing/main libxmu-dev armhf 2:1.1.1-1 [64.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.4 MB in 7s (1818 kB/s) Selecting previously unselected package libpcre3:armhf. 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Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libpopt0:armhf (1.16-7) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.8.0+dfsg1-4) ... Setting up libbsd0:armhf (0.4.0-1) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdrm2:armhf (2.4.33-3) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-6) ... Setting up libfontconfig1:armhf (2.9.0-6) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libglapi-mesa:armhf (8.0.3-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... 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Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up csh (20110502-2) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libice-dev:armhf (2:1.0.8-2) ... Setting up libsm-dev:armhf (2:1.2.1-2) ... Setting up libxau-dev:armhf (1:1.0.7-1) ... 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Setting up sbuild-build-depends-ncbi-tools6-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-8+rpi1 gcc-4.6_4.6.3-8+rpi1 libc6-dev_2.13-33 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-8+rpi1 csh_20110502-2 dash_0.5.7-3 debconf_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 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libgc1c2_1:7.1-8 libgcc1_1:4.7.1-2+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgl1-mesa-dev_8.0.3-1 libgl1-mesa-glx_8.0.3-1 libglapi-mesa_8.0.3-1 libglib2.0-0_2.32.3-1 libglu1-mesa_8.0.3-1 libglu1-mesa-dev_8.0.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-2+rpi1 libice-dev_2:1.0.8-2 libice6_2:1.0.8-2 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libncursesw5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libpopt0_1.16-7 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-10 libsm-dev_2:1.2.1-2 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libx11-dev_2:1.5.0-1 libx11-xcb1_2:1.5.0-1 libxau-dev_1:1.0.7-1 libxau6_1:1.0.7-1 libxcb-glx0_1.8.1-1 libxcb1_1.8.1-1 libxcb1-dev_1.8.1-1 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.1-2 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxft-dev_2.3.1-1 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-4 libxmu-dev_2:1.1.1-1 libxmu-headers_2:1.1.1-1 libxmu6_2:1.1.1-1 libxp-dev_1:1.0.1-2 libxp6_1:1.0.1-2 libxrender-dev_1:0.9.7-1 libxrender1_1:0.9.7-1 libxt-dev_1:1.1.3-1 libxt6_1:1.1.3-1 libxxf86vm1_1:1.1.2-1 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mesa-common-dev_8.0.3-1 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12+rpi1 perl-base_5.14.2-12+rpi1 perl-modules_5.14.2-12+rpi1 pkg-config_0.26-1 po-debconf_1.0.16+nmu2 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-tools6-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.1 x11-common_1:7.6+13 x11proto-core-dev_7.0.23-1 x11proto-input-dev_2.2-1 x11proto-kb-dev_1.0.6-2 x11proto-print-dev_1.0.5-2 x11proto-render-dev_2:0.11.1-2 x11proto-xext-dev_7.2.1-1 xorg-sgml-doctools_1:1.10-1 xtrans-dev_1.2.7-1 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon Jun 25 03:09:05 2012 UTC using RSA key ID F14A64A2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20120620-2.dsc dpkg-source: info: extracting ncbi-tools6 in ncbi-tools6-6.1.20120620 dpkg-source: info: unpacking ncbi-tools6_6.1.20120620.orig.tar.gz dpkg-source: info: applying ncbi-tools6_6.1.20120620-2.diff.gz dpkg-source: info: upstream files that have been modified: ncbi-tools6-6.1.20120620/api/alignmgr2.c ncbi-tools6-6.1.20120620/api/aliread.c ncbi-tools6-6.1.20120620/api/pgppop.c ncbi-tools6-6.1.20120620/api/txalign.c ncbi-tools6-6.1.20120620/corelib/ncbienv.c ncbi-tools6-6.1.20120620/corelib/ncbimain.c ncbi-tools6-6.1.20120620/desktop/bspview.c ncbi-tools6-6.1.20120620/desktop/ingenwin.c ncbi-tools6-6.1.20120620/desktop/seqpanel.c ncbi-tools6-6.1.20120620/doc/firewall.html ncbi-tools6-6.1.20120620/doc/fwd_check.sh ncbi-tools6-6.1.20120620/doc/man/Psequin.1 ncbi-tools6-6.1.20120620/doc/man/asn2all.1 ncbi-tools6-6.1.20120620/doc/man/asn2fsa.1 ncbi-tools6-6.1.20120620/doc/man/asn2gb.1 ncbi-tools6-6.1.20120620/doc/man/asndisc.1 ncbi-tools6-6.1.20120620/doc/man/asnmacro.1 ncbi-tools6-6.1.20120620/doc/man/asntool.1 ncbi-tools6-6.1.20120620/doc/man/asnval.1 ncbi-tools6-6.1.20120620/doc/man/blast.1 ncbi-tools6-6.1.20120620/doc/man/blast2.1 ncbi-tools6-6.1.20120620/doc/man/cleanasn.1 ncbi-tools6-6.1.20120620/doc/man/idfetch.1 ncbi-tools6-6.1.20120620/doc/man/nps2gps.1 ncbi-tools6-6.1.20120620/doc/man/tbl2asn.1 ncbi-tools6-6.1.20120620/make/makeall.unx ncbi-tools6-6.1.20120620/make/makedemo.unx ncbi-tools6-6.1.20120620/make/makenet.unx ncbi-tools6-6.1.20120620/make/makeshlb.unx ncbi-tools6-6.1.20120620/tools/readdb.c ncbi-tools6-6.1.20120620/tools/spidey.c ncbi-tools6-6.1.20120620/vibrant/netscape.c ncbi-tools6-6.1.20120620/vibrant/shim3d.c ncbi-tools6-6.1.20120620/vibrant/vibmain.c ncbi-tools6-6.1.20120620/vibrant/vibwndws.c Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_ALIAS_NAME=chroot:testing-armhf-sbuild SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-ac593a0a-a260-440b-9499-7de83741c4fd SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package ncbi-tools6 dpkg-buildpackage: source version 6.1.20120620-2 dpkg-source --before-build ncbi-tools6-6.1.20120620 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' rm -rf build/* bin/* include/* lib/* shlib mkdir -p build bin include lib rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' cd build && ln -s ../make/*.unx . ln -s ../make/ln-if-absent build mv build/makeall.unx build/makefile chmod +x debian/makemenu debian/installman /usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG" \ LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a make[2]: Entering directory `/«PKGBUILDDIR»/build' chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithr.c ncbithr.c: In function 's_TlsDestroyAll': ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable] cp -p ncbithr.o ../lib gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimain.c ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbibs.c ncbibs.c: In function 'Nlm_BSMerge': ncbibs.c:106:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSAdd': ncbibs.c:210:4: warning: statement with no effect [-Wunused-value] ncbibs.c:222:4: warning: statement with no effect [-Wunused-value] ncbibs.c:223:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSDelete': ncbibs.c:336:4: warning: statement with no effect [-Wunused-value] ncbibs.c:341:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSWrite': ncbibs.c:594:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSRead': ncbibs.c:658:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSGetByte': ncbibs.c:702:2: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wwwutils.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbierr.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: In function 'strncat', inlined from 'ErrMsgRoot_fopen' at ncbierr.c:955:20: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbienv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbifile.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiprop.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimath.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimem.c ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default] /usr/include/features.h:292:0: note: this is the location of the previous definition gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimisc.c ncbimisc.c: In function 'MergeStringArray': ncbimisc.c:1269:22: warning: 'return' with no value, in function returning non-void [-Wreturn-type] ncbimisc.c: In function 'XmlPathSuffixIs': ncbimisc.c:2947:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimsg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbistr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisgml.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ncbisgml.c:80: In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:265:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:284:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:340:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:354:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbitime.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbilang.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnbufo.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asndebin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnenbin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngen.c asngen.c: In function 'AsnFindNthPieceOfObject': asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnio.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlex.c asnlex.c:1322:13: warning: 'AsnLexWordUTF8' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlext.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnout.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnprint.c asnprint.c: In function 'GetXMLModuleName': asnprint.c:102:2: warning: statement with no effect [-Wunused-value] asnprint.c: In function 'AsnPrintCloseStruct': asnprint.c:1771:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable] asnprint.c: In function 'AsnPrintModuleXMLInc': asnprint.c:2092:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asntypes.c asntypes.c: In function 'AsnTreeLoad': asntypes.c:1274:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1288:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1301:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1333:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngenob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gifgen.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF togif.c togif.c: In function 'gdImageCreateFromGif': togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable] togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable] togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable] gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithrs.c ncbithrs.c: In function 's_TlsDestroyAll': ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function 're_match_2': regex.c:3768:19: warning: unused variable 'destination' [-Wunused-variable] regex.c:3915:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:3968:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable] regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable] regex.c:4107:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4120:11: warning: unused variable 'destination' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tsprintf.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiargs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tree.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c ncbi_socket.c: In function 's_GetLocalPort': ncbi_socket.c:386:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_IsConnected': ncbi_socket.c:2435:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:190:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'TRIGGER_Create': ncbi_socket.c:4002:18: warning: unused variable 'x_id' [-Wunused-variable] ncbi_socket.c: In function 's_CreateListening': ncbi_socket.c:4454:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_Accept': ncbi_socket.c:4722:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:214:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_CreateOnTop': ncbi_socket.c:5174:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:133:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c:5210:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'DSOCK_Bind': ncbi_socket.c:6609:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'DSOCK_RecvMsg': ncbi_socket.c:7002:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/bits/socket2.h:65:1: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_types.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_version.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_local.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urlquery.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF binary.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn_connection.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnflpt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnfspc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnmfls.c rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o cp -p libncbi.a ../lib ranlib ../lib/libncbi.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objacces.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalign.c objalign.c: In function 'CommonSeqAlignLabelFunc': objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegAsnRead': objalign.c:2169:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegAsnRead': objalign.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonAsnRead': objalign.c:2600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegModifierFree': objalign.c:2858:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProductPosFree': objalign.c:3031:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkFree': objalign.c:3204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SpliceSiteAsnRead': objalign.c:3446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProtPosAsnRead': objalign.c:3600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseAlignAsnRead': objalign.c:3769:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegExtAsnRead': objalign.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkAsnRead': objalign.c:3305:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objalign.c: In function 'SplicedSegModifierAsnRead': objalign.c:2938:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objall.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objbibli.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfeat.c objfeat.c: In function 'ModelEvidenceSupportAsnRead': objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExperimentSupportAsnRead': objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ProgramIdAsnRead': objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'EvidenceBasisAsnRead': objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'InferenceSupportAsnRead': objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ModelEvidenceItemAsnRead': objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SeqFeatSupportAsnRead': objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualAsnRead': objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualSetAsnRead': objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAGenAsnRead': objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'GeneNomenclatureAsnRead': objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerAsnRead': objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerSetAsnRead': objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionAsnRead': objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionSetAsnRead': objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneRefAsnRead': objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqSetAsnRead': objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqAsnRead': objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginAsnRead': objfeat.c:9393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginConditionAsnRead': objfeat.c:9472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationRefAsnRead': objfeat.c:9551:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ConsequenceAsnWrite': objfeat.c:10112:12: warning: variable 'av' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead': objfeat.c:10572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_frameshiftAsnRead': objfeat.c:10650:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataFree': objfeat.c:10750:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataSetAsnRead': objfeat.c:10803:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementFree': objfeat.c:10997:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationInstAsnRead': objfeat.c:11126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: At top level: objfeat.c:11275:1: warning: "/*" within comment [-Wcomment] objfeat.c: In function 'VariantPropertiesAsnRead': objfeat.c:11304:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PhenotypeAsnRead': objfeat.c:11625:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PopulationDataAsnRead': objfeat.c:11821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExtLocAsnRead': objfeat.c:12034:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Seq_seqFree': objfeat.c:12199:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'DeltaItemAsnRead': objfeat.c:12232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementAsnRead': objfeat.c:10539:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'CodeBreakAsnWrite': objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'VarRefDataAsnRead': objfeat.c:10965:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgen.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objloc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmedli.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpub.c objpub.c: In function 'PubLabelUnique': objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable] objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable] objpub.c: In function 'PubSetAsnRead': objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wuninitialized] objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objres.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objscoremat.c objscoremat.c: In function 'PssmAsnRead': objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmIntermediateDataAsnRead': objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmFinalDataAsnRead': objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmParametersAsnRead': objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmWithParametersAsnRead': objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'BlockPropertyAsnRead': objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreBlockAsnRead': objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'LoopConstraintAsnRead': objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreDefAsnRead': objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'FormatRpsDbParametersAsnRead': objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objseq.c objseq.c: In function 'LinkageEvidenceAsnRead': objseq.c:1603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqGapAsnRead': objseq.c:1755:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescrAsnWriteExtra': objseq.c:2023:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescAsnRead': objseq.c:2446:28: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objseq.c: In function 'BioseqAsnRead': objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objblock.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcode.c objcode.c:45:51: warning: "/*" within comment [-Wcomment] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsset.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsub.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objprt.c objprt.c: In function 'PrintFormBooleanAsnRead': objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormEnumAsnRead': objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormTextAsnRead': objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'UserFormatAsnRead': objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormAsnRead': objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormatAsnRead': objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormBlockAsnRead': objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintTemplateAsnRead': objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfdef.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalignloc.c objalignloc.c: In function 'AlignLocSetAsnRead': objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'Loc_locFree': objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignLocAsnRead': objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'Loc_locAsnRead': objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdFree': objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignBoxAsnRead': objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignRowsAsnRead': objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignColumnsAsnRead': objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtable.c objtable.c: In function 'SeqTableColumnInfoAsnRead': objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnRead': objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnWrite': objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableAsnRead': objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnRead': objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnWrite': objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'CommonBytesTableAsnRead': objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonBytesTableAsnWrite': objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableSingleDataFree': objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableMultiDataAsnRead': objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSparseIndexAsnRead': objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpubme.c objpubme.c: In function 'PubmedEntryAsnRead': objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c: In function 'PubmedUrlAsnRead': objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmdrs.c objmdrs.c: In function 'MedlarsEntryAsnRead': objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c: In function 'MedlarsRecordAsnRead': objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objproj.c objproj.c: In function 'ProjectAsnRead': objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: In function 'ProjectDescrAsnRead': objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescFree': objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescAsnRead': objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objproj.c: In function 'ProjdescAsnRead': objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgbseq.c objgbseq.c: In function 'GBSetAsnRead': objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBSeqAsnRead': objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBReferenceAsnRead': objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentAsnRead': objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentAsnRead': objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureAsnRead': objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureSetAsnRead': objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqDataAsnRead': objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBXrefAsnRead': objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentParagraphAsnRead': objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentItemAsnRead': objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentItemAsnRead': objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBIntervalAsnRead': objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBQualifierAsnRead': objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqItemAsnRead': objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtseq.c objtseq.c: In function 'TSeqAsnRead': objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'TSeqSetAsnRead': objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToTSeq': objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToMiniTSeq': objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objinsdseq.c objinsdseq.c: In function 'INSDSetAsnRead': objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDSeqAsnRead': objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDReferenceAsnRead': objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentAsnRead': objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentAsnRead': objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureAsnRead': objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureSetAsnRead': objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqDataAsnRead': objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDXrefAsnRead': objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentParagraphAsnRead': objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentItemAsnRead': objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentItemAsnRead': objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDIntervalAsnRead': objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDQualifierAsnRead': objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqItemAsnRead': objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmacro.c objmacro.c: In function 'AECRActionAsnRead': objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseActionAsnRead': objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnRead': objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnWrite': objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnRead': objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnWrite': objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionAsnRead': objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'WordSubstitutionSetAsnRead': objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionSetAsnWrite': objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintAsnRead': objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnRead': objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnWrite': objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'LocationPosConstraintFree': objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationConstraintAsnRead': objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValAsnRead': objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValChoiceFree': objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualLegalValChoiceAsnRead': objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnRead': objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnWrite': objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualChoiceFree': objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualChoiceAsnRead': objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldAsnRead': objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldLegalAsnRead': objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldPairAsnRead': objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaFeatTypeFree': objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualAsnRead': objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualPairAsnRead': objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualPairAsnRead': objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualChoiceFree': objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualTextValAsnRead': objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValChoiceFree': objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnRead': objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnWrite': objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtFieldPairAsnRead': objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldFree': objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMoleculePairAsnRead': objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTechniquePairAsnRead': objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoCompletednessPairAsnRead': objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMolClassPairAsnRead': objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTopologyPairAsnRead': objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoStrandPairAsnRead': objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldPairFree': objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnRead': objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnWrite': objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldConstraintAsnRead': objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldFree': objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnRead': objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnWrite': objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'DBLinkFieldPairAsnRead': objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldConstraintAsnRead': objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeFree': objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintAsnRead': objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PublicationConstraintAsnRead': objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceConstraintAsnRead': objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead': objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldFree': objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead': objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead': objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite': objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnRead': objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnWrite': objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldTypeFree': objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree': objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'QuantityConstraintFree': objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintAsnRead': objmacro.c:8945:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8944:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TranslationConstraintAsnRead': objmacro.c:9170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9169:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceFree': objmacro.c:9322:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9384:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnRead': objmacro.c:9616:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9613:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnWrite': objmacro.c:9669:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextMarkerFree': objmacro.c:9709:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9741:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextPortionAsnRead': objmacro.c:9937:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9936:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldEditAsnRead': objmacro.c:10153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10152:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldPairTypeFree': objmacro.c:10300:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10350:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyActionAsnRead': objmacro.c:10567:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10566:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnRead': objmacro.c:10744:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10743:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnWrite': objmacro.c:10819:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformFree': objmacro.c:10875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextTransformAsnRead': objmacro.c:10910:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnRead': objmacro.c:11081:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11078:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnWrite': objmacro.c:11134:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConvertActionAsnRead': objmacro.c:11214:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11213:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CopyActionAsnRead': objmacro.c:11406:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11405:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnRead': objmacro.c:11572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11571:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnWrite': objmacro.c:11647:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'AECRParseActionAsnRead': objmacro.c:11745:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11744:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnRead': objmacro.c:11961:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11960:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnWrite': objmacro.c:12029:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveOutsideActionAsnRead': objmacro.c:12119:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:12118:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ActionChoiceFree': objmacro.c:12259:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12312:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgChoiceFree': objmacro.c:12499:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12528:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgAsnRead': objmacro.c:12711:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:12710:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcGeneralIdFree': objmacro.c:12839:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12871:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcFree': objmacro.c:13027:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:13065:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDstOrgAsnRead': objmacro.c:13319:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13318:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDestFree': objmacro.c:13447:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13485:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationIntervalAsnRead': objmacro.c:13693:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13692:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationChoiceFree': objmacro.c:13818:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13850:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnRead': objmacro.c:14024:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14021:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnWrite': objmacro.c:14077:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListChoiceFree': objmacro.c:14117:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceListChoiceAsnRead': objmacro.c:14149:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyFeatureActionAsnRead': objmacro.c:14338:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14337:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveFeatureActionAsnRead': objmacro.c:14602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14601:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFromCDSOptionsAsnRead': objmacro.c:14766:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14765:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsFree': objmacro.c:14900:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead': objmacro.c:14932:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RegionTypeAsnRead': objmacro.c:15099:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15098:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureDstOptionsFree': objmacro.c:15215:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15250:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureActionAsnRead': objmacro.c:15464:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15463:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditLocationStrandAsnRead': objmacro.c:15670:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15669:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial5SetActionAsnRead': objmacro.c:15831:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15830:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial3SetActionAsnRead': objmacro.c:15992:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15991:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PartialBothSetActionAsnRead': objmacro.c:16153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16152:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ExtendToFeatureAsnRead': objmacro.c:16315:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16314:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationEditTypeFree': objmacro.c:16452:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16499:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditFeatureLocationActionAsnRead': objmacro.c:16774:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16773:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnRead': objmacro.c:16971:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16970:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnWrite': objmacro.c:17053:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveDescriptorActionAsnRead': objmacro.c:17151:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17150:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AutodefActionAsnRead': objmacro.c:17317:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixPubCapsActionAsnRead': objmacro.c:17488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17487:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SortFieldsActionAsnRead': objmacro.c:17690:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17689:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixAuthorCapsAsnRead': objmacro.c:17866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17865:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixCapsActionFree': objmacro.c:17982:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:18017:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixFormatActionFree': objmacro.c:18189:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:18218:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead': objmacro.c:18422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18421:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'GeneXrefTypeAsnRead': objmacro.c:18613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18612:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'XrefTypeFree': objmacro.c:18747:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'XrefTypeAsnRead': objmacro.c:18779:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnRead': objmacro.c:18948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnWrite': objmacro.c:19023:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MakeGeneXrefActionAsnRead': objmacro.c:19116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19115:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AuthorFixActionAsnRead': objmacro.c:19281:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19280:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'UpdateSequencesActionAsnRead': objmacro.c:19447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19446:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CreateTSAIdsSrcFree': objmacro.c:19574:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'CreateTSAIdsSrcAsnRead': objmacro.c:19606:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CreateTSAIdsActionAsnRead': objmacro.c:19787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19786:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AutofixActionAsnRead': objmacro.c:19966:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19965:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixSetsActionFree': objmacro.c:20084:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixSetsActionAsnRead': objmacro.c:20113:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TableMatchTypeFree': objmacro.c:20269:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TableMatchTypeAsnRead': objmacro.c:20301:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TableMatchAsnRead': objmacro.c:20547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:20546:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyTableExtraDataFree': objmacro.c:20675:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ApplyTableExtraDataAsnRead': objmacro.c:20704:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyTableActionAsnRead': objmacro.c:20877:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:20876:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AddFileActionAsnRead': objmacro.c:21057:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:21056:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AddDescriptorListActionAsnRead': objmacro.c:21225:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:21224:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AddDescriptorListActionAsnWrite': objmacro.c:21300:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveSequencesActionAsnRead': objmacro.c:21393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:21392:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveSequencesActionAsnWrite': objmacro.c:21461:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceFree': objmacro.c:21512:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:21613:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SearchFuncFree': objmacro.c:22093:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:22131:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SimpleReplaceAsnRead': objmacro.c:22400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:22399:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceFuncFree': objmacro.c:22536:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ReplaceFuncAsnRead': objmacro.c:22571:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceRuleAsnRead': objmacro.c:22751:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:22750:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SuspectRuleAsnRead': objmacro.c:22921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:22920:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:21852:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixSetsActionAsnRead': objmacro.c:20172:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:18284:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:18084:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12930:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9466:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9800:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10416:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12382:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12580:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:13160:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13552:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13906:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15320:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16603:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'TableMatchTypeAsnRead': objmacro.c:20392:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:22236:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objent2.c objent2.c: In function 'Entrez2IdListAsnRead': objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanExpAsnRead': objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementFree': objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LimitsAsnRead': objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanTermAsnRead': objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2RequestAsnRead': objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2RequestFree': objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2RequestAsnRead': objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2EvalBooleanAsnRead': objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermQueryAsnRead': objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermPosAsnRead': objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2HierQueryAsnRead': objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2GetLinksAsnRead': objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2IdAsnRead': objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DtFilterAsnRead': objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2ReplyAsnRead': objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2ReplyFree': objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2ReplyAsnRead': objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2InfoAsnRead': objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanReplyAsnRead': objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumListAsnRead': objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2TermListAsnRead': objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2HierNodeAsnRead': objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2LinkSetAsnRead': objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountListAsnRead': objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DbInfoAsnRead': objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2FieldInfoAsnRead': objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkInfoAsnRead': objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead': objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumAsnRead': objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DocsumDataAsnRead': objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermAsnRead': objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountAsnRead': objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objent2.c: In function 'E2ReplyAsnRead': objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ent2api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pmfapi.c pmfapi.c: In function 'PubMedSynchronousQuery': pmfapi.c:1224:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQueryEx': pmfapi.c:1458:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQueryTI': pmfapi.c:1636:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQuerySRA': pmfapi.c:1717:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiRevHistSynchronousQuery': pmfapi.c:1790:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiAccVerSynchronousQuery': pmfapi.c:1842:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnRevHistSynchronousQuery': pmfapi.c:1893:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiSeqIdSetSynchronousQuery': pmfapi.c:1944:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnListSynchronousQuery': pmfapi.c:1994:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtax3.c objtax3.c: In function 'Taxon3RequestAsnRead': objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RequestFree': objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'SequenceOfIntAsnRead': objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Taxon3ReplyAsnRead': objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ReplyFree': objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ErrorAsnRead': objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3DataAsnRead': objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Value_valueFree': objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RefreshFlagsAsnRead': objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objtax3.c: In function 'T3ReplyAsnRead': objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3RequestAsnRead': objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c:1361:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tax3api.c tax3api.c: In function 'Tax3SynchronousQuery': tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'CheckSuggestedFixes': tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'TryNewSuggestedFixes': tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'GetSuggestedNamesFromRank': tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'BioSourceFromBioSample': tax3api.c:3220:16: warning: unused variable 'max' [-Wunused-variable] tax3api.c: At top level: tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function] tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function] tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function] tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function] tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function] tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objegkludge.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentgene.c objentgene.c: In function 'EntrezgeneAsnRead': objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'EntrezgeneSetAsnRead': objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'EntrezgeneSetAsnWrite': objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'GeneTrackAsnRead': objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'GeneCommentaryAsnRead': objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'Method_methodFree': objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'Method_methodAsnRead': objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'GeneSourceAsnRead': objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'XtraTermsAsnRead': objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'OtherSourceAsnRead': objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objentgene.c:1166:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmla2.c objmla2.c: In function 'Mla2RequestFree': objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsg2AsnRead': objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsgList2AsnRead': objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla2.c: In function 'Mla2BackAsnRead': objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mla2api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF qblastapi.c qblastapi.c: In function 'SecondQBlastCallback': qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx': qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx': qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscnapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmim.c objmim.c: In function 'MimSetAsnRead': objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimDateAsnRead': objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEntryAsnRead': objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimCitAsnRead': objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimTextAsnRead': objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEditItemAsnRead': objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAllelicVariantAsnRead': objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimIndexTermAsnRead': objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimReferenceAsnRead': objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimLinkAsnRead': objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAuthorAsnRead': objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimPageAsnRead': objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objvalid.c objvalid.c: In function 'FieldRuleAsnRead': objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnRead': objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnWrite': objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldRuleAsnRead': objvalid.c:390:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:389:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnRead': objvalid.c:573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:570:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnWrite': objvalid.c:626:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentRuleAsnRead': objvalid.c:708:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:707:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnRead': objvalid.c:898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:895:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnWrite': objvalid.c:951:12: warning: unused variable 'av' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mimapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqport.c seqport.c: In function 'productLoc_to_locationLoc': seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable] seqport.c: In function 'NaLocFromNaInterval': seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable] seqport.c: In function 'dnaLoc_to_aaLoc': seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable] seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable] seqport.c: In function 'DeltaRevComp': seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] seqport.c: In function 'SeqSearchEnterNucWord': seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: In function 'ProtSearchEnterProtWord': seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sequtil.c sequtil.c: In function 'GetPointsForLeftAndRightOffsets': sequtil.c:7959:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqPointWriteEx': sequtil.c:8492:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'TaxNameFromCommon': sequtil.c:8648:5: warning: missing braces around initializer [-Wmissing-braces] sequtil.c:8648:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces] sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr': sequtil.c:9470:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqIdFromAccessionEx': sequtil.c:10070:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'BSCompressDNAOld': sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GenericCompressDNAEx': sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'BSConvertSeq': sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'SeqLocCoverage': sequtil.c:6905:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GetThePointForOffsetEx': sequtil.c:7919:14: warning: 'last_strand' may be used uninitialized in this function [-Wuninitialized] sequtil.c:7900:14: warning: 'first_strand' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtutil.c prtutil.c: In function 'StdFormatPrint': prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simple.c In file included from simple.c:69:0: ../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default] ../include/all.h:5745:0: note: this is the location of the previous definition simple.c: In function 'SimpleSeqAsnRead': simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wuninitialized] simple.c:170:17: note: 'b' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofasta.c tofasta.c: In function 'DoSpecialDefline': tofasta.c:1407:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] tofasta.c: At top level: tofasta.c:3072:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function] tofasta.c:3101:16: warning: 'get_descr' defined but not used [-Wunused-function] tofasta.c:3196:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function] tofasta.c:3359:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function] tofasta.c:3445:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function] tofasta.c:3479:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2736:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c:2761:18: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c: In function 'FastaReadSequenceInternalEx': tofasta.c:2476:43: warning: 'mask_to' may be used uninitialized in this function [-Wuninitialized] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2852:19: warning: 'fd' may be used uninitialized in this function [-Wuninitialized] tofasta.c:2672:25: warning: 'firstchar' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofile.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tomedlin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valid.c valid.c: In function 'Valid1GatherProc': valid.c:2238:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqIdCase': valid.c:3342:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateGenProdSet': valid.c:5551:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable] valid.c: In function 'CountAdjacentProc': valid.c:6193:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqInst': valid.c:6584:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable] valid.c:6526:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioSource': valid.c:13688:19: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateDblink': valid.c:14737:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqDescrCommon': valid.c:14795:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContextIndexed': valid.c:17742:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] valid.c:17154:41: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBarcodeIndexNumber': valid.c:18667:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContext': valid.c:18775:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateRptUnit': valid.c:20323:32: warning: variable 'found' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForCommonCDSProduct': valid.c:22238:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable] valid.c:22235:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForIllegalDbxref': valid.c:22617:16: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateAnticodon': valid.c:23348:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable] valid.c:23347:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c: In function 'IsGeneXrefRedundant': valid.c:24599:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqFeat': valid.c:24763:19: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c:24741:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'CdTransCheck': valid.c:26675:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable] valid.c: In function 'SpliceCheckEx': valid.c:27477:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable] valid.c: In function 'CdsProductIdCheck': valid.c:27823:15: warning: variable 'grp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqLoc': valid.c:27887:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c:27886:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] valid.c: At top level: valid.c:1415:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function] valid.c:4089:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function] valid.c:5438:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function] valid.c:6450:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function] valid.c:9394:16: warning: 'ConsistentWithC' defined but not used [-Wunused-function] valid.c:12157:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function] valid.c:12959:16: warning: 'LatLonInRange' defined but not used [-Wunused-function] valid.c:13056:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function] valid.c:18292:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function] valid.c:18342:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function] valid.c:24281:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valapi.c valapi.c: In function 'DoesStringMatchExpression': valapi.c:253:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable] valapi.c: In function 'ReorderStructuredCommentFields': valapi.c:777:82: warning: unused variable 'ufp_last' [-Wunused-variable] valapi.c:777:72: warning: unused variable 'ufp_next' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr.c alignmgr.c: In function 'AlnMgrIndexParentSA': alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] alignmgr.c: In function 'AlnMgrGetNthBlockRange': alignmgr.c:4182:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx': alignmgr.c:5157:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMapBioseqToBioseq': alignmgr.c:10840:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable] alignmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr.c:5405:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function] alignmgr.c:10572:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function] alignmgr.c:6123:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function] alignmgr.c:6650:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function] alignmgr.c: In function 'AlnMgrUnpackSeqAlign': alignmgr.c:1149:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList': alignmgr.c:1755:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrDeleteNthRow': alignmgr.c:9809:31: warning: 'abp_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA': alignmgr.c:4115:19: warning: 'tmp_end' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:4113:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'am_is_consistent': alignmgr.c:10114:43: warning: 'n' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetSubAlign': alignmgr.c:9097:15: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster': alignmgr.c:5829:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5553:17: note: 'sip_tmp' was declared here alignmgr.c:5881:25: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5846:18: note: 'sip_tmp' was declared here alignmgr.c:5865:11: warning: 'sip_head' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5845:18: note: 'sip_head' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliparse.c aliparse.c: In function 's_IsInterleaved': aliparse.c:930:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterId': aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterSeq': aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeInterleaved': aliparse.c:1193:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_ProcessContigId': aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessContigSeq': aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeContiguous': aliparse.c:1603:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_CheckContext': aliparse.c:2151:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 'PrintOutMultAlign': aliparse.c:3161:10: warning: statement with no effect [-Wunused-value] aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable] aliparse.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function] aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function] aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function] aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function] aliparse.c: In function 's_GetRowIdString': aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 's_ProcessMaybes': aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wuninitialized] aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 'Ali_Read': aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wuninitialized] aliparse.c:1154:20: note: 'previousLength' was declared here aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wuninitialized] aliparse.c:820:20: note: 'seqLinePtr' was declared here aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliread.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignval.c alignval.c: In function 'ValidateSeqlengthInDenseSeg': alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] alignval.c: In function 'PercentStringMatch': alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'CheckAlnSeqLens': alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'ValidateSeqAlign': alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] alignval.c: In function 'GetAlignmentColumnPercentIdentities': alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: In function 'WeightedAlignmentPercentIdentity': alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function] alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function] alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil1.c sqnutil1.c: In function 'GeneExtendFunc': sqnutil1.c:2514:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseAnticodon': sqnutil1.c:3961:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseCodeBreak': sqnutil1.c:4081:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'CleanOrgModListEx': sqnutil1.c:6280:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sqnutil1.c: In function 'CleanUpPubdescAuthors': sqnutil1.c:9213:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs': sqnutil1.c:14155:24: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'LinkTwoFeatures': sqnutil1.c:18204:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback': sqnutil1.c:18750:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable] sqnutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil1.c:2509:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function] sqnutil1.c:5290:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function] sqnutil1.c:7645:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function] sqnutil1.c:10250:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function] sqnutil1.c:10364:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil2.c sqnutil2.c: In function 'FindResidueByName': sqnutil2.c:5197:11: warning: variable 'last' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFeatureTableEx': sqnutil2.c:7202:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable] sqnutil2.c:7194:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'SeqEntryCopyReplace': sqnutil2.c:9199:8: warning: variable 'type' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamingReadBioseq': sqnutil2.c:10024:10: warning: variable 'level' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamAsnForDescriptors': sqnutil2.c:10257:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'StreamingReadWriteSeqSubmit': sqnutil2.c:10637:1: warning: label 'ret' defined but not used [-Wunused-label] sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors': sqnutil2.c:10676:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'ReadFeatureTableFile': sqnutil2.c:11627:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFastaOnly': sqnutil2.c:11821:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline': sqnutil2.c:12352:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'PrintQualityScoresToBuffer': sqnutil2.c:12958:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'GetScoresbySeqId': sqnutil2.c:13367:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'IsStringInSpanInList': sqnutil2.c:17223:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable] sqnutil2.c:17221:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'CreateStructuredCommentsFromFile': sqnutil2.c:19251:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'AlignmentIntervalToString': sqnutil2.c:19615:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable] sqnutil2.c:19614:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'AdjustForConsensusSpliceCallback': sqnutil2.c:20781:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'RemoveGIProc': sqnutil2.c:21356:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sqnutil2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil2.c:4661:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function] sqnutil2.c:8266:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function] sqnutil2.c:16055:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil3.c sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap': sqnutil3.c:526:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CautiousSeqEntryCleanup': sqnutil3.c:2265:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences': sqnutil3.c:3376:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sqnutil3.c:3370:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx': sqnutil3.c:5124:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable] sqnutil3.c:5118:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable] sqnutil3.c:5118:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'GetCDSformRNA': sqnutil3.c:19157:8: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'FindTextInFlatfileEx': sqnutil3.c:20891:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CheckForTitleAuthorConflicts': sqnutil3.c:21972:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'SortVnpByBspProjectId': sqnutil3.c:25733:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress] sqnutil3.c: In function 'GetDiscrepancyItemTextEx': sqnutil3.c:28202:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable] sqnutil3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil3.c:9621:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function] sqnutil3.c:9672:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function] sqnutil3.c:9755:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function] sqnutil3.c:10252:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function] sqnutil3.c:13399:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function] sqnutil3.c:16581:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function] sqnutil3.c:18676:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function] sqnutil3.c:19971:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function] sqnutil3.c:23725:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function] sqnutil3.c:31396:13: warning: 'FindBadGPS' defined but not used [-Wunused-function] sqnutil3.c:31404:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function] sqnutil3.c:33544:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function] sqnutil3.c: In function 'FillInMissingTraces': sqnutil3.c:31968:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback': sqnutil3.c:889:23: warning: 'best_diff' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'ValidateInferenceQualifier': sqnutil3.c:6033:6: warning: 'rest' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c:6087:13: warning: 'best' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'CheckForDivConflicts': sqnutil3.c:7901:28: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'tRNASameStrandBioseqCallback': sqnutil3.c:16126:8: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'FindMismatchedComments': sqnutil3.c:25390:47: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'FixCountryColons': sqnutil3.c:7523:14: warning: 'biop' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'AddmRNAForCDS': sqnutil3.c:19565:3: warning: 'rna' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil4.c sqnutil4.c: In function 'ListClauses': sqnutil4.c:8272:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'SmashOneTallClause': sqnutil4.c:9576:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'GetFeatureClauseForSeg': sqnutil4.c:10448:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'IsAmplifiedMiscFeat': sqnutil4.c:10702:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:13849:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ExtraCDSCreationActions': sqnutil4.c:14728:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'TESTDisplayQualCombo': sqnutil4.c:15752:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS': sqnutil4.c:17198:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'AddNewUniqueAnnotations': sqnutil4.c:17372:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'AssignBioseqToLineageGroup': sqnutil4.c:18024:27: warning: variable 'vnp_last' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ImportNucleotideFASTASequencesFromFile': sqnutil4.c:26442:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil4.c:4945:13: warning: 'CountFeatures' defined but not used [-Wunused-function] sqnutil4.c:9510:13: warning: 'RemoveFeats' defined but not used [-Wunused-function] sqnutil4.c:9674:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function] sqnutil4.c:9705:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function] sqnutil4.c:15584:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function] sqnutil4.c:15872:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function] sqnutil4.c:15901:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:14023:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF subutil.c subutil.c: In function 'AddSeqLitToBioseq': subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] subutil.c: In function 'AddReferenceToSegmentedEntry': subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable] subutil.c: In function 'GetDNAConv': subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'GetProteinConv': subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddBasesToByteStore': subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddAAsToByteStore': subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'CitArtBuild': subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] subutil.c: At top level: subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function] subutil.c: In function 'AddGapToSegmentedEntry': subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF edutil.c edutil.c: In function 'SeqLocsToDeltaSeqs': edutil.c:795:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocCopyPart': edutil.c:2243:13: warning: variable 'done' set but not used [-Wunused-but-set-variable] edutil.c: In function 'IndexedSeqFeatsCopy': edutil.c:2400:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqFeatsCopy': edutil.c:2504:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocInsert': edutil.c:3686:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdRecreateDeletedFeats': edutil.c:4212:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocInsert': edutil.c:4512:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocDelete': edutil.c:5069:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdInsertAdjustFeat': edutil.c:5300:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c: In function 'SeqEdDeleteFromBsp': edutil.c:6485:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6548:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6437:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable] edutil.c:6428:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable] edutil.c: In function 'BioseqCopyEx': edutil.c:2152:25: warning: 'head' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff1.c asn2ff1.c: In function 'asn2ff_print': asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable] asn2ff1.c: In function 'Asn2ffJobCreate': asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'SeqEntryToEntrez': asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable] asn2ff1.c: In function 'SeqLocToFlat': asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'asn2ff_setup': asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] asn2ff1.c: In function 'PrintStatusLine': asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable] asn2ff1.c: In function 'asn2gb_setup': asn2ff1.c:2403:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff1.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function] asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function] asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function] asn2ff1.c: In function 'asn2gp_setup': asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'asn2embl_setup': asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq': asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff2.c asn2ff2.c: In function 'GetStrForBankit': asn2ff2.c:518:9: warning: unused variable 'i' [-Wunused-variable] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:769:34: warning: unused variable 'string' [-Wunused-variable] asn2ff2.c: In function 'GP_GetSeqDescrComms': asn2ff2.c:1163:10: warning: unused variable 'got_comment' [-Wunused-variable] asn2ff2.c: At top level: asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff2.c: In function 'GetGibbsqCommentLength': asn2ff2.c:1600:7: warning: unused variable 'gibbsq' [-Wunused-variable] asn2ff2.c: In function 'GatherDescrByChoice': asn2ff2.c:1864:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable] asn2ff2.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff2.c:232:16: warning: 'has_comment' defined but not used [-Wunused-variable] asn2ff2.c:680:16: warning: 'GetEvidence' defined but not used [-Wunused-function] asn2ff2.c:1190:16: warning: 'GetSPBlock' defined but not used [-Wunused-function] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:829:8: warning: 'is_other' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff3.c asn2ff3.c: In function 'PutGeneFirst': asn2ff3.c:1662:26: warning: unused variable 'qual_temp' [-Wunused-variable] asn2ff3.c:1661:10: warning: unused variable 'still_looking' [-Wunused-variable] asn2ff3.c: In function 'mRNAEvidenceComment': asn2ff3.c:1746:9: warning: unused variable 'Locus_id' [-Wunused-variable] asn2ff3.c: In function 'Add_gene_id': asn2ff3.c:3306:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat] asn2ff3.c: In function 'Add_trid': asn2ff3.c:3712:7: warning: unused variable 'gi' [-Wunused-variable] asn2ff3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff3.c:3291:13: warning: 'Add_gene_id' defined but not used [-Wunused-function] asn2ff3.c: In function 'GettRNAaa': asn2ff3.c:2207:6: warning: 'seq_code' may be used uninitialized in this function [-Wuninitialized] asn2ff3.c: In function 'Add_dbxref.isra.0': asn2ff3.c:858:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff4.c asn2ff4.c: In function 'FlatLocPoint': asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'do_FlatLoc': asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff4.c: At top level: asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff4.c: In function 'CreateImpFeatFromProt': asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchNAGeneToFeat': asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchAAGeneToFeat': asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff4.c: In function 'CheckNewSfpLoc': asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff5.c asn2ff5.c: In function 'format_cit_sub': asn2ff5.c:1023:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_thesis': asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_book': asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_jourarticle': asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff5.c: In function 'StripParanthesis': asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value] asn2ff5.c: In function 'PostARefErrMessage': asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable] asn2ff5.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function] asn2ff5.c: In function 'CheckPubs': asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c: In function 'FlatJournal': asn2ff5.c:1946:23: warning: 'temp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1151:10: warning: 'afp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1051:11: note: 'afp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff6.c asn2ff6.c: In function 'AddGBQual': asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'BioseqGetGBDivCodeEx': asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'GR_PrintPubs': asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable] asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable] asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable] asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'ValidateOtherAccession': asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable] asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable] asn2ff6.