This function can be used to Visualize Sequence Associated Information (SAI)
in the Primary Structure and Secondary Structure Editor windows.
Steps to use VISUALIZATION of SAIs in Primary Structure Editor:
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Select SAI to be visualized from the SAI list (all SAIs present in the
ARB Database).
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Select the Color Translation Table (CTT) in the CTT list, if found. Or
create one by pressing CREATE button. You can also copy the existing CTT
and modify.
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Once CTT is created, define desired colors (RANGE 0 to RANGE 9) for the
respective characters in the selected SAI to paint as background of the
sequence.
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You can also change the COLOR RANGE by going to PROPERTIES->CHANGE
COLORS AND FONTS menu.
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Then, choose the visualization options. You can opt to visualize only
MARKED species or ALL species in the primary editor.
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Finally, be sure to check ENABLE VISUALIZATION check box.
If Color Translation Tables were defined for each existing/displayed SAIs in
the Primary Editor, one can navigate through different SAIs in the editor and
visualize the same instantly. To enable this feature, AUTOSELECT SAI should be
enabled in Visualize SAI window (VIEW->VISUALIZE SAIs menu).
Sequence Associated Information can also be visualized in Secondary Structure
Editor.
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To Visualize SAI in Secondary Structure editor window - Go to PROPERTIES
menu, click on CHANGE DISPLAY sub-menu and select the 'Visualize SAI' check
box.
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You can also change the colors used to display SAIs by going to
PROPERTIES->CHANGE COLORS AND FONTS menu in the Secondary Editor Window.
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