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itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference

#include <itkKNNGraphAlphaMutualInformationImageToImageMetric.h>

Inheritance diagram for itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:
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Collaboration diagram for itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:
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Public Types

typedef ANNbdTree< ListSampleTypeANNbdTreeType
 
typedef ANNBruteForceTree
< ListSampleType
ANNBruteForceTreeType
 
typedef
ANNFixedRadiusTreeSearch
< ListSampleType
ANNFixedRadiusTreeSearchType
 
typedef ANNkDTree< ListSampleTypeANNkDTreeType
 
typedef ANNPriorityTreeSearch
< ListSampleType
ANNPriorityTreeSearchType
 
typedef ANNStandardTreeSearch
< ListSampleType
ANNStandardTreeSearchType
 
typedef BinaryKNNTreeType::Pointer BinaryKNNTreePointer
 
typedef
BinaryKNNTreeSearchType::Pointer 
BinaryKNNTreeSearchPointer
 
typedef BinaryTreeSearchBase
< ListSampleType
BinaryKNNTreeSearchType
 
typedef BinaryTreeBase
< ListSampleType
BinaryKNNTreeType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef
BinaryKNNTreeSearchType::DistanceArrayType 
DistanceArrayType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageInterpolatorVectorType 
FixedImageInterpolatorVectorType
 
typedef
Superclass::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImageMaskVectorType 
FixedImageMaskVectorType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef
Superclass::FixedImageRegionVectorType 
FixedImageRegionVectorType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::FixedImageVectorType 
FixedImageVectorType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass::ImageSamplerType 
ImageSamplerType
 
typedef
BinaryKNNTreeSearchType::IndexArrayType 
IndexArrayType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef
Superclass::InterpolatorVectorType 
InterpolatorVectorType
 
typedef ListSampleType::Pointer ListSamplePointer
 
typedef
Statistics::ListSampleCArray
< MeasurementVectorType,
double
ListSampleType
 
typedef Array< doubleMeasurementVectorType
 
typedef
MeasurementVectorType::ValueType 
MeasurementVectorValueType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImageMaskVectorType 
MovingImageMaskVectorType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImageRegionType 
MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef
Superclass::MovingImageVectorType 
MovingImageVectorType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef
KNNGraphAlphaMutualInformationImageToImageMetric 
Self
 
typedef
MultiInputImageToImageMetricBase
< TFixedImage, TMovingImage > 
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
TransformJacobianType::ValueType 
TransformJacobianValueType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
FixedImageInterpolatorType::Pointer 
FixedImageInterpolatorPointer
 
typedef
InterpolateImageFunction
< FixedImageType,
CoordinateRepresentationType
FixedImageInterpolatorType
 
typedef std::vector
< FixedImageInterpolatorPointer
FixedImageInterpolatorVectorType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef std::vector
< FixedImageMaskPointer
FixedImageMaskVectorType
 
typedef
Superclass::FixedImagePointer 
FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef std::vector
< FixedImageRegionType
FixedImageRegionVectorType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef std::vector
< FixedImageConstPointer
FixedImageVectorType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef std::vector
< InterpolatorPointer
InterpolatorVectorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef std::vector
< MovingImageMaskPointer
MovingImageMaskVectorType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImagePointer 
MovingImagePointer
 
typedef Superclass::MovingImageType MovingImageType
 
typedef std::vector
< MovingImageConstPointer
MovingImageVectorType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef
MultiInputImageToImageMetricBase 
Self
 
typedef
AdvancedImageToImageMetric
< TFixedImage, TMovingImage > 
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
 
typedef
AdvancedBSplineDeformableTransform
< ScalarType,
FixedImageDimension, 1 > 
BSplineOrder1TransformType
 
typedef
AdvancedBSplineDeformableTransform
< ScalarType,
FixedImageDimension, 2 > 
BSplineOrder2TransformType
 
typedef
AdvancedBSplineDeformableTransform
< ScalarType,
FixedImageDimension, 3 > 
BSplineOrder3TransformType
 
typedef
AdvancedCombinationTransform
< ScalarType,
FixedImageDimension > 
CombinationTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
 
typedef
FixedImageLimiterType::Pointer 
FixedImageLimiterPointer
 
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef FixedImageType::PixelType FixedImagePixelType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef vnl_sparse_matrix
< HessianValueType
HessianType
 
typedef DerivativeType::ValueType HessianValueType
 
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
 
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
 
typedef ImageSamplerType::Pointer ImageSamplerPointer
 
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef FixedArray< double,
Self::MovingImageDimension > 
MovingImageDerivativeScalesType
 