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2866:33: warning: 'exp' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'MakeBaseLocusAwp': asn2ff6.c:3093:17: warning: 'num_of_digits' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c asn2gnb1.c: In function 'IsWholeWordSubstr': asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoOneSection': asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'Count2Seg': asn2gnb1.c:3215:18: warning: variable 'to' set but not used [-Wunused-but-set-variable] asn2gnb1.c:3213:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: asn2gnb1.c:3492:3: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3492:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces] asn2gnb1.c: In function 'SeqIdWriteForTable': asn2gnb1.c:5571:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] asn2gnb1.c:5570:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoImmediateFormat': asn2gnb1.c:6704:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c:6683:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'asn2gnbk_format': asn2gnb1.c:6825:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c: In function 'asn2gnbk_cleanup': asn2gnb1.c:6871:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'SeqEntryToGnbk': asn2gnb1.c:7057:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable] asn2gnb1.c:7052:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c asn2gnb2.c: In function 's_LocusAddSuffix': asn2gnb2.c:206:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'AddLocusBlock': asn2gnb2.c:1323:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb2.c: In function 'AddDblinkBlock': asn2gnb2.c:2756:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'GetRefsOnBioseq': asn2gnb2.c:5448:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5445:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5439:22: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5433:22: warning: variable 'left' set but not used [-Wunused-but-set-variable] asn2gnb2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c asn2gnb3.c: In function 'GetStatusForRefTrack': asn2gnb3.c:601:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetSourcesOnBioseq': asn2gnb3.c:4151:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4149:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4148:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnCdsProduct': asn2gnb3.c:5007:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct': asn2gnb3.c:5155:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5154:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5153:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5152:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5151:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnBioseq': asn2gnb3.c:5376:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5349:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable] asn2gnb3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c asn2gnb4.c: In function 'FormatFeatureBlockQuals': asn2gnb4.c:3591:50: warning: "/*" within comment [-Wcomment] asn2gnb4.c:2969:24: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c:2910:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FF_asn2gb_www_featkey': asn2gnb4.c:5180:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:6354:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat': asn2gnb4.c:8448:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: In function 'FormatFeatureQuals': asn2gnb4.c:8521:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:7398:24: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c asn2gnb5.c: In function 'FormatCitBookArt': asn2gnb5.c:1874:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] asn2gnb5.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c asn2gnb6.c: In function 'FlatLocElement': asn2gnb6.c:2390:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb6.c: In function 'FormatContigBlock': asn2gnb6.c:5401:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] asn2gnb6.c: In function 'FormatSequenceBlock': asn2gnb6.c:5855:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb6.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ftusrstr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfeat.c gbfeat.c: In function 'CkLabelType': gbfeat.c:1530:4: warning: suggest parentheses around '&&' within '||' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbftglob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbparint.c gbparint.c: In function 'Nlm_gbparselex': gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gbparint.c: In function 'Nlm_gbparselex_ver': gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpars.c utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces] utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpub.c utilpub.c: In function 'FindCit': utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] utilpub.c: In function 'ChangeCitQual': utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable] utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ffprint.c ffprint.c: In function 'FFBSPrint': ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable] ffprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wprint.c wprint.c: In function 'LocPrintGenome': wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable] wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable] wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable] wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable] wprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable] wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable] wprint.c: In function 'www_xref': wprint.c:1376:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c:1376:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'www_xref_button': wprint.c:1419:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c:1419:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'PrintSPBlock': wprint.c:1443:24: warning: 's' may be used uninitialized in this function [-Wuninitialized] wprint.c:1601:13: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF satutil.c satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] satutil.c: At top level: satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function] satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmgr.c seqmgr.c: In function 'SeqEntrySetScope': seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'ClearBioseqFindCache': seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp': seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'CheckForTransSplice': seqmgr.c:5644:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqEntryAsnOut': seqmgr.c:11692:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable] seqmgr.c:11692:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable] seqmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqmgr.c: In function 'SeqMgrGetNextDescriptor': seqmgr.c:9580:56: warning: 'bssp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmgr.c objmgr.c: In function 'ObjMgrSelectFunc2': objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable] objmgr.c: In function 'ObjMgrAlsoSelect': objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] objmgr.c:4030:22: note: 'ssp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gather.c gather.c: In function 'AttachDataProc': gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable] gather.c: In function 'GatherSeqFeat': gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wuninitialized] gather.c:1530:56: warning: 'max_interval' may be used uninitialized in this function [-Wuninitialized] gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'gather_align_data': gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wuninitialized] gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'GatherBioseqFunc': gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wuninitialized] gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wuninitialized] gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accmmdbs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acccn3ds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lsqfetch.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF findrepl.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF codon.c codon.c: In function 'make_cds_paragraph': codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzcoll.c jzcoll.c: In function 'load_default_matrix': jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c: In function 'GetUseThisGi': jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable] jzcoll.c: In function 'buffer_for_feature': jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable] jzcoll.c: In function 'ProcessTextInsertion': jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'satcollfunc': jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable] jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable] jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable] jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable] jzcoll.c: In function 'collect_anpnode_with_option': jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable] jzcoll.c: In function 'ck_seqfeat_extra': jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable] jzcoll.c: In function 'load_open_close_sts_mark': jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'FeatNodeCompProc': jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable] jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable] jzcoll.c: At top level: jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function] jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function] jzcoll.c: In function 'load_text': jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzmisc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF maputil.c maputil.c: In function 'load_gene_list': maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable] maputil.c: In function 'gmarkfunc': maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mconsist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macroapi.c macroapi.c: In function 'AdvancedStringCompare': macroapi.c:4416:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'RemoveGBQualMatch': macroapi.c:6919:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetNameInPrimerList': macroapi.c:10517:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetSeqInPrimerList': macroapi.c:10538:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetCitListsForSeqEntry': macroapi.c:15443:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c:15441:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetPubMLStatus': macroapi.c:17914:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat': macroapi.c:24814:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat': macroapi.c:24937:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat': macroapi.c:25004:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'FindPosBeforeFeat': macroapi.c:25301:15: warning: variable 'regulator' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'PerformAutofixInSeqEntry': macroapi.c:28058:8: warning: unused variable 'num_created' [-Wunused-variable] macroapi.c: In function 'AddFileDescriptors': macroapi.c:28453:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] macroapi.c: In function 'PreprocessAddDescriptorListMacro': macroapi.c:30069:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] macroapi.c: In function 'SummarizeRemoveOutsideAction': macroapi.c:30940:11: warning: unused variable 'case_insensitive' [-Wunused-variable] macroapi.c: In function 'GetObjectTableForTabTable': macroapi.c:35366:63: warning: variable 'last' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'CheckObjTableForExistingText': macroapi.c:35930:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'FixSuspectProductNamesInEntrezGene': macroapi.c:38178:18: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] macroapi.c: At top level: macroapi.c:1189:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function] macroapi.c:2760:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function] macroapi.c:4543:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function] macroapi.c:5435:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function] macroapi.c:10224:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function] macroapi.c:15632:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function] macroapi.c:35102:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function] macroapi.c:20392:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function] macroapi.c:26150:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function] macroapi.c: In function 'GetFeatureListForProteinBioseq': macroapi.c:34248:10: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToBond': macroapi.c:24176:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToSite': macroapi.c:24223:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetAuthorListFromString': macroapi.c:14074:30: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'CaptureRefBlockSerialNumbers': macroapi.c:15424:26: warning: 'ppr' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetFieldValueForObjectEx': macroapi.c:13405:29: warning: 'ipp' may be used uninitialized in this function [-Wuninitialized] macroapi.c:13352:21: note: 'ipp' was declared here macroapi.c:13350:21: warning: 'cpp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetDBxrefForBioSource': macroapi.c:22815:12: warning: 'dbtag' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpedit.c salpedit.c: In function 'SeqAlignInsert': salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] salpedit.c: At top level: salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function] salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function] salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function] salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function] salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function] salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function] salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function] salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function] salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function] salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function] salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function] salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function] salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function] salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function] salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function] salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function] salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function] salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function] salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function] salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpstat.c salpstat.c: In function 'DenseSegStats': salpstat.c:310:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] salpstat.c: In function 'SeqAlignScoreFix': salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'DenseSegStats': salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wuninitialized] salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScoreFN': salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wuninitialized] salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScore': salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpacc.c salpacc.c: In function 'SeqAlignStrand': salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable] salpacc.c: In function 'SeqAlignStop': salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wuninitialized] salpacc.c:495:17: warning: 'val' may be used uninitialized in this function [-Wuninitialized] salpacc.c: In function 'SeqAlignMolType': salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salprop.c salprop.c: In function 'CopySeqLocFromSeqAlign': salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] salprop.c: In function 'FeatListToProp': salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable] salprop.c: At top level: ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salprop.c: In function 'ApplyNewSeqFeat': salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salprop.c:514:17: note: 'stop' was declared here salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] salprop.c:674:17: note: 'sfp' was declared here salprop.c:734:23: warning: 'ppp.p5' may be used uninitialized in this function [-Wuninitialized] salprop.c:679:17: note: 'ppp.p5' was declared here salprop.c:737:29: warning: 'ppp.p3' may be used uninitialized in this function [-Wuninitialized] salprop.c:679:17: note: 'ppp.p3' was declared here salprop.c:861:33: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salprop.c: In function 'MergeFunc': salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wuninitialized] salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsap.c salsap.c: In function 'DenseDiagToDenseSegFunc': salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable] salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable] salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable] salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable] salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable] salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable] salsap.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function] salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function] salsap.c: In function 'CleanStrandsSeqAlign': salsap.c:1605:32: warning: 'dim' may be used uninitialized in this function [-Wuninitialized] salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wuninitialized] salsap.c:1605:32: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'LocalAlignToSeqAnnotDimn': salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'multseqalign_from_pairseqalign': salsap.c:4498:22: warning: 'strandp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salstruc.c salstruc.c: In function 'data_collect_arrange': salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable] salstruc.c: In function 'ShowAlignmentText': salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable] salstruc.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salstruc.c: In function 'next_notemptyline': salstruc.c:375:19: warning: 'str' may be used uninitialized in this function [-Wuninitialized] salstruc.c: In function 'data_collect_arrange': salstruc.c:920:20: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:872:19: note: 'entityID' was declared here salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:1005:17: note: 'entityID' was declared here salstruc.c: In function 'ShowAlignmentText': salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salutil.c salutil.c: In function 'ReadBufferFromSap': salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable] salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable] salutil.c: In function 'IS_protSeqLoc': salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable] salutil.c: In function 'ReplaceSeqIdWithSeqId': salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable] salutil.c: In function 'del_ssp_fromid': salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable] salutil.c: In function 'checkCDSselect_forprotein': salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salutil.c: In function 'NoMoreSegGapForOneAlignment': salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration] salutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salutil.c: In function 'del_ssp_fromid': salutil.c:1750:30: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] salutil.c: In function 'sesp_to_slp': salutil.c:1974:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvseq.c udvseq.c: In function 'UDV_EncodeIdxFeat': udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] udvseq.c: In function 'UDV_BigEncodeIdxFeat': udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blocks.c blocks.c: In function 'IndexBlocks': blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'IndexNewBlocks': blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'GetBlockOrientation': blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SAMergeBlocks': blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wuninitialized] blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wuninitialized] blocks.c:1509:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wuninitialized] blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SASplitBlock': blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pgppop.c pgppop.c:309:4: warning: missing braces around initializer [-Wmissing-braces] pgppop.c:309:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] pgppop.c: In function 'DDV_WWW_get_CDS_minus': pgppop.c:578:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c:576:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'DDV_WWW_get_CDS_plus': pgppop.c:700:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'GetClrFromClrGlobal': pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c: In function 'DDV_DisplayTopScale': pgppop.c:1549:7: warning: unused variable 'szBlank' [-Wunused-variable] pgppop.c: In function 'DDV_GetBLASTCompLine_1': pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c: In function 'DDV_DisplayDefaultAlign': pgppop.c:3417:13: warning: unused variable 'sabp' [-Wunused-variable] pgppop.c: In function 'DDV_ShowSeqAlign': pgppop.c:3760:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable] pgppop.c:3758:10: warning: unused variable 'szPopSetName' [-Wunused-variable] pgppop.c: In function 'DDV_PrintPopSetSummary': pgppop.c:3931:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable] pgppop.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] pgppop.c:563:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function] pgppop.c:2090:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function] pgppop.c:2865:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function] pgppop.c:2912:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function] pgppop.c: In function 'DDV_PopDisplay2': pgppop.c:1246:23: warning: 'pgp2' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1253:14: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] pgppop.c: In function 'DDV_Print_Sequence': pgppop.c:1343:38: warning: 'idx' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1308:9: note: 'idx' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF samutil.c samutil.c: In function 'DDE_FreeStack': samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Add': samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point] samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Prev': samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Next': samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_ShowRow': samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_AddGapToEndOfAllRows': samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightAddNode': samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_LeftMergeAndAddNodeList': samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightMergeAndAddNodeList': samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_ShiftRightBoundaryLeft1': samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_CreateArraysForDenseSeg': samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_GetLastVNP': samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_GetNumResidues': samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcolor.c ddvcolor.c: In function 'DDV_GetColor': ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable] ddvcolor.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewmgr.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcreate.c ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces] ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1': ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2': ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2': ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable] ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_DisplayNewBLAST': ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4': ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ddvcreate.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function] ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function] ddvcreate.c: In function 'UAMgrIntUAMsg': ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:73: note: 'stop_middle' was declared here ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:60: note: 'start_middle' was declared here ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here ddvcreate.c: In function 'DDV_PopulateDisplayForDisc': ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'UABuildDescriptor2': ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_DumpSAPInAFile': ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_ReadSeqBin': ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jsavlt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF needleman.c needleman.c: In function 'NeedlemanWunschQuadraticByLoc': needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable] needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable] needleman.c: In function 'FetchSequenceByLoc': needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF txalign.c txalign.c: In function 'addLinkoutForDefline': txalign.c:706:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'addLinkoutForBioseq': txalign.c:774:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'load_align_sum_for_StdSeg': txalign.c:2748:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c: In function 'ShowAlignNodeText2Ex': txalign.c:3548:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable] txalign.c: In function 'Tx_PrintDefLine': txalign.c:4597:7: warning: unused variable 'seqid_length' [-Wunused-variable] txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath': txalign.c:5012:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] txalign.c:5016:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c:4718:10: warning: unused variable 'ColumnDistance' [-Wunused-variable] txalign.c:4710:43: warning: unused variable 'sip_list' [-Wunused-variable] txalign.c:4706:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFromSeqAlignEx': txalign.c:5335:25: warning: unused variable 't_adj' [-Wunused-variable] txalign.c:5334:29: warning: unused variable 'last_t_to' [-Wunused-variable] txalign.c: In function 'FSFPrintOneDefline': txalign.c:5443:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFunc': txalign.c:5660:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFShowSingleAlignment': txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6093:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFDisplayTraceBack1': txalign.c:6581:33: warning: unused variable 'st' [-Wunused-variable] txalign.c:6581:9: warning: unused variable 'tmp' [-Wunused-variable] txalign.c: In function 'OOFDisplayTraceBack2': txalign.c:6655:33: warning: unused variable 'st' [-Wunused-variable] txalign.c: In function 'FDGetTaxNamesFromBioseq': txalign.c:6757:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable] txalign.c: At top level: txalign.c:630:16: warning: 'getNameInitials' defined but not used [-Wunused-function] txalign.c:828:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function] txalign.c:2338:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function] txalign.c:3433:1: warning: 'get_seq_id' defined but not used [-Wunused-function] txalign.c: In function 'CreateMaskByteStore': txalign.c:940:4: warning: 'mol' may be used uninitialized in this function [-Wuninitialized] txalign.c:988:8: note: 'mol' was declared here txalign.c: In function 'OOFShowSingleAlignment.isra.6': txalign.c:6048:5: warning: 'dna_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6089:32: note: 'dna_line_start' was declared here txalign.c:6048:5: warning: 'pro_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6089:48: note: 'pro_line_start' was declared here txalign.c: In function 'find_score_in_align': txalign.c:2598:33: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2498:20: note: 'smtp' was declared here txalign.c:2462:11: warning: 't_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2394:23: note: 't_spp' was declared here txalign.c:2459:14: warning: 'm_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2394:16: note: 'm_spp' was declared here txalign.c: In function 'ShowAlignNodeText2Ex.isra.7': txalign.c:2284:11: warning: 'm_len' may be used uninitialized in this function [-Wuninitialized] txalign.c:3543:10: note: 'm_len' was declared here txalign.c: In function 'ShowTextAlignFromAnnot3': txalign.c:1244:13: warning: 'retval' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fdlobj.c fdlobj.c: In function 'BlastDefLineSetAsnRead': fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] fdlobj.c: In function 'BlastDefLineAsnRead': fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr2.c alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA': alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2CopySeg': alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA': alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2SetUnaln': alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2PrintSeqAlign': alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign': alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable] alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable] alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] alignmgr2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function] alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function] alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function] alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function] alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc': alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IndexLite': alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6099:27: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength': alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6177:15: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA': alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA': alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetAlnLength': alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6757:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5757:84: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:5808:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli': alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks': alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthBlockRange': alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow': alignmgr2.c:6909:40: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextLengthBit': alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange': alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7169:9: warning: 'aligncoords' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign': alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq': alignmgr2.c:7695:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetSubAlign': alignmgr2.c:8248:34: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2FillInUnaligned': alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alnread.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acerdapi.c acerdapi.c: In function 'DoesSeqStringMatchBsp': acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] acerdapi.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aceread.c aceread.c:134:12: warning: 's_IsGapChar' defined but not used [-Wunused-function] aceread.c:247:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function] aceread.c:276:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function] aceread.c:3308:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function] aceread.c: In function 's_ReadContig': aceread.c:1477:38: warning: 'linestring' may be used uninitialized in this function [-Wuninitialized] rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdentrez.c cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function] cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function] cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable] cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c: In function 'CdEntrezMergeTerm': cdentrez.c:2665:27: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdLinkUidList': cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdTermListByTerm': cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntrezFindTerm': cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntTLAddTerm': cdentrez.c:1895:33: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:1787:13: note: 'total' was declared here cdentrez.c: In function 'CdEntMedlineEntryListGet': cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdromlib.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdnewlib.c cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces] cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces] cdnewlib.c: In function 'cd3_CdDocAsnOpen': cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable] cdnewlib.c: In function 'CdDevice_Init': cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable] cdnewlib.c: At top level: cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function] cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function] cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function] cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function] cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable] cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable] cdnewlib.c: In function 'UnixFileGets': cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'trmncmp': cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wuninitialized] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function 'strncat', inlined from 'CdDevice_FileBuildPath.part.11' at cdnewlib.c:2679:12, inlined from 'CdDevice_FileBuildPath' at cdnewlib.c:2662:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.14' at cdnewlib.c:2751:10: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.14' at cdnewlib.c:2769:13: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] cdnewlib.c: In function 'UidIndex_Lookup': cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:1986:30: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'TrmIndex_Lookup': cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:12: warning: 'd' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:24: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF casn.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdconfig.c cdconfig.c: In function 'ChangeMedia': cdconfig.c:941:29: warning: statement with no effect [-Wunused-value] cdconfig.c:960:17: warning: statement with no effect [-Wunused-value] cdconfig.c: At top level: cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function] cdconfig.c: In function 'EntrezInfoMerge': cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentr.c objentr.c: In function 'DocSumAsnRead': objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable] objentr.c: At top level: objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function] objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function] objentr.c: In function 'EntrezInfoAsnRead': objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wuninitialized] objentr.c:241:17: note: 'div' was declared here objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wuninitialized] objentr.c:240:18: note: 'link' was declared here objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wuninitialized] objentr.c:239:19: note: 'fld' was declared here objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wuninitialized] objentr.c:238:18: note: 'tinf' was declared here objentr.c:856:16: warning: 'i' may be used uninitialized in this function [-Wuninitialized] objentr.c:824:7: note: 'i' was declared here rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibfiles.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibforms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewDialogTextWithFont': vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialTextWithFont': vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawing.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF picture.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF diagnost.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictur3d.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmouse.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF imagelst.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF treeview.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF shim3d.c shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable] shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable] shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable] shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable] shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable] shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable] shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable] shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable] shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable] shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable] shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable] shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable] shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable] shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable] shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable] shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable] shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable] shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable] shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable] shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable] shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable] shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable] shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable] shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable] shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable] shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable] shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable] shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable] shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable] shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable] shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a mv vibbutns.o vibbutns.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] mv vibbutns.o vibbutns.glo mv vibbutns.tmp vibbutns.o mv vibextra.o vibextra.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] mv vibextra.o vibextra.glo mv vibextra.tmp vibextra.o mv vibfiles.o vibfiles.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c mv vibfiles.o vibfiles.glo mv vibfiles.tmp vibfiles.o mv vibforms.o vibforms.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c mv vibforms.o vibforms.glo mv vibforms.tmp vibforms.o mv vibgroup.o vibgroup.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] mv vibgroup.o vibgroup.glo mv vibgroup.tmp vibgroup.o mv viblists.o viblists.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] mv viblists.o viblists.glo mv viblists.tmp viblists.o mv vibmenus.o vibmenus.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] mv vibmenus.o vibmenus.glo mv vibmenus.tmp vibmenus.o mv vibprmpt.o vibprmpt.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] mv vibprmpt.o vibprmpt.glo mv vibprmpt.tmp vibprmpt.o mv vibsbars.o vibsbars.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] mv vibsbars.o vibsbars.glo mv vibsbars.tmp vibsbars.o mv vibslate.o vibslate.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_Set3DColorMap': vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable] vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] mv vibslate.o vibslate.glo mv vibslate.tmp vibslate.o mv vibtexts.o vibtexts.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewDialogTextWithFont': vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialTextWithFont': vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value] mv vibtexts.o vibtexts.glo mv vibtexts.tmp vibtexts.o mv vibutils.o vibutils.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] mv vibutils.o vibutils.glo mv vibutils.tmp vibutils.o mv vibwndws.o vibwndws.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: At top level: vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function] mv vibwndws.o vibwndws.glo mv vibwndws.tmp vibwndws.o mv vibmain.o vibmain.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] mv vibmain.o vibmain.glo mv vibmain.tmp vibmain.o mv ncbidraw.o ncbidraw.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] mv ncbidraw.o ncbidraw.glo mv ncbidraw.tmp ncbidraw.o mv drawing.o drawing.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c mv drawing.o drawing.glo mv drawing.tmp drawing.o mv mapping.o mapping.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] mv mapping.o mapping.glo mv mapping.tmp mapping.o mv picture.o picture.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c mv picture.o picture.glo mv picture.tmp picture.o mv viewer.o viewer.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c mv viewer.o viewer.glo mv viewer.tmp viewer.o mv document.o document.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] mv document.o document.glo mv document.tmp document.o mv table.o table.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] mv table.o table.glo mv table.tmp table.o mv palette.o palette.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] mv palette.o palette.glo mv palette.tmp palette.o mv diagnost.o diagnost.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c mv diagnost.o diagnost.glo mv diagnost.tmp diagnost.o mv image.o image.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] mv image.o image.glo mv image.tmp image.o mv pictur3d.o pictur3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c mv pictur3d.o pictur3d.glo mv pictur3d.tmp pictur3d.o mv prim3d1.o prim3d1.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c mv prim3d1.o prim3d1.glo mv prim3d1.tmp prim3d1.o mv prim3d2.o prim3d2.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c mv prim3d2.o prim3d2.glo mv prim3d2.tmp prim3d2.o mv prim3d3.o prim3d3.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c mv prim3d3.o prim3d3.glo mv prim3d3.tmp prim3d3.o mv prim3d4.o prim3d4.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c mv prim3d4.o prim3d4.glo mv prim3d4.tmp prim3d4.o mv prim3d5.o prim3d5.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c mv prim3d5.o prim3d5.glo mv prim3d5.tmp prim3d5.o mv viewer3d.o viewer3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] mv viewer3d.o viewer3d.glo mv viewer3d.tmp viewer3d.o mv vibmouse.o vibmouse.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c mv vibmouse.o vibmouse.glo mv vibmouse.tmp vibmouse.o mv netscape.o netscape.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] mv netscape.o netscape.glo mv netscape.tmp netscape.o mv imagelst.o imagelst.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c mv imagelst.o imagelst.glo mv imagelst.tmp imagelst.o mv treeview.o treeview.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c mv treeview.o treeview.glo mv treeview.tmp treeview.o mv shim3d.o shim3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c shim3d.c: In function 'OGL_AddCylinder3D': shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable] shim3d.c: In function 'OGL_AddText3D': shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable] shim3d.c: In function 'OGL_Zoom_DragMA': shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable] shim3d.c: In function 'OGL_Hit': shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default] shim3d.c: In function 'write_row_callback': shim3d.c:2911:48: warning: 'end' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2911:48: warning: 'start' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'SetOGLFont': shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2322:28: warning: 'list' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3461:40: warning: 'pCz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:34: warning: 'pCy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:28: warning: 'pCx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:22: warning: 'pNz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:16: warning: 'pNy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:10: warning: 'pNx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3575:16: warning: 'Nx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3434:6: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] mv shim3d.o shim3d.glo mv shim3d.tmp shim3d.o mv odlbox.o odlbox.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] mv odlbox.o odlbox.glo mv odlbox.tmp odlbox.o rm -f libvibrantOGL.a ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo cp -p libvibrantOGL.a ../lib ranlib ../lib/libvibrantOGL.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accentr.c accentr.c: In function 'EntrezBiostrucGet': accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accutils.c rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawseq.c drawseq.c: In function 'AddFlatNodeSymbol': drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable] drawseq.c: In function 'AddAlignBlocks': drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'AddAlignFeature': drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable] drawseq.c: In function 'AddAlignmentMismatch': drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawRestrictionMap': drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable] drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawFeatures': drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawOneSeqLoc': drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable] drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'Label_GData': drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawEquivAlign': drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable] drawseq.c: In function 'load_align_label_rectangle': drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'PicForAlignNode': drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable] drawseq.c: At top level: drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function] drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotmatrx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fea2seg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fstyle.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg2.c smdlg2.c: In function 'Nlm_CreateDlgGroup': smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smtools.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF styleman.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stylemui.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF glbpic.c glbpic.c: In function 'label_linear_mark': glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable] glbpic.c: At top level: glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function] glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function] glbpic.c: In function 'get_circle_label_align': glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'label_circle_mark': glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2483:11: warning: 'first_left' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2473:10: warning: 'first_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'Draw_Global': glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wuninitialized] glbpic.c:1943:8: note: 'seglen' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF layout.c layout.c: In function 'LayoutNodeFlat': layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] layout.c: In function 'layout_uncompressed_group': layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutFeatNode': layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable] layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable] layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable] layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutAlignNode': layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable] layout.c: At top level: layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function] layout.c: In function 'layout_uncompressed_group': layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'GroupFeatNode': layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] layout.c:594:35: note: 'prev' was declared here layout.c: In function 'OrderCdsmRNA': layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wuninitialized] layout.c:940:15: note: 'm_missed' was declared here layout.c: In function 'LayoutFeatNode': layout.c:1447:7: warning: 'p_right' may be used uninitialized in this function [-Wuninitialized] layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wuninitialized] layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'LayoutAlignNode': layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2317:27: warning: 'cur_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saldist.c saldist.c: In function 'copy_string': saldist.c:1289:12: warning: value computed is not used [-Wunused-value] saldist.c:1302:11: warning: value computed is not used [-Wunused-value] saldist.c: In function 'nss_ref_complength': saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_pw_complength': saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_gp_complength': saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'SortbySimProc': saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable] saldist.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable] saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function] saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function] saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function] saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function] saldist.c: In function 'writematrixhalf.constprop.5': saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c: In function 'PwDistProc': saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c:1104:19: note: 'vnp' was declared here saldist.c: In function 'SortbyLenItem': saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wuninitialized] saldist.c:2172:28: note: 'mink' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saled.c saled.c: In function 'ReadAlignmentForSeqEntry': saled.c:3325:21: warning: unused variable 'dirty' [-Wunused-variable] saled.c:3321:21: warning: unused variable 'salp' [-Wunused-variable] saled.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salfiles.c salfiles.c: In function 'NewFastaRead': salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ReadAlignmentToStrings': salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable] salfiles.c: In function 'MacawRead': salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable] salfiles.c: In function 'ReadLocalAlign': salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ImportFromFile': salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable] salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable] salfiles.c: In function 'sesp_to_pept': salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable] salfiles.c: In function 'SaveFeatProc': salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'CCReadAnythingLoop': salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salfiles.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function] salfiles.c: In function 'CCDownloadProc': salfiles.c:2363:9: warning: 'new_sep' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'NewFastaRead.constprop.14': salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'GapFastaRead': salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wuninitialized] salfiles.c:654:16: note: 'seqstr' was declared here salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:660:16: note: 'startp' was declared here salfiles.c: In function 'ReadLocalAlignment': salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:1113:19: note: 'seqvnp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpanel.c salpanel.c: In function 'go_to_next_to_draw': salpanel.c:331:17: warning: statement with no effect [-Wunused-value] salpanel.c: In function 'next_to_draw': salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salpanel.c: In function 'AssociatePropagatedSubloc': salpanel.c:3131:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'FeaturePropagateForm': salpanel.c:4670:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] salpanel.c:4665:15: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'OkToContinueWithFeatureApply': salpanel.c:6099:14: warning: unused variable 'num_missing' [-Wunused-variable] salpanel.c: In function 'DoApplyFeatureToAlignment': salpanel.c:6215:31: warning: unused variable 'found_null' [-Wunused-variable] salpanel.c: In function 'ApplyFeatureToAlignment': salpanel.c:6417:31: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salpanel.c:65:14: warning: 'diamondSym' defined but not used [-Wunused-variable] salpanel.c:68:14: warning: 'ovalSym' defined but not used [-Wunused-variable] salpanel.c:77:14: warning: 'upTriSym' defined but not used [-Wunused-variable] salpanel.c:80:14: warning: 'downTriSym' defined but not used [-Wunused-variable] salpanel.c:86:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable] salpanel.c:89:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable] salpanel.c:98:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable] salpanel.c:101:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable] salpanel.c:104:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable] salpanel.c:107:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable] salpanel.c:110:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:113:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:224:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function] salpanel.c:5055:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function] salpanel.c: In function 'draw_feat.isra.16.part.17': salpanel.c:2183:13: warning: 'col1' may be used uninitialized in this function [-Wuninitialized] salpanel.c: In function 'on_draw': salpanel.c:2599:31: warning: 'draw_diff' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salparam.c salparam.c: In function 'mergelst': salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] salparam.c: In function 'unmergelst': salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'FormulaDialog': salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable] salparam.c: In function 'JK_NTPattern2Ex': salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotBtn': salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotDialog': salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotItem': salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'SelectSeqFunc': salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'HighlightSelectionFunc': salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'PropagateFeatureProc': salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable] salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable] salparam.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salparam.c: In function 'FileInProc': salparam.c:782:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] salparam.c: In function 'DotPlotBtn': salparam.c:1950:25: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsa.c salsa.c: In function 'SelectSubsProc': salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SetSeqInfo': salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable] salsa.c: In function 'SetupAlignDataSap': salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable] salsa.c: In function 'get_bestpos_formerge': salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable] salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CreateSeqAlignViewForm': salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable] salsa.c: In function 'AlgEditFunc': salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable] salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable] salsa.c: In function 'OldAlignmentEditor': salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAnnotAlignEditor': salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditor': salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignViewer': salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop': salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop2': salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop3': salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop4': salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'InsertSeqProc': salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable] salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignBestHit': salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignStartUpdate': salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable] salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable] salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable] salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable] salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CCNormalizeSeqAlignId': salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable] salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable] salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable] salsa.c: In function 'ValidateSeqAlignandACCEx': salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] salsa.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function] salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function] salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function] salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function] salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function] salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function] salsa.c: In function 'ExportFASTAForUnselectedUpdates': salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'ExportBadAlignments': salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SeqAlignBestHit.isra.3': salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'BioseqEditMsgFunc': salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wuninitialized] salsa.c:890:20: note: 'anp' was declared here salsa.c: In function 'DeleteProc': salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SkipThisWindowProc': salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqfltr.c seqfltr.c: In function 'FilterSeq': seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgraph.c seqgraph.c: In function 'EndPointDialogToEndPointValNode': seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'SeqLocGraphViewProc': seqgraph.c:1136:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'MarkPrims': seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'CutOffProc': seqgraph.c:1018:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgrphx.c seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function] seqgrphx.c: In function 'FilterMsgFunc': seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmtrx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpcc.c seqpcc.c: In function 'PCCProc': seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqanal.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aacomp.c aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqscrl.c seqscrl.c: In function 'SeqScrollDataFree': seqscrl.c:46:5: warning: value computed is not used [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valdlg.c valdlg.c: In function 'ClickRulesDoc': valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable] valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable] valdlg.c: In function 'UpdateRuleList': valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable] valdlg.c: In function 'SaveRuleChanges': valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable] valdlg.c: In function 'LaunchCommentRulesEditor': valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsm.c vsm.c: In function 'VSMAboutProc': vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrCreateMainWindow': vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrPopulateMain': vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMGatherPictProc': vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable] vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMAddPictureToEntity': vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmfile.c vsmfile.c: In function 'VSMGenericBinAsnOpen': vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMGenericFastaSave': vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMFastaProtSaveWithProduct': vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMSaveSetsAsFiles': vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmutil.c vsmutil.c: In function 'GetDocPosForError': vsmutil.c:1657:18: warning: variable 'val' set but not used [-Wunused-but-set-variable] vsmutil.c: At top level: vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function] vsmutil.c:1542:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function] vsmutil.c: In function 'ContinueProc': vsmutil.c:2157:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'SetVerbosityAndRepopulate': vsmutil.c:2198:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'RevalidateProc': vsmutil.c:2124:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'ClearValidateWindow': vsmutil.c:613:21: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'CreateValidateWindowExExEx': vsmutil.c:2521:23: warning: array subscript is above array bounds [-Warray-bounds] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvgraph.c udvgraph.c: In function 'UDV_click_item': udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable] udvgraph.c: In function 'UDV_SendBSPSelectMsg': udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_helixDNA': udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'draw_logo': udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_minus': udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_plus': udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_panel': udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable] udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable] udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable] udvgraph.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function] udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function] udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function] udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function] udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function] udvgraph.c: In function 'UDV_GetCurrentDispRange': udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_Draw_features': udvgraph.c:3203:23: warning: 'idx6' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3203:23: warning: 'idx5' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3196:11: warning: 'idx4' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:23: warning: 'idx3' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:23: warning: 'idx2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3182:12: warning: 'idx1' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_ClickProc': udvgraph.c:1458:21: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvopen.c udvopen.c: In function 'UDV_FileOpen': udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable] udvopen.c: In function 'UDV_CreateListBioseqDlg': udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress] udvopen.c: In function 'UDV_FOpenCancelProc': udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_analyze_SEP_for_open': udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_FOpenAcceptProc': udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvpanel.c udvpanel.c: In function 'UDV_GotoBtnProc': udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable] udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'CreateMainControls': udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'UDV_SearchFeatForKey': udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvpanel.c: At top level: udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function] udvpanel.c: In function 'InitFeaturesListDlg': udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotvibrant.c dotvibrant.c: In function 'DOT_DisplayHits': dotvibrant.c:564:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VscrlProc': dotvibrant.c:918:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HscrlProc': dotvibrant.c:972:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VCrossHairs': dotvibrant.c:1402:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_HCrossHairs': dotvibrant.c:1427:9: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_MoveCrossHairs': dotvibrant.c:1453:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c:1452:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawXAxis': dotvibrant.c:1532:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawYAxis': dotvibrant.c:1642:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c:1641:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVDisplayDiags': dotvibrant.c:1770:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1770:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1766:22: warning: variable 'width' set but not used [-Wunused-but-set-variable] dotvibrant.c:1765:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1765:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1762:28: warning: unused variable 'cutoff' [-Wunused-variable] dotvibrant.c:1760:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillNewSeqBufs': dotvibrant.c:2197:19: warning: unused variable 'alp' [-Wunused-variable] dotvibrant.c: In function 'DOT_InitCInfo': dotvibrant.c:2258:14: warning: unused variable 'colBuf' [-Wunused-variable] dotvibrant.c: In function 'DOT_SVDisplaySequence': dotvibrant.c:2379:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable] dotvibrant.c:2367:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable] dotvibrant.c:2364:14: warning: unused variable 'prot_threshold' [-Wunused-variable] dotvibrant.c:2350:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVClickProc': dotvibrant.c:2807:17: warning: unused variable 'handled' [-Wunused-variable] dotvibrant.c: In function 'DOT_ResizeFeatWindow': dotvibrant.c:3016:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3016:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3016:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeSequenceWindow': dotvibrant.c:3098:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable] dotvibrant.c:3098:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable] dotvibrant.c:3095:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HideFeatDlg': dotvibrant.c:3745:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVBuildDiagViewer': dotvibrant.c:4031:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable] dotvibrant.c:4029:28: warning: unused variable 'str2' [-Wunused-variable] dotvibrant.c:4029:13: warning: unused variable 'str1' [-Wunused-variable] dotvibrant.c:4022:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:4022:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_UpdateDataRects': dotvibrant.c:4166:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable] dotvibrant.c:4166:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_MsgFunc': dotvibrant.c:4215:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ReleaseProc': dotvibrant.c:4373:32: warning: unused variable 'yaxis_incr' [-Wunused-variable] dotvibrant.c:4373:15: warning: unused variable 'xaxis_incr' [-Wunused-variable] dotvibrant.c:4371:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable] dotvibrant.c:4370:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_StartDOTPLOT': dotvibrant.c:4891:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_DoZoom': dotvibrant.c:5106:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ZoomProc': dotvibrant.c:5204:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'AlnMgr2GetNextLine': dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value] dotvibrant.c: In function 'DOT_GetAlign': dotvibrant.c:5332:44: warning: variable 'n' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillAlignInfoPointer': dotvibrant.c:5565:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer': dotvibrant.c:5681:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c:5680:16: warning: unused variable 'numsaps' [-Wunused-variable] dotvibrant.c:5678:37: warning: unused variable 'sap_tmp' [-Wunused-variable] dotvibrant.c: In function 'DOT_DoBlast': dotvibrant.c:5918:23: warning: unused variable 'eval' [-Wunused-variable] dotvibrant.c:5917:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] dotvibrant.c:5915:23: warning: unused variable 'entityID' [-Wunused-variable] dotvibrant.c: In function 'DOT_CreateWindowDetails': dotvibrant.c:6214:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:6214:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c:6207:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeMainWindow': dotvibrant.c:6273:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FindAlignment': dotvibrant.c:6662:29: warning: unused variable 'rb_fixed' [-Wunused-variable] dotvibrant.c:6662:13: warning: unused variable 'lt_fixed' [-Wunused-variable] dotvibrant.c:6661:17: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs': dotvibrant.c:6792:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_OrganizeAlnsInSet': dotvibrant.c:6873:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable] dotvibrant.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotvibrant.c:2760:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function] dotvibrant.c:2954:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function] dotvibrant.c:3318:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function] dotvibrant.c:3688:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function] dotvibrant.c:4213:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function] dotvibrant.c:4749:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function] dotvibrant.c:4767:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function] dotvibrant.c:5281:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function] dotvibrant.c:5325:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function] dotvibrant.c:5894:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function] dotvibrant.c:6346:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function] dotvibrant.c:6642:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function] dotvibrant.c: In function 'DOT_GetNthSeqFromAlign': dotvibrant.c:5072:11: warning: 'spp' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer': dotvibrant.c:2611:32: warning: 'strand2' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2380:23: note: 'strand2' was declared here dotvibrant.c:2611:32: warning: 'strand1' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2380:14: note: 'strand1' was declared here dotvibrant.c:2583:37: warning: 'residue_names' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2378:16: note: 'residue_names' was declared here dotvibrant.c:2611:32: warning: 's_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:42: note: 's_pos' was declared here dotvibrant.c:2611:32: warning: 'q_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:35: note: 'q_pos' was declared here dotvibrant.c:2504:11: warning: 'hit_stop' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:25: note: 'hit_stop' was declared here dotvibrant.c:2614:32: warning: 'hit_start' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:14: note: 'hit_start' was declared here dotvibrant.c:2503:16: warning: 'buf_len' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:21: note: 'buf_len' was declared here dotvibrant.c:2545:18: warning: 'is_na' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2361:27: note: 'is_na' was declared here dotvibrant.c:2503:6: warning: 's' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2357:14: note: 's' was declared here dotvibrant.c:2626:16: warning: 'q' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2356:14: note: 'q' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil1.c dlgutil1.c: In function 'IsAuthList': dlgutil1.c:3008:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'TestAuthorDialog': dlgutil1.c:3357:20: warning: unused variable 'cp' [-Wunused-variable] dlgutil1.c: In function 'TestIntervalEditor': dlgutil1.c:5318:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable] dlgutil1.c:5317:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable] dlgutil1.c:5316:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'CreateStandardEditMenu': dlgutil1.c:9189:8: warning: variable 'i' set but not used [-Wunused-but-set-variable] dlgutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dlgutil1.c:8061:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function] dlgutil1.c:8378:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil2.c dlgutil2.c: In function 'CreateImportFields': dlgutil2.c:1401:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars': dlgutil2.c:3532:11: warning: variable 'y' set but not used [-Wunused-but-set-variable] dlgutil2.c:3532:8: warning: variable 'x' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetTableDisplayCell': dlgutil2.c:3931:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'NewCreateInferenceDialog': dlgutil2.c:7600:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'ClickableListOnKey': dlgutil2.c:10202:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetSelectedClickableListText': dlgutil2.c:10874:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'AutomatchFeatures': dlgutil2.c:13840:36: warning: variable 's3' set but not used [-Wunused-but-set-variable] dlgutil2.c: At top level: dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function] dlgutil2.c:8577:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function] dlgutil2.c:10039:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:10059:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:11993:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2trmlst.c e2trmlst.c: In function 'ReadAFew': e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2docsum.c e2docsum.c: In function 'FormatCdsSeq': e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'FetchSequence': e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable] e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SaveDocsumProject': e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'RetrieveGeneration': e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SetupMenus': e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable] e2docsum.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable] e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function] e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function] e2docsum.c: In function 'LaunchStructureViewer': e2docsum.c:2981:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] e2docsum.c: In function 'LaunchSequin': e2docsum.c:2838:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2graphic.c asn2graphic.c: In function 'ParseFilterItem': asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GeneProductsLayoutInternal': asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'ScaleSntDrawProc': asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GphSentProc': asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] asn2graphic.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2graphic.c: In function 'ProcessRows': asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF medview.c medview.c: In function 'PrintMedlineViewForm': medview.c:588:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bspview.c ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfview.c gbfview.c: In function 'RelModeFailText': gbfview.c:1004:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFlatFile': gbfview.c:1289:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFasta': gbfview.c:1714:33: warning: left-hand operand of comma expression has no effect [-Wunused-value] gbfview.c:1646:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateAsnOrXML': gbfview.c:1969:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable] gbfview.c:1968:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable] gbfview.c: At top level: gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function] gbfview.c:944:13: warning: 'LookForPubs' defined but not used [-Wunused-function] gbfview.c:1212:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function] gbfview.c:1231:13: warning: 'LookForFarProds' defined but not used [-Wunused-function] gbfview.c: In function 'ReleaseIcon': gbfview.c:667:28: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gbfview.c: In function 'PrintFlatFileFastaOrAsn': gbfview.c:2491:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphview.c gphview.c: In function 'ReleaseAlignment': gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DrawAlignOnAllSequences': gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable] gphview.c: In function 'ReleaseDesktop': gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable] gphview.c: In function 'AutoScrollGeneName': gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DisplayGeneChoiceWindow': gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable] gphview.c: In function 'PrintGraphical': gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable] gphview.c: In function 'PopulateAsn2GphGraphic': gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphdraw.c gphdraw.c: In function 'GraphSentProc': gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] gphdraw.c: In function 'DrawGraphToPanel': gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gxydraw.c gxydraw.c: In function 'DotXYPlot': gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wuninitialized] gxydraw.c:182:19: note: 'xaxiscount' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gtrdraw.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpanel.c seqpanel.c: In function 'FillFeatureInfo': seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeatureCodonLines': seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeature': seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'GetSeqChapterFeatureInfo': seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel': seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintFeature': seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable] seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintTranslatedFrame': seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ExportSequenceText': seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign] ../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr' seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable] seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqAlnOnDrag': seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable] seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ResizeSeqEdView': seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable] seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx': seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'WriteAlignmentContiguousToFile': seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'ReverseSequenceStrandsInAlignment': seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable] seqpanel.