Search
Search patterns
Mark species with matches
Marks all species which match one of the current search patterns.
Does not unmark rest on species.
Last/Next
Jumps to the last/next occurrence of any of the given patterns.
You can repeat your last search by pressing CTRL-S.
Show ?
Open folded?
If checked, the Last/Next-Button will open folded groups,
to jump to the next occurrence. Otherwise search will jump
over folded groups.
Auto jump?
If checked, the cursor will automatically jump to the
nearest occurrence, if you change the search pattern or
other search parameters.
Ignore gaps in sequence?
If checked, gaps in sequence will be ignored.
(ACGU will find A-CG-U, AC---GU, ...)
Ignore gaps in pattern?
If checked, gaps in the search pattern will be ignored.
(A-CG-U, AC---GU, ... will find ACGU)
Treat T and U as match?
If checked, T and U will be treated as equal.
(ACGU will find ACGT and vice versa)
Ignore case?
If checked, a and A, c and C, ... are treated as
equal (aCGu will find ACGU, AcgU, acgu, ...)
Search for complement?
If checked, search will go as well for complemented
patterns.
Search for reverse?
If checked, search will go as well for reversed patterns.
Exact!
Allowed mismatches
Defines the minimum and maximum allowed number of
non-matching base characters.
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