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
 
typedef
MovingImageLimiterType::Pointer 
MovingImageLimiterPointer
 
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef MovingImageType::RegionType MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef
AdvancedTransformType::NumberOfParametersType 
NumberOfParametersType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef TransformType::ScalarType ScalarType
 
typedef AdvancedImageToImageMetric Self
 
typedef ImageToImageMetric
< TFixedImage, TMovingImage > 
Superclass
 
typedef itk::MultiThreader ThreaderType
 
typedef
ThreaderType::ThreadInfoStruct 
ThreadInfoType
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 

Public Member Functions

virtual const doubleGetAlpha ()
 
virtual const doubleGetAvoidDivisionBy ()
 
virtual const char * GetClassName () const
 
void GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const
 
MeasureType GetValue (const TransformParametersType &parameters) const
 
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
 
virtual void Initialize (void) throw ( ExceptionObject )
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetAlpha (double _arg)
 
void SetANNbdTree (unsigned int bucketSize, std::string splittingRule, std::string shrinkingRule)
 
void SetANNbdTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint, std::string shrinkingRuleFixed, std::string shrinkingRuleMoving, std::string shrinkingRuleJoint)
 
void SetANNBruteForceTree (void)
 
void SetANNFixedRadiusTreeSearch (unsigned int kNearestNeighbors, double errorBound, double squaredRadius)
 
void SetANNkDTree (unsigned int bucketSize, std::string splittingRule)
 
void SetANNkDTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint)
 
void SetANNPriorityTreeSearch (unsigned int kNearestNeighbors, double errorBound)
 
void SetANNStandardTreeSearch (unsigned int kNearestNeighbors, double errorBound)
 
virtual void SetAvoidDivisionBy (double _arg)
 
- Public Member Functions inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
virtual const FixedImageTypeGetFixedImage (unsigned int pos) const
 
virtual const FixedImageTypeGetFixedImage (void) const
 
virtual
FixedImageInterpolatorType
GetFixedImageInterpolator (unsigned int pos) const
 
virtual
FixedImageInterpolatorType
GetFixedImageInterpolator (void) const
 
virtual FixedImageMaskTypeGetFixedImageMask (unsigned int pos) const
 
virtual FixedImageMaskTypeGetFixedImageMask (void) const
 
virtual const
FixedImageRegionType
GetFixedImageRegion (unsigned int pos) const
 
virtual const
FixedImageRegionType
GetFixedImageRegion (void) const
 
virtual InterpolatorTypeGetInterpolator (unsigned int pos) const
 
virtual InterpolatorTypeGetInterpolator (void) const
 
virtual bool GetInterpolatorsAreBSpline () const
 
virtual const MovingImageTypeGetMovingImage (unsigned int pos) const
 
virtual const MovingImageTypeGetMovingImage (void) const
 
virtual MovingImageMaskTypeGetMovingImageMask (unsigned int pos) const
 
virtual MovingImageMaskTypeGetMovingImageMask (void) const
 
virtual unsigned int GetNumberOfFixedImageInterpolators () const
 
virtual unsigned int GetNumberOfFixedImageMasks () const
 
virtual unsigned int GetNumberOfFixedImageRegions () const
 
virtual unsigned int GetNumberOfFixedImages () const
 
virtual unsigned int GetNumberOfInterpolators () const
 
virtual unsigned int GetNumberOfMovingImageMasks () const
 
virtual unsigned int GetNumberOfMovingImages () const
 
 itkSetNumberOfMacro (FixedImage)
 
 itkSetNumberOfMacro (FixedImageMask)
 
 itkSetNumberOfMacro (FixedImageRegion)
 
 itkSetNumberOfMacro (MovingImage)
 
 itkSetNumberOfMacro (MovingImageMask)
 
 itkSetNumberOfMacro (Interpolator)
 
 itkSetNumberOfMacro (FixedImageInterpolator)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 
virtual void SetFixedImage (const FixedImageType *_arg, unsigned int pos)
 