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function] seqpanel.c: In function 'SeqEdFindPatternDialog': seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'PrintFeature': seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:3810:21: note: 'str_prot' was declared here seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'SeqEdExportProc': seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:4233:17: note: 'seq_pos' was declared here seqpanel.c: In function 'onDrawSeqPanel': seqpanel.c:1252:29: warning: 'alnbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:33: note: 'alnbuf' was declared here seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:25: note: 'seqbuf' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingengraph.c ingengraph.c: In function 'Ing_BigEncodeIdxFeat': ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage': ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable] ingengraph.c: In function 'Ing_AddAlignsToOverviewPage': ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_DrawOverviewPage': ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable] ingengraph.c:488:14: warning: unused variable 'Nlm_Visible' [-Wunused-variable] ingengraph.c: In function 'Ing_PopOverviewPage': ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable] ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable] ingengraph.c: In function 'Ing_PopDetailedPage': ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_ExploreSegments': ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable] ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable] ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable] ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_AddGCRect': ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable] ingengraph.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function] ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function] ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenext.c ingenext.c: In function 'Ing_KeepTheBestAlignments': ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_HandleQBlastResults': ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_HandleResults': ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_AccepttRNAargsProc': ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable] ingenext.c: In function 'Ing_tRNAscanProc': ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable] ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable] ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable] ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable] ingenext.c: In function 'Ing_ReadtRNAConfigFile': ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_CreateDotMatrixForm': ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_RunSpidey': ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable] ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable] ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable] ingenext.c: In function 'Ing_ReadmRNAs_ext': ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_DeleteInsertInGenomic': ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable] ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable] ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable] ingenext.c: In function 'Ing_PrintSpideyReport': ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PrintBlastReport': ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable] ingenext.c:3850:18: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PopulateReport': ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable] ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable] ingenext.c: In function 'Ing_ResizeReportWindow': ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenext.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function] ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable] ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReportClickProc': ingenext.c:4287:21: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] ingenext.c:4262:22: note: 'nmismatches' was declared here ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c:3197:34: warning: 'mstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2681:13: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenwin.c ingenwin.c: In function 'Ing_PopulateDetailedPage': ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable] ingenwin.c: In function 'Ing_DoRange': ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateCpG': ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeCpGWindow': ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateMotif': ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable] ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeMotifWindow': ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable] ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ShowComplexity': ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] ingenwin.c: In function 'Ing_CreateNewFeature': ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable] ingenwin.c: In function 'Ing_GetAlignmentIntervals': ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldGetAlignmentIntervals': ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldMakeLocListFromSAP': ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable] ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable] ingenwin.c: In function 'Ing_OM_MsgFunc': ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress] ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable] ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable] ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable] ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable] ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable] ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable] ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable] ingenwin.c: In function 'Ing_MoveCursor': ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_FeatViewerClickProc': ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_SequenceClickProc': ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ReadInBlastAsn': ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable] ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable] ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable] ingenwin.c: In function 'Ing_ParseSeqIdFile': ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInFeatureTable': ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_AssembleGenscanInfo': ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInGenscan': ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable] ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable] ingenwin.c: In function 'Ing_AssembleTabDelimited': ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable] ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInTabDelimited': ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable] ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable] ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenMain': ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable] ingenwin.c: In function 'Ing_ResizeMainWindow': ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_OpenFromFileORNetwork': ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_EditFeature': ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_MarkSeqAnnot': ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable] ingenwin.c: In function 'Ing_CreateMismatchedDialog': ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain] ingenwin.c: In function 'Ing_PropagateClickProc': ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable] ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable] ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable] ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable] ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable] ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable] ingenwin.c: In function 'Ing_PrintCompProteins': ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable] ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable] ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable] ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_DoPropagate': ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable] ingenwin.c: In function 'Ing_GetFromNetwork': ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c: In function 'Ing_SetupMainWindow': ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable] ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable] ingenwin.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function] ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function] ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function] ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function] ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function] ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function] ingenwin.c: In function 'Ing_ReplaceMismatchedProc': ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:5137:17: note: 'j' was declared here ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3290:12: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:3255:17: note: 'strand' was declared here ingenwin.c: In function 'Ing_KozakProc': ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_SignalPeptideProc': ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_RepeatsProc': ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PolyAProc': ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_CpGProc': ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macrodlg.c macrodlg.c: In function 'CloseMacroEditorWindowProc': macrodlg.c:99:11: warning: unused variable 'do_remove' [-Wunused-variable] macrodlg.c: In function 'ExistingTextDialog': macrodlg.c:1908:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceQualChoiceDialog': macrodlg.c:3725:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable] macrodlg.c:3725:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3725:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3725:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceConstraintDialog': macrodlg.c:3963:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3963:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3963:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'CDSGeneProtQualConstraintDialog': macrodlg.c:4277:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:4277:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:4277:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'FeatureFieldTypeFromComplexConstraintType': macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_seqid' not handled in switch [-Wswitch] macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_string' not handled in switch [-Wswitch] macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_loc' not handled in switch [-Wswitch] macrodlg.c: In function 'TestApplyActionDialog': macrodlg.c:12680:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestEditActionDialog': macrodlg.c:12854:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestRemoveOutsideActionDialog': macrodlg.c:13012:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'AddMacroActions': macrodlg.c:19633:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'PointerToSampleDialog': macrodlg.c:19769:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SampleDialogCopy': macrodlg.c:19889:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable] macrodlg.c:19889:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SingleMacroAcceptButton': macrodlg.c:21177:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable] macrodlg.c:21177:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'LaunchMacroTemplateEditor': macrodlg.c:22877:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable] macrodlg.c: At top level: macrodlg.c:9778:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function] macrodlg.c: In function 'ApplyProductUpdateTableBtn': macrodlg.c:26278:15: warning: 'lip' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'RemoveSequencesActionDialog': macrodlg.c:6490:15: warning: 'p' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'ActionToSingleMacroActionForm': macrodlg.c:21387:6: warning: 'val' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'BuildEditMacroActionWindow': macrodlg.c:15004:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wuninitialized] macrodlg.c:14910:47: note: 'indexer_only_group' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF biosrc.c biosrc.c: In function 'CreateBioSourceDialog': biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable] biosrc.c: At top level: biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function] biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function] biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function] biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function] biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdrgn.c cdrgn.c: In function 'ProductToSeqLocPtr': cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CreateCodeBreakAlist': cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog': cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'PopulateAAPopup': cdrgn.c:7044:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: At top level: cdrgn.c:2174:13: warning: 'AccessionToGi' defined but not used [-Wunused-function] cdrgn.c:6253:14: warning: 'check_rna_type' defined but not used [-Wunused-function] cdrgn.c:6330:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function] cdrgn.c:6773:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function] cdrgn.c:6792:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function] cdrgn.c:6854:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF import.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pubdesc.c pubdesc.c: In function 'SetPubdescImportExportItems': pubdesc.c:2859:37: warning: comparison between pointer and integer [enabled by default] pubdesc.c: In function 'MakeReplaceAuthorsForm': pubdesc.c:4289:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable] pubdesc.c: In function 'DisplayDocSum': pubdesc.c:4851:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable] pubdesc.c: At top level: pubdesc.c:5363:13: warning: 'Quit' defined but not used [-Wunused-function] pubdesc.c:5099:14: warning: 'AddAll' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsub.c seqsub.c: In function 'SeqSubmitFromTemplateEditor': seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapgene.c mapgene.c: In function 'load_new_align': mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'figure_loc_by_position': mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'cvt_loc_for_single_gene': mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable] mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable] mapgene.c: In function 'print_header_for_center': mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'PrintGeneticMarkerForOneMap': mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: At top level: mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function] mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function] mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function] mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function] mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function] mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function] mapgene.c: In function 'PrintContigForOneMap': mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wuninitialized] mapgene.c:3152:7: note: 'yac_num' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtgene.c prtgene.c: In function 'print_store_for_html': prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable] rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvclick.c ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD': ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_SendBSPSelectMsg': ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_DragProc': ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: In function 'DDV_HoldProc': ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable] ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function] ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function] ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function] ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function] ddvclick.c: In function 'DDV_GetSeqNameGivenRow': ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] ddvclick.c: In function 'DDV_SendBSPSelectMsg.constprop.4': ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvgraph.c ddvgraph.c: In function 'DDV_DrawSequence': ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable] ddvgraph.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvopen.c ddvopen.c: In function 'DDV_GetAndCheckSeqAlign': ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_FOpenAcceptProc': ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_NetOpen_okProc': ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_ImportBioseqDlg': ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_HideDlg': ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function] ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function] ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvpanel.c ddvpanel.c: In function 'DDV_CreateViewerPanel': ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] ddvpanel.c: In function 'DDV_DispStyles_OkProc': ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable] ddvpanel.c: In function 'DDV_ExportTexte': ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable] ddvpanel.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function] ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function] ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function] ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function] ddvpanel.c: In function 'DDVExportTexteOkProc': ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wuninitialized] ddvpanel.c: In function 'DDV_SortPGPLineNum': ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF corematx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dvncode.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb1.c objmmdb1.c: In function 'BiostrucAsnRead': objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdFree': objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdAsnRead': objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucSetAsnRead': objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucAnnotSetAsnRead': objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead': objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrFree': objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucHistoryAsnRead': objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucReplaceAsnRead': objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree': objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucSourceAsnRead': objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead': objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphAsnRead': objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrFree': objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphAsnRead': objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'MoleculeGraphAsnRead': objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'InterResidueBondAsnRead': objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueAsnRead': objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphPntrFree': objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'ResidueGraphPntrAsnRead': objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphPntrAsnRead': objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead': objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomAsnRead': objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'IntraResidueBondAsnRead': objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ChiralCenterAsnRead': objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrAsnRead': objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrSetAsnRead': objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: At top level: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb2.c objmmdb2.c: In function 'BiostrucModelAsnRead': objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrFree': objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ModelSpaceAsnRead': objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Coordinates_coordinatesFree': objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Coordinates_coordinatesAsnRead': objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ReferenceFrameAsnRead': objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'CoordinatesFree': objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicCoordinatesAsnRead': objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Surface_surfaceFree': objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Surface_surfaceAsnRead': objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'DensityCoordinatesAsnRead': objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelSpacePointsAsnRead': objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsFree': objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicOccupanciesAsnRead': objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AlternateConformationIdsAsnRead': objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ConformationEnsembleAsnRead': objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead': objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead': objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TMeshAsnRead': objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TrianglesAsnRead': objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:1761:10: note: 'choice' was declared here objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:828:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb3.c objmmdb3.c: In function 'BiostrucFeatureSetAsnRead': objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphPntrsFree': objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AtomPntrsAsnRead': objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphAlignmentAsnRead': objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphInteractionAsnRead': objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'SphereAsnRead': objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ConeAsnRead': objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CylinderAsnRead': objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BrickAsnRead': objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransformAsnRead': objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureSetDescrFree': objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Location_locationFree': objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Property_propertyFree': objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ColorPropAsnRead': objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CameraAsnRead': objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptAsnRead': objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionSimilarityAsnRead': objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'OtherFeatureAsnRead': objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead': objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoleculePntrsAsnRead': objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead': objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueIntervalPntrAsnRead': objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionCoordinatesAsnRead': objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionBoundaryFree': objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AlignStatsAsnRead': objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RealValueAsnRead': objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ModelSpacePointAsnRead': objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoveFree': objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RotMatrixAsnRead': objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransMatrixAsnRead': objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'GLMatrixAsnRead': objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptStepAsnRead': objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb3.c: In function 'MoveAsnRead': objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionBoundaryAsnRead': objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead': objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'ChemGraphPntrsAsnRead': objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:3401:10: note: 'choice' was declared here objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:2303:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcn3d.c objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead': objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead': objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dColorAsnRead': objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneStyleAsnRead': objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dGeneralStyleAsnRead': objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead': objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsAsnRead': objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead': objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dStyleTableItemAsnRead': objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dResidueRangeAsnRead': objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead': objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dObjectLocationAsnRead': objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationAsnRead': objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dGLMatrixAsnRead': objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dVectorAsnRead': objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dViewSettingsAsnRead': objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi.c mmdbapi.c: In function 'MakeAModelstruc': mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable] mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable] mmdbapi.c: In function 'AddPFBSelect': mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c mmdbapi1.c: In function 'FreeAtomicModelAsnLists': mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable] mmdbapi1.c: In function 'FetchBS': mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable] mmdbapi1.c: In function 'FreeSurfaceModelAsnList': mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'MakeChemGraphNodeList': mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoApplyTransform': mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoReverseTransform': mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable] mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'fnPBSFtoPSA': mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'InstallAlignedSlave': mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAddFeature': mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAsnGet': mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c mmdbapi2.c: In function 'GetAtomLocs': mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi2.c: In function 'AssignAtomLocId': mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignBackBone': mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignVirtual': mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignIons': mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'MolFromPDBChain': mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'SeqStringFromMol': mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c mmdbapi3.c: In function 'WritePDBHeader': mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi3.c: In function 'WritePDBRemarks': mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable] mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable] mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable] mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable] mmdbapi3.c: In function 'WritePDBConnect': mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WritePDBModelList': mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable] mmdbapi3.c: In function 'WriteFASTAMolecule': mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c mmdbapi4.c: In function 'RefreshSurface': mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable] mmdbapi4.c: In function 'FreeCoordinatesAsnLists': mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable] mmdbapi4.c: In function 'FreeRedundantAsn': mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable] mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c: In function 'RefreshModelAsnMem': mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable] mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable] mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable] mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable] mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable] mmdbapi4.c: In function 'RebuildChemGraphAsn': mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable] mmdbapi4.c: In function 'WriteASNChemGraphOnly': mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable] mmdbapi4.c: In function 'FreeSingleModel': mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable] mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable] mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable] mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable] mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable] mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wuninitialized] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vastsubs.c vastsubs.c: In function 'LoadSubsetTable': vastsubs.c:212:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:239:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:258:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:287:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:296:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:302:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prunebsc.c prunebsc.c: In function 'PruneFeatureSet': prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneModel': prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneBiostruc': prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:173:8: note: 'mtype' was declared here prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:171:47: note: 'currenthet' was declared here prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:102:8: note: 'mtype' was declared here prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:100:38: note: 'currentbp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcdd.c objcdd.c: In function 'CddIdFree': objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddIdAsnRead': objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnRead': objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnWrite': objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddAsnRead': objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddSetAsnRead': objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddSetAsnWrite': objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeAsnRead': objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnRead': objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnWrite': objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnRead': objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnWrite': objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddProjectAsnRead': objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddOrgRefAsnRead': objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnRead': objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnWrite': objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrFree': objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddPrefNodeDescrAsnRead': objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnRead': objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite': objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'GlobalIdAsnRead': objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddRepeatAsnRead': objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddBookRefAsnRead': objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnRead': objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnWrite': objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'MatrixAsnRead': objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'TriangleAsnRead': objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentFree': objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentAsnRead': objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'UpdateAlignAsnRead': objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnRead': objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnWrite': objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'FeatureEvidenceFree': objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'FeatureEvidenceAsnRead': objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlignAnnotAsnRead': objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'AlignAnnotSetAsnRead': objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'AlignAnnotSetAsnWrite': objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'DomainParentAsnRead': objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SequenceTreeAsnRead': objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlgorithmTypeAsnRead': objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SeqTreeNodeAsnRead': objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'Children_footprintAsnRead': objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'NodeAnnotationAsnRead': objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerRectAsnRead': objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerAsnRead': objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddScriptAsnRead': objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objcdd.c: In function 'CddDescrAsnRead': objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddutil.c cddutil.c: In function 'CddGetPmIds': cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable] cddutil.c: In function 'CddGetAnnotNames': cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCheckForRepeats': cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress] cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg': cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable] cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'SeqAlignInform': cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddAlignInform': cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPssmInform': cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPosFreqInform': cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComputation': cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposComputation': cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddRetrieveBioseqById': cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable] cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable] cddutil.c: In function 'CddConsensus': cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposCompPart1': cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddGetNewIndexForThreading': cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable] cddutil.c: In function 'CddCposComp': cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDumpTaxLinks': cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable] cddutil.c: At top level: cddutil.c:6267:1: warning: "/*" within comment [-Wcomment] ../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable] ../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] cddutil.c: In function 'CddBioseqCopy': cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCopyMSLDenDiag': cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCalculateTriangle': cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wuninitialized] cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddposutil.c cddposutil.c: In function 'CddfindThreshSequences': cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddfindDenseDiagThreshSequences': cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddposFreqsToMatrix': cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] cddposutil.c: In function 'CddposDenseDiagDemographics': cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable] cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable] cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable] cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable] cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchInternalByLoc': cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable] cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable] cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable] cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable] cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable] cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable] cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable] cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable] cddposutil.c: In function 'CddposReadAlignment': cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable] cddposutil.c: At top level: ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function] cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function] cddposutil.c: In function 'CddposComputeSequenceWeights': cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:832:68: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddposDemographics': cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:1246:63: note: 'min_query_length' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmime.c objmime.c: In function 'NcbiMimeAsn1Free': objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataFree': objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataAsnRead': objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BiostrucAlignAsnRead': objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucAlignSeqAsnRead': objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqAsnRead': objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAsnRead': objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataFree': objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead': objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BundleSeqsAlignsAsnRead': objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:516:10: note: 'choice' was declared here objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:1719:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF strucapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdalgs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdatd.c thrdatd.c: In function 'atd': thrdatd.c:201:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable] thrdatd.c:198:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable] thrdatd.c:188:14: warning: unused variable 'm' [-Wunused-variable] thrdatd.c:188:12: warning: unused variable 'l' [-Wunused-variable] thrdatd.c:171:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable] thrdatd.c:170:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c thrdbwfi.c: In function 'bwfi': thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wuninitialized] thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpal.c thrdcpal.c: In function 'cpal': thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpll.c thrdcpll.c: In function 'cpll': thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type] thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcprl.c thrdcprl.c: In function 'cprl': thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcxei.c thrdcxei.c: In function 'cxei': thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable] thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrddgri.c thrddgri.c: In function 'g': thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsal0.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalu.c thrdsalu.c: In function 'salu': thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c thrdsgoi.c: In function 'sgoi': thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslo0.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslor.c thrdslor.c: In function 'slor': thrdslor.c:68:5: warning: 'mp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslou.c thrdslou.c: In function 'slou': thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspci.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspea.c thrdspea.c: In function 'spea': thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspel.c thrdspel.c: In function 'spel': thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspni.c thrdspni.c: In function 'spni': thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttb0.c thrdttb0.c: In function 'ttb0': thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttbi.c thrdttbi.c: In function 'ttbi': thrdttbi.c:124:3: warning: 'sm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdzsc.c thrdzsc.c: In function 'zsc': thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable] thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable] thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable] thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable] thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable] thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type] thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tls' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tlf' may be used uninitialized in this function [-Wuninitialized] rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF csim.c csim.c: In function 'set_pam_200': csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces] csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'set_pam_file': csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'big_pass': csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'diff1': csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:893:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'locate': csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1144:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'small_pass': csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'display': csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] csim.c: In function 'set_pam_file': csim.c:227:18: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] csim.c: In function 'SIM': csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wuninitialized] csim.c:928:23: note: 'dj' was declared here csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wuninitialized] csim.c:928:19: note: 'di' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF db_slist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust.c dust.c: In function 'slpDust.isra.0': dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dust.c blast_dust.c: In function 's_SlpDust': blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF falign.c falign.c: In function 'fbld_table': falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bbld_table': falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rcbld_table': falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'ex_table': falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'free_all': falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'scan': falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'fscan': falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bscan': falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rfscan': falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'trcscan': falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rclocal': falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'enterS': falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'local': falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'align': falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'calign': falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'malign': falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF g_any.c g_any.c: In function 'k_align': g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: In function 'z_ALIGN': g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable] g_any.c: In function 'CHECK_SCORE': g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: At top level: g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable] g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable] g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim2.c sim2.c: In function 'SIM2': sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable] sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim3.c sim3.c: In function 'locate': sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c: At top level: sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function] sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function] sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function] sim3.c: In function 'locate': sim3.c:230:17: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim3.c:229:6: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim4.c sim4.c: In function 'sim4x': sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sim4.c: In function 'greedy': sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c: In function 'DISPLAY': sim4.c:2625:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sim4.c: At top level: sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function] sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function] sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim4.c: In function 'locate': sim4.c:2919:19: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim4.c:2918:7: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] sim4.c: In function 'sim4x': sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:18: note: 'forth' was declared here sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:12: note: 'back' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simutil.c simutil.c: In function 'make_align': simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable] simutil.c: At top level: simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function] simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function] simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF slist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sec.c sec.c: In function 'Region': sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:504:11: warning: 'old_l' may be used uninitialized in this function [-Wuninitialized] sec.c:494:13: warning: 'ppj' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'ppi' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'pi' may be used uninitialized in this function [-Wuninitialized] sec.c:513:13: warning: 'ej' may be used uninitialized in this function [-Wuninitialized] sec.c:400:8: warning: 'ei' may be used uninitialized in this function [-Wuninitialized] sec.c:511:13: warning: 'bj' may be used uninitialized in this function [-Wuninitialized] sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'RB' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'LB' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tfuns.c tfuns.c: In function 'find_orf': tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable] tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable] tfuns.c: At top level: tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toasn3.c toasn3.c: In function 'FindOrg': toasn3.c:1311:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQualsWithComm': toasn3.c:1592:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQuals': toasn3.c:1629:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CountSourceFeat': toasn3.c:2415:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toasn3.c:2406:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'TASNTrimInternalSemicolons': toasn3.c:3986:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'ImpFeatToProtRef': toasn3.c:4672:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'RemovePeptideImpFeats': toasn3.c:4967:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] toasn3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] toasn3.c:1572:16: warning: 'GetQualValue' defined but not used [-Wunused-function] toasn3.c: In function 'GetOriginalBeforeAdjustment': toasn3.c:4185:29: warning: 'last' may be used uninitialized in this function [-Wuninitialized] toasn3.c: In function 'FixNucProtSet': toasn3.c:2058:21: warning: 'bseg' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toporg.c toporg.c: In function 'ChkSegset': toporg.c:62:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c:61:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toporg.c:58:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toporg.c:53:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'ChkNucProt': toporg.c:594:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBSfromParts': toporg.c:1280:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable] toporg.c:1279:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable] toporg.c:1278:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'MapsToGenref': toporg.c:1944:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable] toporg.c:1939:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable] toporg.c: In function 'FindOldLineage': toporg.c:2521:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBadTitleFromProteinProducts': toporg.c:4968:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable] toporg.c: At top level: toporg.c:3010:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function] toporg.c: In function 'MergeEquivCitSubs': toporg.c:3831:16: warning: 'csp1' may be used uninitialized in this function [-Wuninitialized] toporg.c: In function 'CheckMaps': toporg.c:1715:11: warning: 'to' may be used uninitialized in this function [-Wuninitialized] toporg.c:1696:24: note: 'to' was declared here toporg.c:1714:13: warning: 'from' may be used uninitialized in this function [-Wuninitialized] toporg.c:1696:18: note: 'from' was declared here toporg.c: In function 'ConvertSegSetToDeltaSeq': toporg.c:6566:29: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pobutil.c pobutil.c: In function 'build_repeat_feat': pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable] pobutil.c: In function 'merge_StdSeg': pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable] pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable] pobutil.c: In function 'AluFeat': pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2380:8: /usr/include/arm-linux-gnueabihf/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2381:8: /usr/include/arm-linux-gnueabihf/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stsutil.c stsutil.c: In function 'InitSTSSearch_r': stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable] stsutil.c: In function 'GetSTSEntry': stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable] stsutil.c: In function 'STSCalculateHash': stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'STSReverse': stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'InitHashTable': stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable] stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable] stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable] stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable] stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable] stsutil.c: At top level: stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggadj.c suggadj.c: In function 'score_possible_splice_sites': suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'check_split_codon': suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'overlapping_fixer': suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggest.c suggest.c: In function 'get_frames': suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c: At top level: suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function] suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggslp.c suggslp.c: In function 'MakeReverseSequence': suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast.c blast.c: In function 'BlastReevaluateWithAmbiguities': blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable] blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastGetVirtualOIDList': blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastGetDbChunk': blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastCreateQueryDNAP': blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordFinder_contig': blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordExtend': blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNewWordExtend': blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder_mh': blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder': blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastSaveCurrentHitlist': blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blast.c: In function 'SumHSPEvalue': blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable] blast.c: In function 'link_hsps': blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable] blast.c: In function 'blastMergeFilterLocs': blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wuninitialized] blast.c: In function 'BlastLinkHsps': blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastutl.c blastutl.c: In function 'BlastSeqLocFilterEx': blastutl.c:7554:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastPreliminaryGappedScore': blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blastutl.c: In function 'BlastGetGappedScore': blastutl.c:10282:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastNtFindWords': blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWordsEx': blastutl.c:12124:30: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWords_Old': blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastFindWords': blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11711:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback': blastutl.c:9008:42: warning: 'seqalign_array' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastool.c blastool.c: In function 'OOFBlastHSPGetNumIdentical': blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable] blastool.c: In function 'BlastCreateVirtualOIDList': blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastInsertList2Heap': blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastFreeHeap': blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BLASTFilterOverlapRegions': blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastPrintAlignInfo': blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'MegaBlastPrintAlignInfo': blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wuninitialized] blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastconcat.c blastconcat.c: In function 'BlastMakeFakeBspConcat': blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF splutil.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapxdrop.c gapxdrop.c: In function 'ALIGN_EX': gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg0.c bandalg0.c: In function 'g_band0_align': bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg0.c:266:12: warning: 'c' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg1.c bandalg1.c: In function 'gband_quadratic': bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg1.c: In function 'g_band1_align': bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg1.c: In function 'gband_quadratic': bandalg1.c:200:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg1.c:164:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg2.c bandalg2.c: In function 'gb_linear_align': bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable] bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable] bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable] bandalg2.c:326:9: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg3.c bandalg3.c: In function 'gband_linear_qgap': bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg3.c:292:21: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:28: note: 'Y' was declared here bandalg3.c:291:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:25: note: 'X' was declared here bandalg3.c:217:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:180:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg4.c bandalg4.c: In function 'g_band4_align_small': bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable] bandalg4.c: In function 'g_band4_align': bandalg4.c:286:13: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:544:3: warning: 'k' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:28: note: 'Y' was declared here bandalg4.c:823:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:25: note: 'X' was declared here bandalg4.c:694:10: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:634:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg5.c bandalg5.c: In function 'gband_q3gap': bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg5.c: In function 'g_band5_align': bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c: In function 'gband_q3gap': bandalg5.c:320:20: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:28: note: 'Y' was declared here bandalg5.c:319:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:25: note: 'X' was declared here bandalg5.c:180:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:140:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalgn.c bandalgn.c: In function 'ExtendSeqAlign': bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: In function 'CC_ExtendSeqAlign': bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: At top level: bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable] bandalgn.c: In function 'LocalBandToEditBlock': bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'SetLowUpFromBlast': bandalgn.c:1053:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1053:14: warning: 'maxsc' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'maxlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1048:10: warning: 'maxdi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'GetAlignExtremes': bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastkar.c blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable] blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable] blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable] blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable] blastkar.c: In function 'BLAST_ScoreBlkNew': blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF actutils.c actutils.c: In function 'SlideToHit': actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable] actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable] actutils.c: In function 'ResolveSpinConflict': actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable] actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable] actutils.c: In function 'ACT_FindBestAlnByDotPlot': actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] actutils.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function] actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function] actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function] actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function] actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function] actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function] actutils.c: In function 'GetOldBlastAlignmentPiece': actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit.c posit.c: In function 'posDemographics': posit.c:1110:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFreqsToMatrix': posit.c:1679:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] posit.c: In function 'posComputePseudoFreqs': posit.c:1840:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] posit.c: In function 'WposComputation': posit.c:1988:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posPrintInformation': posit.c:2319:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFindAlignmentDimensions': posit.c:3064:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3070:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3079:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3086:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posPreprocessAlignment': posit.c:3137:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3152:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posReadAlignment': posit.c:3253:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posFindAlignmentDimensions': posit.c:3087:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posComputeSequenceWeights': posit.c:1447:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] posit.c:1424:18: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posReadCheckpoint': posit.c:2873:28: warning: 'j' may be used uninitialized in this function [-Wuninitialized] posit.c:2702:11: note: 'j' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup.c lookup.c: In function 'lookup_get_memory': lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] lookup.c: In function 'MegaBlastBuildLookupTable': lookup.c:1047:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1051:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1078:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1082:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable] lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF readdb.c readdb.c: In function 'readdb_parse_db_names': readdb.c:2498:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] readdb.c: In function 'FindBlastDBFileEx': readdb.c:3475:33: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_new_internalEx': readdb.c:3553:25: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_get_link': readdb.c:4747:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable] readdb.c:4746:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable] readdb.c: In function 'readdb_check_oid': readdb.c:4891:18: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses] readdb.c: In function 'readdb_seqid2fasta': readdb.c:5231:22: warning: unused variable 'dummy_gi' [-Wunused-variable] readdb.c:5175:13: warning: unused variable 'chptr' [-Wunused-variable] readdb.c: In function 'FDBLoadMembershipsTable': readdb.c:8260:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable] readdb.c: In function 'SeqIdE2Index': readdb.c:8572:13: warning: unused variable 'tmp' [-Wunused-variable] readdb.c:8571:11: warning: unused variable 'tmptype' [-Wunused-variable] readdb.c: In function 'SeqIdSetE2Index': readdb.c:8876:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable] readdb.c: In function 'Fastacmd_Search_ex': readdb.c:12072:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable] readdb.c: In function 'DumpOneSequence': readdb.c:12409:14: warning: unused variable 'numeric_id' [-Wunused-variable] readdb.c: At top level: ../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable] ../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] readdb.c:12821:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function] readdb.c: In function 'readdb_get_taxonomy_names': readdb.c:5674:28: warning: 'ufp_last' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'readdb_get_descriptor': readdb.c:6663:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'GetAccList': readdb.c:11813:29: warning: 'AccListLast' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisam.c ncbisam.c: In function 'ISAMMakeStringIndex': ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable] ncbisam.c: In function 'ISAMInitSearch': ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable] ncbisam.c: In function 'ISAMMakeIndex': ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:983:14: warning: 'KeyInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c: In function 'ISAMCreateDatabase': ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wuninitialized] ncbisam.c: In function 'NISAMSearch': ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1750:19: warning: 'KeyPage' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1618:27: note: 'SampleNum' was declared here ncbisam.c: In function 'SISAMSearch': ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisort.c ncbisort.c: In function 'SORTFracCompare': ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int] ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int] ncbisort.c: At top level: ../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function] ncbisort.c: In function 'SORTMergeFPS': ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salign.c salign.c: In function 'BandAlignTwoSeqLocsFunc': salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable] salign.c: In function 'SortBlastHits': salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable] salign.c: In function 'link_solution': salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable] salign.c: In function 'SortBlastHits': salign.c:411:6: warning: 'salpdup' may be used uninitialized in this function [-Wuninitialized] salign.c:455:22: warning: 'salptmp' may be used uninitialized in this function [-Wuninitialized] salign.c:445:28: warning: 'preselect' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'TranslateSeqLoc.constprop.5': salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.3': salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wuninitialized] salign.c:1408:15: note: 'tail' was declared here salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:30: note: 'stop' was declared here salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:22: note: 'start1' was declared here salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:30: note: 'stop' was declared here salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:22: note: 'start1' was declared here salign.c: In function 'SeqLocListToSeqAlign': salign.c:1672:23: warning: 'master_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salptool.c salptool.c: In function 'MergeTwoDspBySIM4': salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable] salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable] salptool.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function] salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function] salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function] salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function] salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkutil.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkpcc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkptpf.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkepi.c urkepi.c: In function 'PredictEpiI0': urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiComp': urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiHP': urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiProbFunc': urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'FilterEpi': urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:56: note: 'right' was declared here urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:50: note: 'left' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkfltr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkdust.c urkdust.c: In function 'DustMe_h': urkdust.c:196:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] urkdust.c: In function 'DustForGraph': urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urksigu.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seg.c seg.c: In function 'getprob': seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkbias.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function] urkcnsrt.c: In function 'Scan3Frames': urkcnsrt.c:1385:5: warning: 'length' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urktree.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pseed3.c pseed3.c: In function 'SeedPruneHitsFromSeedReturn': pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'seedEngineCore': pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pseed3.c: In function 'output_hits': pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'init_order': pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern1.c pattern1.c: In function 'init_pattern': pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c: In function 'find_hitsS_DNA': pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: At top level: pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type] pattern1.c: In function 'and': pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: In function 'align': pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] pattern1.c: In function 'get_patL': pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'align': pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wuninitialized] pattern1.c:1097:15: warning: 'tempCC' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'get_patLL': pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'init_pattern': pattern1.c:178:14: warning: 'tj' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'align_of_pattern': pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF impatool.c impatool.c: In function 'IMPALAPrintHelp': impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mbalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscrn.c vecscrn.c: In function 'VSPrintOverviewFromSeqLocs': vecscrn.c:1078:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] vecscrn.c: In function 'VSPrintListFromSeqLocs': vecscrn.c:1188:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mblast.c mblast.c: In function 'BioseqMegaBlastEngineCore': mblast.c:961:12: warning: statement with no effect [-Wunused-value] mblast.c:987:12: warning: statement with no effect [-Wunused-value] mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc': mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastWordFinder_disc_1b': mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastGappedAlign': mblast.c:2920:35: warning: 'gap_align' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder_disc': mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2117:51: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder': mblast.c:2711:51: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:17: note: 'ecode2' was declared here mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:9: note: 'ecode1' was declared here mblast.c: In function 'MegaBlastGapInfoToSeqAlign': mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF rpsutil.c rpsutil.c: In function 'RPSBlastSearchLight': rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable] rpsutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] rpsutil.c: In function 'getAuxInformation': rpsutil.c:398:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:404:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:405:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:406:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:407:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:408:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:409:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:410:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:415:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:416:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c: In function 'RPSAlignTraceBack': rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSCalcEValue': rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2238:13: warning: 'dbname' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF kappa.c kappa.c: In function 'Kappa_SequenceGetProteinRange': kappa.c:1399:7: warning: unused variable 'i' [-Wunused-variable] kappa.c: At top level: kappa.c:2203:5: warning: initialization from incompatible pointer type [enabled by default] kappa.c:2203:5: warning: (near initialization for 'redo_align_callbacks.get_range') [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF xmlblast.c xmlblast.c: In function 'PSIXmlInit': xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] xmlblast.c: In function 'BXMLGetSeqLineForStdSeg': xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'BXMLSeqAlignToHits': xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'SeqAlignToHits': xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bxmlobj.c bxmlobj.c: In function 'BlastOutputAsnRead': bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'ParametersAsnRead': bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'IterationAsnRead': bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'StatisticsAsnRead': bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'HitAsnRead': bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'HspAsnRead': bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotseq.c dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces] dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces] dotseq.c: In function 'DOT_BuildPLookup': dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable] dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable] dotseq.c: In function 'DOT_ComputeHits': dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable] dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable] dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot': dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] dotseq.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotseq.c: In function 'DOT_BuildHitList': dotseq.c:1286:9: warning: 'index' may be used uninitialized in this function [-Wuninitialized] dotseq.c:1310:19: note: 'index' was declared here dotseq.c:1309:19: warning: 'hitlist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF spidey.c spidey.c: In function 'SPI_PrintResult': spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AlnSinglemRNAToPieces': spidey.c:2850:4: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: In function 'SPI_FillInLastmRNAHoles': spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_FindBestAlnByDotPlot': spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_ConnectAlnPieces': spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable] spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AdjustSplicesInPieces': spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_CheckMrnaOrder': spidey.c:10293:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10297:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10310:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10312:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF motif.c motif.c: In function 'MOT_FindPolyA': motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: In function 'MOT_FindKozak': motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blfmtutl.c blfmtutl.c: In function 'BlastPrintTabularResults': blfmtutl.c:1113:13: warning: 'alignments_count' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1331:19: warning: 's_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1330:21: warning: 's_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1329:19: warning: 'q_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1328:21: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1072:20: warning: 'query_id' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c: In function 'BlastSetUserErrorString': blfmtutl.c:1431:13: warning: 'title' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_heap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smith_waterman.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF redo_alignment.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontmb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictogif.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontl.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfonts.c gcc -DWIN_GIF -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c ncbidrwg.c: In function 'Nlm_SetFontData': ncbidrwg.c:489:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontData': ncbidrwg.c:501:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_FindFont': ncbidrwg.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ReuseFont': ncbidrwg.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontSpec': ncbidrwg.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_AssignPrinterFont': ncbidrwg.c:2928:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GIFRgnToRect': ncbidrwg.c:4098:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_RectToGIFRgn': ncbidrwg.c:4109:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ClearRgn': ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_DiffRgn': ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_XorRgn': ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EqualRgn': ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EmptyRgn': ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_CopyPixmap': ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable] ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_GetColorRGB': ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wuninitialized] rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF algorend.c algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'RenderObject': algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable] algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderLabel': algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: In function 'Do3DOrigin': algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable] algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wuninitialized] algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc.isra.6': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'RenderObject': algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'Do3DOrigin': algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dsave.c cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DViewer': cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dshim.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a mv algorend.o algorend.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c algorend.c: In function 'Cn3D_SetOGLFont': algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable] algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable] algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable] algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable] algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable] algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'MasterChangeLabelsProc': algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable] algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable] algorend.c: In function 'ResetLabelCtrls': algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable] algorend.c: In function 'LabelControls': algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable] algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable] algorend.c: In function 'Cn3D_SetQualityFromAppParams': algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'OGL_Quality': algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable] algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable] algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderControls': algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderObject': algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable] algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable] algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable] algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable] algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable] algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable] algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable] algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'RenderLabel': algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable] algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable] algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable] algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] mv algorend.o algorend.glo mv algorend.tmp algorend.o mv cn3dmsel.o cn3dmsel.