Google
More docs on the ARB website.
See also index of helppages.
Last update on 04. Dec 2013 .
Main topics:
Related topics:

Check the Quality of Sequences

OCCURRENCE

ARB_NT

 

DESCRIPTION

Takes sequences, a tree and a column statistic as input, and generates a short sequence quality output string, which will be stored into the database under a user defined key.

First the sequences are split into different subsequences:

2 pieces:                 front and back half
5 equally sized pieces:   user defined sized pieces.

The programs sums up the weighted mutations for each sequence part using a maximum likelihood technique.

 

NOTES

this feature is still under construction. Only sequences which are in the tree are used.

 

WARNINGS

Needs a really lot of computer memory!

 

BUGS

Does not delete the destination field of species not in the tree.