ALIGNMENT
Subdatabase containing homologous sequences (different
'alignments' can be stored along with the species information).
See ´What is an Alignment ?´ for more information.
ACI
ARB Command Interpreter. ACI is a simple programing language
for calculating special species information (eg. G+C Content..)
See ´ARB Command Interpreter (ACI)´.
EDGE
Branch within a tree defined by nodes
FIELD
Container for 'species' associated information
MARKED SPECIES
Marking of 'species' defines the datasubset which is analyzed
by the ARB tools.
See ´What are Marked Species ?´.
NAMES
There are two kinds of name fields (for species, genes, etc.).
-
name Identifier for 'species' entries.
Should be generated automatically using
the name server.
-
full_name User defined full name of the species,...
NDS
Node Display Setup: defines information which is displayed at
tree nodes.
NODE
Internal: connects branches of a tree
Terminal: free end of branches representing 'species'
PT_SERVER
Server using a special form of the ARB database for rapid
similarity searching (automated alignment, probe design/check)
SAI
Sequence Associated Information
SELECTED SPECIES
'species' highlighted (selected) using the 'ARB_NT/Species/
Search' or 'ARB_INTRO <MERGE TWO ARB DATABASES> tools.
SPECIES
Database entry containing a sequence and associated information.
Not necessarily consistent with a taxonomic species
SRT
Search and Replace Tool allows to search substrings in a string
and replace them by another substring.
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