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c mv cn3dmsel.o cn3dmsel.glo mv cn3dmsel.tmp cn3dmsel.o mv cn3dopen.o cn3dopen.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here mv cn3dopen.o cn3dopen.glo mv cn3dopen.tmp cn3dopen.o mv cn3dsave.o cn3dsave.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c cn3dsave.c: In function 'Cn3D_AddMatrix': cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] mv cn3dsave.o cn3dsave.glo mv cn3dsave.tmp cn3dsave.o mv cn3dxprt.o cn3dxprt.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] mv cn3dxprt.o cn3dxprt.glo mv cn3dxprt.tmp cn3dxprt.o mv cn3dwin.o cn3dwin.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Cn3D_Default_HLColor': cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable] cn3dwin.c: In function 'Cn3D_RedrawEx': cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable] cn3dwin.c: In function 'fnPreCHLresidue': cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: In function 'Cn3DWin': cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable] cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function] cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function] cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function] cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] mv cn3dwin.o cn3dwin.glo mv cn3dwin.tmp cn3dwin.o mv cn3dentr.o cn3dentr.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c mv cn3dentr.o cn3dentr.glo mv cn3dentr.tmp cn3dentr.o mv cn3dmsg.o cn3dmsg.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmsg.o cn3dmsg.glo mv cn3dmsg.tmp cn3dmsg.o mv cn3dmatn.o cn3dmatn.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mv cn3dmatn.o cn3dmatn.glo mv cn3dmatn.tmp cn3dmatn.o mv cn3dmodl.o cn3dmodl.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmodl.o cn3dmodl.glo mv cn3dmodl.tmp cn3dmodl.o mv cn3dshim.o cn3dshim.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c cn3dshim.c: In function 'Cn3D_Size': cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] mv cn3dshim.o cn3dshim.glo mv cn3dshim.tmp cn3dshim.o mv cn3dmesh.o cn3dmesh.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mv cn3dmesh.o cn3dmesh.glo mv cn3dmesh.tmp cn3dmesh.o mv cn3dstyl.o cn3dstyl.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable] cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable] cn3dstyl.c: In function 'ModelSetLabelCtrls': cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable] cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] mv cn3dstyl.o cn3dstyl.glo mv cn3dstyl.tmp cn3dstyl.o mv seqcons.o seqcons.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] mv seqcons.o seqcons.glo mv seqcons.tmp seqcons.o rm -f libncbicn3dOGL.a ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo cp -p libncbicn3dOGL.a ../lib ranlib ../lib/libncbicn3dOGL.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_engine.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_extend.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_filter.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hits.c blast_hits.c: In function 'Blast_HSPResultsFromHSPStreamWithLimitEx': blast_hits.c:3499:13: warning: variable 'rm_hsps' set but not used [-Wunused-but-set-variable] blast_hits.c: At top level: blast_hits.c:3212:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_itree.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_lookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_sw.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_setup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_stat.c blast_stat.c: In function 's_BlastGumbelBlkNew': blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable] blast_stat.c: At top level: blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] blast_stat.c: In function 'BLAST_SpougeEtoS': blast_stat.c:5205:12: warning: 'a' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback.c blast_traceback.c: In function 'Blast_TracebackFromHSPList': blast_traceback.c:393:38: warning: 'qe' may be used uninitialized in this function [-Wuninitialized] blast_traceback.c:365:22: note: 'qe' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapinfo.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF greedy_align.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF link_hsps.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF na_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_math.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_std.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_extend.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_lookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_encoding.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_kappa.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_parameters.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_posit.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_program.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_query_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tune.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aascan.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nascan.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF split_query.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF index_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o cp -p libblast.a ../lib ranlib ../lib/libblast.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_api.c blast_api.c: In function 's_BlastRPSInfoInit': blast_api.c:149:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:151:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:152:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:153:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:154:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:155:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:156:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:157:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:161:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:162:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_input.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_format.c blast_format.c: In function 's_MBXmlInit': blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] blast_format.c: In function 's_LoadMatrix': blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options_api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_prelim.c blast_prelim.c: In function 'Blast_PrelimSearchThreadRun': blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_returns.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seq.c blast_seq.c: In function 's_SeqLocFillSequenceBuffer': blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped': blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tabular.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF repeats_filter.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c seqsrc_readdb.c: In function 's_ReaddbGetNextChunk': seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF twoseq_api.c twoseq_api.c: In function 's_TwoSeqBasicFillOptions': twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable] twoseq_api.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust_filter.c dust_filter.c: In function 's_GetFilteringLocations': dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message_api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c hspfilter_queue.c: In function 's_BlastHSPQueueInit': hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable] rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a gcc -o asntool -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm asncode.c: In function 'AsnCode_SETOF_base_or_user': asncode.c:1518:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable] asncode.c:1517:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'userobj_and_basetype_SETOF': asncode.c:2472:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIsReallyChoice': asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart': asncode.c:3623:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIter': asncode.c:4237:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCode': asncode.c:4316:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable] asncode.c: At top level: asncode.c:286:17: warning: 'defptr' defined but not used [-Wunused-variable] asncode.c:288:17: warning: 'defbigint' defined but not used [-Wunused-variable] asncode.c:289:17: warning: 'defreal' defined but not used [-Wunused-variable] asncode.c:290:17: warning: 'defbool' defined but not used [-Wunused-variable] asncode.c:291:17: warning: 'defbyte' defined but not used [-Wunused-variable] cp -p asntool ../bin make[2]: Leaving directory `/«PKGBUILDDIR»/build' /usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC" \ LDFLAGS="-Wl,-z,relro -Wl,-z,now" \ NETENTREZVERSION="2.02c2ASN1SPEC6" \ BLIB31=libvibnet.a OGLLIBS="-lGLU -lGL -lpng " all libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib make[2]: Entering directory `/«PKGBUILDDIR»/build' ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c ni_service.c: In function 's_GenericGetService': ni_service.c:199:19: warning: unused variable 'c' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c netentr.c: In function 's_NetEntTLEvalCount': netentr.c:798:5: warning: "/*" within comment [-Wcomment] netentr.c: In function 's_NetDocSumListGet': netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable] netentr.c: In function 's_NetTermListByTerm': netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable] netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 's_NetTermListByPage': netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 'NetEntTLEval': netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized] netentr.c: In function 'NetEntTLEvalCount': netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wuninitialized] netentr.c:782:16: note: 'atp' was declared here netentr.c: In function 'NetTermListByTerm': netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wuninitialized] netentr.c:1210:9: note: 'next_page' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c netlib.c: In function 'BoolExprAsnWrite': netlib.c:307:16: warning: unused variable 'n' [-Wunused-variable] netlib.c: At top level: netlib.c:96:16: warning: 'loaded' defined but not used [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c objneten.c: In function 'EntrezNeighborTextAsnRead': objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'ChildLinkAsnRead': objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezHierarchyAsnRead': objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezBlastreqAsnRead': objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'EntrezExtraInfoAsnRead': objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterArticlesAsnRead': objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterRespAsnRead': objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateConstraintsAsnRead': objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateVectorAsnRead': objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetByFidAsnRead': objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetFeatIdsAsnRead': objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable] rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Naccentr.c: In function 'EntrezDocSumListGet': Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Caccentr.c: In function 'EntrezDocSumListGet': Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c trmlst.c: In function 'FetchFromTermList': trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c docsum.c: In function 'ImportDocSumForm': docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable] docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable] docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable] docsum.c: In function 'SaveDocsumProject': docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] docsum.c: At top level: docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable] docsum.c: In function 'LaunchStructureViewer': docsum.c:4192:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] docsum.c: In function 'FetchLocalBioseq': docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wuninitialized] rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c objmla.c: In function 'MlaRequestFree': objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgAsnRead': objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgListAsnRead': objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla.c: In function 'MlaBackAsnRead': objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function] medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function] medarch.c: In function 'MedArchPubSetCreate': medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1697:5: warning: 'pubSetAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c objblst3.c: In function 'BlastSearchAsnRead': objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastRequestFree': objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff2_cutoff2Free': objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'Cutoff2_cutoff2AsnRead': objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffAsnRead': objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffFree': objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastMatrixAsnRead': objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoAsnRead': objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastMaskAsnRead': objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastKABlkAsnRead': objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastErrorAsnRead': objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPhialignAsnRead': objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoGetAsnRead': objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSeqIdAsnRead': objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSequenceAsnRead': objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPartsAsnRead': objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastQueuedAsnRead': objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastProgressAsnRead': objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastDeflineAsnRead': objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastVersionAsnRead': objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastHitAsnRead': objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastResultsAsnRead': objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastResponseAsnRead': objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1421:10: note: 'choice' was declared here objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1787:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c netblap3.c: In function 'BlastNetBioseqFetchFunc': netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] netblap3.c: In function 'MegaBlastSeqLocNetCore': netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] netblap3.c: At top level: ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function] netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function] netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function] netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function] netblap3.c: In function 'BlastNetMatrixToBlastMatrix': netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wuninitialized] netblap3.c: In function 'SubmitRequest': netblap3.c:1763:18: warning: 'bllist' may be used uninitialized in this function [-Wuninitialized] netblap3.c:1698:19: note: 'bllist' was declared here netblap3.c: In function 'TraditionalBlastReportEngine': netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] netblap3.c:2576:21: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c objtax1.c: In function 'Taxon1ReqFree': objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1InfoAsnRead': objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1ErrorAsnRead': objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1NameAsnRead': objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1DataAsnRead': objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon2DataAsnRead': objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax1.c: In function 'Taxon1RespAsnRead': objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c taxutil.c: In function 'taxname_match': taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable] taxutil.c: In function 'get_lineage': taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] taxutil.c: In function 'get_gcode': taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c tc2proc.c: In function 'getIdByOrgRef': tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable] tc2proc.c: In function 'bldLineage': tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable] tc2proc.c: In function 'storedTaxId': tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable] tc2proc.c: In function 'tax1e_needUpdate': tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable] tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable] tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable] tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable] tc2proc.c: At top level: tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function] tc2proc.c: In function 'mergeOrgMod': tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c parttree.c: In function 'tax_ptree_addSubtree': parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c taxblast.c: In function 'TXBHtmlReportInternal': taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable] taxblast.c: At top level: taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function] taxblast.c: In function 'RDTaxLookupReset': taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type] taxblast.c: In function 'TXBGetTargetGi': taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c id1gen.c: In function 'ID1serverRequestFree': id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverMaxcomplexAsnRead': id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqHistAsnRead': id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqEntryInfoAsnRead': id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1blobInfoAsnRead': id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverDebugAsnRead': id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverBackAsnRead': id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c id1arch.c: In function 'ID1ArchSeqEntryGet': id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'ID1ArchGIGet': id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'SeqHistPrintTable': id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c accid1.c: In function 's_ID1BioseqFetchFunc': accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable] rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a mkdir ../shlib rm -f ../shlib/*.a ln ../lib/*.a ../shlib cd ../shlib; make -f ../make/makeshlb.unx `ls *.a | sed "s/\.a/.so.6/"` SH1="gcc -o" SH2="-shared *.o" make[3]: Entering directory `/«PKGBUILDDIR»/shlib' gcc -shared -Wl,-soname=libblastcompadj.so.6 -o libblastcompadj.so.6.1.20120620 \ -Wl,--whole-archive libblastcompadj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ -lm gcc -shared -Wl,-soname=libncbi.so.6 -o libncbi.so.6.1.20120620 \ -Wl,--whole-archive libncbi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ -lm gcc -shared -Wl,-soname=libblast.so.6 -o libblast.so.6.1.20120620 \ -Wl,--whole-archive libblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblastcompadj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm ln -s libblast.so.6.1.20120620 libblast.so.6 ln -s libblast.so.6.1.20120620 libblast.so gcc -shared -Wl,-soname=libncbiobj.so.6 -o libncbiobj.so.6.1.20120620 \ -Wl,--whole-archive libncbiobj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbi.so.6.1.20120620 -lm gcc -shared -Wl,-soname=libncbitool.so.6 -o libncbitool.so.6.1.20120620 \ -Wl,--whole-archive libncbitool.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblastcompadj.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm libncbitool.a(pobutil.o): In function `memset': /usr/include/arm-linux-gnueabihf/bits/string3.h:82: warning: memset used with constant zero length parameter; this could be due to transposed parameters gcc -shared -Wl,-soname=libblastapi.so.6 -o libblastapi.so.6.1.20120620 \ -Wl,--whole-archive libblastapi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblast.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm ln -s libblastapi.so.6.1.20120620 libblastapi.so.6 ln -s libblastapi.so.6.1.20120620 libblastapi.so ln -s libblastcompadj.so.6.1.20120620 libblastcompadj.so.6 ln -s libblastcompadj.so.6.1.20120620 libblastcompadj.so gcc -shared -Wl,-soname=libnetcli.so.6 -o libnetcli.so.6.1.20120620 \ -Wl,--whole-archive libnetcli.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbi.so.6.1.20120620 gcc -shared -Wl,-soname=libncbiid1.so.6 -o libncbiid1.so.6.1.20120620 \ -Wl,--whole-archive libncbiid1.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbi.so.6.1.20120620 gcc -shared -Wl,-soname=libncbimmdb.so.6 -o libncbimmdb.so.6.1.20120620 \ -Wl,--whole-archive libncbimmdb.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiid1.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm gcc -shared -Wl,-soname=libvibrantOGL.so.6 -o libvibrantOGL.so.6.1.20120620 \ -Wl,--whole-archive libvibrantOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lGLU -lGL -lpng -lXm -lXmu -lXt -lX11 -lm gcc -shared -Wl,-soname=libncbidesk.so.6 -o libncbidesk.so.6.1.20120620 \ -Wl,--whole-archive libncbidesk.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblastapi.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libncbitool.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm gcc -shared -Wl,-soname=libddvlib.so.6 -o libddvlib.so.6.1.20120620 \ -Wl,--whole-archive libddvlib.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbidesk.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 ln -s libddvlib.so.6.1.20120620 libddvlib.so.6 ln -s libddvlib.so.6.1.20120620 libddvlib.so ln -s libncbi.so.6.1.20120620 libncbi.so.6 ln -s libncbi.so.6.1.20120620 libncbi.so ln -s libncbiNacc.so.6.1.20120620 libncbiCacc.so.6.1.20120620 ln -s libncbiCacc.so.6.1.20120620 libncbiCacc.so.6 ln -s libncbiCacc.so.6.1.20120620 libncbiCacc.so gcc -shared -Wl,-soname=libncbicdr.so.6 -o libncbicdr.so.6.1.20120620 \ -Wl,--whole-archive libncbicdr.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 gcc -shared -Wl,-soname=libncbiNacc.so.6 -o libncbiNacc.so.6.1.20120620 \ -Wl,--whole-archive libncbiNacc.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbicdr.so.6.1.20120620 libnetentr.a libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm ln -s libncbiNacc.so.6.1.20120620 libncbiNacc.so.6 ln -s libncbiNacc.so.6.1.20120620 libncbiNacc.so ln -s libncbiNacc.so.6.1.20120620 libncbiacc.so.6.1.20120620 ln -s libncbiacc.so.6.1.20120620 libncbiacc.so.6 ln -s libncbiacc.so.6.1.20120620 libncbiacc.so ln -s libncbicdr.so.6.1.20120620 libncbicdr.so.6 ln -s libncbicdr.so.6.1.20120620 libncbicdr.so ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3d.so.6.1.20120620 ln -s libncbicn3d.so.6.1.20120620 libncbicn3d.so.6 ln -s libncbicn3d.so.6.1.20120620 libncbicn3d.so gcc -shared -Wl,-soname=libncbicn3dOGL.so.6 -o libncbicn3dOGL.so.6.1.20120620 \ -Wl,--whole-archive libncbicn3dOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiNacc.so.6.1.20120620 libddvlib.so.6.1.20120620 libncbidesk.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 -lm ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3dOGL.so.6 ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3dOGL.so ln -s libncbidesk.so.6.1.20120620 libncbidesk.so.6 ln -s libncbidesk.so.6.1.20120620 libncbidesk.so ln -s libncbiid1.so.6.1.20120620 libncbiid1.so.6 ln -s libncbiid1.so.6.1.20120620 libncbiid1.so gcc -shared -Wl,-soname=libncbimla.so.6 -o libncbimla.so.6.1.20120620 \ -Wl,--whole-archive libncbimla.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbi.so.6.1.20120620 ln -s libncbimla.so.6.1.20120620 libncbimla.so.6 ln -s libncbimla.so.6.1.20120620 libncbimla.so ln -s libncbimmdb.so.6.1.20120620 libncbimmdb.so.6 ln -s libncbimmdb.so.6.1.20120620 libncbimmdb.so ln -s libncbiobj.so.6.1.20120620 libncbiobj.so.6 ln -s libncbiobj.so.6.1.20120620 libncbiobj.so ln -s libncbitool.so.6.1.20120620 libncbitool.so.6 ln -s libncbitool.so.6.1.20120620 libncbitool.so gcc -shared -Wl,-soname=libncbitxc2.so.6 -o libncbitxc2.so.6.1.20120620 \ -Wl,--whole-archive libncbitxc2.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbitool.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm ln -s libncbitxc2.so.6.1.20120620 libncbitxc2.so.6 ln -s libncbitxc2.so.6.1.20120620 libncbitxc2.so gcc -shared -Wl,-soname=libnetblast.so.6 -o libnetblast.so.6.1.20120620 \ -Wl,--whole-archive libnetblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbitool.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 ln -s libnetblast.so.6.1.20120620 libnetblast.so.6 ln -s libnetblast.so.6.1.20120620 libnetblast.so ln -s libnetcli.so.6.1.20120620 libnetcli.so.6 ln -s libnetcli.so.6.1.20120620 libnetcli.so ln -s libncbiNacc.so.6.1.20120620 libnetentr.so.6.1.20120620 ln -s libnetentr.so.6.1.20120620 libnetentr.so.6 ln -s libnetentr.so.6.1.20120620 libnetentr.so gcc -shared -Wl,-soname=libvibgif.so.6 -o libvibgif.so.6.1.20120620 \ -Wl,--whole-archive libvibgif.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbi.so.6.1.20120620 -lm ln -s libvibgif.so.6.1.20120620 libvibgif.so.6 ln -s libvibgif.so.6.1.20120620 libvibgif.so gcc -shared -Wl,-soname=libvibnet.so.6 -o libvibnet.so.6.1.20120620 \ -Wl,--whole-archive libvibnet.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiNacc.so.6.1.20120620 libncbidesk.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbicdr.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 ln -s libvibnet.so.6.1.20120620 libvibnet.so.6 ln -s libvibnet.so.6.1.20120620 libvibnet.so ln -s libvibrantOGL.so.6.1.20120620 libvibrant.so.6.1.20120620 ln -s libvibrant.so.6.1.20120620 libvibrant.so.6 ln -s libvibrant.so.6.1.20120620 libvibrant.so ln -s libvibrantOGL.so.6.1.20120620 libvibrantOGL.so.6 ln -s libvibrantOGL.so.6.1.20120620 libvibrantOGL.so make[3]: Leaving directory `/«PKGBUILDDIR»/shlib' rm -f ../shlib/*.a make[2]: Leaving directory `/«PKGBUILDDIR»/build' /usr/bin/make -C build clean make[2]: Entering directory `/«PKGBUILDDIR»/build' rm -f *.[acho] *.glo make[2]: Leaving directory `/«PKGBUILDDIR»/build' /usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG" \ LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a make[2]: Entering directory `/«PKGBUILDDIR»/build' chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect mkdir: cannot create directory `../include/connect': File exists make[2]: [copy] Error 1 (ignored) chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools mkdir: cannot create directory `../include/ctools': File exists make[2]: [copy] Error 1 (ignored) chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithr.c ncbithr.c: In function 's_TlsDestroyAll': ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable] cp -p ncbithr.o ../lib gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimain.c ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbibs.c ncbibs.c: In function 'Nlm_BSMerge': ncbibs.c:106:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSAdd': ncbibs.c:210:4: warning: statement with no effect [-Wunused-value] ncbibs.c:222:4: warning: statement with no effect [-Wunused-value] ncbibs.c:223:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSDelete': ncbibs.c:336:4: warning: statement with no effect [-Wunused-value] ncbibs.c:341:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSWrite': ncbibs.c:594:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSRead': ncbibs.c:658:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSGetByte': ncbibs.c:702:2: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wwwutils.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbierr.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: In function 'strncat', inlined from 'ErrMsgRoot_fopen' at ncbierr.c:955:20: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbienv.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbifile.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiprop.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimath.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimem.c ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default] /usr/include/features.h:292:0: note: this is the location of the previous definition gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimisc.c ncbimisc.c: In function 'MergeStringArray': ncbimisc.c:1269:22: warning: 'return' with no value, in function returning non-void [-Wreturn-type] ncbimisc.c: In function 'XmlPathSuffixIs': ncbimisc.c:2947:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimsg.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbistr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisgml.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ncbisgml.c:80: In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:265:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:284:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:340:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:354:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbitime.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbilang.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnbufo.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asndebin.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnenbin.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngen.c asngen.c: In function 'AsnFindNthPieceOfObject': asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnio.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlex.c asnlex.c:1322:13: warning: 'AsnLexWordUTF8' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlext.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnout.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnprint.c asnprint.c: In function 'GetXMLModuleName': asnprint.c:102:2: warning: statement with no effect [-Wunused-value] asnprint.c: In function 'AsnPrintCloseStruct': asnprint.c:1771:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable] asnprint.c: In function 'AsnPrintModuleXMLInc': asnprint.c:2092:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asntypes.c asntypes.c: In function 'AsnTreeLoad': asntypes.c:1274:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1288:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1301:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1333:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngenob.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gifgen.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF togif.c togif.c: In function 'gdImageCreateFromGif': togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable] togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable] togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable] gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithrs.c ncbithrs.c: In function 's_TlsDestroyAll': ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function 're_match_2': regex.c:3768:19: warning: unused variable 'destination' [-Wunused-variable] regex.c:3915:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:3968:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable] regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable] regex.c:4107:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4120:11: warning: unused variable 'destination' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tsprintf.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiargs.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tree.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c ncbi_socket.c: In function 's_GetLocalPort': ncbi_socket.c:386:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_IsConnected': ncbi_socket.c:2435:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:190:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'TRIGGER_Create': ncbi_socket.c:4002:18: warning: unused variable 'x_id' [-Wunused-variable] ncbi_socket.c: In function 's_CreateListening': ncbi_socket.c:4454:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_Accept': ncbi_socket.c:4722:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:214:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_CreateOnTop': ncbi_socket.c:5174:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:133:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c:5210:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'DSOCK_Bind': ncbi_socket.c:6609:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'DSOCK_RecvMsg': ncbi_socket.c:7002:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] /usr/include/arm-linux-gnueabihf/bits/socket2.h:65:1: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_types.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_util.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_version.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_local.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urlquery.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF binary.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn_connection.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnflpt.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnfspc.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnmfls.c rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o cp -p libncbi.a ../lib ranlib ../lib/libncbi.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objacces.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalign.c objalign.c: In function 'CommonSeqAlignLabelFunc': objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegAsnRead': objalign.c:2169:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegAsnRead': objalign.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonAsnRead': objalign.c:2600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegModifierFree': objalign.c:2858:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProductPosFree': objalign.c:3031:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkFree': objalign.c:3204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SpliceSiteAsnRead': objalign.c:3446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProtPosAsnRead': objalign.c:3600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseAlignAsnRead': objalign.c:3769:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegExtAsnRead': objalign.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkAsnRead': objalign.c:3305:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objalign.c: In function 'SplicedSegModifierAsnRead': objalign.c:2938:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objall.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objbibli.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfeat.c objfeat.c: In function 'ModelEvidenceSupportAsnRead': objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExperimentSupportAsnRead': objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ProgramIdAsnRead': objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'EvidenceBasisAsnRead': objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'InferenceSupportAsnRead': objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ModelEvidenceItemAsnRead': objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SeqFeatSupportAsnRead': objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualAsnRead': objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualSetAsnRead': objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAGenAsnRead': objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'GeneNomenclatureAsnRead': objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerAsnRead': objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerSetAsnRead': objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionAsnRead': objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionSetAsnRead': objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneRefAsnRead': objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqSetAsnRead': objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqAsnRead': objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginAsnRead': objfeat.c:9393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginConditionAsnRead': objfeat.c:9472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationRefAsnRead': objfeat.c:9551:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ConsequenceAsnWrite': objfeat.c:10112:12: warning: variable 'av' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead': objfeat.c:10572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_frameshiftAsnRead': objfeat.c:10650:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataFree': objfeat.c:10750:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataSetAsnRead': objfeat.c:10803:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementFree': objfeat.c:10997:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationInstAsnRead': objfeat.c:11126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: At top level: objfeat.c:11275:1: warning: "/*" within comment [-Wcomment] objfeat.c: In function 'VariantPropertiesAsnRead': objfeat.c:11304:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PhenotypeAsnRead': objfeat.c:11625:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PopulationDataAsnRead': objfeat.c:11821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExtLocAsnRead': objfeat.c:12034:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Seq_seqFree': objfeat.c:12199:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'DeltaItemAsnRead': objfeat.c:12232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementAsnRead': objfeat.c:10539:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'CodeBreakAsnWrite': objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'VarRefDataAsnRead': objfeat.c:10965:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgen.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objloc.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmedli.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpub.c objpub.c: In function 'PubLabelUnique': objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable] objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable] objpub.c: In function 'PubSetAsnRead': objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wuninitialized] objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objres.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objscoremat.c objscoremat.c: In function 'PssmAsnRead': objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmIntermediateDataAsnRead': objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmFinalDataAsnRead': objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmParametersAsnRead': objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmWithParametersAsnRead': objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'BlockPropertyAsnRead': objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreBlockAsnRead': objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'LoopConstraintAsnRead': objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreDefAsnRead': objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'FormatRpsDbParametersAsnRead': objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objseq.c objseq.c: In function 'LinkageEvidenceAsnRead': objseq.c:1603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqGapAsnRead': objseq.c:1755:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescrAsnWriteExtra': objseq.c:2023:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescAsnRead': objseq.c:2446:28: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objseq.c: In function 'BioseqAsnRead': objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objblock.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcode.c objcode.c:45:51: warning: "/*" within comment [-Wcomment] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsset.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsub.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objprt.c objprt.c: In function 'PrintFormBooleanAsnRead': objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormEnumAsnRead': objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormTextAsnRead': objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'UserFormatAsnRead': objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormAsnRead': objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormatAsnRead': objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormBlockAsnRead': objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintTemplateAsnRead': objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfdef.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalignloc.c objalignloc.c: In function 'AlignLocSetAsnRead': objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'Loc_locFree': objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignLocAsnRead': objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'Loc_locAsnRead': objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdFree': objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignBoxAsnRead': objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignRowsAsnRead': objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignColumnsAsnRead': objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtable.c objtable.c: In function 'SeqTableColumnInfoAsnRead': objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnRead': objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnWrite': objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableAsnRead': objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnRead': objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnWrite': objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'CommonBytesTableAsnRead': objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonBytesTableAsnWrite': objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableSingleDataFree': objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableMultiDataAsnRead': objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSparseIndexAsnRead': objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpubme.c objpubme.c: In function 'PubmedEntryAsnRead': objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c: In function 'PubmedUrlAsnRead': objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmdrs.c objmdrs.c: In function 'MedlarsEntryAsnRead': objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c: In function 'MedlarsRecordAsnRead': objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objproj.c objproj.c: In function 'ProjectAsnRead': objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: In function 'ProjectDescrAsnRead': objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescFree': objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescAsnRead': objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objproj.c: In function 'ProjdescAsnRead': objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgbseq.c objgbseq.c: In function 'GBSetAsnRead': objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBSeqAsnRead': objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBReferenceAsnRead': objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentAsnRead': objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentAsnRead': objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureAsnRead': objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureSetAsnRead': objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqDataAsnRead': objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBXrefAsnRead': objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentParagraphAsnRead': objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentItemAsnRead': objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentItemAsnRead': objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBIntervalAsnRead': objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBQualifierAsnRead': objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqItemAsnRead': objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtseq.c objtseq.c: In function 'TSeqAsnRead': objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'TSeqSetAsnRead': objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToTSeq': objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToMiniTSeq': objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objinsdseq.c objinsdseq.c: In function 'INSDSetAsnRead': objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDSeqAsnRead': objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDReferenceAsnRead': objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentAsnRead': objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentAsnRead': objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureAsnRead': objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureSetAsnRead': objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqDataAsnRead': objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDXrefAsnRead': objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentParagraphAsnRead': objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentItemAsnRead': objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentItemAsnRead': objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDIntervalAsnRead': objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDQualifierAsnRead': objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqItemAsnRead': objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmacro.c objmacro.c: In function 'AECRActionAsnRead': objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseActionAsnRead': objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnRead': objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnWrite': objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnRead': objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnWrite': objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionAsnRead': objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'WordSubstitutionSetAsnRead': objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionSetAsnWrite': objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintAsnRead': objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnRead': objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnWrite': objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'LocationPosConstraintFree': objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationConstraintAsnRead': objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValAsnRead': objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValChoiceFree': objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualLegalValChoiceAsnRead': objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnRead': objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnWrite': objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualChoiceFree': objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualChoiceAsnRead': objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldAsnRead': objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldLegalAsnRead': objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldPairAsnRead': objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaFeatTypeFree': objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualAsnRead': objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualPairAsnRead': objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualPairAsnRead': objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualChoiceFree': objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualTextValAsnRead': objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValChoiceFree': objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnRead': objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnWrite': objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtFieldPairAsnRead': objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldFree': objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMoleculePairAsnRead': objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTechniquePairAsnRead': objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoCompletednessPairAsnRead': objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMolClassPairAsnRead': objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTopologyPairAsnRead': objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoStrandPairAsnRead': objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldPairFree': objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnRead': objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnWrite': objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldConstraintAsnRead': objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldFree': objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnRead': objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnWrite': objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'DBLinkFieldPairAsnRead': objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldConstraintAsnRead': objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeFree': objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintAsnRead': objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PublicationConstraintAsnRead': objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceConstraintAsnRead': objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead': objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldFree': objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead': objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead': objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite': objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnRead': objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnWrite': objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldTypeFree': objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree': objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'QuantityConstraintFree': objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintAsnRead': objmacro.c:8945:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8944:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TranslationConstraintAsnRead': objmacro.c:9170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9169:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceFree': objmacro.c:9322:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9384:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnRead': objmacro.c:9616:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9613:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnWrite': objmacro.c:9669:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextMarkerFree': objmacro.c:9709:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9741:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextPortionAsnRead': objmacro.c:9937:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9936:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldEditAsnRead': objmacro.c:10153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10152:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldPairTypeFree': objmacro.c:10300:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10350:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyActionAsnRead': objmacro.c:10567:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10566:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnRead': objmacro.c:10744:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10743:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnWrite': objmacro.c:10819:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformFree': objmacro.c:10875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextTransformAsnRead': objmacro.c:10910:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnRead': objmacro.c:11081:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11078:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnWrite': objmacro.c:11134:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConvertActionAsnRead': objmacro.c:11214:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11213:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CopyActionAsnRead': objmacro.c:11406:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11405:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnRead': objmacro.c:11572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11571:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnWrite': objmacro.c:11647:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'AECRParseActionAsnRead': objmacro.c:11745:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11744:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnRead': objmacro.c:11961:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11960:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnWrite': objmacro.c:12029:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveOutsideActionAsnRead': objmacro.c:12119:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:12118:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ActionChoiceFree': objmacro.c:12259:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12312:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgChoiceFree': objmacro.c:12499:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12528:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgAsnRead': objmacro.c:12711:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:12710:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcGeneralIdFree': objmacro.c:12839:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12871:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcFree': objmacro.c:13027:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:13065:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDstOrgAsnRead': objmacro.c:13319:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13318:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDestFree': objmacro.c:13447:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13485:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationIntervalAsnRead': objmacro.c:13693:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13692:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationChoiceFree': objmacro.c:13818:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13850:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnRead': objmacro.c:14024:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14021:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnWrite': objmacro.c:14077:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListChoiceFree': objmacro.c:14117:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceListChoiceAsnRead': objmacro.c:14149:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyFeatureActionAsnRead': objmacro.c:14338:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14337:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveFeatureActionAsnRead': objmacro.c:14602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14601:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFromCDSOptionsAsnRead': objmacro.c:14766:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14765:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsFree': objmacro.c:14900:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead': objmacro.c:14932:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RegionTypeAsnRead': objmacro.c:15099:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15098:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureDstOptionsFree': objmacro.c:15215:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15250:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureActionAsnRead': objmacro.c:15464:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15463:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditLocationStrandAsnRead': objmacro.c:15670:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15669:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial5SetActionAsnRead': objmacro.c:15831:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15830:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial3SetActionAsnRead': objmacro.c:15992:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15991:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PartialBothSetActionAsnRead': objmacro.c:16153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16152:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ExtendToFeatureAsnRead': objmacro.c:16315:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16314:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationEditTypeFree': objmacro.c:16452:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16499:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditFeatureLocationActionAsnRead': objmacro.c:16774:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16773:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnRead': objmacro.c:16971:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16970:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnWrite': objmacro.c:17053:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveDescriptorActionAsnRead': objmacro.c:17151:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17150:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AutodefActionAsnRead': objmacro.c:17317:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixPubCapsActionAsnRead': objmacro.c:17488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17487:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SortFieldsActionAsnRead': objmacro.c:17690:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17689:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixAuthorCapsAsnRead': objmacro.c:17866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17865:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixCapsActionFree': objmacro.c:17982:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:18017:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixFormatActionFree': objmacro.c:18189:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:18218:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead': objmacro.c:18422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18421:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'GeneXrefTypeAsnRead': objmacro.c:18613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18612:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'XrefTypeFree': objmacro.c:18747:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'XrefTypeAsnRead': objmacro.c:18779:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnRead': objmacro.c:18948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnWrite': objmacro.c:19023:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MakeGeneXrefActionAsnRead': objmacro.c:19116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19115:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AuthorFixActionAsnRead': objmacro.c:19281:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19280:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'UpdateSequencesActionAsnRead': objmacro.c:19447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19446:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CreateTSAIdsSrcFree': objmacro.c:19574:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'CreateTSAIdsSrcAsnRead': objmacro.c:19606:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CreateTSAIdsActionAsnRead': objmacro.c:19787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19786:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AutofixActionAsnRead': objmacro.c:19966:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19965:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixSetsActionFree': objmacro.c:20084:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixSetsActionAsnRead': objmacro.c:20113:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TableMatchTypeFree': objmacro.c:20269:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TableMatchTypeAsnRead': objmacro.c:20301:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TableMatchAsnRead': objmacro.c:20547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:20546:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyTableExtraDataFree': objmacro.c:20675:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ApplyTableExtraDataAsnRead': objmacro.c:20704:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyTableActionAsnRead': objmacro.c:20877:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:20876:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AddFileActionAsnRead': objmacro.c:21057:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:21056:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AddDescriptorListActionAsnRead': objmacro.c:21225:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:21224:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AddDescriptorListActionAsnWrite': objmacro.c:21300:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveSequencesActionAsnRead': objmacro.c:21393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:21392:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveSequencesActionAsnWrite': objmacro.c:21461:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceFree': objmacro.c:21512:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:21613:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SearchFuncFree': objmacro.c:22093:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:22131:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SimpleReplaceAsnRead': objmacro.c:22400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:22399:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceFuncFree': objmacro.c:22536:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ReplaceFuncAsnRead': objmacro.c:22571:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceRuleAsnRead': objmacro.c:22751:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:22750:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SuspectRuleAsnRead': objmacro.c:22921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:22920:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:21852:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixSetsActionAsnRead': objmacro.c:20172:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:18284:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:18084:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12930:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9466:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9800:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10416:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12382:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12580:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:13160:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13552:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13906:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15320:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16603:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'TableMatchTypeAsnRead': objmacro.c:20392:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:22236:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objent2.c objent2.c: In function 'Entrez2IdListAsnRead': objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanExpAsnRead': objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementFree': objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LimitsAsnRead': objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanTermAsnRead': objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2RequestAsnRead': objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2RequestFree': objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2RequestAsnRead': objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2EvalBooleanAsnRead': objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermQueryAsnRead': objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermPosAsnRead': objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2HierQueryAsnRead': objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2GetLinksAsnRead': objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2IdAsnRead': objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DtFilterAsnRead': objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2ReplyAsnRead': objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2ReplyFree': objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2ReplyAsnRead': objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2InfoAsnRead': objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanReplyAsnRead': objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumListAsnRead': objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2TermListAsnRead': objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2HierNodeAsnRead': objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2LinkSetAsnRead': objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountListAsnRead': objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DbInfoAsnRead': objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2FieldInfoAsnRead': objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkInfoAsnRead': objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead': objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumAsnRead': objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DocsumDataAsnRead': objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermAsnRead': objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountAsnRead': objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objent2.c: In function 'E2ReplyAsnRead': objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ent2api.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pmfapi.c pmfapi.c: In function 'PubMedSynchronousQuery': pmfapi.c:1224:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQueryEx': pmfapi.c:1458:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQueryTI': pmfapi.c:1636:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQuerySRA': pmfapi.c:1717:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiRevHistSynchronousQuery': pmfapi.c:1790:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiAccVerSynchronousQuery': pmfapi.c:1842:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnRevHistSynchronousQuery': pmfapi.c:1893:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiSeqIdSetSynchronousQuery': pmfapi.c:1944:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnListSynchronousQuery': pmfapi.c:1994:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtax3.c objtax3.c: In function 'Taxon3RequestAsnRead': objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RequestFree': objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'SequenceOfIntAsnRead': objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Taxon3ReplyAsnRead': objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ReplyFree': objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ErrorAsnRead': objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3DataAsnRead': objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Value_valueFree': objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RefreshFlagsAsnRead': objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objtax3.c: In function 'T3ReplyAsnRead': objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3RequestAsnRead': objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c:1361:10: note: 'choice' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tax3api.c tax3api.c: In function 'Tax3SynchronousQuery': tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'CheckSuggestedFixes': tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'TryNewSuggestedFixes': tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'GetSuggestedNamesFromRank': tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'BioSourceFromBioSample': tax3api.c:3220:16: warning: unused variable 'max' [-Wunused-variable] tax3api.c: At top level: tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function] tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function] tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function] tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function] tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function] tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objegkludge.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentgene.c objentgene.c: In function 'EntrezgeneAsnRead': objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'EntrezgeneSetAsnRead': objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'EntrezgeneSetAsnWrite': objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'GeneTrackAsnRead': objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'GeneCommentaryAsnRead': objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'Method_methodFree': objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'Method_methodAsnRead': objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'GeneSourceAsnRead': objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'XtraTermsAsnRead': objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'OtherSourceAsnRead': objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objentgene.c:1166:10: note: 'choice' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmla2.c objmla2.c: In function 'Mla2RequestFree': objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsg2AsnRead': objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsgList2AsnRead': objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla2.c: In function 'Mla2BackAsnRead': objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mla2api.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF qblastapi.c qblastapi.c: In function 'SecondQBlastCallback': qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx': qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx': qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscnapi.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmim.c objmim.c: In function 'MimSetAsnRead': objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimDateAsnRead': objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEntryAsnRead': objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimCitAsnRead': objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimTextAsnRead': objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEditItemAsnRead': objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAllelicVariantAsnRead': objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimIndexTermAsnRead': objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimReferenceAsnRead': objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimLinkAsnRead': objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAuthorAsnRead': objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimPageAsnRead': objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objvalid.c objvalid.c: In function 'FieldRuleAsnRead': objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnRead': objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnWrite': objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldRuleAsnRead': objvalid.c:390:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:389:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnRead': objvalid.c:573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:570:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnWrite': objvalid.c:626:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentRuleAsnRead': objvalid.c:708:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:707:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnRead': objvalid.c:898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:895:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnWrite': objvalid.c:951:12: warning: unused variable 'av' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mimapi.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddapi.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqport.c seqport.c: In function 'productLoc_to_locationLoc': seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable] seqport.c: In function 'NaLocFromNaInterval': seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable] seqport.c: In function 'dnaLoc_to_aaLoc': seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable] seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable] seqport.c: In function 'DeltaRevComp': seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] seqport.c: In function 'SeqSearchEnterNucWord': seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: In function 'ProtSearchEnterProtWord': seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sequtil.c sequtil.c: In function 'GetPointsForLeftAndRightOffsets': sequtil.c:7959:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqPointWriteEx': sequtil.c:8492:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'TaxNameFromCommon': sequtil.c:8648:5: warning: missing braces around initializer [-Wmissing-braces] sequtil.c:8648:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces] sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr': sequtil.c:9470:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqIdFromAccessionEx': sequtil.c:10070:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'BSCompressDNAOld': sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GenericCompressDNAEx': sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'BSConvertSeq': sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'SeqLocCoverage': sequtil.c:6905:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GetThePointForOffsetEx': sequtil.c:7919:14: warning: 'last_strand' may be used uninitialized in this function [-Wuninitialized] sequtil.c:7900:14: warning: 'first_strand' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtutil.c prtutil.c: In function 'StdFormatPrint': prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simple.c In file included from simple.c:69:0: ../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default] ../include/all.h:5745:0: note: this is the location of the previous definition simple.c: In function 'SimpleSeqAsnRead': simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wuninitialized] simple.c:170:17: note: 'b' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofasta.c tofasta.c: In function 'DoSpecialDefline': tofasta.c:1407:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] tofasta.c: At top level: tofasta.c:3072:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function] tofasta.c:3101:16: warning: 'get_descr' defined but not used [-Wunused-function] tofasta.c:3196:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function] tofasta.c:3359:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function] tofasta.c:3445:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function] tofasta.c:3479:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2736:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c:2761:18: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c: In function 'FastaReadSequenceInternalEx': tofasta.c:2476:43: warning: 'mask_to' may be used uninitialized in this function [-Wuninitialized] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2852:19: warning: 'fd' may be used uninitialized in this function [-Wuninitialized] tofasta.c:2672:25: warning: 'firstchar' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofile.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tomedlin.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valid.c valid.c: In function 'Valid1GatherProc': valid.c:2238:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqIdCase': valid.c:3342:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateGenProdSet': valid.c:5551:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable] valid.c: In function 'CountAdjacentProc': valid.c:6193:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqInst': valid.c:6584:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable] valid.c:6526:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioSource': valid.c:13688:19: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateDblink': valid.c:14737:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqDescrCommon': valid.c:14795:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContextIndexed': valid.c:17742:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] valid.c:17154:41: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBarcodeIndexNumber': valid.c:18667:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContext': valid.c:18775:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateRptUnit': valid.c:20323:32: warning: variable 'found' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForCommonCDSProduct': valid.c:22238:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable] valid.c:22235:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForIllegalDbxref': valid.c:22617:16: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateAnticodon': valid.c:23348:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable] valid.c:23347:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c: In function 'IsGeneXrefRedundant': valid.c:24599:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqFeat': valid.c:24763:19: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c:24741:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'CdTransCheck': valid.c:26675:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable] valid.c: In function 'SpliceCheckEx': valid.c:27477:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable] valid.c: In function 'CdsProductIdCheck': valid.c:27823:15: warning: variable 'grp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqLoc': valid.c:27887:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c:27886:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] valid.c: At top level: valid.c:1415:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function] valid.c:4089:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function] valid.c:5438:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function] valid.c:6450:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function] valid.c:9394:16: warning: 'ConsistentWithC' defined but not used [-Wunused-function] valid.c:12157:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function] valid.c:12959:16: warning: 'LatLonInRange' defined but not used [-Wunused-function] valid.c:13056:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function] valid.c:18292:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function] valid.c:18342:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function] valid.c:24281:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valapi.c valapi.c: In function 'DoesStringMatchExpression': valapi.c:253:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable] valapi.c: In function 'ReorderStructuredCommentFields': valapi.c:777:82: warning: unused variable 'ufp_last' [-Wunused-variable] valapi.c:777:72: warning: unused variable 'ufp_next' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr.c alignmgr.c: In function 'AlnMgrIndexParentSA': alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] alignmgr.c: In function 'AlnMgrGetNthBlockRange': alignmgr.c:4182:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx': alignmgr.c:5157:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMapBioseqToBioseq': alignmgr.c:10840:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable] alignmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr.c:5405:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function] alignmgr.c:10572:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function] alignmgr.c:6123:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function] alignmgr.c:6650:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function] alignmgr.c: In function 'AlnMgrUnpackSeqAlign': alignmgr.c:1149:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList': alignmgr.c:1755:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA': alignmgr.c:4115:19: warning: 'tmp_end' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:4113:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'am_is_consistent': alignmgr.c:10114:43: warning: 'n' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetSubAlign': alignmgr.c:9097:15: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster': alignmgr.c:5829:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5553:17: note: 'sip_tmp' was declared here alignmgr.c:5881:25: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5846:18: note: 'sip_tmp' was declared here alignmgr.c:5865:11: warning: 'sip_head' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5845:18: note: 'sip_head' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliparse.c aliparse.c: In function 's_IsInterleaved': aliparse.c:930:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterId': aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterSeq': aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeInterleaved': aliparse.c:1193:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_ProcessContigId': aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessContigSeq': aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeContiguous': aliparse.c:1603:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_CheckContext': aliparse.c:2151:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 'PrintOutMultAlign': aliparse.c:3161:10: warning: statement with no effect [-Wunused-value] aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable] aliparse.