With the help of concatenation function, one can concatenate the aligned
sequences, which are contained in the same species preserving the ALIGNMENT.
Before using concatenation function make sure that the species contains more
than two aligned or unaligned sequences.
Specify new name for the newly created concatenated alignment in the field
"New Alignment Name" (Make sure that the new alignment name starts with
"ali_.....").
Use "Sequence Type" button to load the desired type of alignments/sequences
from the database.
Use Arrow buttons (located in between the lists) to select or remove the
alignments into/from the "Alignments to be concatenated" list.
You can also rearrange the order of concatenation of alignments by using "up"
and "down" arrow keys (located by the side of "Alignments to be concatenated"
list) before performing actual concatenation.
Pressing CLEAR LIST button clears the alignments list selected for
concatenation.
Use "Alignment Separator" to specify the tag/separator between the alignments
to be concatenated.
Pressing CONCATENATE button performs concatenation function for the alignments
selected in the order of the alignments present in the "Alignments to be
concatenated" list.
Use MERGE SIMILAR SPECIES button to create new species by merging similar
species (for e.g., Similar species having different sequence alignments).
Additionally, you can do the same from the "Species" menu clicking on "Merge
Similar Species" item.
If the database contains similar species with different sequence alignments
use "MERGE and CONCATENATE" button to generate new species by merging similar
species in the database and concatenating the different sequence alignments
contained in the newly merged species.
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