virtual void SetFixedImage (const FixedImageType *_arg)
 
virtual void SetFixedImageInterpolator (FixedImageInterpolatorType *_arg, unsigned int pos)
 
virtual void SetFixedImageInterpolator (FixedImageInterpolatorType *_arg)
 
virtual void SetFixedImageMask (FixedImageMaskType *_arg, unsigned int pos)
 
virtual void SetFixedImageMask (FixedImageMaskType *_arg)
 
virtual void SetFixedImageRegion (const FixedImageRegionType _arg, unsigned int pos)
 
virtual void SetFixedImageRegion (const FixedImageRegionType _arg)
 
virtual void SetInterpolator (InterpolatorType *_arg, unsigned int pos)
 
virtual void SetInterpolator (InterpolatorType *_arg)
 
virtual void SetMovingImage (const MovingImageType *_arg, unsigned int pos)
 
virtual void SetMovingImage (const MovingImageType *_arg)
 
virtual void SetMovingImageMask (MovingImageMaskType *_arg, unsigned int pos)
 
virtual void SetMovingImageMask (MovingImageMaskType *_arg)
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler (void) const
 
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
 
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
const AdvancedTransformTypeGetTransform (void) const
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual const boolGetUseMetricSingleThreaded ()
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
virtual const boolGetUseMultiThread ()
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetNumberOfThreads (ThreadIdType numberOfThreads)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
virtual void SetUseMultiThread (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 
virtual void UseMultiThreadOff ()
 
virtual void UseMultiThreadOn ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

 KNNGraphAlphaMutualInformationImageToImageMetric ()
 
virtual void PrintSelf (std::ostream &os, Indent indent) const
 
virtual ~KNNGraphAlphaMutualInformationImageToImageMetric ()
 
- Protected Member Functions inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
virtual void CheckForBSplineInterpolators (void)
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
 
virtual bool IsInsideMovingMask (const MovingImagePointType &mappedPoint) const
 
 MultiInputImageToImageMetricBase ()
 
virtual ~MultiInputImageToImageMetricBase ()
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
 AdvancedImageToImageMetric ()
 
virtual void AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
 
virtual void CheckForAdvancedTransform (void)
 
virtual void CheckForBSplineInterpolator (void)
 
virtual void CheckForBSplineTransform (void)
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
 
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
 
virtual void InitializeLimiters (void)
 
virtual void InitializeThreadingParameters (void) const
 
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
 
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
 
void LaunchGetValueAndDerivativeThreaderCallback (void) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual void ThreadedGetValueAndDerivative (ThreadIdType threadID)
 
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
 
virtual ~AdvancedImageToImageMetric ()
 

Protected Attributes

double m_Alpha
 
double m_AvoidDivisionBy
 
BinaryKNNTreePointer m_BinaryKNNTreeFixed
 
BinaryKNNTreePointer m_BinaryKNNTreeJoint
 
BinaryKNNTreePointer m_BinaryKNNTreeMoving
 
BinaryKNNTreeSearchPointer m_BinaryKNNTreeSearcherFixed
 
BinaryKNNTreeSearchPointer m_BinaryKNNTreeSearcherJoint
 
BinaryKNNTreeSearchPointer m_BinaryKNNTreeSearcherMoving
 
- Protected Attributes inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
BSplineInterpolatorVectorType m_BSplineInterpolatorVector
 
FixedImageInterpolatorVectorType m_FixedImageInterpolatorVector
 
FixedImageMaskVectorType m_FixedImageMaskVector
 
FixedImageRegionVectorType m_FixedImageRegionVector
 
FixedImageVectorType m_FixedImageVector
 
bool m_InterpolatorsAreBSpline
 
InterpolatorVectorType m_InterpolatorVector
 
MovingImageMaskVectorType m_MovingImageMaskVector
 
MovingImageVectorType m_MovingImageVector
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer m_AdvancedTransform
 
BSplineInterpolatorPointer m_BSplineInterpolator
 
BSplineInterpolatorFloatPointer m_BSplineInterpolatorFloat
 
CentralDifferenceGradientFilterPointer m_CentralDifferenceGradientFilter
 
FixedImageLimiterPointer m_FixedImageLimiter
 
FixedImageLimiterOutputType m_FixedImageMaxLimit
 
FixedImageLimiterOutputType m_FixedImageMinLimit
 
FixedImagePixelType m_FixedImageTrueMax
 
FixedImagePixelType m_FixedImageTrueMin
 
AlignedGetValueAndDerivativePerThreadStruct * m_GetValueAndDerivativePerThreadVariables
 
