sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build07.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ rmatrix 1.0-6-1 (armhf) 14 Aug 2012 11:17 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: rmatrix Version: 1.0-6-1 Source Version: 1.0-6-1 Distribution: wheezy-staging Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf W: line 7 [testing-armhf-sbuild]: Deprecated key ‘script-config’ used I: This option will be removed in the future; please update your configuration W: line 7 [wheezy-staging-armhf-sbuild]: Deprecated key ‘script-config’ used I: NOTICE: Log filtering will replace 'build/rmatrix-vHBpEk/rmatrix-1.0-6' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/rmatrix-vHBpEk' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/wheezy-staging-armhf-sbuild-2abf251b-3a34-4d14-9da6-4a7df488d09a' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://archive.raspbian.lan wheezy-staging InRelease Hit http://archive.raspbian.lan wheezy-staging/main Sources Hit http://archive.raspbian.lan wheezy-staging/main armhf Packages Ign http://archive.raspbian.lan wheezy-staging/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... Need to get 2499 kB of source archives. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main rmatrix 1.0-6-1 (dsc) [1058 B] Get:2 http://archive.raspbian.lan/raspbian/ wheezy-staging/main rmatrix 1.0-6-1 (tar) [2494 kB] Get:3 http://archive.raspbian.lan/raspbian/ wheezy-staging/main rmatrix 1.0-6-1 (diff) [4498 B] Fetched 2499 kB in 0s (3528 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-9ZKrnL/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10701 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.0), cdbs, r-base-dev (>= 2.15.0), r-cran-lattice (>= 0.12-11.1) Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.0), cdbs, r-base-dev (>= 2.15.0), r-cran-lattice (>= 0.12-11.1) dpkg-deb: building package `sbuild-build-depends-rmatrix-dummy' in `/«BUILDDIR»/resolver-oEJqEg/apt_archive/sbuild-build-depends-rmatrix-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install rmatrix build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev r-cran-lattice tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev r-cran-lattice sbuild-build-depends-rmatrix-dummy tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 80 newly installed, 0 to remove and 5 not upgraded. Need to get 0 B/55.9 MB of archives. After this operation, 113 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10701 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-5_armhf.deb) ... Selecting previously unselected package libexpat1:armhf. Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ... 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Unpacking x11-common (from .../x11-common_1%3a7.7+1_all.deb) ... Selecting previously unselected package libice6:armhf. Unpacking libice6:armhf (from .../libice6_2%3a1.0.8-2_armhf.deb) ... Selecting previously unselected package libjpeg8:armhf. Unpacking libjpeg8:armhf (from .../libjpeg8_8d-1_armhf.deb) ... Selecting previously unselected package libthai-data. Unpacking libthai-data (from .../libthai-data_0.1.18-1_all.deb) ... Selecting previously unselected package libthai0:armhf. Unpacking libthai0:armhf (from .../libthai0_0.1.18-1_armhf.deb) ... Selecting previously unselected package libxft2:armhf. Unpacking libxft2:armhf (from .../libxft2_2.3.1-1_armhf.deb) ... Selecting previously unselected package fontconfig. Unpacking fontconfig (from .../fontconfig_2.9.0-7_armhf.deb) ... Selecting previously unselected package libpango1.0-0:armhf. Unpacking libpango1.0-0:armhf (from .../libpango1.0-0_1.30.0-1_armhf.deb) ... Selecting previously unselected package libpaper1:armhf. Unpacking libpaper1:armhf (from .../libpaper1_1.1.24+nmu2_armhf.deb) ... Selecting previously unselected package libpcrecpp0:armhf. Unpacking libpcrecpp0:armhf (from .../libpcrecpp0_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libsm6:armhf. Unpacking libsm6:armhf (from .../libsm6_2%3a1.2.1-2_armhf.deb) ... Selecting previously unselected package libjbig0:armhf. Unpacking libjbig0:armhf (from .../libjbig0_2.0-2_armhf.deb) ... Selecting previously unselected package libtiff4:armhf. Unpacking libtiff4:armhf (from .../libtiff4_3.9.6-7_armhf.deb) ... Selecting previously unselected package libxext6:armhf. Unpacking libxext6:armhf (from .../libxext6_2%3a1.3.1-2_armhf.deb) ... Selecting previously unselected package libxss1:armhf. Unpacking libxss1:armhf (from .../libxss1_1%3a1.2.2-1_armhf.deb) ... Selecting previously unselected package libxt6:armhf. Unpacking libxt6:armhf (from .../libxt6_1%3a1.1.3-1_armhf.deb) ... Selecting previously unselected package bsdmainutils. 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Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package gfortran-4.6. Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-8+rpi1_armhf.deb) ... Selecting previously unselected package gfortran. Unpacking gfortran (from .../gfortran_4%3a4.6.3-7_armhf.deb) ... Selecting previously unselected package libblas3. Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armhf.deb) ... Selecting previously unselected package libblas-dev. Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_armhf.deb) ... Selecting previously unselected package libbz2-dev:armhf. Unpacking libbz2-dev:armhf (from .../libbz2-dev_1.0.6-3_armhf.deb) ... Selecting previously unselected package libjpeg8-dev:armhf. Unpacking libjpeg8-dev:armhf (from .../libjpeg8-dev_8d-1_armhf.deb) ... Selecting previously unselected package liblapack3. Unpacking liblapack3 (from .../liblapack3_3.4.1-5_armhf.deb) ... Selecting previously unselected package liblapack-dev. Unpacking liblapack-dev (from .../liblapack-dev_3.4.1-5_armhf.deb) ... Selecting previously unselected package libtinfo-dev:armhf. Unpacking libtinfo-dev:armhf (from .../libtinfo-dev_5.9-10_armhf.deb) ... Selecting previously unselected package libncurses5-dev. Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-10_armhf.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_armhf.deb) ... Selecting previously unselected package libpcre3-dev. Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package zlib1g-dev:armhf. Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_armhf.deb) ... Selecting previously unselected package libpng12-dev. 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Unpacking r-base-core (from .../r-base-core_2.15.1-4_armhf.deb) ... Selecting previously unselected package r-base-dev. Unpacking r-base-dev (from .../r-base-dev_2.15.1-4_all.deb) ... Selecting previously unselected package r-cran-lattice. Unpacking r-cran-lattice (from .../r-cran-lattice_0.20-6-1_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-rmatrix-dummy. Unpacking sbuild-build-depends-rmatrix-dummy (from .../sbuild-build-depends-rmatrix-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-2) ... Setting up libxml2:armhf (2.8.0+dfsg1-5) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-7) ... Setting up libfontconfig1:armhf (2.9.0-7) ... Setting up libpixman-1-0:armhf (0.26.0-3) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:armhf (2:1.5.0-1) ... Setting up libxcb-render0:armhf (1.8.1-1) ... Setting up libxcb-shm0:armhf (1.8.1-1) ... Setting up libxrender1:armhf (1:0.9.7-1) ... Setting up libcairo2:armhf (1.12.2-2) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libgfortran3:armhf (4.7.1-2+rpi1) ... Setting up x11-common (1:7.7+1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libthai-data (0.1.18-1) ... Setting up libthai0:armhf (0.1.18-1) ... Setting up libxft2:armhf (2.3.1-1) ... Setting up fontconfig (2.9.0-7) ... Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.30.0-1) ... Setting up libpaper1:armhf (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:armhf (1:8.30-5) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libjbig0:armhf (2.0-2) ... Setting up libtiff4:armhf (3.9.6-7) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-9) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-9) ... Setting up cdbs (0.4.115) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up gfortran-4.6 (4.6.3-8+rpi1) ... Setting up gfortran (4:4.6.3-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode. Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode. Setting up libbz2-dev:armhf (1.0.6-3) ... Setting up libjpeg8-dev:armhf (8d-1) ... Setting up liblapack3 (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode. Setting up liblapack-dev (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode. Setting up libtinfo-dev:armhf (5.9-10) ... Setting up libncurses5-dev (5.9-10) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ... Setting up libpng12-dev (1.2.49-1) ... Setting up libreadline6-dev:armhf (6.2-8) ... Setting up libreadline-dev:armhf (6.2-8) ... Setting up zip (3.0-6) ... Setting up unzip (6.0-7) ... Setting up xdg-utils (1.1.0~rc1+git20111210-6) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up r-base-core (2.15.1-4) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up r-base-dev (2.15.1-4) ... Setting up r-cran-lattice (0.20-6-1) ... Setting up sbuild-build-depends-rmatrix-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-8+rpi1 gcc-4.6_4.6.3-8+rpi1 libc6-dev_2.13-33 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 cdbs_0.4.115 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-8+rpi1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 fontconfig_2.9.0-7 fontconfig-config_2.9.0-7 g++_4:4.6.3-7 g++-4.6_4.6.3-8+rpi1 gcc_4:4.6.3-7 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-8+rpi1 gcc-4.6-base_4.6.3-8+rpi1 gcc-4.7-base_4.7.1-2+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gfortran_4:4.6.3-7 