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Last update on 04. Dec 2013 .
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Add Marked Species and Local Optimization

OCCURRENCE

ARB_NT/Tree/Parsimony/Tree/Add Marked Species + NNI

 

DESCRIPTION

All 'marked species' (see ´Glossary´) are positioned according to maximum parsimony criteria. Local optimization of the current tree is performed by swapping subtrees which are separated by not more than one edge.

 

NOTES

The current parsimony value (number of base changes needed) is displayed after the 'Current Par' prompt in the upper part of the 'ARB_PARSIMONY' window and the 'Message' window (pops up while calculating).

 

EXAMPLES

None

 

WARNINGS

No global optimization is performed

 

BUGS

No bugs known