30 using namespace pwiz::util;
31 using namespace pwiz::peptideid;
32 using namespace pwiz::minimxml::SAXParser;
37 "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
38 "<msms_pipeline_analysis>\n"
39 "<msms_run_summary>\n"
40 "<spectrum_query start_scan=\"1\" end_scan=\"1\" retention_time_sec=\"1.0\">\n"
42 "<search_hit peptide=\"ABC\">\n"
43 "<analysis_result analysis=\"peptideprophet\">\n"
44 "<peptideprophet_result probability=\"0.900\">\n"
45 "<search_score_summary>\n"
46 "</search_score_summary>\n"
47 "</peptideprophet_result>\n"
48 "</analysis_result>\n"
52 "</msms_run_summary>\n"
53 "</msms_pipeline_analysis>\n";
71 ifstream xml (
"test.pep.xml");
84 int main(
int argc,
char* argv[])
90 if (argc>1 && !strcmp(argv[1],
"-v"))
os_ = &cout;
int main(int argc, char *argv[])
#define unit_assert_equal(x, y, epsilon)
This class allows access to identified proteins in PeptideProphet files.
virtual Record record(const Location &location) const
Returns the Record object associated with the given nativeID.
const char * samplePepXML
#define TEST_PROLOG(argc, argv)