ThreadIdType m_GetValueAndDerivativePerThreadVariablesSize
 
ImageSamplerPointer m_ImageSampler
 
bool m_InterpolatorIsBSpline
 
bool m_InterpolatorIsBSplineFloat
 
bool m_InterpolatorIsLinear
 
bool m_InterpolatorIsReducedBSpline
 
LinearInterpolatorPointer m_LinearInterpolator
 
MovingImageLimiterPointer m_MovingImageLimiter
 
MovingImageLimiterOutputType m_MovingImageMaxLimit
 
MovingImageLimiterOutputType m_MovingImageMinLimit
 
MovingImagePixelType m_MovingImageTrueMax
 
MovingImagePixelType m_MovingImageTrueMin
 
ReducedBSplineInterpolatorPointer m_ReducedBSplineInterpolator
 
MultiThreaderParameterType m_ThreaderMetricParameters
 
bool m_TransformIsAdvanced
 
bool m_TransformIsBSpline
 
bool m_UseMetricSingleThreaded
 
bool m_UseMultiThread
 
bool m_UseOpenMP
 

Private Types

typedef
Superclass::FixedImagePointType 
FixedImagePointType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
typedef std::vector
< SpatialDerivativeType
SpatialDerivativeContainerType
 
typedef Array2D< doubleSpatialDerivativeType
 
typedef std::vector
< TransformJacobianType
TransformJacobianContainerType
 
typedef std::vector
< NonZeroJacobianIndicesType
TransformJacobianIndicesContainerType
 

Private Member Functions

virtual void ComputeListSampleValuesAndDerivativePlusJacobian (const ListSamplePointer &listSampleFixed, const ListSamplePointer &listSampleMoving, const ListSamplePointer &listSampleJoint, const bool &doDerivative, TransformJacobianContainerType &jacobians, TransformJacobianIndicesContainerType &jacobiansIndices, SpatialDerivativeContainerType &spatialDerivatives) const
 
virtual void EvaluateMovingFeatureImageDerivatives (const MovingImagePointType &mappedPoint, SpatialDerivativeType &featureGradients) const
 
 KNNGraphAlphaMutualInformationImageToImageMetric (const Self &)
 
void operator= (const Self &)
 
virtual void UpdateDerivativeOfGammas (const SpatialDerivativeType &D1sparse, const SpatialDerivativeType &D2sparse_M, const SpatialDerivativeType &D2sparse_J, const NonZeroJacobianIndicesType &D1indices, const NonZeroJacobianIndicesType &D2indices_M, const NonZeroJacobianIndicesType &D2indices_J, const MeasurementVectorType &diff_M, const MeasurementVectorType &diff_J, const MeasureType &distance_M, const MeasureType &distance_J, DerivativeType &dGamma_M, DerivativeType &dGamma_J) const
 

Additional Inherited Members

- Protected Types inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
typedef
BSplineInterpolatorType::Pointer 
BSplineInterpolatorPointer
 
typedef
Superclass::BSplineInterpolatorType 
BSplineInterpolatorType
 
typedef std::vector
< BSplineInterpolatorPointer
BSplineInterpolatorVectorType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageDerivativeType 
MovingImageDerivativeType
 
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef
BSplineInterpolatorFloatType::Pointer 
BSplineInterpolatorFloatPointer
 
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
float
BSplineInterpolatorFloatType
 
typedef
BSplineInterpolatorType::Pointer 
BSplineInterpolatorPointer
 
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
BSplineInterpolatorType
 
typedef
CentralDifferenceGradientFilterType::Pointer 
CentralDifferenceGradientFilterPointer
 
typedef GradientImageFilter
< MovingImageType, RealType,
RealType
CentralDifferenceGradientFilterType
 
typedef FixedImageType::IndexType FixedImageIndexType
 
typedef
FixedImageIndexType::IndexValueType 
FixedImageIndexValueType
 
typedef
TransformType::InputPointType 
FixedImagePointType
 
typedef
LinearInterpolatorType::Pointer 
LinearInterpolatorPointer
 
typedef
AdvancedLinearInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType
LinearInterpolatorType
 
