The following fields have a special meaning in ARB:
name unique name for the gene/annotation
(should be max. 8 characters long; generated by ARB)
type type of gene
(e.g. 'gene', 'CDS', 'tRNA', 'misc_feature', ...)
pos_start start position(s) of gene; range is 1..genomeLength
pos_stop stop position(s) of gene; range is 1..genomeLength
pos_complement 1 -> gene is located on other strand
pos_certain contains information about the certainty of start and
stop position(s):
pos_joined contains the number of parts a joined gene consist of.
ARB_display_hidden gene will not be displayed
(and is not found by default with search tool)
Use the Hide-menu in ARB_GENEMAP to modify the hidden-status.
Note: the importer automatically hides all genes with type 'gene', if
another entry with different type exists at the same location.
ARB_is_gene shortname of gene (with type 'gene')
at same location
During import ARB removes all 'translation' qualifiers from the feature
table, if it can reproduce them.
ARB_translation if 'translation' was NOT reproducible, this
contains the result of the translation. In
this case the 'translation' has not been removed by ARB.
ARB_translation_note additional information about reproduction
ARB_translation_rm 1 -> ARB has reproduced+removed the translation
Fields relevant for DNA->AminoAcid encoding:
codon_start contains the base inside the gene at which the
first codon starts (valid: 1,2,3)
if this entry is missing 1 is assumed
transl_table the number of the translation table to be used
(1 = Standard, ...). Same table numbers as used by EMBL.
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