(press Probe-Parameter help to get detailed information )
Select a PT_SERVER:
Probe design is not run on your database but on the pt_server's
(see 'PT_SERVER What Why and How').
To work on a consistent database you should
-
re-build the pt_server or
-
run arb on the same database as used
by the pt_server ($ARBHOME/lib/pts/*.arb)
Length of output:
Clip too long output lists
Max. non group hits:
Maximum number of species, that
are not marked but matches a probe
Max. hairpin bonds:
Currently not implemented.
Min. group hits:
Minimum percentage of marked species to match a probe.
ECOLI-position:
Restricts the target position.
This requires:
-
Your (pt_server) data is aligned.
-
There is a SAI named 'ECOLI' which
includes the reference sequence.
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