In this release, 'ARB Parsimony' cannot be used to reconstruct
new trees.
Existing trees can be optimized at different levels (depths)
according to maximum parsimony criteria.
New sequences (species) can be placed rapidly into an existing
tree. This can be done without changing that tree or allowing
optimization at different levels according to maximum parsimony
criteria including the new information for calculation.
Filters for the in- or exclusion of alignment columns
('ARB_NT/SAI; ARB_NT/Tree/Dist Matrix) can be selected.
After selecting one of the parsimony items in 'Tree/Add species to existing tree'
the 'SET PARSIMONY OPTIONS' window appears:
-
Select the tree (to be modified) from the 'Tree:' subwindow.
-
Select an 'alignment' (see ´Glossary´) from the
'alignment:' subwindow.
-
To select a filter display the 'Select Filter' window pressing
the button after the 'Filter:' prompt (see ´Select Filter´).
-
Press the <GO> button to display the 'ARB_PARSIMONY' window.
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