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function] aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function] aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function] aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function] aliparse.c: In function 's_GetRowIdString': aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 's_ProcessMaybes': aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wuninitialized] aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 'Ali_Read': aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wuninitialized] aliparse.c:1154:20: note: 'previousLength' was declared here aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wuninitialized] aliparse.c:820:20: note: 'seqLinePtr' was declared here aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliread.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignval.c alignval.c: In function 'ValidateSeqlengthInDenseSeg': alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] alignval.c: In function 'PercentStringMatch': alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'CheckAlnSeqLens': alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'ValidateSeqAlign': alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] alignval.c: In function 'GetAlignmentColumnPercentIdentities': alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: In function 'WeightedAlignmentPercentIdentity': alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function] alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function] alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil1.c sqnutil1.c: In function 'GeneExtendFunc': sqnutil1.c:2514:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseAnticodon': sqnutil1.c:3961:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseCodeBreak': sqnutil1.c:4081:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'CleanOrgModListEx': sqnutil1.c:6280:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sqnutil1.c: In function 'CleanUpPubdescAuthors': sqnutil1.c:9213:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs': sqnutil1.c:14155:24: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'LinkTwoFeatures': sqnutil1.c:18204:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback': sqnutil1.c:18750:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable] sqnutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil1.c:2509:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function] sqnutil1.c:5290:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function] sqnutil1.c:7645:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function] sqnutil1.c:10250:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function] sqnutil1.c:10364:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil2.c sqnutil2.c: In function 'FindResidueByName': sqnutil2.c:5197:11: warning: variable 'last' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFeatureTableEx': sqnutil2.c:7202:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable] sqnutil2.c:7194:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'SeqEntryCopyReplace': sqnutil2.c:9199:8: warning: variable 'type' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamingReadBioseq': sqnutil2.c:10024:10: warning: variable 'level' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamAsnForDescriptors': sqnutil2.c:10257:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'StreamingReadWriteSeqSubmit': sqnutil2.c:10637:1: warning: label 'ret' defined but not used [-Wunused-label] sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors': sqnutil2.c:10676:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'ReadFeatureTableFile': sqnutil2.c:11627:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFastaOnly': sqnutil2.c:11821:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline': sqnutil2.c:12352:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'PrintQualityScoresToBuffer': sqnutil2.c:12958:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'GetScoresbySeqId': sqnutil2.c:13367:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'IsStringInSpanInList': sqnutil2.c:17223:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable] sqnutil2.c:17221:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'CreateStructuredCommentsFromFile': sqnutil2.c:19251:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'AlignmentIntervalToString': sqnutil2.c:19615:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable] sqnutil2.c:19614:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'AdjustForConsensusSpliceCallback': sqnutil2.c:20781:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'RemoveGIProc': sqnutil2.c:21356:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sqnutil2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil2.c:4661:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function] sqnutil2.c:8266:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function] sqnutil2.c:16055:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil3.c sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap': sqnutil3.c:526:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CautiousSeqEntryCleanup': sqnutil3.c:2265:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences': sqnutil3.c:3376:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sqnutil3.c:3370:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx': sqnutil3.c:5124:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable] sqnutil3.c:5118:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable] sqnutil3.c:5118:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'GetCDSformRNA': sqnutil3.c:19157:8: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'FindTextInFlatfileEx': sqnutil3.c:20891:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CheckForTitleAuthorConflicts': sqnutil3.c:21972:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'SortVnpByBspProjectId': sqnutil3.c:25733:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress] sqnutil3.c: In function 'GetDiscrepancyItemTextEx': sqnutil3.c:28202:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable] sqnutil3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil3.c:9621:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function] sqnutil3.c:9672:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function] sqnutil3.c:9755:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function] sqnutil3.c:10252:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function] sqnutil3.c:13399:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function] sqnutil3.c:16581:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function] sqnutil3.c:18676:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function] sqnutil3.c:19971:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function] sqnutil3.c:23725:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function] sqnutil3.c:31396:13: warning: 'FindBadGPS' defined but not used [-Wunused-function] sqnutil3.c:31404:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function] sqnutil3.c:33544:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function] sqnutil3.c: In function 'FillInMissingTraces': sqnutil3.c:31968:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback': sqnutil3.c:889:23: warning: 'best_diff' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'ValidateInferenceQualifier': sqnutil3.c:6033:6: warning: 'rest' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c:6087:13: warning: 'best' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'CheckForDivConflicts': sqnutil3.c:7901:28: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'tRNASameStrandBioseqCallback': sqnutil3.c:16126:8: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'FindMismatchedComments': sqnutil3.c:25390:47: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'FixCountryColons': sqnutil3.c:7523:14: warning: 'biop' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'AddmRNAForCDS': sqnutil3.c:19565:3: warning: 'rna' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil4.c sqnutil4.c: In function 'ListClauses': sqnutil4.c:8272:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'SmashOneTallClause': sqnutil4.c:9576:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'GetFeatureClauseForSeg': sqnutil4.c:10448:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'IsAmplifiedMiscFeat': sqnutil4.c:10702:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:13849:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ExtraCDSCreationActions': sqnutil4.c:14728:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'TESTDisplayQualCombo': sqnutil4.c:15752:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS': sqnutil4.c:17198:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'AddNewUniqueAnnotations': sqnutil4.c:17372:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'AssignBioseqToLineageGroup': sqnutil4.c:18024:27: warning: variable 'vnp_last' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ImportNucleotideFASTASequencesFromFile': sqnutil4.c:26442:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil4.c:4945:13: warning: 'CountFeatures' defined but not used [-Wunused-function] sqnutil4.c:9510:13: warning: 'RemoveFeats' defined but not used [-Wunused-function] sqnutil4.c:9674:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function] sqnutil4.c:9705:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function] sqnutil4.c:15584:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function] sqnutil4.c:15872:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function] sqnutil4.c:15901:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:14023:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF subutil.c subutil.c: In function 'AddSeqLitToBioseq': subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] subutil.c: In function 'AddReferenceToSegmentedEntry': subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable] subutil.c: In function 'GetDNAConv': subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'GetProteinConv': subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddBasesToByteStore': subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddAAsToByteStore': subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'CitArtBuild': subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] subutil.c: At top level: subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function] subutil.c: In function 'AddGapToSegmentedEntry': subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF edutil.c edutil.c: In function 'SeqLocsToDeltaSeqs': edutil.c:795:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocCopyPart': edutil.c:2243:13: warning: variable 'done' set but not used [-Wunused-but-set-variable] edutil.c: In function 'IndexedSeqFeatsCopy': edutil.c:2400:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqFeatsCopy': edutil.c:2504:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocInsert': edutil.c:3686:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdRecreateDeletedFeats': edutil.c:4212:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocInsert': edutil.c:4512:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocDelete': edutil.c:5069:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdInsertAdjustFeat': edutil.c:5300:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c: In function 'SeqEdDeleteFromBsp': edutil.c:6485:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6548:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6437:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable] edutil.c:6428:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable] edutil.c: In function 'BioseqCopyEx': edutil.c:2152:25: warning: 'head' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff1.c asn2ff1.c: In function 'asn2ff_print': asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable] asn2ff1.c: In function 'Asn2ffJobCreate': asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'SeqEntryToEntrez': asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable] asn2ff1.c: In function 'SeqLocToFlat': asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'asn2ff_setup': asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] asn2ff1.c: In function 'PrintStatusLine': asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable] asn2ff1.c: In function 'asn2gb_setup': asn2ff1.c:2403:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff1.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function] asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function] asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function] asn2ff1.c: In function 'asn2gp_setup': asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'asn2embl_setup': asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq': asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff2.c asn2ff2.c: In function 'GetStrForBankit': asn2ff2.c:518:9: warning: unused variable 'i' [-Wunused-variable] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:769:34: warning: unused variable 'string' [-Wunused-variable] asn2ff2.c: In function 'GP_GetSeqDescrComms': asn2ff2.c:1163:10: warning: unused variable 'got_comment' [-Wunused-variable] asn2ff2.c: At top level: asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff2.c: In function 'GetGibbsqCommentLength': asn2ff2.c:1600:7: warning: unused variable 'gibbsq' [-Wunused-variable] asn2ff2.c: In function 'GatherDescrByChoice': asn2ff2.c:1864:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable] asn2ff2.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff2.c:232:16: warning: 'has_comment' defined but not used [-Wunused-variable] asn2ff2.c:680:16: warning: 'GetEvidence' defined but not used [-Wunused-function] asn2ff2.c:1190:16: warning: 'GetSPBlock' defined but not used [-Wunused-function] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:829:8: warning: 'is_other' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff3.c asn2ff3.c: In function 'PutGeneFirst': asn2ff3.c:1662:26: warning: unused variable 'qual_temp' [-Wunused-variable] asn2ff3.c:1661:10: warning: unused variable 'still_looking' [-Wunused-variable] asn2ff3.c: In function 'mRNAEvidenceComment': asn2ff3.c:1746:9: warning: unused variable 'Locus_id' [-Wunused-variable] asn2ff3.c: In function 'Add_gene_id': asn2ff3.c:3306:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat] asn2ff3.c: In function 'Add_trid': asn2ff3.c:3712:7: warning: unused variable 'gi' [-Wunused-variable] asn2ff3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff3.c:3291:13: warning: 'Add_gene_id' defined but not used [-Wunused-function] asn2ff3.c: In function 'GettRNAaa': asn2ff3.c:2207:6: warning: 'seq_code' may be used uninitialized in this function [-Wuninitialized] asn2ff3.c: In function 'Add_dbxref.isra.0': asn2ff3.c:858:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff4.c asn2ff4.c: In function 'FlatLocPoint': asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'do_FlatLoc': asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff4.c: At top level: asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff4.c: In function 'CreateImpFeatFromProt': asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchNAGeneToFeat': asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchAAGeneToFeat': asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff4.c: In function 'CheckNewSfpLoc': asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff5.c asn2ff5.c: In function 'format_cit_sub': asn2ff5.c:1023:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_thesis': asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_book': asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_jourarticle': asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff5.c: In function 'StripParanthesis': asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value] asn2ff5.c: In function 'PostARefErrMessage': asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable] asn2ff5.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function] asn2ff5.c: In function 'CheckPubs': asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c: In function 'FlatJournal': asn2ff5.c:1946:23: warning: 'temp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1151:10: warning: 'afp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1051:11: note: 'afp' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff6.c asn2ff6.c: In function 'AddGBQual': asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'BioseqGetGBDivCodeEx': asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'GR_PrintPubs': asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable] asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable] asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable] asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'ValidateOtherAccession': asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable] asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable] asn2ff6.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2866:33: warning: 'exp' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'MakeBaseLocusAwp': asn2ff6.c:3093:17: warning: 'num_of_digits' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c asn2gnb1.c: In function 'IsWholeWordSubstr': asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoOneSection': asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'Count2Seg': asn2gnb1.c:3215:18: warning: variable 'to' set but not used [-Wunused-but-set-variable] asn2gnb1.c:3213:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: asn2gnb1.c:3492:3: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3492:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces] asn2gnb1.c: In function 'SeqIdWriteForTable': asn2gnb1.c:5571:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] asn2gnb1.c:5570:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoImmediateFormat': asn2gnb1.c:6704:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c:6683:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'asn2gnbk_format': asn2gnb1.c:6825:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c: In function 'asn2gnbk_cleanup': asn2gnb1.c:6871:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'SeqEntryToGnbk': asn2gnb1.c:7057:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable] asn2gnb1.c:7052:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c asn2gnb2.c: In function 's_LocusAddSuffix': asn2gnb2.c:206:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'AddLocusBlock': asn2gnb2.c:1323:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb2.c: In function 'AddDblinkBlock': asn2gnb2.c:2756:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'GetRefsOnBioseq': asn2gnb2.c:5448:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5445:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5439:22: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5433:22: warning: variable 'left' set but not used [-Wunused-but-set-variable] asn2gnb2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c asn2gnb3.c: In function 'GetStatusForRefTrack': asn2gnb3.c:601:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetSourcesOnBioseq': asn2gnb3.c:4151:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4149:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4148:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnCdsProduct': asn2gnb3.c:5007:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct': asn2gnb3.c:5155:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5154:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5153:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5152:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5151:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnBioseq': asn2gnb3.c:5376:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5349:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable] asn2gnb3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c asn2gnb4.c: In function 'FormatFeatureBlockQuals': asn2gnb4.c:3591:50: warning: "/*" within comment [-Wcomment] asn2gnb4.c:2969:24: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c:2910:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FF_asn2gb_www_featkey': asn2gnb4.c:5180:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:6354:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat': asn2gnb4.c:8448:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: In function 'FormatFeatureQuals': asn2gnb4.c:8521:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:7398:24: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c asn2gnb5.c: In function 'FormatCitBookArt': asn2gnb5.c:1874:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] asn2gnb5.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c asn2gnb6.c: In function 'FlatLocElement': asn2gnb6.c:2390:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb6.c: In function 'FormatContigBlock': asn2gnb6.c:5401:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] asn2gnb6.c: In function 'FormatSequenceBlock': asn2gnb6.c:5855:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb6.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ftusrstr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfeat.c gbfeat.c: In function 'CkLabelType': gbfeat.c:1530:4: warning: suggest parentheses around '&&' within '||' [-Wparentheses] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbftglob.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbparint.c gbparint.c: In function 'Nlm_gbparselex': gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gbparint.c: In function 'Nlm_gbparselex_ver': gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpars.c utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces] utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpub.c utilpub.c: In function 'FindCit': utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] utilpub.c: In function 'ChangeCitQual': utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable] utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ffprint.c ffprint.c: In function 'FFBSPrint': ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable] ffprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wprint.c wprint.c: In function 'LocPrintGenome': wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable] wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable] wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable] wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable] wprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable] wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable] wprint.c: In function 'www_xref': wprint.c:1376:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c:1376:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'www_xref_button': wprint.c:1419:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c:1419:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'PrintSPBlock': wprint.c:1443:24: warning: 's' may be used uninitialized in this function [-Wuninitialized] wprint.c:1601:13: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF satutil.c satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] satutil.c: At top level: satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function] satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmgr.c seqmgr.c: In function 'SeqEntrySetScope': seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'ClearBioseqFindCache': seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp': seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'CheckForTransSplice': seqmgr.c:5644:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqEntryAsnOut': seqmgr.c:11692:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable] seqmgr.c:11692:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable] seqmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqmgr.c: In function 'SeqMgrGetNextDescriptor': seqmgr.c:9580:56: warning: 'bssp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmgr.c objmgr.c: In function 'ObjMgrSelectFunc2': objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable] objmgr.c: In function 'ObjMgrAlsoSelect': objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] objmgr.c:4030:22: note: 'ssp' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gather.c gather.c: In function 'AttachDataProc': gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable] gather.c: In function 'GatherSeqFeat': gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wuninitialized] gather.c:1530:56: warning: 'max_interval' may be used uninitialized in this function [-Wuninitialized] gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'gather_align_data': gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wuninitialized] gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'GatherBioseqFunc': gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wuninitialized] gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wuninitialized] gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accmmdbs.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acccn3ds.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lsqfetch.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF findrepl.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF codon.c codon.c: In function 'make_cds_paragraph': codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzcoll.c jzcoll.c: In function 'load_default_matrix': jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c: In function 'GetUseThisGi': jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable] jzcoll.c: In function 'buffer_for_feature': jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable] jzcoll.c: In function 'ProcessTextInsertion': jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'satcollfunc': jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable] jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable] jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable] jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable] jzcoll.c: In function 'collect_anpnode_with_option': jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable] jzcoll.c: In function 'ck_seqfeat_extra': jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable] jzcoll.c: In function 'load_open_close_sts_mark': jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'FeatNodeCompProc': jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable] jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable] jzcoll.c: At top level: jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function] jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function] jzcoll.c: In function 'load_text': jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzmisc.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF maputil.c maputil.c: In function 'load_gene_list': maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable] maputil.c: In function 'gmarkfunc': maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mconsist.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macroapi.c macroapi.c: In function 'AdvancedStringCompare': macroapi.c:4416:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'RemoveGBQualMatch': macroapi.c:6919:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetNameInPrimerList': macroapi.c:10517:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetSeqInPrimerList': macroapi.c:10538:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetCitListsForSeqEntry': macroapi.c:15443:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c:15441:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetPubMLStatus': macroapi.c:17914:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat': macroapi.c:24814:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat': macroapi.c:24937:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat': macroapi.c:25004:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'FindPosBeforeFeat': macroapi.c:25301:15: warning: variable 'regulator' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'PerformAutofixInSeqEntry': macroapi.c:28058:8: warning: unused variable 'num_created' [-Wunused-variable] macroapi.c: In function 'AddFileDescriptors': macroapi.c:28453:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] macroapi.c: In function 'PreprocessAddDescriptorListMacro': macroapi.c:30069:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] macroapi.c: In function 'SummarizeRemoveOutsideAction': macroapi.c:30940:11: warning: unused variable 'case_insensitive' [-Wunused-variable] macroapi.c: In function 'GetObjectTableForTabTable': macroapi.c:35366:63: warning: variable 'last' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'CheckObjTableForExistingText': macroapi.c:35930:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'FixSuspectProductNamesInEntrezGene': macroapi.c:38178:18: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] macroapi.c: At top level: macroapi.c:1189:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function] macroapi.c:2760:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function] macroapi.c:4543:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function] macroapi.c:5435:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function] macroapi.c:10224:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function] macroapi.c:15632:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function] macroapi.c:35102:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function] macroapi.c:20392:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function] macroapi.c:26150:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function] macroapi.c: In function 'GetFeatureListForProteinBioseq': macroapi.c:34248:10: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToSite': macroapi.c:24223:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToBond': macroapi.c:24176:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetAuthorListFromString': macroapi.c:14074:30: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'GetSourceQualFromBioSource': macroapi.c:10861:47: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'GetMultipleSourceQualsFromBioSource': macroapi.c:11008:45: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'RemoveSourceQualFromBioSource': macroapi.c:11189:52: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'CaptureRefBlockSerialNumbers': macroapi.c:15424:26: warning: 'ppr' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetFieldValueForObjectEx': macroapi.c:13405:29: warning: 'ipp' may be used uninitialized in this function [-Wuninitialized] macroapi.c:13352:21: note: 'ipp' was declared here macroapi.c:13350:21: warning: 'cpp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetDBxrefForBioSource': macroapi.c:22815:12: warning: 'dbtag' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpedit.c salpedit.c: In function 'SeqAlignInsert': salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] salpedit.c: At top level: salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function] salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function] salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function] salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function] salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function] salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function] salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function] salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function] salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function] salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function] salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function] salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function] salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function] salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function] salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function] salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function] salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function] salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function] salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function] salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpstat.c salpstat.c: In function 'DenseSegStats': salpstat.c:310:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] salpstat.c: In function 'SeqAlignScoreFix': salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'DenseSegStats': salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wuninitialized] salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScoreFN': salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wuninitialized] salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScore': salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpacc.c salpacc.c: In function 'SeqAlignStrand': salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable] salpacc.c: In function 'SeqAlignStop': salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wuninitialized] salpacc.c:495:17: warning: 'val' may be used uninitialized in this function [-Wuninitialized] salpacc.c: In function 'SeqAlignMolType': salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salprop.c salprop.c: In function 'CopySeqLocFromSeqAlign': salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] salprop.c: In function 'FeatListToProp': salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable] salprop.c: At top level: ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salprop.c: In function 'ApplyNewSeqFeat': salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salprop.c:514:17: note: 'stop' was declared here salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] salprop.c:674:17: note: 'sfp' was declared here salprop.c:734:23: warning: 'ppp.p5' may be used uninitialized in this function [-Wuninitialized] salprop.c:679:17: note: 'ppp.p5' was declared here salprop.c:737:29: warning: 'ppp.p3' may be used uninitialized in this function [-Wuninitialized] salprop.c:679:17: note: 'ppp.p3' was declared here salprop.c:861:33: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salprop.c: In function 'MergeFunc': salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wuninitialized] salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsap.c salsap.c: In function 'DenseDiagToDenseSegFunc': salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable] salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable] salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable] salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable] salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable] salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable] salsap.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function] salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function] salsap.c: In function 'CleanStrandsSeqAlign': salsap.c:1605:32: warning: 'dim' may be used uninitialized in this function [-Wuninitialized] salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wuninitialized] salsap.c:1605:32: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'LocalAlignToSeqAnnotDimn': salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'multseqalign_from_pairseqalign': salsap.c:4498:22: warning: 'strandp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salstruc.c salstruc.c: In function 'data_collect_arrange': salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable] salstruc.c: In function 'ShowAlignmentText': salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable] salstruc.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salstruc.c: In function 'next_notemptyline': salstruc.c:375:19: warning: 'str' may be used uninitialized in this function [-Wuninitialized] salstruc.c: In function 'data_collect_arrange': salstruc.c:920:20: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:872:19: note: 'entityID' was declared here salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:1005:17: note: 'entityID' was declared here salstruc.c: In function 'ShowAlignmentText': salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salutil.c salutil.c: In function 'ReadBufferFromSap': salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable] salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable] salutil.c: In function 'IS_protSeqLoc': salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable] salutil.c: In function 'ReplaceSeqIdWithSeqId': salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable] salutil.c: In function 'del_ssp_fromid': salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable] salutil.c: In function 'checkCDSselect_forprotein': salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salutil.c: In function 'NoMoreSegGapForOneAlignment': salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration] salutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salutil.c: In function 'del_ssp_fromid': salutil.c:1750:30: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] salutil.c: In function 'sesp_to_slp': salutil.c:1974:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvseq.c udvseq.c: In function 'UDV_EncodeIdxFeat': udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] udvseq.c: In function 'UDV_BigEncodeIdxFeat': udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blocks.c blocks.c: In function 'IndexBlocks': blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'IndexNewBlocks': blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'GetBlockOrientation': blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SAMergeBlocks': blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wuninitialized] blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wuninitialized] blocks.c:1509:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wuninitialized] blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SASplitBlock': blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pgppop.c pgppop.c:309:4: warning: missing braces around initializer [-Wmissing-braces] pgppop.c:309:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] pgppop.c: In function 'DDV_WWW_get_CDS_minus': pgppop.c:578:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c:576:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'DDV_WWW_get_CDS_plus': pgppop.c:700:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'GetClrFromClrGlobal': pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c: In function 'DDV_DisplayTopScale': pgppop.c:1549:7: warning: unused variable 'szBlank' [-Wunused-variable] pgppop.c: In function 'DDV_GetBLASTCompLine_1': pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c: In function 'DDV_DisplayDefaultAlign': pgppop.c:3417:13: warning: unused variable 'sabp' [-Wunused-variable] pgppop.c: In function 'DDV_ShowSeqAlign': pgppop.c:3760:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable] pgppop.c:3758:10: warning: unused variable 'szPopSetName' [-Wunused-variable] pgppop.c: In function 'DDV_PrintPopSetSummary': pgppop.c:3931:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable] pgppop.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] pgppop.c:563:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function] pgppop.c:2090:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function] pgppop.c:2865:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function] pgppop.c:2912:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function] pgppop.c: In function 'DDV_PopDisplay2': pgppop.c:1246:23: warning: 'pgp2' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1253:14: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] pgppop.c: In function 'DDV_Print_Sequence': pgppop.c:1343:38: warning: 'idx' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1308:9: note: 'idx' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF samutil.c samutil.c: In function 'DDE_FreeStack': samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Add': samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point] samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Prev': samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Next': samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_ShowRow': samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_AddGapToEndOfAllRows': samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightAddNode': samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_LeftMergeAndAddNodeList': samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightMergeAndAddNodeList': samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_ShiftRightBoundaryLeft1': samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_CreateArraysForDenseSeg': samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_GetLastVNP': samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_GetNumResidues': samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_RemoveGapFromEndOfAllRows': samutil.c:3287:15: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3272:15: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_AddAGap': samutil.c:2659:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3375:15: note: 'last_vnp' was declared here samutil.c: In function 'DDE_AddGapToEndOfAllRows': samutil.c:3356:9: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftLeftList': samutil.c:4161:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_RemoveGap': samutil.c:3092:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftRowLeft1': samutil.c:2563:13: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftRowRight1': samutil.c:2594:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_LastColumnIsAligned': samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftRightBoundaryLeft1': samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3375:15: note: 'last_vnp' was declared here samutil.c: In function 'DDE_ShiftRightBoundaryRight1': samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3375:15: note: 'last_vnp' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcolor.c ddvcolor.c: In function 'DDV_GetColor': ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable] ddvcolor.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewmgr.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcreate.c ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces] ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1': ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2': ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2': ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable] ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_DisplayNewBLAST': ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4': ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ddvcreate.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function] ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function] ddvcreate.c: In function 'UAMgrIntUAMsg': ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:73: note: 'stop_middle' was declared here ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:60: note: 'start_middle' was declared here ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here ddvcreate.c: In function 'DDV_PopulateDisplayForDisc': ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'UABuildDescriptor2': ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_DumpSAPInAFile': ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_ReadSeqBin': ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jsavlt.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF needleman.c needleman.c: In function 'NeedlemanWunschQuadraticByLoc': needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable] needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable] needleman.c: In function 'FetchSequenceByLoc': needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF txalign.c txalign.c: In function 'addLinkoutForDefline': txalign.c:706:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'addLinkoutForBioseq': txalign.c:774:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'load_align_sum_for_StdSeg': txalign.c:2748:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c: In function 'ShowAlignNodeText2Ex': txalign.c:3548:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable] txalign.c: In function 'Tx_PrintDefLine': txalign.c:4597:7: warning: unused variable 'seqid_length' [-Wunused-variable] txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath': txalign.c:5012:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] txalign.c:5016:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c:4718:10: warning: unused variable 'ColumnDistance' [-Wunused-variable] txalign.c:4710:43: warning: unused variable 'sip_list' [-Wunused-variable] txalign.c:4706:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFromSeqAlignEx': txalign.c:5335:25: warning: unused variable 't_adj' [-Wunused-variable] txalign.c:5334:29: warning: unused variable 'last_t_to' [-Wunused-variable] txalign.c: In function 'FSFPrintOneDefline': txalign.c:5443:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFunc': txalign.c:5660:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFShowSingleAlignment': txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6093:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFDisplayTraceBack1': txalign.c:6581:33: warning: unused variable 'st' [-Wunused-variable] txalign.c:6581:9: warning: unused variable 'tmp' [-Wunused-variable] txalign.c: In function 'OOFDisplayTraceBack2': txalign.c:6655:33: warning: unused variable 'st' [-Wunused-variable] txalign.c: In function 'FDGetTaxNamesFromBioseq': txalign.c:6757:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable] txalign.c: At top level: txalign.c:630:16: warning: 'getNameInitials' defined but not used [-Wunused-function] txalign.c:828:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function] txalign.c:2338:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function] txalign.c:3433:1: warning: 'get_seq_id' defined but not used [-Wunused-function] txalign.c: In function 'CreateMaskByteStore': txalign.c:940:4: warning: 'mol' may be used uninitialized in this function [-Wuninitialized] txalign.c:988:8: note: 'mol' was declared here txalign.c: In function 'OOFShowSingleAlignment.isra.6': txalign.c:6048:5: warning: 'dna_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6089:32: note: 'dna_line_start' was declared here txalign.c:6048:5: warning: 'pro_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6089:48: note: 'pro_line_start' was declared here txalign.c: In function 'find_score_in_align': txalign.c:2598:33: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2498:20: note: 'smtp' was declared here txalign.c:2462:11: warning: 't_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2394:23: note: 't_spp' was declared here txalign.c:2459:14: warning: 'm_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2394:16: note: 'm_spp' was declared here txalign.c: In function 'ShowAlignNodeText2Ex.isra.7': txalign.c:2284:11: warning: 'm_len' may be used uninitialized in this function [-Wuninitialized] txalign.c:3543:10: note: 'm_len' was declared here txalign.c: In function 'ShowTextAlignFromAnnot3': txalign.c:1244:13: warning: 'retval' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fdlobj.c fdlobj.c: In function 'BlastDefLineSetAsnRead': fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] fdlobj.c: In function 'BlastDefLineAsnRead': fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr2.c alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA': alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2CopySeg': alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA': alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2SetUnaln': alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2PrintSeqAlign': alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign': alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable] alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable] alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] alignmgr2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function] alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function] alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function] alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function] alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc': alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IndexLite': alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6099:27: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength': alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6165:19: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA': alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA': alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetAlnLength': alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6757:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5757:84: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:5808:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli': alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks': alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthBlockRange': alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow': alignmgr2.c:6909:40: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextLengthBit': alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange': alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7169:9: warning: 'aligncoords' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign': alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq': alignmgr2.c:7695:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetSubAlign': alignmgr2.c:8248:34: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2FillInUnaligned': alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alnread.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acerdapi.c acerdapi.c: In function 'DoesSeqStringMatchBsp': acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] acerdapi.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aceread.c aceread.c:134:12: warning: 's_IsGapChar' defined but not used [-Wunused-function] aceread.c:247:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function] aceread.c:276:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function] aceread.c:3308:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function] aceread.c: In function 's_ReadContig': aceread.c:1477:38: warning: 'linestring' may be used uninitialized in this function [-Wuninitialized] rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdentrez.c cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function] cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function] cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable] cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c: In function 'CdEntrezMergeTerm': cdentrez.c:2665:27: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdLinkUidList': cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdTermListByTerm': cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntrezFindTerm': cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntTLAddTerm': cdentrez.c:1895:33: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:1787:13: note: 'total' was declared here cdentrez.c: In function 'CdEntMedlineEntryListGet': cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdromlib.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdnewlib.c cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces] cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces] cdnewlib.c: In function 'cd3_CdDocAsnOpen': cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable] cdnewlib.c: In function 'CdDevice_Init': cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable] cdnewlib.c: At top level: cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function] cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function] cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function] cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function] cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable] cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable] cdnewlib.c: In function 'UnixFileGets': cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'trmncmp': cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wuninitialized] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function 'strncat', inlined from 'CdDevice_FileBuildPath.part.11' at cdnewlib.c:2679:12, inlined from 'CdDevice_FileBuildPath' at cdnewlib.c:2662:12: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.14' at cdnewlib.c:2751:10: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.14' at cdnewlib.c:2769:13: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] cdnewlib.c: In function 'UidIndex_Lookup': cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:1986:30: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'TrmIndex_Lookup': cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:12: warning: 'd' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:24: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF casn.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdconfig.c cdconfig.c: In function 'ChangeMedia': cdconfig.c:941:29: warning: statement with no effect [-Wunused-value] cdconfig.c:960:17: warning: statement with no effect [-Wunused-value] cdconfig.c: At top level: cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function] cdconfig.c: In function 'EntrezInfoMerge': cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentr.c objentr.c: In function 'DocSumAsnRead': objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable] objentr.c: At top level: objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function] objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function] objentr.c: In function 'EntrezInfoAsnRead': objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wuninitialized] objentr.c:241:17: note: 'div' was declared here objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wuninitialized] objentr.c:240:18: note: 'link' was declared here objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wuninitialized] objentr.c:239:19: note: 'fld' was declared here objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wuninitialized] objentr.c:238:18: note: 'tinf' was declared here objentr.c:856:16: warning: 'i' may be used uninitialized in this function [-Wuninitialized] objentr.c:824:7: note: 'i' was declared here rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibfiles.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibforms.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewDialogTextWithFont': vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialTextWithFont': vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawing.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF picture.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF diagnost.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictur3d.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d1.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d2.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d3.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d4.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d5.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmouse.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF imagelst.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF treeview.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF shim3d.c shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable] shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable] shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable] shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable] shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable] shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable] shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable] shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable] shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable] shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable] shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable] shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable] shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable] shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable] shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable] shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable] shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable] shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable] shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable] shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable] shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable] shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable] shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable] shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable] shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable] shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable] shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable] shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable] shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable] shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable] shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a mv vibbutns.o vibbutns.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] mv vibbutns.o vibbutns.glo mv vibbutns.tmp vibbutns.o mv vibextra.o vibextra.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] mv vibextra.o vibextra.glo mv vibextra.tmp vibextra.o mv vibfiles.o vibfiles.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c mv vibfiles.o vibfiles.glo mv vibfiles.tmp vibfiles.o mv vibforms.o vibforms.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c mv vibforms.o vibforms.glo mv vibforms.tmp vibforms.o mv vibgroup.o vibgroup.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] mv vibgroup.o vibgroup.glo mv vibgroup.tmp vibgroup.o mv viblists.o viblists.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] mv viblists.o viblists.glo mv viblists.tmp viblists.o mv vibmenus.o vibmenus.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] mv vibmenus.o vibmenus.glo mv vibmenus.tmp vibmenus.o mv vibprmpt.o vibprmpt.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] mv vibprmpt.o vibprmpt.glo mv vibprmpt.tmp vibprmpt.o mv vibsbars.o vibsbars.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] mv vibsbars.o vibsbars.glo mv vibsbars.tmp vibsbars.o mv vibslate.o vibslate.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_Set3DColorMap': vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable] vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] mv vibslate.o vibslate.glo mv vibslate.tmp vibslate.o mv vibtexts.o vibtexts.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewDialogTextWithFont': vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialTextWithFont': vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value] mv vibtexts.o vibtexts.glo mv vibtexts.tmp vibtexts.o mv vibutils.o vibutils.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] mv vibutils.o vibutils.glo mv vibutils.tmp vibutils.o mv vibwndws.o vibwndws.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: At top level: vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function] mv vibwndws.o vibwndws.glo mv vibwndws.tmp vibwndws.o mv vibmain.o vibmain.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] mv vibmain.o vibmain.glo mv vibmain.tmp vibmain.o mv ncbidraw.o ncbidraw.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] mv ncbidraw.o ncbidraw.glo mv ncbidraw.tmp ncbidraw.o mv drawing.o drawing.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c mv drawing.o drawing.glo mv drawing.tmp drawing.o mv mapping.o mapping.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] mv mapping.o mapping.glo mv mapping.tmp mapping.o mv picture.o picture.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c mv picture.o picture.glo mv picture.tmp picture.o mv viewer.o viewer.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c mv viewer.o viewer.glo mv viewer.tmp viewer.o mv document.o document.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] mv document.o document.glo mv document.tmp document.o mv table.o table.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] mv table.o table.glo mv table.tmp table.o mv palette.o palette.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] mv palette.o palette.glo mv palette.tmp palette.o mv diagnost.o diagnost.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c mv diagnost.o diagnost.glo mv diagnost.tmp diagnost.o mv image.o image.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] mv image.o image.glo mv image.tmp image.o mv pictur3d.o pictur3d.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c mv pictur3d.o pictur3d.glo mv pictur3d.tmp pictur3d.o mv prim3d1.o prim3d1.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c mv prim3d1.o prim3d1.glo mv prim3d1.tmp prim3d1.o mv prim3d2.o prim3d2.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c mv prim3d2.o prim3d2.glo mv prim3d2.tmp prim3d2.o mv prim3d3.o prim3d3.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c mv prim3d3.o prim3d3.glo mv prim3d3.tmp prim3d3.o mv prim3d4.o prim3d4.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c mv prim3d4.o prim3d4.glo mv prim3d4.tmp prim3d4.o mv prim3d5.o prim3d5.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c mv prim3d5.o prim3d5.glo mv prim3d5.tmp prim3d5.o mv viewer3d.o viewer3d.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] mv viewer3d.o viewer3d.glo mv viewer3d.tmp viewer3d.o mv vibmouse.o vibmouse.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c mv vibmouse.o vibmouse.glo mv vibmouse.tmp vibmouse.o mv netscape.o netscape.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] mv netscape.o netscape.glo mv netscape.tmp netscape.o mv imagelst.o imagelst.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c mv imagelst.o imagelst.glo mv imagelst.tmp imagelst.o mv treeview.o treeview.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c mv treeview.o treeview.glo mv treeview.tmp treeview.o mv shim3d.o shim3d.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c shim3d.c: In function 'OGL_AddCylinder3D': shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable] shim3d.c: In function 'OGL_AddText3D': shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable] shim3d.c: In function 'OGL_Zoom_DragMA': shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable] shim3d.c: In function 'OGL_Hit': shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default] shim3d.c: In function 'write_row_callback': shim3d.c:2911:48: warning: 'end' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2911:48: warning: 'start' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'SetOGLFont': shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2322:28: warning: 'list' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3461:40: warning: 'pCz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:34: warning: 'pCy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:28: warning: 'pCx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:22: warning: 'pNz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:16: warning: 'pNy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3461:10: warning: 'pNx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3575:16: warning: 'Nx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3434:6: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] mv shim3d.o shim3d.glo mv shim3d.tmp shim3d.o mv odlbox.o odlbox.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] mv odlbox.o odlbox.glo mv odlbox.tmp odlbox.o rm -f libvibrantOGL.a ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo cp -p libvibrantOGL.a ../lib ranlib ../lib/libvibrantOGL.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accentr.c accentr.c: In function 'EntrezBiostrucGet': accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accutils.c rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawseq.c drawseq.c: In function 'AddFlatNodeSymbol': drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable] drawseq.c: In function 'AddAlignBlocks': drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'AddAlignFeature': drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable] drawseq.c: In function 'AddAlignmentMismatch': drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawRestrictionMap': drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable] drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawFeatures': drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawOneSeqLoc': drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable] drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'Label_GData': drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawEquivAlign': drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable] drawseq.c: In function 'load_align_label_rectangle': drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'PicForAlignNode': drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable] drawseq.c: At top level: drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function] drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotmatrx.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fea2seg.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fstyle.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg1.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg2.c smdlg2.c: In function 'Nlm_CreateDlgGroup': smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg3.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smtools.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF styleman.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stylemui.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF glbpic.c glbpic.c: In function 'label_linear_mark': glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable] glbpic.c: At top level: glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function] glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function] glbpic.c: In function 'get_circle_label_align': glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'label_circle_mark': glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2483:11: warning: 'first_left' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2473:10: warning: 'first_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'Draw_Global': glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wuninitialized] glbpic.c:1943:8: note: 'seglen' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF layout.c layout.c: In function 'LayoutNodeFlat': layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] layout.c: In function 'layout_uncompressed_group': layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutFeatNode': layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable] layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable] layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable] layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutAlignNode': layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable] layout.c: At top level: layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function] layout.c: In function 'layout_uncompressed_group': layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'GroupFeatNode': layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] layout.c:594:35: note: 'prev' was declared here layout.c: In function 'OrderCdsmRNA': layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wuninitialized] layout.c:940:15: note: 'm_missed' was declared here layout.c: In function 'LayoutFeatNode': layout.c:1447:7: warning: 'p_right' may be used uninitialized in this function [-Wuninitialized] layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wuninitialized] layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'LayoutAlignNode': layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2317:27: warning: 'cur_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saldist.c saldist.c: In function 'copy_string': saldist.c:1289:12: warning: value computed is not used [-Wunused-value] saldist.c:1302:11: warning: value computed is not used [-Wunused-value] saldist.c: In function 'nss_ref_complength': saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_pw_complength': saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_gp_complength': saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'SortbySimProc': saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable] saldist.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable] saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function] saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function] saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function] saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function] saldist.c: In function 'writematrixhalf.constprop.5': saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c: In function 'PwDistProc': saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c:1104:19: note: 'vnp' was declared here saldist.c: In function 'SortbyLenItem': saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wuninitialized] saldist.c:2172:28: note: 'mink' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saled.c saled.c: In function 'ReadAlignmentForSeqEntry': saled.c:3325:21: warning: unused variable 'dirty' [-Wunused-variable] saled.c:3321:21: warning: unused variable 'salp' [-Wunused-variable] saled.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salfiles.c salfiles.c: In function 'NewFastaRead': salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ReadAlignmentToStrings': salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable] salfiles.c: In function 'MacawRead': salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable] salfiles.c: In function 'ReadLocalAlign': salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ImportFromFile': salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable] salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable] salfiles.c: In function 'sesp_to_pept': salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable] salfiles.c: In function 'SaveFeatProc': salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'CCReadAnythingLoop': salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salfiles.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function] salfiles.c: In function 'CCDownloadProc': salfiles.c:2363:9: warning: 'new_sep' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'NewFastaRead.constprop.14': salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'GapFastaRead': salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wuninitialized] salfiles.c:654:16: note: 'seqstr' was declared here salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:660:16: note: 'startp' was declared here salfiles.c: In function 'ReadLocalAlignment': salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:1113:19: note: 'seqvnp' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpanel.c salpanel.c: In function 'go_to_next_to_draw': salpanel.c:331:17: warning: statement with no effect [-Wunused-value] salpanel.c: In function 'next_to_draw': salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salpanel.c: In function 'AssociatePropagatedSubloc': salpanel.c:3131:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'FeaturePropagateForm': salpanel.c:4670:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] salpanel.c:4665:15: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'OkToContinueWithFeatureApply': salpanel.c:6099:14: warning: unused variable 'num_missing' [-Wunused-variable] salpanel.c: In function 'DoApplyFeatureToAlignment': salpanel.c:6215:31: warning: unused variable 'found_null' [-Wunused-variable] salpanel.c: In function 'ApplyFeatureToAlignment': salpanel.c:6417:31: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salpanel.c:65:14: warning: 'diamondSym' defined but not used [-Wunused-variable] salpanel.c:68:14: warning: 'ovalSym' defined but not used [-Wunused-variable] salpanel.c:77:14: warning: 'upTriSym' defined but not used [-Wunused-variable] salpanel.c:80:14: warning: 'downTriSym' defined but not used [-Wunused-variable] salpanel.c:86:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable] salpanel.c:89:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable] salpanel.c:98:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable] salpanel.c:101:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable] salpanel.c:104:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable] salpanel.c:107:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable] salpanel.c:110:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:113:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:224:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function] salpanel.c:5055:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function] salpanel.c: In function 'draw_feat.isra.16.part.17': salpanel.c:2183:13: warning: 'col1' may be used uninitialized in this function [-Wuninitialized] salpanel.c: In function 'on_draw': salpanel.c:2599:31: warning: 'draw_diff' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salparam.c salparam.c: In function 'mergelst': salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] salparam.c: In function 'unmergelst': salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'FormulaDialog': salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable] salparam.c: In function 'JK_NTPattern2Ex': salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotBtn': salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotDialog': salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotItem': salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'SelectSeqFunc': salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'HighlightSelectionFunc': salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'PropagateFeatureProc': salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable] salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable] salparam.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salparam.c: In function 'FileInProc': salparam.c:782:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] salparam.c: In function 'DotPlotBtn': salparam.c:1950:25: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsa.c salsa.c: In function 'SelectSubsProc': salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SetSeqInfo': salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable] salsa.c: In function 'SetupAlignDataSap': salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable] salsa.c: In function 'get_bestpos_formerge': salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable] salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CreateSeqAlignViewForm': salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable] salsa.c: In function 'AlgEditFunc': salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable] salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable] salsa.c: In function 'OldAlignmentEditor': salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAnnotAlignEditor': salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditor': salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignViewer': salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop': salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop2': salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop3': salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop4': salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'InsertSeqProc': salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable] salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignBestHit': salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignStartUpdate': salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable] salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable] salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable] salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable] salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CCNormalizeSeqAlignId': salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable] salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable] salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable] salsa.c: In function 'ValidateSeqAlignandACCEx': salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] salsa.