sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build01.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ melting 4.3c-2 (armhf) 26 Jul 2012 14:40 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: melting Version: 4.3c-2 Source Version: 4.3c-2 Distribution: wheezy-staging Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf W: line 7 [wheezy-staging-armhf-sbuild]: Deprecated key ‘script-config’ used I: This option will be removed in the future; please update your configuration W: line 7 [testing-armhf-sbuild]: Deprecated key ‘script-config’ used I: NOTICE: Log filtering will replace 'build/melting-JM3Hnu/melting-4.3c' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/melting-JM3Hnu' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/wheezy-staging-armhf-sbuild-9fc7f23f-3009-4d8a-baac-fa079d6935ab' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://archive.raspbian.lan wheezy-staging InRelease Hit http://archive.raspbian.lan wheezy-staging/main Sources Hit http://archive.raspbian.lan wheezy-staging/main armhf Packages Ign http://archive.raspbian.lan wheezy-staging/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'melting' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/melting/trunk/ Need to get 1409 kB of source archives. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main melting 4.3c-2 (dsc) [1407 B] Get:2 http://archive.raspbian.lan/raspbian/ wheezy-staging/main melting 4.3c-2 (tar) [1402 kB] Get:3 http://archive.raspbian.lan/raspbian/ wheezy-staging/main melting 4.3c-2 (diff) [5369 B] Fetched 1409 kB in 0s (3288 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-FnZQbS/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10701 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9) Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9) dpkg-deb: building package `sbuild-build-depends-melting-dummy' in `/«BUILDDIR»/resolver-N8hJ6b/apt_archive/sbuild-build-depends-melting-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install melting build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-melting-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 21 newly installed, 0 to remove and 2 not upgraded. Need to get 0 B/9406 kB of archives. After this operation, 24.4 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10701 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-4_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.3-1_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package libgettextpo0:armhf. Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-9_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.2-1_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-2_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package sbuild-build-depends-melting-dummy. Unpacking sbuild-build-depends-melting-dummy (from .../sbuild-build-depends-melting-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-2) ... Setting up libxml2:armhf (2.8.0+dfsg1-4) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-9) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-9) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up sbuild-build-depends-melting-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-8+rpi1 gcc-4.6_4.6.3-8+rpi1 libc6-dev_2.13-33 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-8+rpi1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 g++_4:4.6.3-7 g++-4.6_4.6.3-8+rpi1 gcc_4:4.6.3-7 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-8+rpi1 gcc-4.6-base_4.6.3-8+rpi1 gcc-4.7-base_4.7.1-2+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.3+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-5 libdpkg-perl_1.16.4.3 libffi5_3.0.10-3+b3 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-2+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-2+rpi1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-2 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libss2_1.42.4-3 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12+rpi1 perl-base_5.14.2-12+rpi1 perl-modules_5.14.2-12+rpi1 po-debconf_1.0.16+nmu2 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-melting-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.1 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Tue Apr 3 15:55:54 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./melting_4.3c-2.dsc dpkg-source: info: extracting melting in melting-4.3c dpkg-source: info: unpacking melting_4.3c.orig.tar.gz dpkg-source: info: unpacking melting_4.3c-2.debian.tar.gz dpkg-source: info: applying tkmelting.patch dpkg-source: info: applying 20_fix_manpage.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_ALIAS_NAME=chroot:wheezy-staging-armhf-sbuild SCHROOT_CHROOT_NAME=wheezy-staging-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=wheezy-staging-armhf-sbuild-9fc7f23f-3009-4d8a-baac-fa079d6935ab SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package melting dpkg-buildpackage: source version 4.3c-2 dpkg-source --before-build melting-4.3c dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory `/«PKGBUILDDIR»' dh_clean melting.o decode.o calcul.o melting make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make -f makefile.unices NNDIR=/usr/share/melting/NNFILES make[2]: Entering directory `/«PKGBUILDDIR»' gcc -Wall -pedantic -O3 -DNN_BASE=\"/usr/share/melting/NNFILES\" -D_FORTIFY_SOURCE=2 -c -o melting.o SRC/melting.c SRC/melting.c: In function 'main': SRC/melting.c:186:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/melting.c:247:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/melting.c:273:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/melting.c:299:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/melting.c:325:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/melting.c:356:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/melting.c:138:35: warning: array subscript is above array bounds [-Warray-bounds] gcc -Wall -pedantic -O3 -DNN_BASE=\"/usr/share/melting/NNFILES\" -D_FORTIFY_SOURCE=2 -c -o decode.o SRC/decode.c SRC/decode.c: In function 'read_dangends': SRC/decode.c:767:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/decode.c: In function 'read_inosine': SRC/decode.c:678:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/decode.c: In function 'read_mismatches': SRC/decode.c:593:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] SRC/decode.c: In function 'read_nn': SRC/decode.c:508:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] gcc -Wall -pedantic -O3 -DNN_BASE=\"/usr/share/melting/NNFILES\" -D_FORTIFY_SOURCE=2 -c -o calcul.o SRC/calcul.c gcc -Wall -pedantic -O3 -DNN_BASE=\"/usr/share/melting/NNFILES\" -o melting melting.o decode.o calcul.o -lm make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory `/«PKGBUILDDIR»' dh_install install -D BIN/tkmelting.pl /«PKGBUILDDIR»/debian/melting-gui/usr/bin/tkmelting install -m 644 -D BIN/melting.hlp /«PKGBUILDDIR»/debian/melting-gui/usr/share/melting/melting.hlp install -m 644 -D melting-gui.desktop /«PKGBUILDDIR»/debian/melting-gui/usr/share/applications/melting-gui.desktop make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package melting: unused substitution variable ${perl:Depends} dh_md5sums -a dh_builddeb -a dpkg-deb: building package `melting' in `../melting_4.3c-2_armhf.deb'. dpkg-genchanges -B -mbuildd >../melting_4.3c-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build melting-4.3c dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120726-1442 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ melting_4.3c-2_armhf.changes: ───────────────────────────── Format: 1.8 Date: Tue, 03 Apr 2012 17:27:35 +0200 Source: melting Binary: melting melting-gui Architecture: armhf Version: 4.3c-2 Distribution: wheezy-staging Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: melting - compute the melting temperature of nucleic acid duplex melting-gui - graphical interface to compute the melting temperature of nucleic Changes: melting (4.3c-2) unstable; urgency=low . [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream . * debian/source/format: 3.0 (quilt) * debian/upstream: Moved DOI+PMID to references * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Fixed Vcs fields * debian/changelog: Fixed DEP5 and verified using cme fix dpkg-copyright * debian/references: removed because content is now in debian/upstream * debhelper 9 (control+compat) * debian/rules: rewritten to use short dh Checksums-Sha1: 1a6ba3c292fd9316800085981e936363a5bd40cc 647308 melting_4.3c-2_armhf.deb Checksums-Sha256: 57f83fd5466fab7bad48a203b893e979e8b817b3f4e9d334b42e1064cf17d4cb 647308 melting_4.3c-2_armhf.deb Files: 2224b8f84f6099c44961fc2123182be9 647308 science optional melting_4.3c-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ melting_4.3c-2_armhf.deb ──────────────────────── new debian package, version 2.0. size 647308 bytes: control archive=3048 bytes. 886 bytes, 19 lines control 6484 bytes, 89 lines md5sums Package: melting Version: 4.3c-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 821 Depends: libc6 (>= 2.13-28) Suggests: melting-gui Section: science Priority: optional Homepage: http://www.ebi.ac.uk/compneur-srv/melting/ Description: compute the melting temperature of nucleic acid duplex This program computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program first computes the hybridisation enthalpy and entropy from the elementary parameters of each Crick's pair by the nearest-neighbor method. Then the melting temperature is computed. The set of thermodynamic parameters can be easily changed, for instance following an experimental breakthrough. drwxr-xr-x root/root 0 2012-07-26 14:42 ./ drwxr-xr-x root/root 0 2012-07-26 14:42 ./usr/ drwxr-xr-x root/root 0 2012-07-26 14:42 ./usr/share/ drwxr-xr-x root/root 0 2012-07-26 14:42 ./usr/share/melting/ drwxr-xr-x root/root 0 2009-04-03 03:23 ./usr/share/melting/NNFILES/ -rw-r--r-- root/root 2520 2009-05-20 06:12 ./usr/share/melting/NNFILES/all97a.nn -rw-r--r-- root/root 6800 2009-05-20 06:13 ./usr/share/melting/NNFILES/dnadnamm.nn -rw-r--r-- root/root 2351 2009-05-20 06:14 ./usr/share/melting/NNFILES/sug96a.nn -rw-r--r-- root/root 2368 2009-05-20 06:13 ./usr/share/melting/NNFILES/bre86a.nn -rw-r--r-- root/root 3354 2009-05-20 06:13 ./usr/share/melting/NNFILES/dnadnade.nn -rw-r--r-- root/root 2364 2009-05-20 06:14 ./usr/share/melting/NNFILES/san04a.nn -rw-r--r-- root/root 4139 2009-10-23 08:14 ./usr/share/melting/NNFILES/bre07a.nn -rw-r--r-- root/root 2438 2009-05-20 06:13 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14:42 ./usr/share/doc/melting/examples/TEST/ -rw-r--r-- root/root 45968 2009-04-03 02:16 ./usr/share/doc/melting/examples/TEST/MeltingTest.ods.gz -rw-r--r-- root/root 3411 2009-06-01 02:32 ./usr/share/doc/melting/README -rw-r--r-- root/root 639 2009-11-20 06:09 ./usr/share/doc/melting/README.Debian -rw-r--r-- root/root 38296 2009-06-01 02:15 ./usr/share/doc/melting/melting.html drwxr-xr-x root/root 0 2012-07-26 14:42 ./usr/bin/ -rwxr-xr-x root/root 42800 2012-07-26 14:42 ./usr/bin/melting ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libasprintf0c2* libcroco3* libffi5* libgettextpo0* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-melting-dummy* 0 upgraded, 0 newly installed, 22 to remove and 2 not upgraded. After this operation, 24.4 MB disk space will be freed. (Reading database ... 12089 files and directories currently installed.) Removing sbuild-build-depends-melting-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libasprintf0c2:armhf ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libgettextpo0:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 5716 Build-Time: 52 Distribution: wheezy-staging Host Architecture: armhf Install-Time: 62 Job: melting_4.3c-2 Machine Architecture: armhf Package: melting Package-Time: 134 Source-Version: 4.3c-2 Space: 5716 Status: successful Version: 4.3c-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120726-1442 Build needed 00:02:14, 5716k disc space