gfortran-4.6_4.6.3-8+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.3+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libbz2-dev_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libcairo2_1.12.2-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.5-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfontconfig1_2.9.0-7 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-2+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-2+rpi1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-2+rpi1 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1-5 liblapack3_3.4.1-5 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-2 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-3 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-7 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-5 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12+rpi1 perl-base_5.14.2-12+rpi1 perl-modules_5.14.2-12+rpi1 po-debconf_1.0.16+nmu2 r-base-core_2.15.1-4 r-base-dev_2.15.1-4 r-cran-lattice_0.20-6-1 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rmatrix-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 unzip_6.0-7 util-linux_2.20.1-5.1 x11-common_1:7.7+1 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20120614-1 zip_3.0-6 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Apr 1 21:41:09 2012 UTC using DSA key ID 91B0D3B7 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rmatrix_1.0-6-1.dsc dpkg-source: info: extracting rmatrix in rmatrix-1.0-6 dpkg-source: info: unpacking rmatrix_1.0-6.orig.tar.gz dpkg-source: info: applying rmatrix_1.0-6-1.diff.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_ALIAS_NAME=chroot:wheezy-staging-armhf-sbuild SCHROOT_CHROOT_NAME=wheezy-staging-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=wheezy-staging-armhf-sbuild-2abf251b-3a34-4d14-9da6-4a7df488d09a SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package rmatrix dpkg-buildpackage: source version 1.0-6-1 dpkg-source --before-build rmatrix-1.0-6 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules dh_testroot /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "reverse-patches" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi for dir in debian/patches ; do \ rm -f $dir/*.log ; \ done dh_clean if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi make[1]: Entering directory `/«PKGBUILDDIR»' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/library echo "R:Depends=r-base-core (>= 2.15.1-4)" >> debian/r-cran-matrix.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-matrix/usr/lib/R/library --clean \ . ; \ else \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-matrix/usr/lib/R/library \ --clean . ;\ fi * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs make[1]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c CHMfactor.c -o CHMfactor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c Csparse.c -o Csparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c TMatrix_as.c -o TMatrix_as.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c Tsparse.c -o Tsparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c Mutils.c -o Mutils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c chm_common.c -o chm_common.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c cs.c -o cs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c cs_utils.c -o cs_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dense.c -o dense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dgCMatrix.c -o dgCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dgTMatrix.c -o dgTMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dgeMatrix.c -o dgeMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dpoMatrix.c -o dpoMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dppMatrix.c -o dppMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dsCMatrix.c -o dsCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dsyMatrix.c -o dsyMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dspMatrix.c -o dspMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dtCMatrix.c -o dtCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dtTMatrix.c -o dtTMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dtrMatrix.c -o dtrMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c dtpMatrix.c -o dtpMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c factorizations.c -o factorizations.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c ldense.c -o ldense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c lgCMatrix.c -o lgCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c sparseQR.c -o sparseQR.