typedef
InterpolatorType::ContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
BSplineInterpolatorType::CovariantVectorType 
MovingImageDerivativeType
 
typedef MovingImageType::IndexType MovingImageIndexType
 
typedef
TransformType::OutputPointType 
MovingImagePointType
 
typedef
AdvancedTransformType::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
ReducedBSplineInterpolatorType::Pointer 
ReducedBSplineInterpolatorPointer
 
typedef
ReducedDimensionBSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
ReducedBSplineInterpolatorType
 
- Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_TYPE AccumulateDerivativesThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_TYPE GetValueAndDerivativeThreaderCallback (void *arg)
 

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Computes similarity between two images to be registered.

This metric computes the alpha-Mutual Information (aMI) between two multi-channeled data sets. Said otherwise, given two sets of features, the aMI between them is calculated. Since for higher dimensional aMI it is infeasible to compute high dimensional joint histograms, here we adopt a framework based on the length of certain graphs, see Neemuchwala. Specifically, we use the k-Nearest Neighbour (kNN) graph, using an implementation provided by the Approximate Nearest Neighbour (ANN) software package.

Note that the feature image are given beforehand, and that values are calculated by interpolation on the transformed point. For some features, it would be better (but slower) to first apply the transform on the image and then recalculate the feature.

All the technical details can be found in:
M. Staring, U.A. van der Heide, S. Klein, M.A. Viergever and J.P.W. Pluim, "Registration of Cervical MRI Using Multifeature Mutual Information," IEEE Transactions on Medical Imaging, vol. 28, no. 9, pp. 1412 - 1421, September 2009.

Definition at line 70 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

Member Typedef Documentation

template<class TFixedImage, class TMovingImage>
typedef ANNbdTree< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNbdTreeType
template<class TFixedImage, class TMovingImage>
typedef ANNBruteForceTree< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNBruteForceTreeType
template<class TFixedImage, class TMovingImage>
typedef ANNFixedRadiusTreeSearch< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNFixedRadiusTreeSearchType
template<class TFixedImage, class TMovingImage>
typedef ANNkDTree< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNkDTreeType
template<class TFixedImage, class TMovingImage>
typedef ANNPriorityTreeSearch< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNPriorityTreeSearchType
template<class TFixedImage, class TMovingImage>
typedef ANNStandardTreeSearch< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNStandardTreeSearchType
template<class TFixedImage, class TMovingImage>
typedef BinaryKNNTreeType::Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreePointer
template<class TFixedImage, class TMovingImage>
typedef BinaryKNNTreeSearchType::Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeSearchPointer
template<class TFixedImage, class TMovingImage>
typedef BinaryTreeSearchBase< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeSearchType

Typedefs for tree searchers.

Definition at line 162 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef BinaryTreeBase< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeType

Typedefs for trees.

Definition at line 155 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef SmartPointer< const Self > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::CoordinateRepresentationType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 87 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef Superclass::DerivativeType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType
template<class TFixedImage, class TMovingImage>
typedef DerivativeType::ValueType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeValueType
template<class TFixedImage, class TMovingImage>
typedef BinaryKNNTreeSearchType::DistanceArrayType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DistanceArrayType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageConstPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageInterpolatorVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageInterpolatorVectorType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageLimiterOutputType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageLimiterType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageMaskPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageMaskType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageMaskVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskVectorType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImagePixelType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImagePointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType
private

Typedef's for the computation of the derivative.

Definition at line 275 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageRegionType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageRegionVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionVectorType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType
template<class TFixedImage, class TMovingImage>
typedef Superclass::FixedImageVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageVectorType

Typedef's for storing multiple inputs.