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function] salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function] salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function] salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function] salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function] salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function] salsa.c: In function 'ExportFASTAForUnselectedUpdates': salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'ExportBadAlignments': salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SeqAlignBestHit.isra.3': salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'BioseqEditMsgFunc': salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wuninitialized] salsa.c:890:20: note: 'anp' was declared here salsa.c: In function 'DeleteProc': salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SkipThisWindowProc': salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqfltr.c seqfltr.c: In function 'FilterSeq': seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgraph.c seqgraph.c: In function 'EndPointDialogToEndPointValNode': seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'SeqLocGraphViewProc': seqgraph.c:1136:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'MarkPrims': seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'CutOffProc': seqgraph.c:1018:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgrphx.c seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function] seqgrphx.c: In function 'FilterMsgFunc': seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmtrx.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpcc.c seqpcc.c: In function 'PCCProc': seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqanal.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aacomp.c aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqscrl.c seqscrl.c: In function 'SeqScrollDataFree': seqscrl.c:46:5: warning: value computed is not used [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valdlg.c valdlg.c: In function 'ClickRulesDoc': valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable] valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable] valdlg.c: In function 'UpdateRuleList': valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable] valdlg.c: In function 'SaveRuleChanges': valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable] valdlg.c: In function 'LaunchCommentRulesEditor': valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsm.c vsm.c: In function 'VSMAboutProc': vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrCreateMainWindow': vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrPopulateMain': vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMGatherPictProc': vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable] vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMAddPictureToEntity': vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmfile.c vsmfile.c: In function 'VSMGenericBinAsnOpen': vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMGenericFastaSave': vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMFastaProtSaveWithProduct': vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMSaveSetsAsFiles': vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmutil.c vsmutil.c: In function 'GetDocPosForError': vsmutil.c:1657:18: warning: variable 'val' set but not used [-Wunused-but-set-variable] vsmutil.c: At top level: vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function] vsmutil.c:1542:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function] vsmutil.c: In function 'ContinueProc': vsmutil.c:2157:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'SetVerbosityAndRepopulate': vsmutil.c:2198:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'RevalidateProc': vsmutil.c:2124:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'ClearValidateWindow': vsmutil.c:613:21: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'CreateValidateWindowExExEx': vsmutil.c:2521:23: warning: array subscript is above array bounds [-Warray-bounds] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvgraph.c udvgraph.c: In function 'UDV_click_item': udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable] udvgraph.c: In function 'UDV_SendBSPSelectMsg': udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_helixDNA': udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'draw_logo': udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_minus': udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_plus': udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_panel': udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable] udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable] udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable] udvgraph.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function] udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function] udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function] udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function] udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function] udvgraph.c: In function 'UDV_GetCurrentDispRange': udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_Draw_features': udvgraph.c:3203:23: warning: 'idx6' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3203:23: warning: 'idx5' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3196:11: warning: 'idx4' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:23: warning: 'idx3' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:23: warning: 'idx2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3182:12: warning: 'idx1' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_ClickProc': udvgraph.c:1458:21: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvopen.c udvopen.c: In function 'UDV_FileOpen': udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable] udvopen.c: In function 'UDV_CreateListBioseqDlg': udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress] udvopen.c: In function 'UDV_FOpenCancelProc': udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_analyze_SEP_for_open': udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_FOpenAcceptProc': udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvpanel.c udvpanel.c: In function 'UDV_GotoBtnProc': udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable] udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'CreateMainControls': udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'UDV_SearchFeatForKey': udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvpanel.c: At top level: udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function] udvpanel.c: In function 'InitFeaturesListDlg': udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotvibrant.c dotvibrant.c: In function 'DOT_DisplayHits': dotvibrant.c:564:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VscrlProc': dotvibrant.c:918:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HscrlProc': dotvibrant.c:972:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VCrossHairs': dotvibrant.c:1402:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_HCrossHairs': dotvibrant.c:1427:9: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_MoveCrossHairs': dotvibrant.c:1453:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c:1452:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawXAxis': dotvibrant.c:1532:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawYAxis': dotvibrant.c:1642:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c:1641:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVDisplayDiags': dotvibrant.c:1770:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1770:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1766:22: warning: variable 'width' set but not used [-Wunused-but-set-variable] dotvibrant.c:1765:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1765:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1762:28: warning: unused variable 'cutoff' [-Wunused-variable] dotvibrant.c:1760:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillNewSeqBufs': dotvibrant.c:2197:19: warning: unused variable 'alp' [-Wunused-variable] dotvibrant.c: In function 'DOT_InitCInfo': dotvibrant.c:2258:14: warning: unused variable 'colBuf' [-Wunused-variable] dotvibrant.c: In function 'DOT_SVDisplaySequence': dotvibrant.c:2379:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable] dotvibrant.c:2367:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable] dotvibrant.c:2364:14: warning: unused variable 'prot_threshold' [-Wunused-variable] dotvibrant.c:2350:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVClickProc': dotvibrant.c:2807:17: warning: unused variable 'handled' [-Wunused-variable] dotvibrant.c: In function 'DOT_ResizeFeatWindow': dotvibrant.c:3016:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3016:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3016:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeSequenceWindow': dotvibrant.c:3098:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable] dotvibrant.c:3098:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable] dotvibrant.c:3095:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HideFeatDlg': dotvibrant.c:3745:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVBuildDiagViewer': dotvibrant.c:4031:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable] dotvibrant.c:4029:28: warning: unused variable 'str2' [-Wunused-variable] dotvibrant.c:4029:13: warning: unused variable 'str1' [-Wunused-variable] dotvibrant.c:4022:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:4022:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_UpdateDataRects': dotvibrant.c:4166:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable] dotvibrant.c:4166:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_MsgFunc': dotvibrant.c:4215:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ReleaseProc': dotvibrant.c:4373:32: warning: unused variable 'yaxis_incr' [-Wunused-variable] dotvibrant.c:4373:15: warning: unused variable 'xaxis_incr' [-Wunused-variable] dotvibrant.c:4371:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable] dotvibrant.c:4370:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_StartDOTPLOT': dotvibrant.c:4891:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_DoZoom': dotvibrant.c:5106:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ZoomProc': dotvibrant.c:5204:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'AlnMgr2GetNextLine': dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value] dotvibrant.c: In function 'DOT_GetAlign': dotvibrant.c:5332:44: warning: variable 'n' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillAlignInfoPointer': dotvibrant.c:5565:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer': dotvibrant.c:5681:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c:5680:16: warning: unused variable 'numsaps' [-Wunused-variable] dotvibrant.c:5678:37: warning: unused variable 'sap_tmp' [-Wunused-variable] dotvibrant.c: In function 'DOT_DoBlast': dotvibrant.c:5918:23: warning: unused variable 'eval' [-Wunused-variable] dotvibrant.c:5917:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] dotvibrant.c:5915:23: warning: unused variable 'entityID' [-Wunused-variable] dotvibrant.c: In function 'DOT_CreateWindowDetails': dotvibrant.c:6214:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:6214:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c:6207:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeMainWindow': dotvibrant.c:6273:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FindAlignment': dotvibrant.c:6662:29: warning: unused variable 'rb_fixed' [-Wunused-variable] dotvibrant.c:6662:13: warning: unused variable 'lt_fixed' [-Wunused-variable] dotvibrant.c:6661:17: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs': dotvibrant.c:6792:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_OrganizeAlnsInSet': dotvibrant.c:6873:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable] dotvibrant.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotvibrant.c:2760:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function] dotvibrant.c:2954:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function] dotvibrant.c:3318:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function] dotvibrant.c:3688:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function] dotvibrant.c:4213:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function] dotvibrant.c:4749:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function] dotvibrant.c:4767:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function] dotvibrant.c:5281:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function] dotvibrant.c:5325:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function] dotvibrant.c:5894:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function] dotvibrant.c:6346:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function] dotvibrant.c:6642:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function] dotvibrant.c: In function 'DOT_GetNthSeqFromAlign': dotvibrant.c:5072:11: warning: 'spp' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer': dotvibrant.c:2611:32: warning: 'strand2' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2380:23: note: 'strand2' was declared here dotvibrant.c:2611:32: warning: 'strand1' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2380:14: note: 'strand1' was declared here dotvibrant.c:2583:37: warning: 'residue_names' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2378:16: note: 'residue_names' was declared here dotvibrant.c:2611:32: warning: 's_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:42: note: 's_pos' was declared here dotvibrant.c:2611:32: warning: 'q_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:35: note: 'q_pos' was declared here dotvibrant.c:2504:11: warning: 'hit_stop' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:25: note: 'hit_stop' was declared here dotvibrant.c:2614:32: warning: 'hit_start' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2370:14: note: 'hit_start' was declared here dotvibrant.c:2503:16: warning: 'buf_len' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:21: note: 'buf_len' was declared here dotvibrant.c:2545:18: warning: 'is_na' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2361:27: note: 'is_na' was declared here dotvibrant.c:2503:6: warning: 's' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2357:14: note: 's' was declared here dotvibrant.c:2626:16: warning: 'q' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2356:14: note: 'q' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil1.c dlgutil1.c: In function 'IsAuthList': dlgutil1.c:3008:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'TestAuthorDialog': dlgutil1.c:3357:20: warning: unused variable 'cp' [-Wunused-variable] dlgutil1.c: In function 'TestIntervalEditor': dlgutil1.c:5318:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable] dlgutil1.c:5317:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable] dlgutil1.c:5316:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'CreateStandardEditMenu': dlgutil1.c:9189:8: warning: variable 'i' set but not used [-Wunused-but-set-variable] dlgutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dlgutil1.c:8061:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function] dlgutil1.c:8378:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil2.c dlgutil2.c: In function 'CreateImportFields': dlgutil2.c:1401:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars': dlgutil2.c:3532:11: warning: variable 'y' set but not used [-Wunused-but-set-variable] dlgutil2.c:3532:8: warning: variable 'x' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetTableDisplayCell': dlgutil2.c:3931:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'NewCreateInferenceDialog': dlgutil2.c:7600:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'ClickableListOnKey': dlgutil2.c:10202:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetSelectedClickableListText': dlgutil2.c:10874:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'AutomatchFeatures': dlgutil2.c:13840:36: warning: variable 's3' set but not used [-Wunused-but-set-variable] dlgutil2.c: At top level: dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function] dlgutil2.c:8577:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function] dlgutil2.c:10039:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:10059:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:11993:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2trmlst.c e2trmlst.c: In function 'ReadAFew': e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2docsum.c e2docsum.c: In function 'FormatCdsSeq': e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'FetchSequence': e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable] e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SaveDocsumProject': e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'RetrieveGeneration': e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SetupMenus': e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable] e2docsum.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable] e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function] e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function] e2docsum.c: In function 'LaunchStructureViewer': e2docsum.c:2981:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] e2docsum.c: In function 'LaunchSequin': e2docsum.c:2838:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2graphic.c asn2graphic.c: In function 'ParseFilterItem': asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GeneProductsLayoutInternal': asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'ScaleSntDrawProc': asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GphSentProc': asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] asn2graphic.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2graphic.c: In function 'ProcessRows': asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF medview.c medview.c: In function 'PrintMedlineViewForm': medview.c:588:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bspview.c ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfview.c gbfview.c: In function 'RelModeFailText': gbfview.c:1004:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFlatFile': gbfview.c:1289:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFasta': gbfview.c:1714:33: warning: left-hand operand of comma expression has no effect [-Wunused-value] gbfview.c:1646:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateAsnOrXML': gbfview.c:1969:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable] gbfview.c:1968:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable] gbfview.c: At top level: gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function] gbfview.c:944:13: warning: 'LookForPubs' defined but not used [-Wunused-function] gbfview.c:1212:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function] gbfview.c:1231:13: warning: 'LookForFarProds' defined but not used [-Wunused-function] gbfview.c: In function 'ReleaseIcon': gbfview.c:667:28: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gbfview.c: In function 'PrintFlatFileFastaOrAsn': gbfview.c:2491:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphview.c gphview.c: In function 'ReleaseAlignment': gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DrawAlignOnAllSequences': gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable] gphview.c: In function 'ReleaseDesktop': gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable] gphview.c: In function 'AutoScrollGeneName': gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DisplayGeneChoiceWindow': gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable] gphview.c: In function 'PrintGraphical': gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable] gphview.c: In function 'PopulateAsn2GphGraphic': gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphdraw.c gphdraw.c: In function 'GraphSentProc': gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] gphdraw.c: In function 'DrawGraphToPanel': gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gxydraw.c gxydraw.c: In function 'DotXYPlot': gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wuninitialized] gxydraw.c:182:19: note: 'xaxiscount' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gtrdraw.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpanel.c seqpanel.c: In function 'FillFeatureInfo': seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeatureCodonLines': seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeature': seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'GetSeqChapterFeatureInfo': seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel': seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintFeature': seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable] seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintTranslatedFrame': seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ExportSequenceText': seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign] ../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr' seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable] seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqAlnOnDrag': seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable] seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ResizeSeqEdView': seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable] seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx': seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'WriteAlignmentContiguousToFile': seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:682:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'ReverseSequenceStrandsInAlignment': seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable] seqpanel.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function] seqpanel.c: In function 'SeqEdFindPatternDialog': seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'PrintFeature': seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:3810:21: note: 'str_prot' was declared here seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'SeqEdExportProc': seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:4233:17: note: 'seq_pos' was declared here seqpanel.c: In function 'onDrawSeqPanel': seqpanel.c:1252:29: warning: 'alnbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:33: note: 'alnbuf' was declared here seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:25: note: 'seqbuf' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingengraph.c ingengraph.c: In function 'Ing_BigEncodeIdxFeat': ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage': ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable] ingengraph.c: In function 'Ing_AddAlignsToOverviewPage': ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_DrawOverviewPage': ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable] ingengraph.c:488:14: warning: unused variable 'Nlm_Visible' [-Wunused-variable] ingengraph.c: In function 'Ing_PopOverviewPage': ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable] ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable] ingengraph.c: In function 'Ing_PopDetailedPage': ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_ExploreSegments': ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable] ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable] ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable] ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_AddGCRect': ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable] ingengraph.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function] ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function] ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenext.c ingenext.c: In function 'Ing_KeepTheBestAlignments': ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_HandleQBlastResults': ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_HandleResults': ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_AccepttRNAargsProc': ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable] ingenext.c: In function 'Ing_tRNAscanProc': ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable] ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable] ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable] ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable] ingenext.c: In function 'Ing_ReadtRNAConfigFile': ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_CreateDotMatrixForm': ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_RunSpidey': ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable] ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable] ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable] ingenext.c: In function 'Ing_ReadmRNAs_ext': ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_DeleteInsertInGenomic': ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable] ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable] ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable] ingenext.c: In function 'Ing_PrintSpideyReport': ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PrintBlastReport': ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable] ingenext.c:3850:18: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PopulateReport': ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable] ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable] ingenext.c: In function 'Ing_ResizeReportWindow': ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenext.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function] ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable] ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReportClickProc': ingenext.c:4287:21: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] ingenext.c:4262:22: note: 'nmismatches' was declared here ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c:3197:34: warning: 'mstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2681:13: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenwin.c ingenwin.c: In function 'Ing_PopulateDetailedPage': ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable] ingenwin.c: In function 'Ing_DoRange': ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateCpG': ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeCpGWindow': ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateMotif': ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable] ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeMotifWindow': ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable] ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ShowComplexity': ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] ingenwin.c: In function 'Ing_CreateNewFeature': ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable] ingenwin.c: In function 'Ing_GetAlignmentIntervals': ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldGetAlignmentIntervals': ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldMakeLocListFromSAP': ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable] ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable] ingenwin.c: In function 'Ing_OM_MsgFunc': ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress] ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable] ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable] ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable] ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable] ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable] ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable] ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable] ingenwin.c: In function 'Ing_MoveCursor': ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_FeatViewerClickProc': ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_SequenceClickProc': ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ReadInBlastAsn': ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable] ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable] ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable] ingenwin.c: In function 'Ing_ParseSeqIdFile': ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInFeatureTable': ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_AssembleGenscanInfo': ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInGenscan': ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable] ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable] ingenwin.c: In function 'Ing_AssembleTabDelimited': ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable] ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInTabDelimited': ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable] ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable] ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenMain': ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable] ingenwin.c: In function 'Ing_ResizeMainWindow': ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_OpenFromFileORNetwork': ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_EditFeature': ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_MarkSeqAnnot': ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable] ingenwin.c: In function 'Ing_CreateMismatchedDialog': ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain] ingenwin.c: In function 'Ing_PropagateClickProc': ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable] ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable] ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable] ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable] ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable] ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable] ingenwin.c: In function 'Ing_PrintCompProteins': ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable] ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable] ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable] ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_DoPropagate': ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable] ingenwin.c: In function 'Ing_GetFromNetwork': ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c: In function 'Ing_SetupMainWindow': ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable] ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable] ingenwin.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function] ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function] ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function] ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function] ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function] ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function] ingenwin.c: In function 'Ing_ReplaceMismatchedProc': ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:5137:17: note: 'j' was declared here ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3290:12: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:3255:17: note: 'strand' was declared here ingenwin.c: In function 'Ing_KozakProc': ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_SignalPeptideProc': ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_RepeatsProc': ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PolyAProc': ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_CpGProc': ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macrodlg.c macrodlg.c: In function 'CloseMacroEditorWindowProc': macrodlg.c:99:11: warning: unused variable 'do_remove' [-Wunused-variable] macrodlg.c: In function 'ExistingTextDialog': macrodlg.c:1908:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceQualChoiceDialog': macrodlg.c:3725:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable] macrodlg.c:3725:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3725:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3725:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceConstraintDialog': macrodlg.c:3963:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3963:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3963:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'CDSGeneProtQualConstraintDialog': macrodlg.c:4277:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:4277:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:4277:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'FeatureFieldTypeFromComplexConstraintType': macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_seqid' not handled in switch [-Wswitch] macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_string' not handled in switch [-Wswitch] macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_loc' not handled in switch [-Wswitch] macrodlg.c: In function 'TestApplyActionDialog': macrodlg.c:12680:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestEditActionDialog': macrodlg.c:12854:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestRemoveOutsideActionDialog': macrodlg.c:13012:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'AddMacroActions': macrodlg.c:19633:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'PointerToSampleDialog': macrodlg.c:19769:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SampleDialogCopy': macrodlg.c:19889:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable] macrodlg.c:19889:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SingleMacroAcceptButton': macrodlg.c:21177:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable] macrodlg.c:21177:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'LaunchMacroTemplateEditor': macrodlg.c:22877:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable] macrodlg.c: At top level: macrodlg.c:9778:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function] macrodlg.c: In function 'ApplyProductUpdateTableBtn': macrodlg.c:26278:15: warning: 'lip' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'RemoveSequencesActionDialog': macrodlg.c:6490:15: warning: 'p' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'ActionToSingleMacroActionForm': macrodlg.c:21387:6: warning: 'val' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'BuildEditMacroActionWindow': macrodlg.c:15004:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wuninitialized] macrodlg.c:14910:47: note: 'indexer_only_group' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF biosrc.c biosrc.c: In function 'CreateBioSourceDialog': biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable] biosrc.c: At top level: biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function] biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function] biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function] biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function] biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdrgn.c cdrgn.c: In function 'ProductToSeqLocPtr': cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CreateCodeBreakAlist': cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog': cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'PopulateAAPopup': cdrgn.c:7044:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: At top level: cdrgn.c:2174:13: warning: 'AccessionToGi' defined but not used [-Wunused-function] cdrgn.c:6253:14: warning: 'check_rna_type' defined but not used [-Wunused-function] cdrgn.c:6330:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function] cdrgn.c:6773:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function] cdrgn.c:6792:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function] cdrgn.c:6854:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF import.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pubdesc.c pubdesc.c: In function 'SetPubdescImportExportItems': pubdesc.c:2859:37: warning: comparison between pointer and integer [enabled by default] pubdesc.c: In function 'MakeReplaceAuthorsForm': pubdesc.c:4289:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable] pubdesc.c: In function 'DisplayDocSum': pubdesc.c:4851:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable] pubdesc.c: At top level: pubdesc.c:5363:13: warning: 'Quit' defined but not used [-Wunused-function] pubdesc.c:5099:14: warning: 'AddAll' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsub.c seqsub.c: In function 'SeqSubmitFromTemplateEditor': seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapgene.c mapgene.c: In function 'load_new_align': mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'figure_loc_by_position': mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'cvt_loc_for_single_gene': mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable] mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable] mapgene.c: In function 'print_header_for_center': mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'PrintGeneticMarkerForOneMap': mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: At top level: mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function] mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function] mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function] mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function] mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function] mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function] mapgene.c: In function 'PrintContigForOneMap': mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wuninitialized] mapgene.c:3152:7: note: 'yac_num' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtgene.c prtgene.c: In function 'print_store_for_html': prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable] rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvclick.c ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD': ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_SendBSPSelectMsg': ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_DragProc': ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: In function 'DDV_HoldProc': ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable] ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function] ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function] ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function] ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function] ddvclick.c: In function 'DDV_GetSeqNameGivenRow': ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] ddvclick.c: In function 'DDV_SendBSPSelectMsg.constprop.4': ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvgraph.c ddvgraph.c: In function 'DDV_DrawSequence': ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable] ddvgraph.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvopen.c ddvopen.c: In function 'DDV_GetAndCheckSeqAlign': ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_FOpenAcceptProc': ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_NetOpen_okProc': ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_ImportBioseqDlg': ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_HideDlg': ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function] ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function] ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvpanel.c ddvpanel.c: In function 'DDV_CreateViewerPanel': ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] ddvpanel.c: In function 'DDV_DispStyles_OkProc': ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable] ddvpanel.c: In function 'DDV_ExportTexte': ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable] ddvpanel.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function] ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function] ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function] ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function] ddvpanel.c: In function 'DDVExportTexteOkProc': ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wuninitialized] ddvpanel.c: In function 'DDV_SortPGPLineNum': ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF corematx.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dvncode.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb1.c objmmdb1.c: In function 'BiostrucAsnRead': objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdFree': objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdAsnRead': objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucSetAsnRead': objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucAnnotSetAsnRead': objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead': objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrFree': objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucHistoryAsnRead': objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucReplaceAsnRead': objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree': objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucSourceAsnRead': objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead': objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphAsnRead': objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrFree': objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphAsnRead': objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'MoleculeGraphAsnRead': objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'InterResidueBondAsnRead': objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueAsnRead': objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphPntrFree': objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'ResidueGraphPntrAsnRead': objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphPntrAsnRead': objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead': objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomAsnRead': objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'IntraResidueBondAsnRead': objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ChiralCenterAsnRead': objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrAsnRead': objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrSetAsnRead': objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: At top level: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb2.c objmmdb2.c: In function 'BiostrucModelAsnRead': objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrFree': objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ModelSpaceAsnRead': objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Coordinates_coordinatesFree': objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Coordinates_coordinatesAsnRead': objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ReferenceFrameAsnRead': objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'CoordinatesFree': objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicCoordinatesAsnRead': objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Surface_surfaceFree': objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Surface_surfaceAsnRead': objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'DensityCoordinatesAsnRead': objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelSpacePointsAsnRead': objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsFree': objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicOccupanciesAsnRead': objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AlternateConformationIdsAsnRead': objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ConformationEnsembleAsnRead': objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead': objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead': objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TMeshAsnRead': objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TrianglesAsnRead': objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:1761:10: note: 'choice' was declared here objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:828:10: note: 'choice' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb3.c objmmdb3.c: In function 'BiostrucFeatureSetAsnRead': objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphPntrsFree': objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AtomPntrsAsnRead': objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphAlignmentAsnRead': objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphInteractionAsnRead': objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'SphereAsnRead': objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ConeAsnRead': objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CylinderAsnRead': objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BrickAsnRead': objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransformAsnRead': objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureSetDescrFree': objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Location_locationFree': objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Property_propertyFree': objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ColorPropAsnRead': objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CameraAsnRead': objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptAsnRead': objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionSimilarityAsnRead': objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'OtherFeatureAsnRead': objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead': objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoleculePntrsAsnRead': objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead': objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueIntervalPntrAsnRead': objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionCoordinatesAsnRead': objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionBoundaryFree': objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AlignStatsAsnRead': objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RealValueAsnRead': objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ModelSpacePointAsnRead': objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoveFree': objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RotMatrixAsnRead': objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransMatrixAsnRead': objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'GLMatrixAsnRead': objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptStepAsnRead': objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb3.c: In function 'MoveAsnRead': objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionBoundaryAsnRead': objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead': objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'ChemGraphPntrsAsnRead': objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:3401:10: note: 'choice' was declared here objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:2303:10: note: 'choice' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcn3d.c objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead': objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead': objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dColorAsnRead': objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneStyleAsnRead': objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dGeneralStyleAsnRead': objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead': objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsAsnRead': objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead': objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dStyleTableItemAsnRead': objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dResidueRangeAsnRead': objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead': objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dObjectLocationAsnRead': objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationAsnRead': objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dGLMatrixAsnRead': objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dVectorAsnRead': objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dViewSettingsAsnRead': objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi.c mmdbapi.c: In function 'MakeAModelstruc': mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable] mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable] mmdbapi.c: In function 'AddPFBSelect': mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c mmdbapi1.c: In function 'FreeAtomicModelAsnLists': mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable] mmdbapi1.c: In function 'FetchBS': mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable] mmdbapi1.c: In function 'FreeSurfaceModelAsnList': mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'MakeChemGraphNodeList': mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoApplyTransform': mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoReverseTransform': mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable] mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'fnPBSFtoPSA': mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'InstallAlignedSlave': mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAddFeature': mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAsnGet': mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c mmdbapi2.c: In function 'GetAtomLocs': mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi2.c: In function 'AssignAtomLocId': mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignBackBone': mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignVirtual': mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignIons': mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'MolFromPDBChain': mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'SeqStringFromMol': mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c mmdbapi3.c: In function 'WritePDBHeader': mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi3.c: In function 'WritePDBRemarks': mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable] mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable] mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable] mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable] mmdbapi3.c: In function 'WritePDBConnect': mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WritePDBModelList': mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable] mmdbapi3.c: In function 'WriteFASTAMolecule': mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c mmdbapi4.c: In function 'RefreshSurface': mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable] mmdbapi4.c: In function 'FreeCoordinatesAsnLists': mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable] mmdbapi4.c: In function 'FreeRedundantAsn': mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable] mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c: In function 'RefreshModelAsnMem': mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable] mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable] mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable] mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable] mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable] mmdbapi4.c: In function 'RebuildChemGraphAsn': mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable] mmdbapi4.c: In function 'WriteASNChemGraphOnly': mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable] mmdbapi4.c: In function 'FreeSingleModel': mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable] mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable] mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable] mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable] mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable] mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wuninitialized] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbentr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vastsubs.c vastsubs.c: In function 'LoadSubsetTable': vastsubs.c:212:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:239:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:258:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:287:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:296:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:302:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prunebsc.c prunebsc.c: In function 'PruneFeatureSet': prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneModel': prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneBiostruc': prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:173:8: note: 'mtype' was declared here prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:171:47: note: 'currenthet' was declared here prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:102:8: note: 'mtype' was declared here prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:100:38: note: 'currentbp' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcdd.c objcdd.c: In function 'CddIdFree': objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddIdAsnRead': objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnRead': objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnWrite': objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddAsnRead': objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddSetAsnRead': objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddSetAsnWrite': objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeAsnRead': objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnRead': objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnWrite': objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnRead': objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnWrite': objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddProjectAsnRead': objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddOrgRefAsnRead': objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnRead': objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnWrite': objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrFree': objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddPrefNodeDescrAsnRead': objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnRead': objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite': objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'GlobalIdAsnRead': objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddRepeatAsnRead': objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddBookRefAsnRead': objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnRead': objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnWrite': objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'MatrixAsnRead': objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'TriangleAsnRead': objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentFree': objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentAsnRead': objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'UpdateAlignAsnRead': objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnRead': objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnWrite': objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'FeatureEvidenceFree': objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'FeatureEvidenceAsnRead': objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlignAnnotAsnRead': objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'AlignAnnotSetAsnRead': objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'AlignAnnotSetAsnWrite': objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'DomainParentAsnRead': objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SequenceTreeAsnRead': objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlgorithmTypeAsnRead': objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SeqTreeNodeAsnRead': objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'Children_footprintAsnRead': objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'NodeAnnotationAsnRead': objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerRectAsnRead': objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerAsnRead': objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddScriptAsnRead': objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objcdd.c: In function 'CddDescrAsnRead': objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddutil.c cddutil.c: In function 'CddGetPmIds': cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable] cddutil.c: In function 'CddGetAnnotNames': cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCheckForRepeats': cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress] cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg': cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable] cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'SeqAlignInform': cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddAlignInform': cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPssmInform': cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPosFreqInform': cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComputation': cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposComputation': cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddRetrieveBioseqById': cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable] cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable] cddutil.c: In function 'CddConsensus': cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposCompPart1': cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddGetNewIndexForThreading': cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable] cddutil.c: In function 'CddCposComp': cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDumpTaxLinks': cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable] cddutil.c: At top level: cddutil.c:6267:1: warning: "/*" within comment [-Wcomment] ../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable] ../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] cddutil.c: In function 'CddBioseqCopy': cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCopyMSLDenDiag': cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCalculateTriangle': cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wuninitialized] cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddposutil.c cddposutil.c: In function 'CddfindThreshSequences': cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddfindDenseDiagThreshSequences': cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddposFreqsToMatrix': cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] cddposutil.c: In function 'CddposDenseDiagDemographics': cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable] cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable] cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable] cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable] cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchInternalByLoc': cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable] cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable] cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable] cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable] cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable] cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable] cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable] cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable] cddposutil.c: In function 'CddposReadAlignment': cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable] cddposutil.c: At top level: ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function] cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function] cddposutil.c: In function 'CddposComputeSequenceWeights': cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:832:68: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddposDemographics': cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:1246:63: note: 'min_query_length' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmime.c objmime.c: In function 'NcbiMimeAsn1Free': objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataFree': objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataAsnRead': objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BiostrucAlignAsnRead': objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucAlignSeqAsnRead': objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqAsnRead': objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAsnRead': objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataFree': objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead': objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BundleSeqsAlignsAsnRead': objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:516:10: note: 'choice' was declared here objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:1719:10: note: 'choice' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF strucapi.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdalgs.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdatd.c thrdatd.c: In function 'atd': thrdatd.c:201:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable] thrdatd.c:198:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable] thrdatd.c:188:14: warning: unused variable 'm' [-Wunused-variable] thrdatd.c:188:12: warning: unused variable 'l' [-Wunused-variable] thrdatd.c:171:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable] thrdatd.c:170:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c thrdbwfi.c: In function 'bwfi': thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wuninitialized] thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpal.c thrdcpal.c: In function 'cpal': thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpll.c thrdcpll.c: In function 'cpll': thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type] thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcprl.c thrdcprl.c: In function 'cprl': thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcxei.c thrdcxei.c: In function 'cxei': thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable] thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrddgri.c thrddgri.c: In function 'g': thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsal0.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalu.c thrdsalu.c: In function 'salu': thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c thrdsgoi.c: In function 'sgoi': thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslo0.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslor.c thrdslor.c: In function 'slor': thrdslor.c:68:5: warning: 'mp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslou.c thrdslou.c: In function 'slou': thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspci.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspea.c thrdspea.c: In function 'spea': thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspel.c thrdspel.c: In function 'spel': thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspni.c thrdspni.c: In function 'spni': thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttb0.c thrdttb0.c: In function 'ttb0': thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttbi.c thrdttbi.c: In function 'ttbi': thrdttbi.c:124:3: warning: 'sm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdzsc.c thrdzsc.c: In function 'zsc': thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable] thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable] thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable] thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable] thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable] thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type] thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tls' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tlf' may be used uninitialized in this function [-Wuninitialized] rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF csim.c csim.c: In function 'set_pam_200': csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces] csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'set_pam_file': csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'big_pass': csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'diff1': csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:893:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'locate': csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1144:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'small_pass': csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'display': csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] csim.c: In function 'set_pam_file': csim.c:227:18: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] csim.c: In function 'SIM': csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wuninitialized] csim.c:928:23: note: 'dj' was declared here csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wuninitialized] csim.c:928:19: note: 'di' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF db_slist.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust.c dust.c: In function 'slpDust.isra.0': dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dust.c blast_dust.c: In function 's_SlpDust': blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF falign.c falign.c: In function 'fbld_table': falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bbld_table': falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rcbld_table': falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'ex_table': falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'free_all': falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'scan': falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'fscan': falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bscan': falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rfscan': falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'trcscan': falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rclocal': falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'enterS': falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'local': falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'align': falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'calign': falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'malign': falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF g_any.c g_any.c: In function 'k_align': g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: In function 'z_ALIGN': g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable] g_any.c: In function 'CHECK_SCORE': g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: At top level: g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable] g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable] g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim2.c sim2.c: In function 'SIM2': sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable] sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim3.c sim3.c: In function 'locate': sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c: At top level: sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function] sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function] sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function] sim3.c: In function 'locate': sim3.c:230:17: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim3.c:229:6: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim4.c sim4.c: In function 'sim4x': sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sim4.c: In function 'greedy': sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c: In function 'DISPLAY': sim4.c:2625:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sim4.c: At top level: sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function] sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function] sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim4.c: In function 'locate': sim4.c:2919:19: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim4.c:2918:7: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] sim4.c: In function 'sim4x': sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:18: note: 'forth' was declared here sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:12: note: 'back' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simutil.c simutil.c: In function 'make_align': simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable] simutil.c: At top level: simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function] simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function] simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function] simutil.c: In function 'sort_align_list': simutil.c:602:28: warning: 'score2' may be used uninitialized in this function [-Wuninitialized] simutil.c:602:28: warning: 'score1' may be used uninitialized in this function [-Wuninitialized] simutil.c: In function 'get_top_K_alignment': simutil.c:659:23: warning: 'score' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF slist.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sec.c sec.c: In function 'Region': sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:504:11: warning: 'old_l' may be used uninitialized in this function [-Wuninitialized] sec.c:494:13: warning: 'ppj' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'ppi' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'pi' may be used uninitialized in this function [-Wuninitialized] sec.c:513:13: warning: 'ej' may be used uninitialized in this function [-Wuninitialized] sec.c:400:8: warning: 'ei' may be used uninitialized in this function [-Wuninitialized] sec.c:511:13: warning: 'bj' may be used uninitialized in this function [-Wuninitialized] sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'RB' may be used uninitialized in this function [-Wuninitialized] sec.c:155:13: warning: 'LB' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tfuns.c tfuns.c: In function 'find_orf': tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable] tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable] tfuns.c: At top level: tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toasn3.c toasn3.c: In function 'FindOrg': toasn3.c:1311:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQualsWithComm': toasn3.c:1592:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQuals': toasn3.c:1629:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CountSourceFeat': toasn3.c:2415:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toasn3.c:2406:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'TASNTrimInternalSemicolons': toasn3.c:3986:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'ImpFeatToProtRef': toasn3.c:4672:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'RemovePeptideImpFeats': toasn3.c:4967:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] toasn3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] toasn3.c:1572:16: warning: 'GetQualValue' defined but not used [-Wunused-function] toasn3.c: In function 'GetOriginalBeforeAdjustment': toasn3.c:4185:29: warning: 'last' may be used uninitialized in this function [-Wuninitialized] toasn3.c: In function 'FixNucProtSet': toasn3.c:2058:21: warning: 'bseg' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toporg.c toporg.c: In function 'ChkSegset': toporg.c:62:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c:61:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toporg.c:58:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toporg.c:53:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'ChkNucProt': toporg.c:594:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBSfromParts': toporg.c:1280:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable] toporg.c:1279:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable] toporg.c:1278:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'MapsToGenref': toporg.c:1944:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable] toporg.c:1939:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable] toporg.c: In function 'FindOldLineage': toporg.c:2521:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBadTitleFromProteinProducts': toporg.c:4968:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable] toporg.c: At top level: toporg.c:3010:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function] toporg.c: In function 'MergeEquivCitSubs': toporg.c:3831:16: warning: 'csp1' may be used uninitialized in this function [-Wuninitialized] toporg.c: In function 'CheckMaps': toporg.c:1715:11: warning: 'to' may be used uninitialized in this function [-Wuninitialized] toporg.c:1696:24: note: 'to' was declared here toporg.c:1714:13: warning: 'from' may be used uninitialized in this function [-Wuninitialized] toporg.c:1696:18: note: 'from' was declared here toporg.c: In function 'ConvertSegSetToDeltaSeq': toporg.c:6566:29: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pobutil.c pobutil.c: In function 'build_repeat_feat': pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable] pobutil.c: In function 'merge_StdSeg': pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable] pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable] pobutil.c: In function 'AluFeat': pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2380:8: /usr/include/arm-linux-gnueabihf/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2381:8: /usr/include/arm-linux-gnueabihf/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stsutil.c stsutil.c: In function 'InitSTSSearch_r': stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable] stsutil.c: In function 'GetSTSEntry': stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable] stsutil.c: In function 'STSCalculateHash': stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'STSReverse': stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'InitHashTable': stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable] stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable] stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable] stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable] stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable] stsutil.c: At top level: stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggadj.c suggadj.c: In function 'score_possible_splice_sites': suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'check_split_codon': suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'overlapping_fixer': suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggest.c suggest.c: In function 'get_frames': suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c: At top level: suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function] suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggslp.c suggslp.c: In function 'MakeReverseSequence': suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast.c blast.c: In function 'BlastReevaluateWithAmbiguities': blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable] blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastGetVirtualOIDList': blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastGetDbChunk': blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastCreateQueryDNAP': blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordFinder_contig': blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordExtend': blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNewWordExtend': blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder_mh': blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder': blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastSaveCurrentHitlist': blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blast.c: In function 'SumHSPEvalue': blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable] blast.c: In function 'link_hsps': blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable] blast.c: In function 'blastMergeFilterLocs': blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wuninitialized] blast.c: In function 'BlastLinkHsps': blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastutl.c blastutl.c: In function 'BlastSeqLocFilterEx': blastutl.c:7554:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastPreliminaryGappedScore': blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blastutl.c: In function 'BlastGetGappedScore': blastutl.c:10282:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastNtFindWords': blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWordsEx': blastutl.c:12124:30: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWords_Old': blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastFindWords': blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11711:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback': blastutl.c:9008:42: warning: 'seqalign_array' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastool.c blastool.c: In function 'OOFBlastHSPGetNumIdentical': blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable] blastool.c: In function 'BlastCreateVirtualOIDList': blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastInsertList2Heap': blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastFreeHeap': blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BLASTFilterOverlapRegions': blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastPrintAlignInfo': blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'MegaBlastPrintAlignInfo': blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wuninitialized] blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastconcat.c blastconcat.c: In function 'BlastMakeFakeBspConcat': blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF splutil.