By checking the 'Save settings' toggle, the used values
for the start position and the translation table
are written into the corresponding fields ('codon_start' and 'transl_table')
of every "translated species".
That happens in Manual and Automatic mode.
By checking the 'Translate all data' button, the translation insert a 'X'
in front of the generated amino acid sequence, if you select starting
position 2 or 3 and if there are nucleotides in front of that starting
position.
Later automatic realignments would fail if that 'X' is missing!
|