Definition at line 135 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImageFilterPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImageFilterType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImagePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientImageType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType
template<class TFixedImage, class TMovingImage>
typedef Superclass::GradientPixelType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSampleContainerPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSampleContainerType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSamplerPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::ImageSamplerType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType
template<class TFixedImage, class TMovingImage>
typedef BinaryKNNTreeSearchType::IndexArrayType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::IndexArrayType
template<class TFixedImage, class TMovingImage>
typedef Superclass::InputPointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InputPointType
template<class TFixedImage, class TMovingImage>
typedef Superclass::InterpolatorPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::InterpolatorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType
template<class TFixedImage, class TMovingImage>
typedef Superclass::InterpolatorVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorVectorType
template<class TFixedImage, class TMovingImage>
typedef ListSampleType::Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ListSamplePointer
template<class TFixedImage, class TMovingImage>
typedef Statistics::ListSampleCArray< MeasurementVectorType, double > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ListSampleType
template<class TFixedImage, class TMovingImage>
typedef Array< double > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorType

Typedefs for the samples.

Definition at line 148 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef MeasurementVectorType::ValueType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorValueType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MeasureType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasureType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageConstPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageContinuousIndexType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType
private
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageDerivativeType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType
private
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageLimiterOutputType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageLimiterType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageMaskPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageMaskType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageMaskVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskVectorType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImagePixelType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImagePointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType
private
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageRegionType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType
template<class TFixedImage, class TMovingImage>
typedef Superclass::MovingImageVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageVectorType
template<class TFixedImage, class TMovingImage>
typedef Superclass::NonZeroJacobianIndicesType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType
template<class TFixedImage, class TMovingImage>
typedef Superclass::OutputPointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType
template<class TFixedImage, class TMovingImage>
typedef Superclass::ParametersType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParametersType
template<class TFixedImage, class TMovingImage>
typedef SmartPointer< Self > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Pointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::RealType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::RealType
template<class TFixedImage, class TMovingImage>
typedef KNNGraphAlphaMutualInformationImageToImageMetric itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard itk.

Definition at line 76 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
typedef std::vector< SpatialDerivativeType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SpatialDerivativeContainerType
private
template<class TFixedImage, class TMovingImage>
typedef Array2D< double > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SpatialDerivativeType
private
template<class TFixedImage, class TMovingImage>
typedef MultiInputImageToImageMetricBase< TFixedImage, TMovingImage > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Superclass
template<class TFixedImage, class TMovingImage>
typedef std::vector< TransformJacobianType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianContainerType
private
template<class TFixedImage, class TMovingImage>
typedef std::vector< NonZeroJacobianIndicesType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianIndicesContainerType
private
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformJacobianType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType
template<class TFixedImage, class TMovingImage>
typedef TransformJacobianType::ValueType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianValueType
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformParametersType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer
template<class TFixedImage, class TMovingImage>
typedef Superclass::TransformType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Constructor & Destructor Documentation

template<class TFixedImage, class TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KNNGraphAlphaMutualInformationImageToImageMetric ( )
protected

Constructor.

template<class TFixedImage, class TMovingImage>
virtual itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::~KNNGraphAlphaMutualInformationImageToImageMetric ( )
inlineprotectedvirtual

Destructor.

Definition at line 252 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KNNGraphAlphaMutualInformationImageToImageMetric ( const Self )
private

Member Function Documentation

template<class TFixedImage, class TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeListSampleValuesAndDerivativePlusJacobian ( const ListSamplePointer listSampleFixed,
const ListSamplePointer listSampleMoving,
const ListSamplePointer listSampleJoint,
const bool doDerivative,
TransformJacobianContainerType jacobians,
TransformJacobianIndicesContainerType jacobiansIndices,
SpatialDerivativeContainerType spatialDerivatives 
) const
privatevirtual

This function takes the fixed image samples from the ImageSampler and puts them in the listSampleFixed, together with the fixed feature image samples. Also the corresponding moving image values and moving feature values are computed and put into listSampleMoving. The concatenation is put into listSampleJoint. If desired, i.e. if doDerivative is true, then also things needed to compute the derivative of the cost function to the transform parameters are computed:

  • The sparse Jacobian of the transformation (dT/dmu).
  • The spatial derivatives of the moving (feature) images (dm/dx).
template<class TFixedImage, class TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMovingFeatureImageDerivatives ( const MovingImagePointType mappedPoint,
SpatialDerivativeType featureGradients 
) const
privatevirtual

This function calculates the spatial derivative of the featureNr feature image at the point mappedPoint.

