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Last update on 04. Dec 2013 .
Main topics:
Related topics:

Nearest Neighbour Interchange and K.L. Optimization

OCCURRENCE

ARB_NT/Tree/Parsimony/<NNI + K.L.>

 

DESCRIPTION

Searches for a better (more parsimonious) tree by performing alternating cycles of 'Nearest Neighbour Interchange' and 'K.L.' optimizations.

 

NOTES

The current parsimony value (number of base changes needed) is displayed after the 'Current Par' prompt in the upper part of the 'ARB_PARSIMONY' window and the 'Message' window (pops up while calculating).

 

EXAMPLES

None

 

WARNINGS

None

 

BUGS

No bugs known