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapxdrop.c gapxdrop.c: In function 'ALIGN_EX': gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg0.c bandalg0.c: In function 'g_band0_align': bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg0.c:266:12: warning: 'c' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg1.c bandalg1.c: In function 'gband_quadratic': bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg1.c: In function 'g_band1_align': bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg1.c: In function 'gband_quadratic': bandalg1.c:200:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg1.c:164:17: note: 'c' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg2.c bandalg2.c: In function 'gb_linear_align': bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable] bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable] bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable] bandalg2.c:326:9: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg3.c bandalg3.c: In function 'gband_linear_qgap': bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg3.c:292:21: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:28: note: 'Y' was declared here bandalg3.c:291:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:25: note: 'X' was declared here bandalg3.c:217:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:180:17: note: 'c' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg4.c bandalg4.c: In function 'g_band4_align_small': bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable] bandalg4.c: In function 'g_band4_align': bandalg4.c:286:13: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:544:3: warning: 'k' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:28: note: 'Y' was declared here bandalg4.c:823:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:25: note: 'X' was declared here bandalg4.c:694:10: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:634:17: note: 'c' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg5.c bandalg5.c: In function 'gband_q3gap': bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg5.c: In function 'g_band5_align': bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c: In function 'gband_q3gap': bandalg5.c:320:20: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:28: note: 'Y' was declared here bandalg5.c:319:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:25: note: 'X' was declared here bandalg5.c:180:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:140:17: note: 'c' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalgn.c bandalgn.c: In function 'ExtendSeqAlign': bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: In function 'CC_ExtendSeqAlign': bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: At top level: bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable] bandalgn.c: In function 'LocalBandToEditBlock': bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'SetLowUpFromBlast': bandalgn.c:1053:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1053:14: warning: 'maxsc' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'maxlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1048:10: warning: 'maxdi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'GetAlignExtremes': bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastkar.c blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable] blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable] blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable] blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable] blastkar.c: In function 'BLAST_ScoreBlkNew': blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF actutils.c actutils.c: In function 'SlideToHit': actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable] actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable] actutils.c: In function 'ResolveSpinConflict': actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable] actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable] actutils.c: In function 'ACT_FindBestAlnByDotPlot': actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] actutils.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function] actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function] actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function] actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function] actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function] actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function] actutils.c: In function 'GetOldBlastAlignmentPiece': actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit.c posit.c: In function 'posDemographics': posit.c:1110:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFreqsToMatrix': posit.c:1679:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] posit.c: In function 'posComputePseudoFreqs': posit.c:1840:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] posit.c: In function 'WposComputation': posit.c:1988:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posPrintInformation': posit.c:2319:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFindAlignmentDimensions': posit.c:3064:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3070:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3079:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3086:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posPreprocessAlignment': posit.c:3137:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3152:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posReadAlignment': posit.c:3253:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posFindAlignmentDimensions': posit.c:3087:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posComputeSequenceWeights': posit.c:1447:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] posit.c:1424:18: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posReadCheckpoint': posit.c:2873:28: warning: 'j' may be used uninitialized in this function [-Wuninitialized] posit.c:2702:11: note: 'j' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup.c lookup.c: In function 'lookup_get_memory': lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] lookup.c: In function 'MegaBlastBuildLookupTable': lookup.c:1047:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1051:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1078:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1082:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable] lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF readdb.c readdb.c: In function 'readdb_parse_db_names': readdb.c:2498:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] readdb.c: In function 'FindBlastDBFileEx': readdb.c:3475:33: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_new_internalEx': readdb.c:3553:25: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_get_link': readdb.c:4747:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable] readdb.c:4746:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable] readdb.c: In function 'readdb_check_oid': readdb.c:4891:18: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses] readdb.c: In function 'readdb_seqid2fasta': readdb.c:5231:22: warning: unused variable 'dummy_gi' [-Wunused-variable] readdb.c:5175:13: warning: unused variable 'chptr' [-Wunused-variable] readdb.c: In function 'FDBLoadMembershipsTable': readdb.c:8260:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable] readdb.c: In function 'SeqIdE2Index': readdb.c:8572:13: warning: unused variable 'tmp' [-Wunused-variable] readdb.c:8571:11: warning: unused variable 'tmptype' [-Wunused-variable] readdb.c: In function 'SeqIdSetE2Index': readdb.c:8876:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable] readdb.c: In function 'Fastacmd_Search_ex': readdb.c:12072:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable] readdb.c: In function 'DumpOneSequence': readdb.c:12409:14: warning: unused variable 'numeric_id' [-Wunused-variable] readdb.c: At top level: ../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable] ../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] readdb.c:12821:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function] readdb.c: In function 'readdb_get_taxonomy_names': readdb.c:5674:28: warning: 'ufp_last' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'readdb_get_descriptor': readdb.c:6663:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'GetAccList': readdb.c:11813:29: warning: 'AccListLast' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisam.c ncbisam.c: In function 'ISAMMakeStringIndex': ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable] ncbisam.c: In function 'ISAMInitSearch': ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable] ncbisam.c: In function 'ISAMMakeIndex': ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:983:14: warning: 'KeyInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c: In function 'ISAMCreateDatabase': ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wuninitialized] ncbisam.c: In function 'NISAMSearch': ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1750:19: warning: 'KeyPage' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1618:27: note: 'SampleNum' was declared here ncbisam.c: In function 'SISAMSearch': ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisort.c ncbisort.c: In function 'SORTFracCompare': ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int] ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int] ncbisort.c: At top level: ../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function] ncbisort.c: In function 'SORTMergeFPS': ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salign.c salign.c: In function 'BandAlignTwoSeqLocsFunc': salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable] salign.c: In function 'SortBlastHits': salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable] salign.c: In function 'link_solution': salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable] salign.c: In function 'SortBlastHits': salign.c:411:6: warning: 'salpdup' may be used uninitialized in this function [-Wuninitialized] salign.c:455:22: warning: 'salptmp' may be used uninitialized in this function [-Wuninitialized] salign.c:445:28: warning: 'preselect' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'TranslateSeqLoc.constprop.5': salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.3': salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wuninitialized] salign.c:1408:15: note: 'tail' was declared here salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:30: note: 'stop' was declared here salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:22: note: 'start1' was declared here salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:30: note: 'stop' was declared here salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:22: note: 'start1' was declared here salign.c: In function 'SeqLocListToSeqAlign': salign.c:1672:23: warning: 'master_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salptool.c salptool.c: In function 'MergeTwoDspBySIM4': salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable] salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable] salptool.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function] salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function] salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function] salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function] salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkutil.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkpcc.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkptpf.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkepi.c urkepi.c: In function 'PredictEpiI0': urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiComp': urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiHP': urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiProbFunc': urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'FilterEpi': urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:56: note: 'right' was declared here urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:50: note: 'left' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkfltr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkdust.c urkdust.c: In function 'DustMe_h': urkdust.c:196:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] urkdust.c: In function 'DustForGraph': urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urksigu.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seg.c seg.c: In function 'getprob': seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkbias.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function] urkcnsrt.c: In function 'Scan3Frames': urkcnsrt.c:1385:5: warning: 'length' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urktree.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pseed3.c pseed3.c: In function 'SeedPruneHitsFromSeedReturn': pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'seedEngineCore': pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pseed3.c: In function 'output_hits': pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'init_order': pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern1.c pattern1.c: In function 'init_pattern': pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c: In function 'find_hitsS_DNA': pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: At top level: pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type] pattern1.c: In function 'and': pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: In function 'align': pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] pattern1.c: In function 'get_patL': pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'align': pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wuninitialized] pattern1.c:1097:15: warning: 'tempCC' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'get_patLL': pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'init_pattern': pattern1.c:178:14: warning: 'tj' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'align_of_pattern': pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF impatool.c impatool.c: In function 'IMPALAPrintHelp': impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit2.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mbalign.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscrn.c vecscrn.c: In function 'VSPrintOverviewFromSeqLocs': vecscrn.c:1078:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] vecscrn.c: In function 'VSPrintListFromSeqLocs': vecscrn.c:1188:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mblast.c mblast.c: In function 'BioseqMegaBlastEngineCore': mblast.c:961:12: warning: statement with no effect [-Wunused-value] mblast.c:987:12: warning: statement with no effect [-Wunused-value] mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc': mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastWordFinder_disc_1b': mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastGappedAlign': mblast.c:2920:35: warning: 'gap_align' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder_disc': mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2117:51: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder': mblast.c:2711:51: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:17: note: 'ecode2' was declared here mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:9: note: 'ecode1' was declared here mblast.c: In function 'MegaBlastGapInfoToSeqAlign': mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF rpsutil.c rpsutil.c: In function 'RPSBlastSearchLight': rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable] rpsutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] rpsutil.c: In function 'getAuxInformation': rpsutil.c:398:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:404:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:405:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:406:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:407:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:408:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:409:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:410:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:415:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:416:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c: In function 'RPSAlignTraceBack': rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSCalcEValue': rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2238:13: warning: 'dbname' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF kappa.c kappa.c: In function 'Kappa_SequenceGetProteinRange': kappa.c:1399:7: warning: unused variable 'i' [-Wunused-variable] kappa.c: At top level: kappa.c:2203:5: warning: initialization from incompatible pointer type [enabled by default] kappa.c:2203:5: warning: (near initialization for 'redo_align_callbacks.get_range') [enabled by default] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF xmlblast.c xmlblast.c: In function 'PSIXmlInit': xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] xmlblast.c: In function 'BXMLGetSeqLineForStdSeg': xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'BXMLSeqAlignToHits': xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'SeqAlignToHits': xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bxmlobj.c bxmlobj.c: In function 'BlastOutputAsnRead': bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'ParametersAsnRead': bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'IterationAsnRead': bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'StatisticsAsnRead': bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'HitAsnRead': bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'HspAsnRead': bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotseq.c dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces] dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces] dotseq.c: In function 'DOT_BuildPLookup': dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable] dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable] dotseq.c: In function 'DOT_ComputeHits': dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable] dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable] dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot': dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] dotseq.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotseq.c: In function 'DOT_BuildHitList': dotseq.c:1286:9: warning: 'index' may be used uninitialized in this function [-Wuninitialized] dotseq.c:1310:19: note: 'index' was declared here dotseq.c:1309:19: warning: 'hitlist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF spidey.c spidey.c: In function 'SPI_PrintResult': spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AlnSinglemRNAToPieces': spidey.c:2850:4: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: In function 'SPI_FillInLastmRNAHoles': spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_FindBestAlnByDotPlot': spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_ConnectAlnPieces': spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable] spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AdjustSplicesInPieces': spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_CheckMrnaOrder': spidey.c:10293:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10297:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10310:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10312:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF motif.c motif.c: In function 'MOT_FindPolyA': motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: In function 'MOT_FindKozak': motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blfmtutl.c blfmtutl.c: In function 'BlastPrintTabularResults': blfmtutl.c:1113:13: warning: 'alignments_count' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1331:19: warning: 's_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1330:21: warning: 's_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1329:19: warning: 'q_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1328:21: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1072:20: warning: 'query_id' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c: In function 'BlastSetUserErrorString': blfmtutl.c:1431:13: warning: 'title' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_heap.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smith_waterman.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF redo_alignment.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontg.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontmb.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontt.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictogif.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontl.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfonts.c gcc -DWIN_GIF -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c ncbidrwg.c: In function 'Nlm_SetFontData': ncbidrwg.c:489:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontData': ncbidrwg.c:501:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_FindFont': ncbidrwg.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ReuseFont': ncbidrwg.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontSpec': ncbidrwg.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_AssignPrinterFont': ncbidrwg.c:2928:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GIFRgnToRect': ncbidrwg.c:4098:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_RectToGIFRgn': ncbidrwg.c:4109:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ClearRgn': ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_DiffRgn': ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_XorRgn': ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EqualRgn': ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EmptyRgn': ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_CopyPixmap': ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable] ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_GetColorRGB': ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wuninitialized] rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF algorend.c algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'RenderObject': algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable] algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderLabel': algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: In function 'Do3DOrigin': algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable] algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wuninitialized] algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc.isra.6': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'RenderObject': algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'Do3DOrigin': algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dsave.c cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DViewer': cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dentr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dshim.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a mv algorend.o algorend.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c algorend.c: In function 'Cn3D_SetOGLFont': algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable] algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable] algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable] algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable] algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable] algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'MasterChangeLabelsProc': algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable] algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable] algorend.c: In function 'ResetLabelCtrls': algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable] algorend.c: In function 'LabelControls': algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable] algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable] algorend.c: In function 'Cn3D_SetQualityFromAppParams': algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'OGL_Quality': algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable] algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable] algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderControls': algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderObject': algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable] algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable] algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable] algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable] algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable] algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable] algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable] algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'RenderLabel': algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable] algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable] algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable] algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] mv algorend.o algorend.glo mv algorend.tmp algorend.o mv cn3dmsel.o cn3dmsel.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c mv cn3dmsel.o cn3dmsel.glo mv cn3dmsel.tmp cn3dmsel.o mv cn3dopen.o cn3dopen.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here mv cn3dopen.o cn3dopen.glo mv cn3dopen.tmp cn3dopen.o mv cn3dsave.o cn3dsave.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c cn3dsave.c: In function 'Cn3D_AddMatrix': cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] mv cn3dsave.o cn3dsave.glo mv cn3dsave.tmp cn3dsave.o mv cn3dxprt.o cn3dxprt.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] mv cn3dxprt.o cn3dxprt.glo mv cn3dxprt.tmp cn3dxprt.o mv cn3dwin.o cn3dwin.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Cn3D_Default_HLColor': cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable] cn3dwin.c: In function 'Cn3D_RedrawEx': cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable] cn3dwin.c: In function 'fnPreCHLresidue': cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: In function 'Cn3DWin': cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable] cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function] cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function] cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function] cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] mv cn3dwin.o cn3dwin.glo mv cn3dwin.tmp cn3dwin.o mv cn3dentr.o cn3dentr.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c mv cn3dentr.o cn3dentr.glo mv cn3dentr.tmp cn3dentr.o mv cn3dmsg.o cn3dmsg.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmsg.o cn3dmsg.glo mv cn3dmsg.tmp cn3dmsg.o mv cn3dmatn.o cn3dmatn.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mv cn3dmatn.o cn3dmatn.glo mv cn3dmatn.tmp cn3dmatn.o mv cn3dmodl.o cn3dmodl.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmodl.o cn3dmodl.glo mv cn3dmodl.tmp cn3dmodl.o mv cn3dshim.o cn3dshim.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c cn3dshim.c: In function 'Cn3D_Size': cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] mv cn3dshim.o cn3dshim.glo mv cn3dshim.tmp cn3dshim.o mv cn3dmesh.o cn3dmesh.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mv cn3dmesh.o cn3dmesh.glo mv cn3dmesh.tmp cn3dmesh.o mv cn3dstyl.o cn3dstyl.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable] cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable] cn3dstyl.c: In function 'ModelSetLabelCtrls': cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable] cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] mv cn3dstyl.o cn3dstyl.glo mv cn3dstyl.tmp cn3dstyl.o mv seqcons.o seqcons.tmp gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] mv seqcons.o seqcons.glo mv seqcons.tmp seqcons.o rm -f libncbicn3dOGL.a ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo cp -p libncbicn3dOGL.a ../lib ranlib ../lib/libncbicn3dOGL.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_engine.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_extend.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_filter.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hits.c blast_hits.c: In function 'Blast_HSPResultsFromHSPStreamWithLimitEx': blast_hits.c:3499:13: warning: variable 'rm_hsps' set but not used [-Wunused-but-set-variable] blast_hits.c: At top level: blast_hits.c:3212:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_itree.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_lookup.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seg.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_sw.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_setup.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_stat.c blast_stat.c: In function 's_BlastGumbelBlkNew': blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable] blast_stat.c: At top level: blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] blast_stat.c: In function 'BLAST_SpougeEtoS': blast_stat.c:5205:12: warning: 'a' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_traceback.c blast_traceback.c: In function 'Blast_TracebackFromHSPList': blast_traceback.c:393:38: warning: 'qe' may be used uninitialized in this function [-Wuninitialized] blast_traceback.c:365:22: note: 'qe' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_util.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapinfo.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF greedy_align.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF link_hsps.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF na_ungapped.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_math.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_std.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_extend.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_lookup.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_util.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_encoding.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_kappa.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_parameters.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_posit.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_program.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_query_info.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tune.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aascan.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nascan.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF split_query.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF index_ungapped.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o cp -p libblast.a ../lib ranlib ../lib/libblast.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_api.c blast_api.c: In function 's_BlastRPSInfoInit': blast_api.c:149:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:151:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:152:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:153:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:154:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:155:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:156:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:157:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:161:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:162:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_input.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_format.c blast_format.c: In function 's_MBXmlInit': blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] blast_format.c: In function 's_LoadMatrix': blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options_api.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_prelim.c blast_prelim.c: In function 'Blast_PrelimSearchThreadRun': blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_returns.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seq.c blast_seq.c: In function 's_SeqLocFillSequenceBuffer': blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped': blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tabular.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF repeats_filter.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c seqsrc_readdb.c: In function 's_ReaddbGetNextChunk': seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF twoseq_api.c twoseq_api.c: In function 's_TwoSeqBasicFillOptions': twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable] twoseq_api.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust_filter.c dust_filter.c: In function 's_GetFilteringLocations': dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message_api.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c hspfilter_queue.c: In function 's_BlastHSPQueueInit': hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable] rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a gcc -o asntool -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm asncode.c: In function 'AsnCode_SETOF_base_or_user': asncode.c:1518:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable] asncode.c:1517:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'userobj_and_basetype_SETOF': asncode.c:2472:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIsReallyChoice': asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart': asncode.c:3623:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIter': asncode.c:4237:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCode': asncode.c:4316:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable] asncode.c: At top level: asncode.c:286:17: warning: 'defptr' defined but not used [-Wunused-variable] asncode.c:288:17: warning: 'defbigint' defined but not used [-Wunused-variable] asncode.c:289:17: warning: 'defreal' defined but not used [-Wunused-variable] asncode.c:290:17: warning: 'defbool' defined but not used [-Wunused-variable] asncode.c:291:17: warning: 'defbyte' defined but not used [-Wunused-variable] cp -p asntool ../bin make[2]: Leaving directory `/«PKGBUILDDIR»/build' /usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" VIBLIBS= VIBFLAG= LIB50=-lpcre make[2]: Entering directory `/«PKGBUILDDIR»/build' ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. make[2]: [copy] Error 1 (ignored) chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -o testcore -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib testcore.c -lncbi -lm testcore.c: In function 'TestMemory': testcore.c:235:5: warning: statement with no effect [-Wunused-value] testcore.c: At top level: testcore.c:337:13: warning: 'TestStrings' defined but not used [-Wunused-function] gcc -o makeset -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib makeset.c -lncbi In file included from makeset.c:9:0: ../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default] ../include/all.h:5745:0: note: this is the location of the previous definition makeset.c: In function 'Nlm_Main': makeset.c:27:26: warning: unused variable 'uid' [-Wunused-variable] makeset.c:27:16: warning: unused variable 'tempseek' [-Wunused-variable] makeset.c:27:7: warning: unused variable 'seekptr' [-Wunused-variable] gcc -o getmesh -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib getmesh.c -lncbi gcc -o indexpub -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib indexpub.c -lncbi gcc -o getpub -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib getpub.c -lncbi gcc -o testobj -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib testobj.c -lncbiobj -lncbi -lm gcc -o seqtest -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib seqtest.c -lncbiobj -lncbi -lm gcc -o dosimple -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib dosimple.c -lncbiobj -lncbi -lm gcc -o asn2ff -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib asn2ff.c -lncbiobj -lncbi asn2ff.c: In function 'Nlm_Main': asn2ff.c:129:10: warning: unused variable 'good' [-Wunused-variable] asn2ff.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff.c: In function 'Nlm_Main': asn2ff.c:405:13: warning: 'atp2' may be used uninitialized in this function [-Wuninitialized] asn2ff.c:352:9: warning: 'atp1' may be used uninitialized in this function [-Wuninitialized] gcc -o checksub -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib checksub.c -lncbiobj -lncbi gcc -o asndhuff -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib asndhuff.c -lncbicdr -lncbiobj -lncbi asndhuff.c: In function 'do_medline': asndhuff.c:182:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] asndhuff.c: In function 'do_sequence': asndhuff.c:221:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] asndhuff.c:200:10: warning: unused variable 'val' [-Wunused-variable] gcc -o entrcmd -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm entrcmd.c: In function 'PrintDSPMwww': entrcmd.c:373:21: warning: unused variable 'lsp' [-Wunused-variable] entrcmd.c: In function 'PrintDSPNwww': entrcmd.c:465:21: warning: unused variable 'lsp' [-Wunused-variable] entrcmd.c: In function 'PrintDSPPwww': entrcmd.c:569:21: warning: unused variable 'lsp' [-Wunused-variable] entrcmd.c: In function 'TermProcessing': entrcmd.c:1297:13: warning: variable 'inclusive' set but not used [-Wunused-but-set-variable] entrcmd.c:1296:13: warning: variable 'endWithTerm' set but not used [-Wunused-but-set-variable] entrcmd.c:1295:13: warning: variable 'beginWithTerm' set but not used [-Wunused-but-set-variable] entrcmd.c: At top level: entrcmd.c:284:16: warning: 'IsGenBank' defined but not used [-Wunused-function] entrcmd.c: In function 'LinkSetToLocalLinkSet': entrcmd.c:212:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized] entrcmd.c: In function 'TermProcessing': entrcmd.c:1387:43: warning: 'ratio' may be used uninitialized in this function [-Wuninitialized] entrcmd.c: In function 'Nlm_Main': entrcmd.c:1548:17: warning: 'db' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1476:13: note: 'db' was declared here entrcmd.c:1602:31: warning: 'vector' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1582:13: note: 'vector' was declared here entrcmd.c:2207:24: warning: 'neighborFile' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1447:32: warning: 'taxString' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1917:13: note: 'taxString' was declared here entrcmd.c:2231:23: warning: 'termString' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:2137:12: warning: 'boolString' may be used uninitialized in this function [-Wuninitialized] gcc -o errhdr -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib errhdr.c -lncbi In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from errhdr.c:1: In function 'strncat', inlined from 'main' at errhdr.c:44:11: /usr/include/arm-linux-gnueabihf/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -o cdscan -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm cdscan.c:133:13: warning: 'root' defined but not used [-Wunused-variable] cdscan.c:392:13: warning: 'GenBankPubs' defined but not used [-Wunused-function] cdscan.c:576:13: warning: 'SeqEntryToFeat' defined but not used [-Wunused-function] gcc -o findspl -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib findspl.c -lncbiacc -lncbiobj -lncbi gcc -o ncbisort -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib sortcmd.c -lncbitool -lblastcompadj \ -lncbi -lm gcc -o fa2htgs -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib fa2htgs.c -lncbiobj -lncbi fa2htgs.c: In function 'Nlm_Main': fa2htgs.c:474:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] fa2htgs.c:448:16: note: 'dsp' was declared here gcc -o fastacmd -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib fastacmd.c -lncbitool -lncbi gcc -o formatdb -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib formatdb.c -lncbitool -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o formatrpsdb -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib formatrpsdb.c -lncbitool \ -lblast -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] formatrpsdb.c: In function 'RPSUpdateStatistics': formatrpsdb.c:440:43: warning: 'j' may be used uninitialized in this function [-Wuninitialized] formatrpsdb.c: In function 'RPSUpdatePSSM': formatrpsdb.c:575:27: warning: 'j' may be used uninitialized in this function [-Wuninitialized] gcc -o blastall -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib blastall.c -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi blastall.c: In function 'Main_old': blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized] blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -o blastpgp -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib blastpgp.c -lncbitool \ -lncbiobj -lncbi blastpgp.c: In function 'PGPFormatFooter': blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable] blastpgp.c: In function 'Nlm_Main': blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable] blastpgp.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o testval -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib testval.c -lncbiobj -lncbi -lm testval.c: In function 'Nlm_Main': testval.c:188:9: warning: 'atp2' may be used uninitialized in this function [-Wuninitialized] testval.c:183:9: warning: 'atp' may be used uninitialized in this function [-Wuninitialized] gcc -o seedtop -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib seedtop.c -lncbitool \ -lncbiobj -lncbi seedtop.c: In function 'Nlm_Main': seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -o makemat -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib makemat.c -lncbitool \ -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] makemat.c: In function 'convertToMatrices': makemat.c:277:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c:279:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c:290:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c:292:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c: In function 'makeMatrixName': makemat.c:97:15: warning: 'lastc' may be used uninitialized in this function [-Wuninitialized] makemat.c: In function 'Nlm_Main': makemat.c:437:27: warning: 'sbp' may be used uninitialized in this function [-Wuninitialized] makemat.c:244:23: note: 'sbp' was declared here makemat.c:416:24: warning: 'relativeMatrixFileName' may be used uninitialized in this function [-Wuninitialized] makemat.c:230:29: note: 'relativeMatrixFileName' was declared here makemat.c:281:19: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized] makemat.c:232:10: note: 'prefixLength' was declared here gcc -o copymat -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib copymat.c -lblast -lncbitool \ -lncbi copymat.c: In function 'RPSCreateLookupFile': copymat.c:622:10: warning: variable 'start' set but not used [-Wunused-but-set-variable] copymat.c: In function 'findTotalLength': copymat.c:429:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:430:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:431:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:432:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:433:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:434:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:435:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:436:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:439:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:440:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c: In function 'readAllMatrices': copymat.c:383:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:385:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c: In function 'readNextMatrix': copymat.c:299:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:301:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:305:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:306:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:307:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:309:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:310:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:311:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:312:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:314:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:315:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:316:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:317:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:319:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] copymat.c: In function 'Nlm_Main': copymat.c:387:19: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized] copymat.c:371:10: note: 'prefixLength' was declared here gcc -o impala -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib profiles.c -lncbitool \ -lncbiobj -lncbi -lm profiles.c: In function 'Nlm_Main': profiles.c:1430:16: warning: variable 'spp' set but not used [-Wunused-but-set-variable] profiles.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] profiles.c: In function 'findProfileParams': profiles.c:461:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:462:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:463:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:464:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:465:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:466:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:467:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:468:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:471:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:472:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'findMatchingProfiles': profiles.c:1104:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:1106:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:1117:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:1119:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'computeL': profiles.c:379:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:380:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:381:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:382:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:383:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:397:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:398:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:399:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:412:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:414:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'readkbp': profiles.c:267:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:273:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:276:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:277:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:278:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:279:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:281:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:282:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:283:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:284:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'readSequence': profiles.c:204:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] profiles.c:206:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:235:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] profiles.c:237:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'readSequence.isra.5': profiles.c:252:25: warning: 'query' may be used uninitialized in this function [-Wuninitialized] profiles.c: In function 'findMatchingProfiles': profiles.c:1164:32: warning: 'scaledInitialUngappedLambda' may be used uninitialized in this function [-Wuninitialized] profiles.c:1164:32: warning: 'correctUngappedLambda' may be used uninitialized in this function [-Wuninitialized] profiles.c:1161:19: warning: 'LambdaRatio' may be used uninitialized in this function [-Wuninitialized] profiles.c:1108:13: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized] profiles.c: In function 'Nlm_Main': profiles.c:1769:16: warning: 'txmatrix' may be used uninitialized in this function [-Wuninitialized] profiles.c:1767:11: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized] profiles.c:1775:11: warning: 'search' may be used uninitialized in this function [-Wuninitialized] profiles.c:1761:21: warning: 'options' may be used uninitialized in this function [-Wuninitialized] profiles.c:1779:25: warning: 'fake_bsp' may be used uninitialized in this function [-Wuninitialized] profiles.c:1746:14: warning: 'prune' may be used uninitialized in this function [-Wuninitialized] gcc -o megablast -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib megablast.c -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi megablast.c: In function 'BLAST_FillOptions': megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable] megablast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o vecscreen -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib vecscreen.c -lncbitool \ -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o gil2bin -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib gil2bin.c -lncbitool -lncbi gcc -o blastclust -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib blastclust.c -lncbitool \ -lncbiobj -lncbi blastclust.c: In function 'Nlm_Main': blastclust.c:1067:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blastclust.c:1278:25: warning: variable 'head' set but not used [-Wunused-but-set-variable] blastclust.c:961:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable] blastclust.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastclust.c: In function 'PrintNeighbors': blastclust.c:785:39: warning: 'context' may be used uninitialized in this function [-Wuninitialized] blastclust.c:779:35: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastclust.c:668:31: warning: 'hsp_info_array' may be used uninitialized in this function [-Wuninitialized] blastclust.c:763:15: warning: 'hsp' may be used uninitialized in this function [-Wuninitialized] blastclust.c: In function 'Nlm_Main': blastclust.c:968:28: warning: 'progressfp' may be used uninitialized in this function [-Wuninitialized] gcc -o rpsblast -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib rpsblast.c -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi rpsblast.c: In function 'Nlm_Main': rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable] rpsblast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o asn2xml -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib asn2xml.c -lncbiobj -lncbi gcc -o debruijn -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib debruijn.c -lblast -lncbi debruijn.c: In function 'Nlm_Main': debruijn.c:72:12: warning: pointer targets in assignment differ in signedness [-Wpointer-sign] debruijn.c:80:3: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness [-Wpointer-sign] /usr/include/string.h:399:15: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *' debruijn.c:89:10: warning: pointer targets in assignment differ in signedness [-Wpointer-sign] debruijn.c:106:3: warning: pointer targets in passing argument 1 of 'puts' differ in signedness [-Wpointer-sign] /usr/include/stdio.h:688:12: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *' debruijn.c:109:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -o asn2idx -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib asn2idx.c -lncbiobj -lncbi gcc -o sortbyquote -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib sortbyquote.c -lncbi gcc -o subfuse -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib subfuse.c -lncbiobj -lncbi gcc -o test_regexp -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib pcretest.c -lpcre gcc -o demo_regexp -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib pcredemo.c -lpcre gcc -o demo_regexp_grep -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib pcregrep.c -lpcre make[2]: Leaving directory `/«PKGBUILDDIR»/build' cd build && rm -f blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust /usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" VIBLIBS= VIBFLAG= THREAD_OBJ="ncbithr.o" \ THREAD_OTHERLIBS="-lpthread" blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust make[2]: Entering directory `/«PKGBUILDDIR»/build' ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. make[2]: [copy] Error 1 (ignored) chmod -R ug+rw,o+r . gcc -o blast -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib blast_driver.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread gcc -o blastall -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib blastall.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread blastall.c: In function 'Main_old': blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized] blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -o blastall_old -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DBLASTALL_TOOLS_ONLY blastall.c \ ncbithr.o -lncbitool -lncbiobj -lncbi -lpthread blastall.c: In function 'Main_old': blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastall.c:2931:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized] blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -o blastpgp -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib blastpgp.c ncbithr.o -lncbitool \ -lncbiobj -lncbi -lpthread blastpgp.c: In function 'PGPFormatFooter': blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable] blastpgp.c: In function 'Nlm_Main': blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable] blastpgp.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o seedtop -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib seedtop.c ncbithr.o -lncbitool \ -lncbiobj -lncbi -lpthread seedtop.c: In function 'Nlm_Main': seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -o megablast -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib megablast.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread megablast.c: In function 'BLAST_FillOptions': megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable] megablast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o rpsblast -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib rpsblast.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread rpsblast.c: In function 'Nlm_Main': rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable] rpsblast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o blastclust -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib blastclust.c ncbithr.o -lncbitool \ -lncbiobj -lncbi -lpthread blastclust.c: In function 'Nlm_Main': blastclust.c:1067:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blastclust.c:1278:25: warning: variable 'head' set but not used [-Wunused-but-set-variable] blastclust.c:961:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable] blastclust.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastclust.c: In function 'PrintNeighbors': blastclust.c:785:39: warning: 'context' may be used uninitialized in this function [-Wuninitialized] blastclust.c:779:35: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastclust.c:668:31: warning: 'hsp_info_array' may be used uninitialized in this function [-Wuninitialized] blastclust.c:763:15: warning: 'hsp' may be used uninitialized in this function [-Wuninitialized] blastclust.c: In function 'Nlm_Main': blastclust.c:968:28: warning: 'progressfp' may be used uninitialized in this function [-Wuninitialized] make[2]: Leaving directory `/«PKGBUILDDIR»/build' /usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" THREAD_OBJ="ncbithr.o" \ THREAD_OTHERLIBS="-lpthread" \ NETENTREZVERSION="2.02c2ASN1SPEC6" BLIB31=libvibnet.a \ OGLLIBS= VIBLIBS= VIB="Psequin sbtedit udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl Cn3D" make[2]: Entering directory `/«PKGBUILDDIR»/build' ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c ni_service.c: In function 's_GenericGetService': ni_service.c:199:19: warning: unused variable 'c' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c netentr.c: In function 's_NetEntTLEvalCount': netentr.c:798:5: warning: "/*" within comment [-Wcomment] netentr.c: In function 's_NetDocSumListGet': netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable] netentr.c: In function 's_NetTermListByTerm': netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable] netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 's_NetTermListByPage': netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 'NetEntTLEval': netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized] netentr.c: In function 'NetEntTLEvalCount': netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wuninitialized] netentr.c:782:16: note: 'atp' was declared here netentr.c: In function 'NetTermListByTerm': netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wuninitialized] netentr.c:1210:9: note: 'next_page' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c netlib.c: In function 'BoolExprAsnWrite': netlib.c:307:16: warning: unused variable 'n' [-Wunused-variable] netlib.c: At top level: netlib.c:96:16: warning: 'loaded' defined but not used [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c objneten.c: In function 'EntrezNeighborTextAsnRead': objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'ChildLinkAsnRead': objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezHierarchyAsnRead': objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezBlastreqAsnRead': objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'EntrezExtraInfoAsnRead': objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterArticlesAsnRead': objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterRespAsnRead': objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateConstraintsAsnRead': objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateVectorAsnRead': objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetByFidAsnRead': objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetFeatIdsAsnRead': objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable] rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Naccentr.c: In function 'EntrezDocSumListGet': Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Caccentr.c: In function 'EntrezDocSumListGet': Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c trmlst.c: In function 'FetchFromTermList': trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c docsum.c: In function 'ImportDocSumForm': docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable] docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable] docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable] docsum.c: In function 'SaveDocsumProject': docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] docsum.c: At top level: docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable] docsum.c: In function 'LaunchStructureViewer': docsum.c:4192:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] docsum.c: In function 'FetchLocalBioseq': docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wuninitialized] rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c objtax1.c: In function 'Taxon1ReqFree': objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1InfoAsnRead': objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1ErrorAsnRead': objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1NameAsnRead': objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1DataAsnRead': objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon2DataAsnRead': objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax1.c: In function 'Taxon1RespAsnRead': objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c taxutil.c: In function 'taxname_match': taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable] taxutil.c: In function 'get_lineage': taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] taxutil.c: In function 'get_gcode': taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c tc2proc.c: In function 'getIdByOrgRef': tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable] tc2proc.c: In function 'bldLineage': tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable] tc2proc.c: In function 'storedTaxId': tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable] tc2proc.c: In function 'tax1e_needUpdate': tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable] tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable] tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable] tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable] tc2proc.c: At top level: tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function] tc2proc.c: In function 'mergeOrgMod': tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c parttree.c: In function 'tax_ptree_addSubtree': parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c taxblast.c: In function 'TXBHtmlReportInternal': taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable] taxblast.c: At top level: taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function] taxblast.c: In function 'RDTaxLookupReset': taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type] taxblast.c: In function 'TXBGetTargetGi': taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c id1gen.c: In function 'ID1serverRequestFree': id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverMaxcomplexAsnRead': id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqHistAsnRead': id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqEntryInfoAsnRead': id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1blobInfoAsnRead': id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverDebugAsnRead': id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverBackAsnRead': id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c id1arch.c: In function 'ID1ArchSeqEntryGet': id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'ID1ArchGIGet': id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'SeqHistPrintTable': id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c accid1.c: In function 's_ID1BioseqFetchFunc': accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable] rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c objblst3.c: In function 'BlastSearchAsnRead': objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastRequestFree': objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff2_cutoff2Free': objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'Cutoff2_cutoff2AsnRead': objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffAsnRead': objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffFree': objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastMatrixAsnRead': objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoAsnRead': objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastMaskAsnRead': objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastKABlkAsnRead': objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastErrorAsnRead': objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPhialignAsnRead': objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoGetAsnRead': objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSeqIdAsnRead': objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSequenceAsnRead': objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPartsAsnRead': objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastQueuedAsnRead': objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastProgressAsnRead': objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastDeflineAsnRead': objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastVersionAsnRead': objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastHitAsnRead': objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastResultsAsnRead': objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastResponseAsnRead': objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1421:10: note: 'choice' was declared here objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1787:10: note: 'choice' was declared here gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c netblap3.c: In function 'BlastNetBioseqFetchFunc': netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] netblap3.c: In function 'MegaBlastSeqLocNetCore': netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] netblap3.c: At top level: ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function] netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function] netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function] netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function] netblap3.c: In function 'BlastNetMatrixToBlastMatrix': netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wuninitialized] netblap3.c: In function 'SubmitRequest': netblap3.c:1763:18: warning: 'bllist' may be used uninitialized in this function [-Wuninitialized] netblap3.c:1698:19: note: 'bllist' was declared here netblap3.c: In function 'TraditionalBlastReportEngine': netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] netblap3.c:2576:21: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c objmla.c: In function 'MlaRequestFree': objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgAsnRead': objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgListAsnRead': objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla.c: In function 'MlaBackAsnRead': objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function] medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function] medarch.c: In function 'MedArchPubSetCreate': medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1697:5: warning: 'pubSetAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a gcc -o Psequin -I. -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \ -lvibnet -lncbidesk -lblastapi -lnetblast -lncbitool -lncbimla \ -lvibrant -lncbiobj -lncbi sequin1.c: In function 'SQACT_GuessWhatIAm': sequin1.c:4927:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin1.c: In function 'FinishAlignmentRead': sequin1.c:5239:16: warning: variable 'rsult' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'DeleteSelectedFeatureOrDescriptor': sequin1.c:8904:19: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable] sequin1.c:8903:19: warning: variable 'itemID' set but not used [-Wunused-but-set-variable] sequin1.c:8901:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'WizardTrackerFree': sequin1.c:15642:20: warning: variable 'sep_next' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'AddCodingRegionFromWizard': sequin1.c:15711:33: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'SetWizardTrackerBaseSrcQuals': sequin1.c:15990:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] sequin1.c:16037:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'SetWizardTrackerExtraSrcQuals': sequin1.c:16136:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] sequin1.c:16161:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'AddWizardFeatureCallback': sequin1.c:16488:3: warning: enumeration value 'eVirusFeat_None' not handled in switch [-Wswitch] sequin1.c:16488:3: warning: enumeration value 'eVirusFeat_CDS' not handled in switch [-Wswitch] sequin1.c: In function 'HaveUniqueCombinationOfQuals': sequin1.c:17141:15: warning: variable 'num_quals' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'VirusQualsOk': sequin1.c:20709:5: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'CulturedSamplesOk': sequin1.c:20814:5: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'CheckFeatureQualsUniqueness': sequin1.c:22415:8: warning: variable 'num_rows' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'WizardFeatureQualsOk': sequin1.c:22506:11: warning: variable 'num_features' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'TabTableToMultiModTabTable': sequin1.c:22874:16: warning: unused variable 'bsp' [-Wunused-variable] sequin1.c: In function 'MultiModTableToTabTable': sequin1.c:22953:21: warning: variable 'fq' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'ShowAllFeatureQualSequences': sequin1.c:23510:15: warning: variable 'show_all' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'TabTableLineFromFeature': sequin1.c:24456:14: warning: unused variable 'vals' [-Wunused-variable] sequin1.c: In function 'PregenerateFeatures': sequin1.c:24506:22: warning: unused variable 'problems' [-Wunused-variable] sequin1.c: In function 'CollectWizardSetType': sequin1.c:25697:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch] sequin1.c:25697:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch] sequin1.c: In function 'SequencingMethodToDialog': sequin1.c:26179:27: warning: variable 'info' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'CollectWizardSourceType': sequin1.c:26622:5: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch] sequin1.c:26622:5: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch] sequin1.c:26622:5: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch] sequin1.c: In function 'HaveWizardSourceType': sequin1.c:26655:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch] sequin1.c:26655:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch] sequin1.c:26655:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch] sequin1.c:26655:3: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch] sequin1.c: In function 'WizardSourceTypeForm': sequin1.c:26717:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch] sequin1.c:26717:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch] sequin1.c:26717:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch] sequin1.c:26717:3: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch] sequin1.c: In function 'PopulateAAPopup': sequin1.c:27745:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'CountAmbiProc': sequin1.c:29126:11: warning: unused variable 'normal' [-Wunused-variable] sequin1.c: In function 'SetFastaText': sequin1.c:29946:15: warning: unused variable 'intro' [-Wunused-variable] sequin1.c: In function 'WizardFASTAFwd': sequin1.c:30287:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch] sequin1.c:30287:3: warning: enumeration value 'eWizardType_Viruses' not handled in switch [-Wswitch] sequin1.c:30287:3: warning: enumeration value 'eWizardType_CulturedSamples' not handled in switch [-Wswitch] sequin1.c:30287:3: warning: enumeration value 'eWizardType_IGS' not handled in switch [-Wswitch] sequin1.c:30287:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch] sequin1.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] sequin1.c:381:13: warning: 'SetSequinAppParamTF' defined but not used [-Wunused-function] sequin1.c:630:13: warning: 'ReplaceString' defined but not used [-Wunused-function] sequin1.c:2288:13: warning: 'StyleManagerProc' defined but not used [-Wunused-function] sequin1.c:7084:16: warning: 'LookupJournalFuncNew' defined but not used [-Wunused-function] sequin1.c:7668:13: warning: 'FindAlu' defined but not used [-Wunused-function] sequin1.c:7894:13: warning: 'DefaultMessageProc' defined but not used [-Wunused-function] sequin1.c:7907:13: warning: 'PreferencesProc' defined but not used [-Wunused-function] sequin1.c:9051:13: warning: 'TermSelectionFormMessage' defined but not used [-Wunused-function] sequin1.c:9071:13: warning: 'DocumentSummaryFormMessage' defined but not used [-Wunused-function] sequin1.c:10824:13: warning: 'ObjMgrReport' defined but not used [-Wunused-function] sequin1.c:17187:16: warning: 'DoAllSequencesHaveAnExtraQual' defined but not used [-Wunused-function] sequin1.c:17257:13: warning: 'SeqEntryToModTabTable' defined but not used [-Wunused-function] sequin1.c:17292:13: warning: 'ModTableToSeqEntryList' defined but not used [-Wunused-function] sequin1.c:17324:13: warning: 'ClearModifierValues' defined but not used [-Wunused-function] sequin1.c:18852:16: warning: 'RNAAnnotationWindow' defined but not used [-Wunused-function] sequin1.c:26802:16: warning: 'WizardCommentForm' defined but not used [-Wunused-function] sequin1.c:18084:16: warning: 'JumpToMainSubmission' defined but not used [-Wunused-function] sequin1.c:18185:13: warning: 'GroupChoiceFromName' defined but not used [-Wunused-function] sequin1.c:18659:16: warning: 'MultOrganelleFeat' defined but not used [-Wunused-function] sequin1.c:23478:16: warning: 'EqualIgnoreWhiteSpacePunctAndCaps' defined but not used [-Wunused-function] sequin1.c:24580:16: warning: 'GetLocStart' defined but not used [-Wunused-function] sequin1.c:24593:16: warning: 'GetLocStop' defined but not used [-Wunused-function] sequin1.c:24606:13: warning: 'ApplyLocStart' defined but not used [-Wunused-function] sequin1.c:24622:13: warning: 'ApplyLocStop' defined but not used [-Wunused-function] sequin1.c:24729:16: warning: 'IsAllATGC' defined but not used [-Wunused-function] sequin1.c:25266:13: warning: 'SaveVirusFeatureTableChoice' defined but not used [-Wunused-function] sequin1.c:25864:16: warning: 'WizardStructuredCommentForm' defined but not used [-Wunused-function] sequin1.c: In function 'LaunchedGoogleEarth': sequin1.c:1522:18: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sequin1.c: In function 'Entrez2QueryProc': sequin1.c:9725:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sequin1.c: In function 'TabTableToSeqAnnotList': sequin1.c:23167:62: warning: 'i' may be used uninitialized in this function [-Wuninitialized] sequin1.c: In function 'SubtoolDoneFuncEx': sequin1.c:2018:31: warning: 'bfp' may be used uninitialized in this function [-Wuninitialized] sequin1.c: In function 'BioseqViewFormMenus': sequin1.c:8507:23: warning: 'mssgupd_idx' may be used uninitialized in this function [-Wuninitialized] sequin2.c: In function 'ValidateModifierTableSequenceIDs': sequin2.c:2845:16: warning: variable 'deleted_rows' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ImportFastaDialog': sequin2.c:4568:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ExportOneRawSequence': sequin2.c:4830:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ExportOneDeltaBioseq': sequin2.c:4929:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'FindBioseqWithValue': sequin2.c:7883:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'CollectNucleotideProteinAssociations': sequin2.c:9250:73: warning: variable 'p_msg' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'GetModNameStartFromEqLoc': sequin2.c:11839:11: warning: variable 'match_quote' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'GetValueFromTitle': sequin2.c:12403:15: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'PrepareSourceAssistantTableData': sequin2.c:13654:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'SetOrganismText': sequin2.c:13856:30: warning: variable 'changed_val' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ApplyRowListToIDAndTitleEdit': sequin2.c:15507:32: warning: variable 'next_org' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'EditOrgModColumn': sequin2.c:16418:26: warning: variable 'row_list' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ApplyOrgModColumn': sequin2.c:17267:11: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'PrepareSequenceAssistantTableData': sequin2.c:18241:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'UpdateIdAndTitleEditDialog': sequin2.c:19658:50: warning: variable 'has_space' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'SetIDAndTitleEditDialogErrorColumn': sequin2.c:19808:74: warning: variable 'has_space' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'GetDiffDlgCoord': sequin2.c:20978:19: warning: variable 'start_col' set but not used [-Wunused-but-set-variable] sequin2.c:20978:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'DownloadAndDisplay': sequin2.c:26788:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'DownloadProc': sequin2.c:26956:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'LoadSecondaryAccessionNumbersPlusHistFromFile': sequin2.c:28210:17: warning: variable 'need_seqid' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'RemoveEmptyGenomeProjectIDCallback': sequin2.c:28350:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin2.c:3920:1: warning: 'ReadOneSegSet' defined but not used [-Wunused-function] sequin2.c:8182:20: warning: 'FindSeqEntryWithTranscriptID' defined but not used [-Wunused-function] sequin2.c:10754:17: warning: 'GetSeqIdFromSeqEntryPtr' defined but not used [-Wunused-function] sequin2.c:24973:1: warning: 'SequenceAssistantValidateSegments' defined but not used [-Wunused-function] sequin2.c:26384:13: warning: 'GetRawBsps' defined but not used [-Wunused-function] sequin2.c: In function 'SeqEntryPtrToOrgDoc': sequin2.c:13143:26: warning: 'row_status' may be used uninitialized in this function [-Wuninitialized] sequin2.c:13033:14: note: 'row_status' was declared here sequin2.c: In function 'InsertMostUsedFeatureValNodes': sequin2.c:28480:22: warning: 'new_item' may be used uninitialized in this function [-Wuninitialized] sequin3.c: In function 'FarToNearProc': sequin3.c:941:12: warning: variable 'olddelta' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'FixLocus': sequin3.c:1404:15: warning: variable 'embl_code' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'RemoveGeneXrefsOnBioseqs': sequin3.c:2667:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'MakeCDS': sequin3.c:6938:27: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'ConvertOneCDSToMiscFeat': sequin3.c:9351:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin3.c: In function 'SuppressGenesOnFeatures': sequin3.c:11193:20: warning: variable 'b' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'CheckForExistingMolInfo': sequin3.c:12866:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'UniqueAndCountValNodeCS': sequin3.c:13830:17: warning: variable 'curr' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'RemoveNthCDS': sequin3.c:21998:17: warning: variable 'segCount' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'InstantiateGapFeatCallback': sequin3.c:23218:15: warning: variable 'fuzz' set but not used [-Wunused-but-set-variable] sequin3.c: At top level: ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin3.c:2382:13: warning: 'JustTaxonFixup' defined but not used [-Wunused-function] sequin3.c:2548:13: warning: 'NewRemoveDuplicateFeatsGenes' defined but not used [-Wunused-function] sequin3.c:4349:13: warning: 'CorrectAlignmentsAfterNToGapConversion' defined but not used [-Wunused-function] sequin3.c:4381:13: warning: 'RawSeqToDeltaSeq' defined but not used [-Wunused-function] sequin3.c:4395:13: warning: 'RawSeqToDeltaSeqUnknownLengthGaps' defined but not used [-Wunused-function] sequin3.c:4412:13: warning: 'RawSeqToDeltaSeqUnknown100LengthGaps' defined but not used [-Wunused-function] sequin3.c:6006:13: warning: 'EnableFeatureToGeneControlsPopup' defined but not used [-Wunused-function] sequin3.c:6014:13: warning: 'EnableFeatureToGeneControlsText' defined but not used [-Wunused-function] sequin3.c:8121:13: warning: 'MultiTransformProc' defined but not used [-Wunused-function] sequin3.c:12594:13: warning: 'NewMolInfoFieldsApply' defined but not used [-Wunused-function] sequin3.c:12650:13: warning: 'RibosomalRNAToGenomicDNAMenuItem' defined but not used [-Wunused-function] sequin3.c:14618:13: warning: 'PrepareTaxListProc' defined but not used [-Wunused-function] sequin3.c:17573:13: warning: 'DoGeneReset' defined but not used [-Wunused-function] sequin3.c:18047:1: warning: 'TruncProtsAtStopsExEx' defined but not used [-Wunused-function] sequin3.c:23365:13: warning: 'AddAllDbxrefsMenuItem' defined but not used [-Wunused-function] sequin3.c:23410:13: warning: 'NewAligmentViewer' defined but not used [-Wunused-function] sequin3.c:23543:13: warning: 'TestTax3A' defined but not used [-Wunused-function] sequin3.c:23549:13: warning: 'TestTax3B' defined but not used [-Wunused-function] sequin3.c:23908:13: warning: 'ModernizePCRs' defined but not used [-Wunused-function] sequin3.c:23935:13: warning: 'ModernizeRNAs' defined but not used [-Wunused-function] sequin3.c:23962:13: warning: 'ModernizeGenes' defined but not used [-Wunused-function] sequin3.c:24389:13: warning: 'WriteAccessionsCallback' defined but not used [-Wunused-function] sequin3.c:24720:13: warning: 'TestSegregateByList' defined but not used [-Wunused-function] sequin4.c: In function 'SplitSegmentedFeatsOnOneSet': sequin4.c:1692:20: warning: variable 'set_sep' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'RemoveOneSegSet': sequin4.c:2363:30: warning: variable 'seg_bssp' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'NewUpdateSeqAlign': sequin4.c:3418:20: warning: variable 'bssp' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'ImportAlignmentForSeqHistInterval': sequin4.c:3613:21: warning: unused variable 'bssp' [-Wunused-variable] sequin4.c:3600:21: warning: unused variable 'salp' [-Wunused-variable] sequin4.c: In function 'GenerateSeqAlignFromSeqEntryMasterOption': sequin4.c:5300:21: warning: unused variable 'bsp' [-Wunused-variable] sequin4.c: In function 'LaunchOrfViewer': sequin4.c:7681:9: warning: variable 'qu' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'MRnaFromCdsCallback': sequin4.c:8579:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'FindNonACGT': sequin4.c:10240:21: warning: variable 'len' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'ConsolidateOrganismNotesProc': sequin4.c:11481:21: warning: variable 'note_mod' set but not used [-Wunused-but-set-variable] sequin4.c:11480:21: warning: variable 'note_ssp' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'GetPubStatus': sequin4.c:13310:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable] sequin4.