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Last update on 04. Dec 2013 .
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Search Character String

OCCURRENCE

ARB_NT/ARB_EDIT/EDIT/Search

 

DESCRIPTION

Searches for character strings within the selected sequence or SAI entry.

Select a sequence by positioning the cursor on the name and pressing the left mouse button. Position the cursor within the SAI or sequence entry.

Choose the 'Search' item from the 'ARB_EDIT/EDIT' menu to display the 'EDIT SEARCH' window.

Type the search string to the 'SEARCH-String' subwindow.

Define number of accepted mismatches in the 'Maximum mismatches' subwindow.

Define whether lower and upper case symbols or T and U should be treated as matches or mismatches by pressing the 'Case' or 'T=U?' buttons, respectively.

Define whether gap symbols should be taken into account comparing search string and edited sequences by pressing the 'Consider Gaps' button.

Press one of the 'FIND ...' buttons to execute the search.

The cursor is positioned to the left of the detected string.

 

NOTES

Gaps within the aligned sequences should only be considered if the gap symbols are contained in the search string.

 

EXAMPLES

None

 

WARNINGS

None

 

BUGS

No bugs known