Todo:
move this to base class.
template<class TFixedImage, class TMovingImage>
virtual const double& itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetAlpha ( )
virtual

Get alpha from alpha - mutual information.

template<class TFixedImage, class TMovingImage>
virtual const double& itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetAvoidDivisionBy ( )
virtual

Avoid division by a small number.

template<class TFixedImage, class TMovingImage>
virtual const char* itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >.

Reimplemented in elastix::KNNGraphAlphaMutualInformationMetric< TElastix >.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative ( const TransformParametersType parameters,
DerivativeType Derivative 
) const

Get the derivatives of the match measure.

template<class TFixedImage, class TMovingImage>
MeasureType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType parameters) const

Get the value for single valued optimizers.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative ( const TransformParametersType parameters,
MeasureType Value,
DerivativeType Derivative 
) const

Get value and derivatives for multiple valued optimizers.

template<class TFixedImage, class TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( void  )
throw (ExceptionObject
)
virtual

*** Standard metric stuff: ***Initialize the metric.

Reimplemented from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >.

Reimplemented in elastix::KNNGraphAlphaMutualInformationMetric< TElastix >.

template<class TFixedImage, class TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TFixedImage, class TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)
template<class TFixedImage, class TMovingImage>
static Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::New ( )
static

Method for creation through the object factory.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::operator= ( const Self )
private
template<class TFixedImage, class TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

PrintSelf.

template<class TFixedImage, class TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetAlpha ( double  _arg)
virtual

Set alpha from alpha - mutual information.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNbdTree ( unsigned int  bucketSize,
std::string  splittingRule,
std::string  shrinkingRule 
)

Set ANNbdTree.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNbdTree ( unsigned int  bucketSize,
std::string  splittingRuleFixed,
std::string  splittingRuleMoving,
std::string  splittingRuleJoint,
std::string  shrinkingRuleFixed,
std::string  shrinkingRuleMoving,
std::string  shrinkingRuleJoint 
)

Set ANNbdTree.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNBruteForceTree ( void  )
template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNFixedRadiusTreeSearch ( unsigned int  kNearestNeighbors,
double  errorBound,
double  squaredRadius 
)
template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNkDTree ( unsigned int  bucketSize,
std::string  splittingRule 
)

*** Set trees: *** Currently kd, bd, and brute force trees are supported.Set ANNkDTree.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNkDTree ( unsigned int  bucketSize,
std::string  splittingRuleFixed,
std::string  splittingRuleMoving,
std::string  splittingRuleJoint 
)

Set ANNkDTree.

template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNPriorityTreeSearch ( unsigned int  kNearestNeighbors,
double  errorBound 
)
template<class TFixedImage, class TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNStandardTreeSearch ( unsigned int  kNearestNeighbors,
double  errorBound 
)

*** Set tree searchers: *** Currently standard, fixed radius, and priority tree searchers are supported.Set ANNStandardTreeSearch.

template<class TFixedImage, class TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetAvoidDivisionBy ( double  _arg)
virtual

Avoid division by a small number.

template<class TFixedImage, class TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::UpdateDerivativeOfGammas ( const SpatialDerivativeType D1sparse,
const SpatialDerivativeType D2sparse_M,
const SpatialDerivativeType D2sparse_J,
const NonZeroJacobianIndicesType D1indices,
const NonZeroJacobianIndicesType D2indices_M,
const NonZeroJacobianIndicesType D2indices_J,
const MeasurementVectorType diff_M,
const MeasurementVectorType diff_J,
const MeasureType distance_M,
const MeasureType distance_J,
DerivativeType dGamma_M,
DerivativeType dGamma_J 
) const
privatevirtual

This function essentially computes D1 - D2, but also takes care of going from a sparse matrix (hence the indices) to a full sized matrix.

Field Documentation

template<class TFixedImage, class TMovingImage>
double itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_Alpha
protected
template<class TFixedImage, class TMovingImage>
double itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_AvoidDivisionBy
protected
template<class TFixedImage, class TMovingImage>
BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeFixed
protected

Member variables.

Definition at line 258 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>
BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeJoint
protected
template<class TFixedImage, class TMovingImage>
BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeMoving
protected
template<class TFixedImage, class TMovingImage>
BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherFixed
protected
template<class TFixedImage, class TMovingImage>
BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherJoint
protected
template<class TFixedImage, class TMovingImage>
BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherMoving
protected


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