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin4.c:16360:25: warning: 'FeatToDeltaSeq' defined but not used [-Wunused-function] sequin4.c:3513:18: warning: 'FindBioseqForSeqHist' defined but not used [-Wunused-function] sequin4.c:7172:13: warning: 'AddOrfListToDoc' defined but not used [-Wunused-function] sequin4.c:12398:13: warning: 'PubConstraintClearText' defined but not used [-Wunused-function] sequin4.c:16818:13: warning: 'CleanupTruncateByProtAlignForm' defined but not used [-Wunused-function] sequin4.c: In function 'ExplodeGroup.isra.99': sequin4.c:5933:28: warning: 'nucbsp' may be used uninitialized in this function [-Wuninitialized] sequin4.c: In function 'GroupExplodeFunc': sequin4.c:6012:18: warning: 'lastEsp' may be used uninitialized in this function [-Wuninitialized] sequin4.c: In function 'SplitSegmentedFeats': sequin4.c:1700:27: warning: 'new_frame' may be used uninitialized in this function [-Wuninitialized] sequin5.c: In function 'GeneExtendFunc': sequin5.c:262:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RemoveGBIDsProc': sequin5.c:1562:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RemoveGBProtIDsProc': sequin5.c:1612:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RemoveGIProc': sequin5.c:1663:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'SetmRNAFieldString': sequin5.c:6823:17: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetCDSGeneProtField': sequin5.c:7508:11: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetRNAFieldString': sequin5.c:7903:21: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable] sequin5.c:7897:14: warning: variable 'rrp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'SetRNAFieldString': sequin5.c:8138:17: warning: variable 'rrp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'BioseqConstrainedFeaturesCallback': sequin5.c:11568:21: warning: variable 'cop' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'SampleDialogCopy': sequin5.c:13820:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable] sequin5.c:13820:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'TestFeatureFieldChoice': sequin5.c:14341:31: warning: variable 'dlg' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CreateClickableListForSourceFeats': sequin5.c:15126:27: warning: variable 'insertion_seq_txt' set but not used [-Wunused-but-set-variable] sequin5.c:15126:11: warning: variable 'transposon_txt' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CDSToMiscFeatConvertFunc': sequin5.c:15286:24: warning: variable 'rval' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetRegionOpts': sequin5.c:15424:25: warning: unused variable 'rval' [-Wunused-variable] sequin5.c: In function 'NewConvertFeaturesByList': sequin5.c:15594:14: warning: unused variable 'only_pseudo' [-Wunused-variable] sequin5.c: In function 'FeatureRemoveOrConvertAction': sequin5.c:15860:25: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CDSGeneProtAECRDialog': sequin5.c:18829:25: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CDSGeneProtConvert': sequin5.c:19196:18: warning: unused variable 'str_dst' [-Wunused-variable] sequin5.c: In function 'CDSGeneProtParse': sequin5.c:19406:18: warning: variable 'avd' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RNAQualListDialog': sequin5.c:21868:22: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetRNAFeatureList': sequin5.c:22057:14: warning: variable 'matches' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RNAQualConvertSwapParseList': sequin5.c:22189:26: warning: variable 'avd' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RNAQualEditRemoveList': sequin5.c:22285:20: warning: unused variable 'rval' [-Wunused-variable] sequin5.c: In function 'GetGBQualSampleName': sequin5.c:22998:14: warning: variable 'num_feature_choices' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'ConvertGeneLocusTagToOldLocusTagCallback': sequin5.c:23233:28: warning: variable 'mp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetCombinedCDSLocationCallback': sequin5.c:23550:21: warning: unused variable 'fcontext' [-Wunused-variable] sequin5.c: In function 'NewSegregateBioseqSet': sequin5.c:26583:22: warning: variable 'p' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CompareBulkRows': sequin5.c:28054:8: warning: variable 'col' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'ResortBulkEditorRows': sequin5.c:28321:20: warning: unused variable 'matches' [-Wunused-variable] sequin5.c:28318:26: warning: unused variable 'last_inserted' [-Wunused-variable] sequin5.c: In function 'UpdateBulkEdDisplay': sequin5.c:29402:17: warning: unused variable 'text_len' [-Wunused-variable] sequin5.c: In function 'AddColumnToRowList': sequin5.c:30137:11: warning: unused variable 'm' [-Wunused-variable] sequin5.c: In function 'ApplyBulkEditCommon': sequin5.c:30562:23: warning: unused variable 'need_redraw' [-Wunused-variable] sequin5.c: In function 'CopyAllFieldsFromList': sequin5.c:30917:8: warning: unused variable 'num_full' [-Wunused-variable] sequin5.c: In function 'BulkEditorObjectList': sequin5.c:32879:22: warning: unused variable 'subtype' [-Wunused-variable] sequin5.c: In function 'BulkEditor': sequin5.c:32937:22: warning: variable 'field_list' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetSpecificHostCorrectionCategory': sequin5.c:33691:22: warning: unused variable 'fmt' [-Wunused-variable] sequin5.c: At top level: ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin5.c:13071:25: warning: 'ParseFieldSrcFree' defined but not used [-Wunused-function] sequin5.c:21552:23: warning: 'AECRRNAQualFree' defined but not used [-Wunused-function] sequin5.c:27713:13: warning: 'FreeBulkEditorValuesList' defined but not used [-Wunused-function] sequin5.c:28245:13: warning: 'FlatCopyRows' defined but not used [-Wunused-function] sequin5.c:28749:28: warning: 'OneFieldBulkEditNew' defined but not used [-Wunused-function] sequin5.c:29002:28: warning: 'TwoFieldBulkEditNew' defined but not used [-Wunused-function] sequin5.c:31224:15: warning: 'BulkNucLocationDialog' defined but not used [-Wunused-function] sequin5.c:31390:16: warning: 'BulkReleaseTrueFalse' defined but not used [-Wunused-function] sequin5.c:31401:13: warning: 'BulkSetPseudo' defined but not used [-Wunused-function] sequin5.c:31412:16: warning: 'BulkGetPseudo' defined but not used [-Wunused-function] sequin5.c:31877:23: warning: 'GetBulkEditorFieldListForFeature' defined but not used [-Wunused-function] sequin5.c:32179:16: warning: 'BulkSrcGetOrgModDescTF' defined but not used [-Wunused-function] sequin5.c:32200:13: warning: 'BulkSrcSetOrgModDescTF' defined but not used [-Wunused-function] sequin5.c: In function 'ResortBulkEditorRows': sequin5.c:28395:55: warning: 'smallest_pos' may be used uninitialized in this function [-Wuninitialized] sequin5.c: In function 'ConvertDescriptorFieldCallback': sequin5.c:6059:18: warning: 'dst_text' may be used uninitialized in this function [-Wuninitialized] sequin5.c: In function 'ApplyEditConvertRemoveCombo.constprop.182': sequin5.c:17922:18: warning: 'm' may be used uninitialized in this function [-Wuninitialized] sequin6.c: In function 'CleanupDeleteByTextConvertForm': sequin6.c:1489:19: warning: variable 'cfp' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'RemoveOrgModText': sequin6.c:3680:35: warning: variable 'next_mod' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'GapLocationsFromNs': sequin6.c:5229:15: warning: variable 'seq_ext' set but not used [-Wunused-but-set-variable] sequin6.c:5228:15: warning: variable 'len' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'RemoveTerminalNsFromLocation': sequin6.c:5772:21: warning: unused variable 'seq_offset' [-Wunused-variable] sequin6.c: In function 'ApplyBioFeatToList': sequin6.c:6890:23: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'CopyContactToAuthors': sequin6.c:8820:16: warning: unused variable 'list' [-Wunused-variable] sequin6.c: In function 'AddCommentsToList': sequin6.c:14010:22: warning: unused variable 'comment_len' [-Wunused-variable] sequin6.c: In function 'RNAWordsFromString': sequin6.c:14124:32: warning: variable 'last_pos' set but not used [-Wunused-but-set-variable] sequin6.c:14124:15: warning: variable 'last_hit' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'FeatureEditorActionGroup': sequin6.c:15192:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'DoPartialFeatureProc': sequin6.c:15455:16: warning: variable 'dash_at_end' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'FeatureEditorDoOneAction': sequin6.c:16047:19: warning: unused variable 'act' [-Wunused-variable] sequin6.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin6.c:85:8: warning: 'publication_field_alist' defined but not used [-Wunused-variable] sequin6.c:123:8: warning: 'cds_short_field_alist' defined but not used [-Wunused-variable] sequin6.c:154:8: warning: 'rnax_short_field_alist' defined but not used [-Wunused-variable] sequin6.c:225:13: warning: 'PopulateParseQualPopup' defined but not used [-Wunused-function] sequin6.c:650:16: warning: 'TrimOffEndQuotes' defined but not used [-Wunused-function] sequin6.c:7713:13: warning: 'SetContactNameFromString' defined but not used [-Wunused-function] sequin6.c:15251:13: warning: 'DoPseudoFeatureProc' defined but not used [-Wunused-function] sequin6.c: In function 'CreateFieldSubfieldDlg.constprop.86': sequin6.c:575:16: warning: 'g2' may be used uninitialized in this function [-Wuninitialized] sequin7.c: In function 'GeneExtendFunc': sequin7.c:959:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'FinishConvertingToCDS': sequin7.c:2767:17: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'SetBestFrame': sequin7.c:5529:26: warning: variable 'seq_str2' set but not used [-Wunused-but-set-variable] sequin7.c:5529:16: warning: variable 'seq_str1' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'FixFeatureIntervalSeqLoc': sequin7.c:7054:17: warning: variable 'tmpsip' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'RNABlastOptionNew': sequin7.c:7592:17: warning: variable 'rval' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'GetSubListForRNAStrandCorrection': sequin7.c:7872:27: warning: variable 'found_id' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'ShowClickableItemListEx': sequin7.c:10117:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'ChooseFeaturesForConversion': sequin7.c:10258:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'GetTableOptions': sequin7.c:14437:30: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'RemoveCDSandmRNAForGene': sequin7.c:14720:27: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'CombineToCreatePseudoGene': sequin7.c:14803:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin7.c: In function 'TrimTaxFix': sequin7.c:16288:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin7.c: In function 'FindBestNTrimSites': sequin7.c:17131:21: warning: unused variable 'trim_list' [-Wunused-variable] sequin7.c: In function 'BarcodeBlastOptionNew': sequin7.c:17374:17: warning: variable 'rval' set but not used [-Wunused-but-set-variable] sequin7.c: At top level: sequin7.c:47:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin7.c:5092:13: warning: 'RemoveMultipleTitles' defined but not used [-Wunused-function] sequin7.c:7176:16: warning: 'DoesBioseqMatchStringConstraint' defined but not used [-Wunused-function] sequin7.c:12852:13: warning: 'RemoveBarcodeKeywordsFromLowTrace' defined but not used [-Wunused-function] sequin7.c:14966:13: warning: 'FindBadLatLonSourceFeat' defined but not used [-Wunused-function] sequin7.c:16481:25: warning: 'NTrimIntervalFree' defined but not used [-Wunused-function] sequin7.c: In function 'GetSubListForRNAStrandCorrection': sequin7.c:7937:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sequin7.c: In function 'CombineToCreatePseudoGene': sequin7.c:14917:40: warning: 'int_strand' may be used uninitialized in this function [-Wuninitialized] sequin7.c:14803:48: warning: 'best_right' may be used uninitialized in this function [-Wuninitialized] sequin7.c:14803:18: warning: 'best_left' may be used uninitialized in this function [-Wuninitialized] sequin8.c: In function 'PopulateAAPopup': sequin8.c:1531:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'UserObjectPtrToUnverifiedDialog': sequin8.c:4313:28: warning: unused variable 'status' [-Wunused-variable] sequin8.c: In function 'SelectBestRepeatsFromList': sequin8.c:8316:18: warning: variable 'best_len' set but not used [-Wunused-but-set-variable] sequin8.c:8311:18: warning: variable 'strand2' set but not used [-Wunused-but-set-variable] sequin8.c:8311:9: warning: variable 'strand1' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'ExamineAln': sequin8.c:8832:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'GetWindowForReportType': sequin8.c:15341:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch] sequin8.c: In function 'SetWindowForReportType': sequin8.c:15372:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch] sequin8.c: In function 'GetReportConfigName': sequin8.c:15390:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch] sequin8.c: In function 'ScrollToDiscrepancyItem': sequin8.c:16161:17: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'GetReportEditButtonProc': sequin8.c:16944:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch] sequin8.c: In function 'GetReportName': sequin8.c:16968:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch] sequin8.c: In function 'SortVnpBymRNAPos': sequin8.c:19000:22: warning: variable 'mrna2' set but not used [-Wunused-but-set-variable] sequin8.c:19000:15: warning: variable 'mrna1' set but not used [-Wunused-but-set-variable] sequin8.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin8.c:452:13: warning: 'ExtendOnePartialFeatureToEndOrGap' defined but not used [-Wunused-function] sequin8.c:664:13: warning: 'FixReadingFrame' defined but not used [-Wunused-function] sequin8.c:1890:18: warning: 'SqnGetBioseqGivenSeqLoc' defined but not used [-Wunused-function] sequin8.c:6725:16: warning: 'CKA_ValidateSeqAlign' defined but not used [-Wunused-function] sequin8.c:6931:13: warning: 'CKA_ShowAln' defined but not used [-Wunused-function] sequin8.c:7259:16: warning: 'DoesRowContainPoint' defined but not used [-Wunused-function] sequin8.c:7711:16: warning: 'DoesFirstRepeatContainAllOtherRepeats' defined but not used [-Wunused-function] sequin8.c:8745:20: warning: 'GetNewBlastTPAHistAlignPiece' defined but not used [-Wunused-function] sequin8.c:8768:20: warning: 'GetOldBlastTPAHistAlignPiece' defined but not used [-Wunused-function] sequin8.c:8830:13: warning: 'ExamineAln' defined but not used [-Wunused-function] sequin8.c:13113:13: warning: 'ShowAssemblyAlignment' defined but not used [-Wunused-function] sequin8.c:15651:13: warning: 'VisitFeaturesInViewedBioseqs' defined but not used [-Wunused-function] sequin8.c:19897:13: warning: 'TrimCDSFortRNAOverlap' defined but not used [-Wunused-function] sequin8.c:20204:19: warning: 'DivideClickableItemListByEntityID' defined but not used [-Wunused-function] sequin9.c: In function 'DoVecScreens': sequin9.c:633:19: warning: variable 'hits' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'AcceptArgumentFormProc': sequin9.c:1468:18: warning: variable 'choice' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'ExtendBothEnds': sequin9.c:4777:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'Extend5Prime': sequin9.c:4845:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'Extend3Prime': sequin9.c:4905:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'FixProteinString': sequin9.c:5116:16: warning: variable 'start' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'ShiftStopForLengthChange': sequin9.c:5193:13: warning: variable 'start' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'ExtendProtein5': sequin9.c:5386:23: warning: variable 'new_stop' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'PrepareUpdateAlignmentForProtein': sequin9.c:5914:17: warning: variable 'changed_frame' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'DrawAlignDiffs': sequin9.c:7508:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable] sequin9.c:7508:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeAlignDetails': sequin9.c:7643:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeAlignSequence': sequin9.c:7692:56: warning: variable 'to' set but not used [-Wunused-but-set-variable] sequin9.c:7692:50: warning: variable 'from' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'DrawUpdateAlignmentDiffs': sequin9.c:13384:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable] sequin9.c:13384:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeAlignmentDetailsPicture': sequin9.c:13469:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeUpdateAlignmentSequenceString': sequin9.c:13551:44: warning: variable 'to' set but not used [-Wunused-but-set-variable] sequin9.c:13551:38: warning: variable 'from' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'SetPreviewSequenceSelectionByPosition': sequin9.c:15725:46: warning: variable 'curr_scroll' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'DoTestUpdateOneSequence': sequin9.c:16781:30: warning: variable 'update_bsp' set but not used [-Wunused-but-set-variable] sequin9.c:16780:30: warning: variable 'update_entityID' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'UpdateAllSequences': sequin9.c:17071:30: warning: unused variable 'update_entityID' [-Wunused-variable] sequin9.c:17070:30: warning: unused variable 'update_bsp' [-Wunused-variable] sequin9.c: In function 'CleanupUpdateMultiSequence': sequin9.c:17390:30: warning: unused variable 'entityIDList' [-Wunused-variable] sequin9.c: In function 'UpdateSequenceViaDownload': sequin9.c:18717:15: warning: variable 'is_na' set but not used [-Wunused-but-set-variable] sequin9.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] sequin9.c:215:13: warning: 'TruncateCDS' declared 'static' but never defined [-Wunused-function] sequin9.c:1405:16: warning: 'StrSaveNoNullEncodeSpaces' defined but not used [-Wunused-function] sequin9.c:17033:29: warning: 'FeatureUpdateNew' defined but not used [-Wunused-function] sequin9.c: In function 'TruncateSeqGraphValues': sequin9.c:3131:48: warning: 'fmax' may be used uninitialized in this function [-Wuninitialized] sequin9.c:3134:48: warning: 'fmin' may be used uninitialized in this function [-Wuninitialized] sequin9.c: In function 'UnmatchedSequenceDialog': sequin9.c:15996:16: warning: 'b' may be used uninitialized in this function [-Wuninitialized] sequin9.c: In function 'PrepareUpdateAlignmentForProtein': sequin9.c:6026:37: warning: 'gene_sfp' may be used uninitialized in this function [-Wuninitialized] sequin10.c: In function 'ApplyTableQuals': sequin10.c:4530:26: warning: variable 'fqtd' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'EraseAllFieldsWhenBlank': sequin10.c:5591:19: warning: unused variable 'columns' [-Wunused-variable] sequin10.c: In function 'ExternalSourceQualifierTableReader': sequin10.c:6515:22: warning: variable 'any_valid' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'LoadFeatureFieldTable': sequin10.c:8816:24: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'OrgModListsMatch': sequin10.c:10557:14: warning: variable 'found' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'SubtypeListsMatch': sequin10.c:10750:14: warning: variable 'found' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'RetranscribemRNA': sequin10.c:12121:21: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'TrimSequencesByAlignment': sequin10.c:12516:25: warning: variable 'b' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'AddOneFeatureBetween': sequin10.c:12907:14: warning: variable 'seqfeattype' set but not used [-Wunused-but-set-variable] sequin10.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin10.c:1452:19: warning: 'OrgModTableColumnListFree' defined but not used [-Wunused-function] sequin10.c:3013:19: warning: 'FreeTableData' defined but not used [-Wunused-function] sequin10.c:8884:16: warning: 'GetRevSectionSequence' defined but not used [-Wunused-function] sequin10.c:8902:16: warning: 'GetRevSectionInterval' defined but not used [-Wunused-function] sequin10.c: In function 'CreateOneProteinId': sequin10.c:15361:16: warning: 'sip_local' may be used uninitialized in this function [-Wuninitialized] sequin10.c: In function 'AutoDefBaseFormCommon': sequin10.c:763:12: warning: 'k' may be used uninitialized in this function [-Wuninitialized] sequin10.c:716:24: note: 'k' was declared here : Psequin gcc -o sbtedit -I. -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \ -lncbidesk -lncbitool -lvibrant -lncbiobj -lncbi sbtedit.c: In function 'LookupTaxonomyFunc': sbtedit.c:604:15: warning: variable 'rsult' set but not used [-Wunused-but-set-variable] sbtedit.c: At top level: sbtedit.c:48:14: warning: 'date_of_compilation' defined but not used [-Wunused-variable] sbtedit.c:49:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable] : sbtedit gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c udvmain.c: In function 'Nlm_Main': udvmain.c:232:8: warning: unused variable 'rcL' [-Wunused-variable] udvmain.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o udv -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF udvmain.o -lvibnet -lncbidesk \ -lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c ddvmain.c:147:13: warning: 'DDV_myargs' initialized and declared 'extern' [enabled by default] ddvmain.c:267:16: warning: 'DDV_UseNetwork' defined but not used [-Wunused-function] ddvmain.c: In function 'Nlm_Main': ddvmain.c:441:5: warning: 'UseNetwork' may be used uninitialized in this function [-Wuninitialized] gcc -o ddv -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF ddvmain.o -lvibnet -lncbidesk -lddvlib \ -lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi gcc -g -o blastcl3 -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF -DBLAST_CS_API blastall.c \ -lblastapi -lblast -lnetblast -lncbitool -lncbiobj -lncbi blastall.c: In function 'Main_old': blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c:1800:23: warning: variable 'handle_results' set but not used [-Wunused-but-set-variable] blastall.c:1795:20: warning: unused variable 'index' [-Wunused-variable] blastall.c:1794:42: warning: unused variable 'seqalignp' [-Wunused-variable] blastall.c: In function 'Nlm_Main': blastall.c:2963:13: warning: unused variable 'use_new_engine' [-Wunused-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] blastall.c:2931:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -g -o taxblast -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF taxblast_main.c \ -lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool \ -lncbiobj -lncbi -lm gcc -g -o idfetch -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF idfetch.c -lncbiid1 -lncbiobj -lncbi idfetch.c: In function 'Nlm_Main': idfetch.c:354:46: warning: variable 'any_type' set but not used [-Wunused-but-set-variable] idfetch.c:354:28: warning: variable 'dna_type' set but not used [-Wunused-but-set-variable] idfetch.c: In function 'IdFetch_func': idfetch.c:828:3: warning: missing braces around initializer [-Wmissing-braces] idfetch.c:828:3: warning: (near initialization for 'si.data') [-Wmissing-braces] idfetch.c:835:10: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] idfetch.c: In function 'BEGetUidsFromQuery': idfetch.c:1089:14: warning: unused variable 'e2rp' [-Wunused-variable] idfetch.c: In function 'IdFetch_func': idfetch.c:937:22: warning: 'gi_state' may be used uninitialized in this function [-Wuninitialized] idfetch.c: In function 'Nlm_Main': idfetch.c:497:13: warning: 'type_int' may be used uninitialized in this function [-Wuninitialized] idfetch.c:519:10: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] gcc -o bl2seq -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF bl2seq.c -lblastapi -lblast -lncbitool \ -lncbiid1 -lncbiobj -lncbi bl2seq.c: In function 'BioseqFromAccession': bl2seq.c:331:10: warning: unused variable 'dummy_ptr' [-Wunused-variable] bl2seq.c:330:10: warning: unused variable 'defline' [-Wunused-variable] bl2seq.c:329:10: warning: unused variable 'buf' [-Wunused-variable] bl2seq.c:328:17: warning: unused variable 'buf_length' [-Wunused-variable] bl2seq.c:328:9: warning: unused variable 'retval' [-Wunused-variable] bl2seq.c:327:15: warning: unused variable 'spp' [-Wunused-variable] bl2seq.c:322:24: warning: unused variable 'number' [-Wunused-variable] bl2seq.c: In function 'Main_new': bl2seq.c:803:21: warning: unused variable 'seqalign' [-Wunused-variable] bl2seq.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -g -o asn2gb -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF asn2gb.c -lncbitool -lncbiobj -lncbi asn2gb.c:967:13: warning: 'FreeUnpubAffil' defined but not used [-Wunused-function] asn2gb.c:1290:13: warning: 'CheckOrder' defined but not used [-Wunused-function] asn2gb.c: In function 'HandleMultipleRecords': asn2gb.c:1739:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c: In function 'CompareFlatFiles': asn2gb.c:1184:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1191:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1216:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1242:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1245:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1250:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1253:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c: In function 'ReportDiffs': asn2gb.c:1071:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1074:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1077:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1080:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1083:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1096:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c: In function 'Nlm_Main': asn2gb.c:1824:9: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] asn2gb.c:1774:15: note: 'entityID' was declared here gcc -o tbl2asn -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF tbl2asn.c -lncbitool -lncbiobj -lncbi tbl2asn.c: In function 'ProcessOneAnnot': tbl2asn.c:2529:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable] tbl2asn.c: In function 'MakeOneRnaTitle': tbl2asn.c:5123:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable] tbl2asn.c: In function 'FindSingleNucleotideOrNucProtSetInBioseqInSet': tbl2asn.c:6932:30: warning: variable 'single_result' set but not used [-Wunused-but-set-variable] tbl2asn.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] tbl2asn.c:2617:16: warning: 'ExceptionExplainsMismatch' defined but not used [-Wunused-function] tbl2asn.c: In function 'DBLinkFieldsConflict': tbl2asn.c:2130:40: warning: 'i' may be used uninitialized in this function [-Wuninitialized] tbl2asn.c:2092:18: note: 'i' was declared here tbl2asn.c: In function 'ProcessOneNuc': tbl2asn.c:2213:27: warning: 'uop' may be used uninitialized in this function [-Wuninitialized] tbl2asn.c:2205:17: note: 'uop' was declared here gcc -g -o gene2xml -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF gene2xml.c -lncbiobj -lncbi gene2xml.c: In function 'ProcessOneRecord': gene2xml.c:364:16: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -g -o entrez2 -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF entrez2.c -lncbidesk \ -lncbiobj -lvibrant -lncbi entrez2.c: In function 'Nlm_Main': entrez2.c:866:12: warning: variable 'server' set but not used [-Wunused-but-set-variable] entrez2.c:864:12: warning: variable 'port' set but not used [-Wunused-but-set-variable] entrez2.c:863:12: warning: variable 'path' set but not used [-Wunused-but-set-variable] entrez2.c: At top level: entrez2.c:724:13: warning: 'AboutProc' defined but not used [-Wunused-function] : entrez2 gcc -g -o gbseqget -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF gbseqget.c -lncbiobj -lncbi gcc -g -o asn2all -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiobj -lncbi \ -lpthread asn2all.c: In function 'DoLockFarComponents': asn2all.c:67:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable] asn2all.c:67:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable] gcc -o asn2asn -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF asn2asn.c -lncbiobj -lncbi gcc -g -o asn2fsa -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF asn2fsa.c ncbithr.o \ -lncbitool -lncbiobj -lncbi -lpthread asn2fsa.c: In function 'AddBspToList': asn2fsa.c:216:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] asn2fsa.c: In function 'DoLockFarComponents': asn2fsa.c:406:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable] asn2fsa.c:406:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable] gcc -g -o asndisc -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF asndisc.c ncbithr.o -lncbiid1 \ -lncbitool -lncbiobj -lncbi -lpthread asndisc.c: In function 'ProcessMultipleRecord': asndisc.c:728:19: warning: variable 'memory_usage' set but not used [-Wunused-but-set-variable] asndisc.c:726:19: warning: variable 'detailed_report' set but not used [-Wunused-but-set-variable] asndisc.c:722:19: warning: variable 'subcit' set but not used [-Wunused-but-set-variable] gcc -o asnmacro -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF asnmacro.c -lblastapi -lblast -lncbitool \ -lncbiobj -lncbi ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/asnmacro.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmacro.h:1325:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmacro.h:1326:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmacro.h:1327:21: warning: 'amp' defined but not used [-Wunused-variable] asnmacro.c:147:20: warning: 'GlobalAlign2Seq' defined but not used [-Wunused-function] asnmacro.c: In function 'AsnIoFromOutputStream': asnmacro.c:233:14: warning: 'aip' may be used uninitialized in this function [-Wuninitialized] gcc -g -o asnval -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF asnval.c ncbithr.o -lncbiobj -lncbi \ -lpthread asnval.c: In function 'DoLockFarComponents': asnval.c:556:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable] asnval.c:556:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable] asnval.c: In function 'ReportBadTaxID': asnval.c:1049:5: warning: zero-length gnu_printf format string [-Wformat-zero-length] asnval.c:1058:5: warning: zero-length gnu_printf format string [-Wformat-zero-length] gcc -o cleanasn -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF cleanasn.c -lncbitool -lncbiobj -lncbi cleanasn.c: In function 'JournalIsPresent': cleanasn.c:8001:14: warning: variable 'is_issn' set but not used [-Wunused-but-set-variable] cleanasn.c: In function 'RemoveGIProc': cleanasn.c:8305:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] cleanasn.c: At top level: cleanasn.c:3854:13: warning: 'NormalizeSegSetTitle' defined but not used [-Wunused-function] cleanasn.c:3905:13: warning: 'CountParts' defined but not used [-Wunused-function] cleanasn.c:4063:13: warning: 'PrintPartsTitle' defined but not used [-Wunused-function] cleanasn.c:4076:13: warning: 'PrintSegSeqTitleBefore' defined but not used [-Wunused-function] cleanasn.c:4096:13: warning: 'PrintSegSeqTitleAfter' defined but not used [-Wunused-function] cleanasn.c:4116:13: warning: 'FindOneCds' defined but not used [-Wunused-function] cleanasn.c:6613:19: warning: 'DuplicateStringList' defined but not used [-Wunused-function] cleanasn.c:7647:13: warning: 'DoUnpublishedReport' defined but not used [-Wunused-function] cleanasn.c:9911:16: warning: 'PvtStrToLong' defined but not used [-Wunused-function] cleanasn.c:9952:13: warning: 'AccessionToGi' defined but not used [-Wunused-function] cleanasn.c: In function 'ReportAsnDiffs': cleanasn.c:2914:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'DoGBFFReport': cleanasn.c:5978:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5981:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:6007:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:6036:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:6094:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:6097:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'DoValidatorReport': cleanasn.c:6153:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:6156:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:6184:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'CppBasicCleanup': cleanasn.c:8686:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:8690:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:8716:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:8718:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:8720:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:8722:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:8724:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:8734:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'RemoveFeatEvInf': cleanasn.c:585:9: warning: 'nextqual' may be used uninitialized in this function [-Wuninitialized] gcc -g -o insdseqget -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF insdseqget.c -lncbiobj -lncbi gcc -g -o nps2gps -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF nps2gps.c -lncbitool -lncbiobj -lncbi nps2gps.c: In function 'LclMakeOneRnaTitle': nps2gps.c:417:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable] nps2gps.c: In function 'LoopThroughCDSs': nps2gps.c:910:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] nps2gps.c: At top level: nps2gps.c:584:17: warning: 'MakeIdFromLocusTag' defined but not used [-Wunused-function] gcc -o spidey -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF spideymain.c -lncbiid1 -lncbitool \ -lncbiobj -lncbi ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -g -o trna2sap -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF trna2sap.c -lncbiobj -lncbi trna2sap.c: In function 'ProcessOneRecord': trna2sap.c:290:28: warning: unused variable 'entityID' [-Wunused-variable] trna2sap.c: In function 'Nlm_Main': trna2sap.c:460:12: warning: variable 'tsp' set but not used [-Wunused-but-set-variable] gcc -g -o trna2tbl -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF trna2tbl.c trna2tbl.c: In function 'RunTrnaScan': trna2tbl.c:142:13: warning: unused variable 'str' [-Wunused-variable] trna2tbl.c:139:13: warning: unused variable 'speed' [-Wunused-variable] trna2tbl.c:127:13: warning: unused variable 'cmmd' [-Wunused-variable] trna2tbl.c: At top level: trna2tbl.c:232:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c cn3dmain.c: In function 'OpenMimeFile': cn3dmain.c:237:5: warning: "/*" within comment [-Wcomment] cn3dmain.c: In function 'NetConfigureProc': cn3dmain.c:267:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable] cn3dmain.c: In function 'Cn3D_PrintImage': cn3dmain.c:288:10: warning: variable 'pmldVec' set but not used [-Wunused-but-set-variable] cn3dmain.c:284:11: warning: unused variable 'pdnmlFirst' [-Wunused-variable] cn3dmain.c: In function 'Nlm_Main': cn3dmain.c:334:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable] cn3dmain.c: At top level: cn3dmain.c:246:25: warning: 'seqedprocs' defined but not used [-Wunused-variable] gcc -c -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF netentcf.c -o netentcf gcc -o Cn3D -g -O2 -fPIE -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -I../include -L../shlib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3dOGL -lncbidesk \ -lddvlib -lncbimmdb -lncbiNacc -lnetentr \ -lvibrantOGL -lncbiobj -lncbi make[2]: Leaving directory `/«PKGBUILDDIR»/build' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/«PKGBUILDDIR»' install -d debian/tmp/usr/lib/arm-linux-gnueabihf install -m 644 lib/* shlib/*.so.6.1.20120620 debian/tmp/usr/lib/arm-linux-gnueabihf for x in ncbiacc ncbiCacc netentr; do \ rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20120620 && \ ln -s libncbiNacc.so.6 \ debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \ ln -s libncbiNacc.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \ done for x in ncbicn3d vibrant; do \ rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20120620 && \ ln -s lib${x}OGL.so.6 \ debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \ ln -s lib${x}OGL.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \ done rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/libregexp.* cd debian/tmp/usr/lib/arm-linux-gnueabihf && \ for f in *.so.6.1.20120620; do \ base=`basename $f .so.6.1.20120620` && \ ln -s $f $base.so.6 && \ ln -s $f $base.so; \ done install -d debian/tmp/usr/include/ncbi cp -LRp include/* debian/tmp/usr/include/ncbi cd debian/tmp/usr/include/ncbi && \ rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h find debian/tmp/usr/include -type f | xargs chmod 644 install -d debian/tmp/usr/bin install `find build -type f -perm +111 -print` debian/tmp/usr/bin rm -f debian/tmp/usr/bin/*test* rm -f debian/tmp/usr/bin/*demo* rm -f debian/tmp/usr/bin/dosimple rm -f debian/tmp/usr/bin/ncbisort rm -f debian/tmp/usr/bin/cdscan rm -f debian/tmp/usr/bin/entrcmd rm -f debian/tmp/usr/bin/blast.REAL mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0 mv debian/tmp/usr/bin/blast debian/tmp/usr/bin/blast2 make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a debian/rules override_dh_installdocs make[1]: Entering directory `/«PKGBUILDDIR»' dh_installdocs install -m 644 config/README \ debian/libncbi6/usr/share/doc/libncbi6/README.config install -m 644 network/nsclilib/readme \ debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg install -m 644 doc/fa2htgs/README \ debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs install -m 644 sequin/README \ debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_installchangelogs make[1]: Entering directory `/«PKGBUILDDIR»' dh_installchangelogs -k README make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory `/«PKGBUILDDIR»' dh_link # otherwise runs too late to influence debian/installman debian/installman blast2 Use of qw(...) as parentheses is deprecated at debian/installman line 22. debian/installman blast2 blast Use of qw(...) as parentheses is deprecated at debian/installman line 22. debian/installman ncbi-tools-bin Use of qw(...) as parentheses is deprecated at debian/installman line 22. debian/installman ncbi-tools-x11 Use of qw(...) as parentheses is deprecated at debian/installman line 22. dh_installman make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a debian/rules override_dh_installmenu make[1]: Entering directory `/«PKGBUILDDIR»' debian/makemenu debian/ncbi-tools-x11.install debian/makemenu: Warning: No .desktop information for sbtedit debian/makemenu -v debian/ncbi-tools-bin.install debian/makemenu -v debian/blast2.install dh_installmenu make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a debian/rules override_dh_strip make[1]: Entering directory `/«PKGBUILDDIR»' dh_strip -plibncbi6 --dbg-package=libncbi6-dbg dh_strip -plibvibrant6a --dbg-package=libvibrant6a-dbg dh_strip -Nlibncbi6 -Nlibvibrant6a make[1]: Leaving directory `/«PKGBUILDDIR»' dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory `/«PKGBUILDDIR»' dh_gencontrol -pblast2 -- -v1:2.2.26.20120620-2 dh_gencontrol -Nblast2 make[1]: Leaving directory `/«PKGBUILDDIR»' dh_md5sums -a debian/rules override_dh_builddeb make[1]: Entering directory `/«PKGBUILDDIR»' dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme dh_builddeb: No packages to build. dh_builddeb -Nncbi-rrna-data dpkg-deb: building package `libncbi6' in `../libncbi6_6.1.20120620-2_armhf.deb'. dpkg-deb: building package `libncbi6-dev' in `../libncbi6-dev_6.1.20120620-2_armhf.deb'. dpkg-deb: building package `libncbi6-dbg' in `../libncbi6-dbg_6.1.20120620-2_armhf.deb'. dpkg-deb: building package `ncbi-tools-bin' in `../ncbi-tools-bin_6.1.20120620-2_armhf.deb'. dpkg-deb: building package `ncbi-tools-x11' in `../ncbi-tools-x11_6.1.20120620-2_armhf.deb'. dpkg-deb: building package `blast2' in `../blast2_2.2.26.20120620-2_armhf.deb'. dpkg-deb: building package `libvibrant6a' in `../libvibrant6a_6.1.20120620-2_armhf.deb'. dpkg-deb: building package `libvibrant6-dev' in `../libvibrant6-dev_6.1.20120620-2_armhf.deb'. dpkg-deb: building package `libvibrant6a-dbg' in `../libvibrant6a-dbg_6.1.20120620-2_armhf.deb'. make[1]: Leaving directory `/«PKGBUILDDIR»' dpkg-genchanges -B -mbuildd >../ncbi-tools6_6.1.20120620-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ncbi-tools6-6.1.20120620 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120705-0302 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ ncbi-tools6_6.1.20120620-2_armhf.changes: ───────────────────────────────────────── Format: 1.8 Date: Sun, 24 Jun 2012 22:54:29 -0400 Source: ncbi-tools6 Binary: libncbi6 libncbi6-dev libncbi6-dbg ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6a libvibrant6-dev libvibrant6a-dbg Architecture: armhf Version: 6.1.20120620-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Aaron M. Ucko Description: blast2 - Basic Local Alignment Search Tool libncbi6 - NCBI libraries for biology applications libncbi6-dbg - NCBI libraries for biology applications (debugging symbols) libncbi6-dev - NCBI libraries for biology applications (development files) libvibrant6-dev - NCBI libraries for graphic biology applications (development file libvibrant6a - NCBI libraries for graphic biology applications libvibrant6a-dbg - NCBI libraries for graphic biology applications (unstripped) ncbi-data - Platform-independent data for the NCBI toolkit ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities) ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities) Changes: ncbi-tools6 (6.1.20120620-2) unstable; urgency=low . [ Andreas Tille ] * debian/upstream: Strings containing ': ' need to be quoted. Checksums-Sha1: c23a234bc717ca256ba90bbbb1c020fa8d36183a 652518 blast2_2.2.26.20120620-2_armhf.deb d7d9bb1ad81ce1e19de88a353f789df831e3bf8a 4259094 libncbi6_6.1.20120620-2_armhf.deb 252a99a50168775c9feef52b2db4d68945debc34 6466892 libncbi6-dev_6.1.20120620-2_armhf.deb f94e40d422ff7812d18bb91961d4f7fbe91dd6fb 6369736 libncbi6-dbg_6.1.20120620-2_armhf.deb e91ec5d3351ad0053ffef30f542ee603155245f7 587264 ncbi-tools-bin_6.1.20120620-2_armhf.deb 47d9d0c537fab949f917d759b8592456fe76a32d 1220328 ncbi-tools-x11_6.1.20120620-2_armhf.deb d51a8c7779c3702bf93e51ab929eb81ada325c7d 1391370 libvibrant6a_6.1.20120620-2_armhf.deb effd7b0e73e08893f83307e3f7061e517acf48f6 2334096 libvibrant6-dev_6.1.20120620-2_armhf.deb 0451a1c611d1e12ab71f1367ea0dc6d602be159e 2504040 libvibrant6a-dbg_6.1.20120620-2_armhf.deb Checksums-Sha256: cfe4c5053a519c539801b00c3afde1282b150d055b7a3bd3bc2736bb8346899f 652518 blast2_2.2.26.20120620-2_armhf.deb bacdd20da82e39ff7b9533bc8131112cae8f9fa484109f71650bd74c2ffd25f7 4259094 libncbi6_6.1.20120620-2_armhf.deb 9537781114aecf21e2ce3f92ae6fe6661c731e8a77f3b96375f42f25716729df 6466892 libncbi6-dev_6.1.20120620-2_armhf.deb 02407c9d85339e4121e555e085ed4ce586bc1fe4e4c41dbbc1dd247ab68607d4 6369736 libncbi6-dbg_6.1.20120620-2_armhf.deb 75f9503be2a5fcbc9db30774c27204317e90b9f43621215cd7cb05031b4a076f 587264 ncbi-tools-bin_6.1.20120620-2_armhf.deb 00a6c467a45ffe699edfb6d90acd33815fa780488c837490950db1dc0f99aede 1220328 ncbi-tools-x11_6.1.20120620-2_armhf.deb 35e5d3b8f338336751bfe703cc24e267c6ba2fea21870c98816779e01a2eab0d 1391370 libvibrant6a_6.1.20120620-2_armhf.deb 005667fe2a1c012117a05c1b0547bd03a5d871a436c67e0db5db7e09a2c94b1c 2334096 libvibrant6-dev_6.1.20120620-2_armhf.deb a704f7529ece896f9f46b2d192eeab06c232237339d778f247ae7f35e67548c5 2504040 libvibrant6a-dbg_6.1.20120620-2_armhf.deb Files: 25b4680497e8f4dd74b752345c233205 652518 science optional blast2_2.2.26.20120620-2_armhf.deb 2605c5ccb3fefa6f482f146e5adc20e4 4259094 libs optional libncbi6_6.1.20120620-2_armhf.deb d752fe4ea8d5470910c80ae3eef94505 6466892 libdevel optional libncbi6-dev_6.1.20120620-2_armhf.deb 2682b2dc5a6dcf9bf8209fc44f3c158f 6369736 debug extra libncbi6-dbg_6.1.20120620-2_armhf.deb 83cf2b070c96333c587a0274d5e5ae30 587264 science optional ncbi-tools-bin_6.1.20120620-2_armhf.deb 4dfc929df62d9044e69d93a792cba258 1220328 science optional ncbi-tools-x11_6.1.20120620-2_armhf.deb 630e58a51b0542cb6a78f821e8fac130 1391370 libs optional libvibrant6a_6.1.20120620-2_armhf.deb ac9aec8de03e058d9cea2f01914031d7 2334096 libdevel optional libvibrant6-dev_6.1.20120620-2_armhf.deb 11c980651c78a179314700955811d014 2504040 debug extra libvibrant6a-dbg_6.1.20120620-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ blast2_2.2.26.20120620-2_armhf.deb ────────────────────────────────── new debian package, version 2.0. size 652518 bytes: control archive=2324 bytes. 872 bytes, 20 lines control 3180 bytes, 51 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: blast2 Source: ncbi-tools6 (6.1.20120620-2) Version: 1:2.2.26.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1173 Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0) Suggests: libvibrant6a, ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11 Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nih.gov/BLAST/ Description: Basic Local Alignment Search Tool The famous sequence alignment program. This is "official" NCBI version, #2. The blastall executable allows you to give a nucleotide or protein sequence to the program. It is compared against databases and a summary of matches is returned to the user. . Note that databases are not included in Debian; they must be retrieved manually. drwxr-xr-x root/root 0 2012-07-05 02:55 ./ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/menu/ -rw-r--r-- root/root 3147 2012-07-05 02:56 ./usr/share/menu/blast2 drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/doc/blast2/ -rw-r--r-- root/root 30073 2004-10-26 07:04 ./usr/share/doc/blast2/history.html -rw-r--r-- root/root 28065 2006-03-02 07:40 ./usr/share/doc/blast2/seedtop.html -rw-r--r-- root/root 8338 2005-08-24 08:20 ./usr/share/doc/blast2/blastclust.html -rw-r--r-- root/root 18160 2008-06-16 08:51 ./usr/share/doc/blast2/changelog.gz drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/doc/blast2/examples/ -rw-r--r-- root/root 1885 2009-01-12 10:48 ./usr/share/doc/blast2/examples/web_blast.pl.gz -rw-r--r-- root/root 25538 2006-03-02 07:40 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-rw-r--r-- root/root 11256 2004-07-02 07:41 ./usr/share/doc/blast2/megablast.html -rw-r--r-- root/root 1829 2004-05-17 08:07 ./usr/share/doc/blast2/bl2seq.html -rw-r--r-- root/root 16243 2008-10-02 09:01 ./usr/share/doc/blast2/blastdb.html -rw-r--r-- root/root 12158 2010-03-26 07:52 ./usr/share/doc/blast2/blast.html -rw-r--r-- root/root 9267 2004-10-12 08:33 ./usr/share/doc/blast2/formatrpsdb.html drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/doc-base/ -rw-r--r-- root/root 616 2012-07-05 00:20 ./usr/share/doc-base/blast2 drwxr-xr-x root/root 0 2012-07-05 02:55 ./usr/share/man/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/man/man1/ -rw-r--r-- root/root 1262 2012-07-05 02:55 ./usr/share/man/man1/formatrpsdb.1.gz -rw-r--r-- root/root 549 2012-07-05 02:55 ./usr/share/man/man1/copymat.1.gz -rw-r--r-- root/root 649 2012-07-05 02:55 ./usr/share/man/man1/makemat.1.gz -rw-r--r-- root/root 6954 2012-07-05 02:55 ./usr/share/man/man1/blast.1.gz -rw-r--r-- root/root 1614 2012-07-05 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02:56 ./usr/share/man/man1/blastpgp.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/blastcl3.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/blastall.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/blastall_old.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/impala.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/seedtop.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/blast2.1.gz -> blast.1.gz libncbi6_6.1.20120620-2_armhf.deb ───────────────────────────────── new debian package, version 2.0. size 4259094 bytes: control archive=73041 bytes. 681 bytes, 16 lines control 2203 bytes, 27 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 334 bytes, 15 lines shlibs 424797 bytes, 11219 lines symbols Package: libncbi6 Source: ncbi-tools6 Version: 6.1.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 9707 Pre-Depends: multiarch-support Depends: ncbi-data (= 6.1.20120620-2), libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications The NCBI Software Development Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. It allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc. drwxr-xr-x root/root 0 2012-07-05 02:55 ./ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/lib/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 105692 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicdr.so.6.1.20120620 -rw-r--r-- root/root 91836 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbitxc2.so.6.1.20120620 -rw-r--r-- root/root 548620 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libblast.so.6.1.20120620 -rw-r--r-- root/root 565120 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbimmdb.so.6.1.20120620 -rw-r--r-- root/root 33128 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbiid1.so.6.1.20120620 -rw-r--r-- root/root 5471312 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbiobj.so.6.1.20120620 -rw-r--r-- root/root 135300 2012-07-05 02:56 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-> libncbicdr.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libnetcli.so.6 -> libnetcli.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibgif.so.6 -> libvibgif.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/doc/libncbi6/README.gz -> changelog.gz libncbi6-dev_6.1.20120620-2_armhf.deb ───────────────────────────────────── new debian package, version 2.0. size 6466892 bytes: control archive=14001 bytes. 585 bytes, 16 lines control 33875 bytes, 503 lines md5sums Package: libncbi6-dev Source: ncbi-tools6 Version: 6.1.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 17625 Depends: libncbi6 (= 6.1.20120620-2) Recommends: ncbi-tools-bin Provides: ncbi-tools-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (development files) This package supplies 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5462 2007-12-04 12:06 ./usr/include/ncbi/medutil.h -rw-r--r-- root/root 3297 1998-11-20 12:03 ./usr/include/ncbi/vastsrv.h -rw-r--r-- root/root 2307 2001-11-02 14:35 ./usr/include/ncbi/fastadl.h -rw-r--r-- root/root 3439 1997-08-25 11:06 ./usr/include/ncbi/mconsist.h lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbimla.so -> libncbimla.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbiacc.so -> libncbiNacc.so lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libblastcompadj.so -> libblastcompadj.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbitool.so -> libncbitool.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbiCacc.so -> libncbiNacc.so lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbiNacc.so -> libncbiNacc.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 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2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbi.so -> libncbi.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libnetblast.so -> libnetblast.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/doc/libncbi6-dev/README.gz -> changelog.gz libncbi6-dbg_6.1.20120620-2_armhf.deb ───────────────────────────────────── new debian package, version 2.0. size 6369736 bytes: control archive=1525 bytes. 774 bytes, 20 lines control 1816 bytes, 18 lines md5sums Package: libncbi6-dbg Source: ncbi-tools6 Version: 6.1.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 7011 Depends: libncbi6 (= 6.1.20120620-2) Recommends: gdb Section: debug Priority: extra Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (debugging symbols) This package is useful to provide a backtrace with symbol names in a debugger; this facilitates interpretation of core dumps, and aids in finding logic errors in programs using the libraries in this package (or the libraries themselves). . Non-programmers will likely have little use for this package. 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None of the programs in this package require X; you can find the X-based utilities in the ncbi-tools-x11 package. 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-rwxr-xr-x root/root 35896 2012-07-05 02:56 ./usr/bin/getpub lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/doc/ncbi-tools-bin/README.gz -> changelog.gz ncbi-tools-x11_6.1.20120620-2_armhf.deb ─────────────────────────────────────── new debian package, version 2.0. size 1220328 bytes: control archive=2614 bytes. 792 bytes, 17 lines control 4060 bytes, 55 lines md5sums 528 bytes, 18 lines * postinst #!/bin/sh 293 bytes, 8 lines * postrm #!/bin/sh 68 bytes, 5 lines * prerm #!/bin/sh Package: ncbi-tools-x11 Source: ncbi-tools6 Version: 6.1.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2369 Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libvibrant6a (<< 6.1.20120620.1), libvibrant6a (>= 6.1.20120620), libc6 (>= 2.13-28) Suggests: blast2, ncbi-tools-bin Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (X-based utilities) This package includes some X-based utilities distributed with the NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These programs are not part of ncbi-tools-bin because they depend on several additional library packages. drwxr-xr-x root/root 0 2012-07-05 02:55 ./ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/mime/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/mime/packages/ -rw-r--r-- root/root 158 2012-07-05 00:20 ./usr/lib/mime/packages/ncbi-tools-x11 drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/applications/ -rw-r--r-- root/root 204 2012-07-05 02:56 ./usr/share/applications/Cn3D-3.0.desktop -rw-r--r-- root/root 258 2012-07-05 02:56 ./usr/share/applications/Psequin.desktop -rw-r--r-- root/root 232 2012-07-05 02:56 ./usr/share/applications/ddv.desktop -rw-r--r-- root/root 237 2012-07-05 02:56 ./usr/share/applications/entrez2.desktop -rw-r--r-- root/root 212 2012-07-05 02:56 ./usr/share/applications/udv.desktop drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/menu/ -rw-r--r-- root/root 951 2012-07-05 02:56 ./usr/share/menu/ncbi-tools-x11 drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/doc/ncbi-tools-x11/ -rw-r--r-- root/root 18160 2008-06-16 08:51 ./usr/share/doc/ncbi-tools-x11/changelog.gz -rw-r--r-- root/root 14168 2012-07-05 00:20 ./usr/share/doc/ncbi-tools-x11/changelog.Debian.gz drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/doc/ncbi-tools-x11/images/ -rw-r--r-- root/root 10779 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/nucset.png -rw-r--r-- root/root 15403 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/update.png -rw-r--r-- root/root 16275 2005-10-27 10:13 ./usr/share/doc/ncbi-tools-x11/images/desktop.png -rw-r--r-- root/root 7501 2005-10-27 12:24 ./usr/share/doc/ncbi-tools-x11/images/submit.png -rw-r--r-- root/root 11612 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/cds_edit.png -rw-r--r-- root/root 10958 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/organism.png -rw-r--r-- root/root 7926 2005-10-27 11:33 ./usr/share/doc/ncbi-tools-x11/images/authors.png -rw-r--r-- root/root 8587 2007-07-26 07:33 ./usr/share/doc/ncbi-tools-x11/images/loc_page.png -rw-r--r-- root/root 6311 2005-10-27 11:33 ./usr/share/doc/ncbi-tools-x11/images/contact.png -rw-r--r-- root/root 2050 2005-11-18 07:23 ./usr/share/doc/ncbi-tools-x11/images/logo.png -rw-r--r-- root/root 11731 2005-10-27 10:13 ./usr/share/doc/ncbi-tools-x11/images/protein2.png -rw-r--r-- root/root 7651 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/graphic.png -rw-r--r-- root/root 10516 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/nucsing1.png -rw-r--r-- root/root 6736 2005-10-27 11:33 ./usr/share/doc/ncbi-tools-x11/images/affil.png -rw-r--r-- root/root 7264 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/annot.png -rw-r--r-- root/root 4891 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/net_cfg.png -rw-r--r-- root/root 2142 2009-06-19 12:50 ./usr/share/doc/ncbi-tools-x11/images/ncbi_sequin.css -rw-r--r-- root/root 6762 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/format.png -rw-r--r-- root/root 6850 2010-12-17 07:42 ./usr/share/doc/ncbi-tools-x11/images/welcome.png -rw-r--r-- root/root 9717 2012-05-15 08:32 ./usr/share/doc/ncbi-tools-x11/images/nucaln.png -rw-r--r-- root/root 11381 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/nucsing2.png -rw-r--r-- root/root 17497 2005-10-27 10:13 ./usr/share/doc/ncbi-tools-x11/images/sequence.png -rw-r--r-- root/root 28763 2005-10-27 10:13 ./usr/share/doc/ncbi-tools-x11/images/genbank.png -rw-r--r-- root/root 10712 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/protein1.png -rw-r--r-- root/root 20211 2005-10-27 06:41 ./usr/share/doc/ncbi-tools-x11/images/validate.png -rw-r--r-- root/root 12444 2012-05-15 12:22 ./usr/share/doc/ncbi-tools-x11/images/props_pg.png -rw-r--r-- root/root 8922 2012-07-05 00:20 ./usr/share/doc/ncbi-tools-x11/firewall.html -rw-r--r-- root/root 2123 2012-07-05 02:54 ./usr/share/doc/ncbi-tools-x11/README.sequin.gz -rw-r--r-- root/root 1623 2012-07-05 00:20 ./usr/share/doc/ncbi-tools-x11/copyright -rw-r--r-- root/root 70153 2009-06-19 12:49 ./usr/share/doc/ncbi-tools-x11/sequin.htm -rw-r--r-- root/root 3658 1999-11-01 14:01 ./usr/share/doc/ncbi-tools-x11/firedialog.gif drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/doc-base/ -rw-r--r-- root/root 547 2012-07-05 00:20 ./usr/share/doc-base/sequin -rw-r--r-- root/root 470 2012-07-05 00:20 ./usr/share/doc-base/ncbi-tools-firewall drwxr-xr-x root/root 0 2012-07-05 02:55 ./usr/share/man/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/man/man1/ -rw-r--r-- root/root 522 2012-07-05 02:55 ./usr/share/man/man1/Cn3D-3.0.1.gz -rw-r--r-- root/root 1291 2012-07-05 02:55 ./usr/share/man/man1/Psequin.1.gz -rw-r--r-- root/root 412 2012-07-05 02:55 ./usr/share/man/man1/entrez2.1.gz -rw-r--r-- root/root 289 2012-07-05 02:55 ./usr/share/man/man1/udv.1.gz -rw-r--r-- root/root 315 2012-07-05 02:55 ./usr/share/man/man1/sbtedit.1.gz -rw-r--r-- root/root 398 2012-07-05 02:55 ./usr/share/man/man1/ddv.1.gz drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 65 2012-07-05 00:20 ./usr/share/lintian/overrides/ncbi-tools-x11 drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/bin/ -rwxr-xr-x root/root 9688 2012-07-05 02:56 ./usr/bin/ddv -rwxr-xr-x root/root 9620 2012-07-05 02:56 ./usr/bin/udv -rwxr-xr-x root/root 34188 2012-07-05 02:56 ./usr/bin/sbtedit -rwxr-xr-x root/root 9608 2012-07-05 02:56 ./usr/bin/Cn3D-3.0 -rwxr-xr-x root/root 1867776 2012-07-05 02:56 ./usr/bin/Psequin -rwxr-xr-x root/root 21896 2012-07-05 02:56 ./usr/bin/entrez2 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/doc/ncbi-tools-x11/README.gz -> changelog.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/entrez.1.gz -> entrez2.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/man/man1/sequin.1.gz -> Psequin.1.gz lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/bin/sequin -> Psequin lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/bin/entrez -> entrez2 libvibrant6a_6.1.20120620-2_armhf.deb ───────────────────────────────────── new debian package, version 2.0. size 1391370 bytes: control archive=17583 bytes. 786 bytes, 16 lines control 752 bytes, 9 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 136 bytes, 5 lines shlibs 90901 bytes, 2449 lines symbols Package: libvibrant6a Source: ncbi-tools6 Version: 6.1.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2789 Pre-Depends: multiarch-support Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), lesstif2 (>= 1:0.94.4), libc6 (>= 2.13-28), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libx11-6, libxmu6, libxt6 Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for graphic biology applications This is the library for those who just want to run Vibrant applications. It also includes a wrapper (vibrate) that allows many NCBI applications to provide a GUI for selecting options. drwxr-xr-x root/root 0 2012-07-05 02:55 ./ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/lib/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 87640 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libddvlib.so.6.1.20120620 -rw-r--r-- root/root 96784 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibnet.so.6.1.20120620 -rw-r--r-- root/root 149908 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so.6.1.20120620 -rw-r--r-- root/root 534944 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.so.6.1.20120620 -rw-r--r-- root/root 1819740 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbidesk.so.6.1.20120620 drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/doc/libvibrant6a/ -rw-r--r-- root/root 18160 2008-06-16 08:51 ./usr/share/doc/libvibrant6a/changelog.gz -rw-r--r-- root/root 14168 2012-07-05 00:20 ./usr/share/doc/libvibrant6a/changelog.Debian.gz -rw-r--r-- root/root 1623 2012-07-05 00:20 ./usr/share/doc/libvibrant6a/copyright drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 48 2012-07-05 00:20 ./usr/share/lintian/overrides/libvibrant6a lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibrant.so.6 -> libvibrantOGL.so.6 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so.6 -> libncbicn3dOGL.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.so.6 -> libvibrantOGL.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicn3d.so.6 -> libncbicn3dOGL.so.6 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libddvlib.so.6 -> libddvlib.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibnet.so.6 -> libvibnet.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbidesk.so.6 -> libncbidesk.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/doc/libvibrant6a/README.gz -> changelog.gz libvibrant6-dev_6.1.20120620-2_armhf.deb ──────────────────────────────────────── new debian package, version 2.0. size 2334096 bytes: control archive=4124 bytes. 614 bytes, 14 lines control 7633 bytes, 122 lines md5sums 337 bytes, 13 lines * postinst #!/bin/sh Package: libvibrant6-dev Source: ncbi-tools6 Version: 6.1.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 5733 Depends: lesstif2-dev, libglu1-mesa-dev | libglu-dev, libncbi6-dev (= 6.1.20120620-2), libvibrant6a (= 6.1.20120620-2), libxmu-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for graphic biology applications (development files) Vibrant allows you to develop portable (Motif, MS-Windows, Mac-OS) graphic biological applications. drwxr-xr-x root/root 0 2012-07-05 02:55 ./ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/lib/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 216902 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.a -rw-r--r-- root/root 756094 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.a -rw-r--r-- root/root 107100 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libddvlib.a -rw-r--r-- root/root 208982 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicn3d.a -rw-r--r-- root/root 146600 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibgif.a -rw-r--r-- root/root 712210 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibrant.a 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11:36 ./usr/include/ncbi/ncbiport.h -rw-r--r-- root/root 951 1998-07-06 14:20 ./usr/include/ncbi/seqscrl.h -rw-r--r-- root/root 32105 2012-05-14 12:57 ./usr/include/ncbi/dlogutil.h -rw-r--r-- root/root 1978 2006-07-13 10:13 ./usr/include/ncbi/seqgrphx.h -rw-r--r-- root/root 10039 2001-08-08 15:47 ./usr/include/ncbi/dotviewer.h -rw-r--r-- root/root 5320 2000-07-12 08:38 ./usr/include/ncbi/ddvclick.h -rw-r--r-- root/root 9422 2002-01-17 11:05 ./usr/include/ncbi/ingenwin.h -rw-r--r-- root/root 3304 1999-10-20 16:13 ./usr/include/ncbi/ncbigif.h -rw-r--r-- root/root 9730 1997-08-25 11:56 ./usr/include/ncbi/pictur3d.h -rw-r--r-- root/root 6284 2010-09-21 05:54 ./usr/include/ncbi/cdrgn.h -rw-r--r-- root/root 15659 2011-04-08 09:03 ./usr/include/ncbi/bspview.h -rw-r--r-- root/root 3664 2010-01-22 08:26 ./usr/include/ncbi/vsmfile.h -rw-r--r-- root/root 5101 1999-10-04 10:16 ./usr/include/ncbi/mappingp.h -rw-r--r-- root/root 5367 1997-09-16 14:20 ./usr/include/ncbi/fea2seg.h -rw-r--r-- root/root 5489 1999-05-06 14:23 ./usr/include/ncbi/vibrant.h -rw-r--r-- root/root 295 1997-08-25 11:22 ./usr/include/ncbi/legend.h -rw-r--r-- root/root 4460 2001-10-16 06:13 ./usr/include/ncbi/ingenext.h -rw-r--r-- root/root 6121 2007-09-10 11:35 ./usr/include/ncbi/salpanel.h -rw-r--r-- root/root 4721 2007-10-18 08:18 ./usr/include/ncbi/vsm.h -rw-r--r-- root/root 5830 1998-12-01 08:59 ./usr/include/ncbi/glbpic.h -rw-r--r-- root/root 4672 2002-03-20 14:10 ./usr/include/ncbi/drawingp.h -rw-r--r-- root/root 14796 2008-02-29 11:36 ./usr/include/ncbi/ncbidraw.h -rw-r--r-- root/root 9546 2000-07-12 15:22 ./usr/include/ncbi/ddvpanel.h -rw-r--r-- root/root 1501 1997-08-25 11:24 ./usr/include/ncbi/seqmtrx.h -rw-r--r-- root/root 2539 1998-04-01 10:17 ./usr/include/ncbi/saldist.h -rw-r--r-- root/root 3176 2006-07-13 10:13 ./usr/include/ncbi/saled.h -rw-r--r-- root/root 1240 2006-07-13 10:13 ./usr/include/ncbi/seqanal.h -rw-r--r-- root/root 2819 1999-10-29 07:15 ./usr/include/ncbi/cn3dentr.h -rw-r--r-- root/root 7615 2012-05-18 07:27 ./usr/include/ncbi/macrodlg.h -rw-r--r-- root/root 6743 2011-10-05 07:46 ./usr/include/ncbi/vsmutil.h -rw-r--r-- root/root 27253 2006-07-13 10:13 ./usr/include/ncbi/udviewer.h -rw-r--r-- root/root 19940 2004-02-17 11:22 ./usr/include/ncbi/picture.h -rw-r--r-- root/root 25957 2008-04-29 06:43 ./usr/include/ncbi/vibrgb.h -rw-r--r-- root/root 2903 2010-12-06 09:16 ./usr/include/ncbi/seqpanel.h -rw-r--r-- root/root 3373 1997-11-19 09:38 ./usr/include/ncbi/viewerp.h -rw-r--r-- root/root 1616 1997-12-15 13:19 ./usr/include/ncbi/vibgraph.h -rw-r--r-- root/root 2710 1998-07-22 11:59 ./usr/include/ncbi/layout.h -rw-r--r-- root/root 4028 1997-08-25 11:21 ./usr/include/ncbi/apparam.h -rw-r--r-- root/root 23354 2011-09-20 11:38 ./usr/include/ncbi/vibdefns.h -rw-r--r-- root/root 11963 2000-07-17 10:46 ./usr/include/ncbi/ddvopen.h -rw-r--r-- root/root 241 1997-09-29 10:36 ./usr/include/ncbi/vibtree.h -rw-r--r-- root/root 4750 2002-08-07 11:13 ./usr/include/ncbi/picturep.h -rw-r--r-- root/root 675 1997-08-25 11:24 ./usr/include/ncbi/seqfltr.h -rw-r--r-- root/root 5649 2000-04-27 06:36 ./usr/include/ncbi/seqcons.h -rw-r--r-- root/root 2020 2009-04-10 08:46 ./usr/include/ncbi/valdlg.h -rw-r--r-- root/root 5627 2002-01-23 13:24 ./usr/include/ncbi/entrez2.h -rw-r--r-- root/root 11155 2006-07-13 10:13 ./usr/include/ncbi/ingengraph.h -rw-r--r-- root/root 10913 1998-12-01 08:47 ./usr/include/ncbi/fstyle.h -rw-r--r-- root/root 6700 2011-08-03 12:30 ./usr/include/ncbi/import.h -rw-r--r-- root/root 15032 2000-04-24 17:22 ./usr/include/ncbi/algorend.h -rw-r--r-- root/root 3740 2005-05-24 06:28 ./usr/include/ncbi/seqsub.h -rw-r--r-- root/root 12888 1998-03-21 19:01 ./usr/include/ncbi/vibtypes.h -rw-r--r-- root/root 3123 1998-10-13 10:13 ./usr/include/ncbi/gphdraw.h -rw-r--r-- root/root 7758 2002-03-20 14:10 ./usr/include/ncbi/viewer.h -rw-r--r-- root/root 1086 1997-10-08 13:17 ./usr/include/ncbi/prtgene.h -rw-r--r-- root/root 9343 2000-07-08 13:43 ./usr/include/ncbi/cn3dshim.h -rw-r--r-- root/root 11321 2006-07-13 10:06 ./usr/include/ncbi/udvseq.h -rw-r--r-- root/root 13885 2008-04-29 06:53 ./usr/include/ncbi/document.h -rw-r--r-- root/root 10669 2001-03-28 08:06 ./usr/include/ncbi/treeview.h -rw-r--r-- root/root 4069 1997-08-25 11:56 ./usr/include/ncbi/panels.h -rw-r--r-- root/root 3713 1998-03-31 13:22 ./usr/include/ncbi/imagelst.h -rw-r--r-- root/root 23853 2011-09-20 11:41 ./usr/include/ncbi/vibforms.h -rw-r--r-- root/root 2826 1997-08-25 11:24 ./usr/include/ncbi/sdisplay.h -rw-r--r-- root/root 11193 2001-01-29 12:35 ./usr/include/ncbi/ddvcreate.h -rw-r--r-- root/root 4127 2006-07-13 10:13 ./usr/include/ncbi/vsmpriv.h -rw-r--r-- root/root 7897 2000-07-08 13:43 ./usr/include/ncbi/udvdef.h -rw-r--r-- root/root 13081 2000-07-17 06:32 ./usr/include/ncbi/ddvmain.h -rw-r--r-- root/root 49398 2011-09-20 11:38 ./usr/include/ncbi/vibprocs.h -rw-r--r-- root/root 2534 2000-03-17 14:48 ./usr/include/ncbi/cn3dstyl.h -rw-r--r-- root/root 5445 1998-08-12 16:04 ./usr/include/ncbi/ppict3d.h -rw-r--r-- root/root 16040 2012-06-20 06:46 ./usr/include/ncbi/cn3d.h -rw-r--r-- root/root 4593 1997-08-25 11:22 ./usr/include/ncbi/fstylep.h -rw-r--r-- root/root 2505 2006-12-13 09:26 ./usr/include/ncbi/vibmain.h -rw-r--r-- root/root 3887 2000-07-27 14:14 ./usr/include/ncbi/medview.h -rw-r--r-- root/root 2313 1999-10-29 07:15 ./usr/include/ncbi/cn3dxprt.h -rw-r--r-- root/root 8082 2000-03-17 16:06 ./usr/include/ncbi/cn3dmsg.h -rw-r--r-- root/root 5066 2006-07-13 10:13 ./usr/include/ncbi/salparam.h -rw-r--r-- root/root 6076 2000-07-08 13:43 ./usr/include/ncbi/cn3dopen.h -rw-r--r-- root/root 2684 1998-09-16 12:00 ./usr/include/ncbi/gxydraw.h -rw-r--r-- root/root 3650 2003-11-20 10:36 ./usr/include/ncbi/salogif.h -rw-r--r-- root/root 5600 2000-07-24 15:00 ./usr/include/ncbi/ddvgraph.h -rw-r--r-- root/root 2954 1997-08-25 11:55 ./usr/include/ncbi/diagnost.h -rw-r--r-- root/root 5896 1998-09-16 10:46 ./usr/include/ncbi/urkgraph.h -rw-r--r-- root/root 337 1997-08-25 11:24 ./usr/include/ncbi/seqpcc.h -rw-r--r-- root/root 4737 2000-04-07 17:37 ./usr/include/ncbi/cn3dmodl.h -rw-r--r-- root/root 15278 2000-07-28 14:05 ./usr/include/ncbi/shim3d.h -rw-r--r-- root/root 4679 2010-07-20 10:01 ./usr/include/ncbi/pubdesc.h -rw-r--r-- root/root 14693 2006-07-13 10:13 ./usr/include/ncbi/drawseq.h -rw-r--r-- root/root 2315 1998-09-16 12:00 ./usr/include/ncbi/gtrdraw.h -rw-r--r-- root/root 11560 2012-05-21 09:16 ./usr/include/ncbi/saledit.h -rw-r--r-- root/root 2408 1999-10-29 07:15 ./usr/include/ncbi/cn3dmsel.h -rw-r--r-- root/root 6237 1997-08-25 11:55 ./usr/include/ncbi/image.h -rw-r--r-- root/root 264 1997-10-01 06:30 ./usr/include/ncbi/vibpcc.h -rw-r--r-- root/root 317 1997-10-09 14:02 ./usr/include/ncbi/vibfltr.h -rw-r--r-- root/root 2391 1999-10-29 07:15 ./usr/include/ncbi/cn3dmesh.h -rw-r--r-- root/root 7553 2000-03-08 13:46 ./usr/include/ncbi/cn3dmain.h -rw-r--r-- root/root 15567 2000-01-10 17:16 ./usr/include/ncbi/viewer3d.h -rw-r--r-- root/root 2526 2000-03-22 15:17 ./usr/include/ncbi/cn3dsave.h -rw-r--r-- root/root 20306 2008-02-29 11:36 ./usr/include/ncbi/vibincld.h -rw-r--r-- root/root 3944 2000-07-26 10:26 ./usr/include/ncbi/salfiles.h -rw-r--r-- root/root 3925 1999-06-07 08:41 ./usr/include/ncbi/odlbox.h -rw-r--r-- root/root 8697 2004-04-01 05:43 ./usr/include/ncbi/vibmouse.h -rw-r--r-- root/root 3586 1999-03-17 09:05 ./usr/include/ncbi/dotmatrx.h -rw-r--r-- root/root 4375 1999-08-12 11:31 ./usr/include/ncbi/treevint.h -rw-r--r-- root/root 3359 1997-09-16 13:11 ./usr/include/ncbi/mapgene.h -rw-r--r-- root/root 7216 2000-07-08 13:44 ./usr/include/ncbi/entrez.h -rw-r--r-- root/root 1340 2006-07-13 10:13 ./usr/include/ncbi/seqgraph.h -rw-r--r-- root/root 491 1997-08-25 11:21 ./usr/include/ncbi/aacomp.h lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so -> libncbicn3dOGL.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.so -> libvibrantOGL.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbicn3d.so -> libncbicn3dOGL.so lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libddvlib.so -> libddvlib.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibnet.so -> libvibnet.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libncbidesk.so -> libncbidesk.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibgif.so -> libvibgif.so.6.1.20120620 lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/lib/arm-linux-gnueabihf/libvibrant.so -> libvibrantOGL.so lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/doc/libvibrant6-dev/README.gz -> changelog.gz libvibrant6a-dbg_6.1.20120620-2_armhf.deb ───────────────────────────────────────── new debian package, version 2.0. size 2504040 bytes: control archive=1055 bytes. 829 bytes, 21 lines control 768 bytes, 8 lines md5sums Package: libvibrant6a-dbg Source: ncbi-tools6 Version: 6.1.20120620-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2840 Depends: libvibrant6a (= 6.1.20120620-2) Recommends: gdb Suggests: libncbi6-dbg (= 6.1.20120620-2) Section: debug Priority: extra Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for graphic biology applications (unstripped) This package is useful to provide a backtrace with symbol names in a debugger; this facilitates interpretation of core dumps, and aids in finding logic errors in programs using the libraries in this package (or the libraries themselves). . Non-programmers will likely have little use for this package. See the libvibrant6a package for more information. drwxr-xr-x root/root 0 2012-07-05 02:55 ./ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/debug/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/debug/.build-id/ae/ -rw-r--r-- root/root 584663 2012-07-05 02:56 ./usr/lib/debug/.build-id/ae/b75935f0c39c73b86dc867c6a2778ae581ce0f.debug drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/debug/.build-id/b9/ -rw-r--r-- root/root 102807 2012-07-05 02:56 ./usr/lib/debug/.build-id/b9/6aa2373ea4558a5cd2fc4bd501e216d1738ae8.debug drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/debug/.build-id/b3/ -rw-r--r-- root/root 106607 2012-07-05 02:56 ./usr/lib/debug/.build-id/b3/306c13417b1c2392963a225961e8621d5156b4.debug drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/debug/.build-id/65/ -rw-r--r-- root/root 1840289 2012-07-05 02:56 ./usr/lib/debug/.build-id/65/208b9ca4cc55910e6d0cbe2ee3ab3d2cdc89ed.debug drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/lib/debug/.build-id/a6/ -rw-r--r-- root/root 182421 2012-07-05 02:56 ./usr/lib/debug/.build-id/a6/a2432b26f4da090b5badbcd999049755078bae.debug drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/ drwxr-xr-x root/root 0 2012-07-05 02:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-05 02:56 ./usr/share/doc/libvibrant6a-dbg/ -rw-r--r-- root/root 18160 2008-06-16 08:51 ./usr/share/doc/libvibrant6a-dbg/changelog.gz -rw-r--r-- root/root 14168 2012-07-05 00:20 ./usr/share/doc/libvibrant6a-dbg/changelog.Debian.gz -rw-r--r-- root/root 1623 2012-07-05 00:20 ./usr/share/doc/libvibrant6a-dbg/copyright lrwxrwxrwx root/root 0 2012-07-05 02:56 ./usr/share/doc/libvibrant6a-dbg/README.gz -> changelog.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* csh* debhelper* file* fontconfig-config* gettext* gettext-base* groff-base* html2text* intltool-debian* lesstif2* lesstif2-dev* libasprintf0c2* libbsd0* libcroco3* libdrm2* libexpat1* libexpat1-dev* libffi5* libfontconfig1* libfontconfig1-dev* libfreetype6* libfreetype6-dev* libgettextpo0* libgl1-mesa-dev* libgl1-mesa-glx* libglapi-mesa* libglib2.0-0* libglu1-mesa* libglu1-mesa-dev* libice-dev* libice6* libmagic1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpng12-0* libpng12-dev* libpopt0* libpthread-stubs0* libpthread-stubs0-dev* libsm-dev* libsm6* libunistring0* libx11-6* libx11-data* libx11-dev* libx11-xcb1* libxau-dev* libxau6* libxcb-glx0* libxcb1* libxcb1-dev* libxdamage1* libxdmcp-dev* libxdmcp6* libxext-dev* libxext6* libxfixes3* libxft-dev* libxft2* libxml2* libxmu-dev* libxmu-headers* libxmu6* libxp-dev* libxp6* libxrender-dev* libxrender1* libxt-dev* libxt6* libxxf86vm1* man-db* mesa-common-dev* pkg-config* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-ncbi-tools6-dummy* ttf-dejavu-core* x11-common* x11proto-core-dev* x11proto-input-dev* x11proto-kb-dev* x11proto-print-dev* x11proto-render-dev* x11proto-xext-dev* xorg-sgml-doctools* xtrans-dev* zlib1g-dev* 0 upgraded, 0 newly installed, 90 to remove and 0 not upgraded. After this operation, 62.0 MB disk space will be freed. (Reading database ... 14453 files and directories currently installed.) Removing sbuild-build-depends-ncbi-tools6-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing csh ... Purging configuration files for csh ... Removing file ... Removing lesstif2-dev ... Removing libxft-dev ... Removing libxft2:armhf ... Purging configuration files for libxft2:armhf ... Removing libfontconfig1-dev ... Removing libfontconfig1:armhf ... Purging configuration files for libfontconfig1:armhf ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... 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Purging configuration files for libxdamage1:armhf ... Removing libx11-xcb1:armhf ... Purging configuration files for libx11-xcb1:armhf ... Removing libx11-6:armhf ... Purging configuration files for libx11-6:armhf ... Removing libx11-data ... Removing libxau-dev:armhf ... Removing libxcb-glx0:armhf ... Purging configuration files for libxcb-glx0:armhf ... Removing libxcb1:armhf ... Purging configuration files for libxcb1:armhf ... Removing libxau6:armhf ... Purging configuration files for libxau6:armhf ... Removing libxdmcp-dev:armhf ... Removing libxdmcp6:armhf ... Purging configuration files for libxdmcp6:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... Removing ttf-dejavu-core ... Removing x11-common ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing x11proto-xext-dev ... Removing x11proto-render-dev ... Removing x11proto-input-dev ... Removing x11proto-core-dev ... Removing x11proto-kb-dev ... Removing x11proto-print-dev ... Removing xorg-sgml-doctools ... Removing xtrans-dev ... Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 614884 Build-Time: 9744 Distribution: testing Host Architecture: armhf Install-Time: 148 Job: ncbi-tools6_6.1.20120620-2 Machine Architecture: armhf Package: ncbi-tools6 Package-Time: 9955 Source-Version: 6.1.20120620-2 Space: 614884 Status: successful Version: 6.1.20120620-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120705-0302 Build needed 02:45:55, 614884k disc space