Base classes for Anatomy atlases support
- major optimization. Now code is sloppy and slow – plenty of checks etc
mvpa2.atlases.base module contains support for various atlases
group Base: | BaseAtlas XMLBasedAtlas Label Level LabelsLevel |
---|---|
group Talairach: | |
PyMVPAAtlas LabelsAtlas ReferencesAtlas | |
group Exceptions: | |
XMLAtlasException |
Functions
check_range(coord, range) | Check if coordinates are within range (0,0,0) - (range) |
enhanced_doc_string(item, *args, **kwargs) | Generate enhanced doc strings for various items. |
norm(x[, ord]) | Matrix or vector norm. |
reuse_absolute_path(file1, file2[, force]) | Use path to file1 as the path to file2 is no absolute |
Classes
BaseAtlas | Base class for the atlases. |
Label(text[, abbr, coord, count, index]) | Represents a label. |
LabelsAtlas(*args, **kwargs) | Atlas which provides labels for the given coordinate |
LabelsLevel(description[, index, labels]) | Level of labels. |
Level(description) | Represents a level. |
Linear((transf=array([[ 1., 0., 0., ...) | Simple linear transformation defined by a matrix |
PyMVPAAtlas(*args, **kwargs) | Base class for PyMVPA atlases, such as LabelsAtlas and ReferenceAtlas |
ReferencesAtlas([distance, reference_level]) | Atlas which provides references to the other atlases. |
ReferencesLevel(description[, indexes]) | Level which carries reference points |
SpaceTransformation([voxelSize, origin, ...]) | To perform transformation from Voxel into Real Space. |
XMLBasedAtlas([filename, resolution, ...]) | Base class for atlases using XML as the definition backend |
Exceptions
BaseAtlas | Base class for the atlases. |
Label(text[, abbr, coord, count, index]) | Represents a label. |
LabelsAtlas(*args, **kwargs) | Atlas which provides labels for the given coordinate |
LabelsLevel(description[, index, labels]) | Level of labels. |
Level(description) | Represents a level. |
Linear((transf=array([[ 1., 0., 0., ...) | Simple linear transformation defined by a matrix |
PyMVPAAtlas(*args, **kwargs) | Base class for PyMVPA atlases, such as LabelsAtlas and ReferenceAtlas |
ReferencesAtlas([distance, reference_level]) | Atlas which provides references to the other atlases. |
ReferencesLevel(description[, indexes]) | Level which carries reference points |
SpaceTransformation([voxelSize, origin, ...]) | To perform transformation from Voxel into Real Space. |
XMLBasedAtlas([filename, resolution, ...]) | Base class for atlases using XML as the definition backend |