ANGLE MODE
ARB Command Interpreter (ACI)
ARB Manuals
ARB PARSIMONY INTRO ( Filter Weights )
ARB Parsimony
ARB WWW Queries
ARB change log
ARB environment variables
ARB: Basic ARB-Shell Commands
ARB: Database
ARB: a Short Introduction
ARB_EDIT4 - Sequence primary and secondary structure editor
ARB_EDIT4 Block Operation
ARB_EDIT4 F.A.Q.
ARB_EDIT4 Options
ARB_EDIT4 Replace
ARB_GENEMAP - Gene map editor
ARB_GENEMAP modes
ARB_HELP_SEARCH
ARB_NT Main Window
ARB_NTREE keyboard reference
ARB_PHYLO - Create filters by base frequency
ARB_SECEDIT - Secondary structure editor
ARB_SECEDIT main window
ARB_SECEDIT modes
ARB_SECEDIT shortcut keys
Add Marked Species
Add Marked Species and Local Optimization
Add Selected Species
Add Selected Species and Local Optimization
Add marked partial species
Align Sequence
Align a Sequence into an Existing Alignment
Alignment Administration
Bootstrap/Branchlength transfer
CONCATENATION of ALIGNMENTS / SEQUENCES
Calculate Branch Lengths
Calculate sequence quality
Calculate the Percentage of the Most Frequent Base
Change Colors Of Sequences
Check Genius List
Check and Update Names
Check and modify the consistency of two alignments
Check the Quality of Sequences
Color properties
Colorize listed species
Colorizing marked items / Marking colored items
Column Statistic (Prototype)
Column statistic
Compare and Transfer Species Entries
Complement Reverse
Configure color groups
Consensus
Consensus Parameters
Consensus definition
Convert Species to SAI
Convert fields
Copy Sequence
Copy Species/Gene
Copyrights
Count Marked Species
Create Names
Create SAI from protein secondary structure
Create Sequence
Create Species/Gene
Create a Field
Create a new input mask
Customize Keyboard
DELETE LISTED SPECIES/GENES
Define Helix Symbols
Define fields exported with gene species
Delete Fields
Delete Marked Species
Delete Species/Gene
Delete Valid Names form Database
Display options for the Residues / Bases
Dot potentially missing bases
E. coli Reference
Estimate Parameters from Column Statistics
Estimation of Bootstrap by Parsimony
Export & import secondary structure
Export Column statistics to GnuPlot
Export File Formats
Export Filter to ARB
Export NDS List
Export Selected Species and Sequences
External tools used by ARB (doc)
Extract genes to gene-species
FORMAT ALIGNMENTS
Frame Properties
Frequently Asked Questions
GDE Extended Menu
GDE Interface and Editor
GENE INFORMATION
GROUP MODE
General Display Options
General options for ARB_GENE_MAP
Generate new names
Get the differences between two sequences of different databases
Global Optimization
Glossary
Graph Aligner
Group All
Group All Except Marked
Group all but color group
Helix
Help on configurations
Hiding genes
How is the consensus calculated?
How to define new import formats
How to fix an 'exec' problem ?
How to get an initial tree
How to save properties
How to start ARB_EDIT4
IMPORTANT bootstrap notes
INFO MODE
Import Foreign Data(bases)
Import Valid Names from File
Insert / Delete Column
Island Hopper
Join species
Justify branchlengths
K.L. Optimization of the Tree
Keep Marked
LENGTH MODE
LINE MODE
LOGICAL ZOOM MODE
Line Spacing
Load a Tree
MARK LISTED SPECIES/GENES
MARK MODE
MODES
MODIFY FIELDS OF LISTED SPECIES/GENES
MOVE MODE
Macros
Mapping Secondary Structural Information
Mark Species in Tree
Mark all Species
Mark color groups
Mark genes
Mark long branches
Marking Gene-species
Marking Organisms
Matrices, Masks, Profiles V1.0
Merge Similar Species
Merge two Databases
Move node info
Multiprobe Calculation
Multiprobe parameters for calculation
Multiproberesults
NAME_SERVER ADMIN
NOTES: ae2
NOTES: dewachter
NOTES: dssp
NOTES: ebi
NOTES: fasta
NOTES: gde
NOTES: gde_flat
NOTES: rdp
NOTES: universal dna
Nearest Neighbour Interchange
Nearest Neighbour Interchange and K.L. Optimization
Nearest relative search
Nearest relatives of LISTED
Nearest relatives of SELECTED
Neighbour joining
Node Display Setup (NDS)
Old Sequence Editor
Open, Merge, Create ARB Databases
Optimize Database
PT_SERVER Administration
PT_SERVER: What Why and How
Partial sequences
Potential Probe Targets
Predefined SRT/ACI
Primer Design
Primer Design/IUPAC codes
Primer Design/Search Parameters
Print Ascii Files to Postscript Printer
Print a Graphic to a Printer
Print to File
Printing from Editor
Probe Design
Probe Match
Probe Parameters
Protection Level
Protein Alignments
Protein Match Settings
Protein Viewer
Quit
RAxML
RESET MODE
ROTATE MODE
Realign DNA
Register Yourself / Bug Report
Regular Expressions (REG)
Remove Marked
Remove Zombies
Remove bootstrap values
Rename Species/Gene
Reorder Fields
Replace Character String
Reset Logical Zoom
Reset Physical Zoom
Reset branchlengths
SAI Administration
SAI Sequence Associated Information
SECEDIT Display settings
SELECT A TREE
SELECT MODE
SET ROOT MODE
SHOW DENDROGRAM
SHOW IRS DENDROGRAM
SHOW RADIAL TREE
SPECIES INFORMATION
SWAP MODE
Save As
Save Database
Save Defaults
Save matrix to file
Scale branchlengths
Scan Database for all Fields
Search
Search & Logical Zoom
Search Character String
Search Database for Genes
Search Database for Species
Search List of Valid Names Manually
Search and Replace Tool (SRT)
Search entries existing in both databases
Search for equal fields
Searching
Select Filter
Select an Alignment
Select species
Select species to use for alignment adaption
Selected Species and Cursor Position
Selected gene
Selections of Species (Configurations)
Set Protection Level of Field of Listed Species
Set protection level
Setup of Editing Area
Show all Fields
Show list of species
Sort Species According Database Entries
Sort Species According to Phylogeny
Sort Tree Topology
Store Tree Topologies
Suggest Valid Names
Superimposing rRNA sequence data, SAI and probes
Swap Marked and Unmarked Species
Synchronize Cursor
TAGS: Subfields
TREE ADMINISTRATION
The integrated aligners
Track alignment changes
Transfer Configurations
Transfer SAI Entries
Transfer Trees
Transfer one field of selected species
Translate DNA to Protein
Transversion analysis
Tree Display
Tree Settings
Trees
UNMARK LISTED SPECIES/GENES
Undo/Redo
Ungroup All
Unmark Species in Tree
Unmark all Species
User Defined Distance Matrix
User mask syntax description
User masks
Using embedded help
Version Info
Visualization of Sequence Associated Information (SAI) in Primary and Secondary Editors.
Visualization of Sequence Associated Information (SAI) of Probe Match Results.
Visualization of Three-dimensional structure of small subunit (16S) rRNA
WRITE TO FIELDS OF LISTED SPECIES/GENES
WWW MODE
Weighting of Base Pairings
What are Gene-species?
What are Genes ?
What are Marked Genes ?
What are Marked Species ?
What are Organisms?
What are Species ?
What are color groups?
What is an Alignment ?
Write to File
Write to Submission Forms
Write to fields of listed species
ZOOM MODE