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./UFconfig -fpic -O3 -pipe -g -c abIndex.c -o abIndex.o make[2]: Entering directory `/«PKGBUILDDIR»/src/CHOLMOD' ( cd Lib ; make clean ) make[3]: Entering directory `/«PKGBUILDDIR»/src/CHOLMOD/Lib' make[3]: Leaving directory `/«PKGBUILDDIR»/src/CHOLMOD/Lib' make[2]: Leaving directory `/«PKGBUILDDIR»/src/CHOLMOD' make[2]: Entering directory `/«PKGBUILDDIR»/src/COLAMD' ( cd Source ; make clean ) make[3]: Entering directory `/«PKGBUILDDIR»/src/COLAMD/Source' make[3]: Leaving directory `/«PKGBUILDDIR»/src/COLAMD/Source' make[2]: Leaving directory `/«PKGBUILDDIR»/src/COLAMD' make[2]: Entering directory `/«PKGBUILDDIR»/src/AMD' ( cd Source ; make clean ) make[3]: Entering directory `/«PKGBUILDDIR»/src/AMD/Source' make[3]: Leaving directory `/«PKGBUILDDIR»/src/AMD/Source' make[2]: Leaving directory `/«PKGBUILDDIR»/src/AMD' make[2]: Entering directory `/«PKGBUILDDIR»/src/CHOLMOD' ( cd Lib ; make ) make[3]: Entering directory `/«PKGBUILDDIR»/src/CHOLMOD/Lib' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_add.c -o cholmod_add.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_band.c -o cholmod_band.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_common.c -o cholmod_common.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_error.c -o cholmod_error.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Check/cholmod_check.c -o cholmod_check.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Check/cholmod_read.c -o cholmod_read.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Check/cholmod_write.c -o cholmod_write.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[3]: Leaving directory `/«PKGBUILDDIR»/src/CHOLMOD/Lib' make[2]: Leaving directory `/«PKGBUILDDIR»/src/CHOLMOD' make[2]: Entering directory `/«PKGBUILDDIR»/src/COLAMD' ( cd Source ; make lib ) make[3]: Entering directory `/«PKGBUILDDIR»/src/COLAMD/Source' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -c colamd_global.c -o colamd_global.o colamd_global.c:22:44: warning: initialization from incompatible pointer type [enabled by default] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -c colamd.c -o colamd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[3]: Leaving directory `/«PKGBUILDDIR»/src/COLAMD/Source' make[2]: Leaving directory `/«PKGBUILDDIR»/src/COLAMD' make[2]: Entering directory `/«PKGBUILDDIR»/src/AMD' ( cd Source ; make lib ) make[3]: Entering directory `/«PKGBUILDDIR»/src/AMD/Source' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -c amd_global.c -o amd_global.o amd_global.c:82:41: warning: initialization from incompatible pointer type [enabled by default] gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../UFconfig -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o ar -rucs ../../AMD.a amd_global.o amd_i_1.o amd_i_2.o amd_i_aat.o amd_i_control.o amd_i_defaults.o amd_i_dump.o amd_i_info.o amd_i_order.o amd_i_post_tree.o amd_i_postorder.o amd_i_preprocess.o amd_i_valid.o amd_l_1.o amd_l_2.o amd_l_aat.o amd_l_control.o amd_l_defaults.o amd_l_dump.o amd_l_info.o amd_l_order.o amd_l_post_tree.o amd_l_postorder.o amd_l_preprocess.o amd_l_valid.o make[3]: Leaving directory `/«PKGBUILDDIR»/src/AMD/Source' make[2]: Leaving directory `/«PKGBUILDDIR»/src/AMD' gcc -std=gnu99 -shared -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR make[1]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Entering directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»/src' installing to /«PKGBUILDDIR»/debian/r-cran-matrix/usr/lib/R/library/Matrix/libs ** R ** data ** inst ** preparing package for lazy loading Creating a generic function for 'image' from package 'graphics' in package 'Matrix' Creating a generic function for 'solve' from package 'base' in package 'Matrix' Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'determinant' from package 'base' in package 'Matrix' Creating a generic function for 'update' from package 'stats' in package 'Matrix' Creating a generic function for 't' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'as.matrix' from package 'base' in package 'Matrix' Creating a generic function for 'as.array' from package 'base' in package 'Matrix' Creating a generic function for 'head' from package 'utils' in package 'Matrix' Creating a generic function for 'tail' from package 'utils' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'as.vector' from package 'base' in package 'Matrix' Creating a generic function for 'mean' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'isSymmetric' from package 'base' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'chol' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' Creating a generic function for 'all.equal' from package 'base' in package 'Matrix' Creating a generic function for 'diff' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'qr' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'print' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'format' from package 'base' in package 'Matrix' Creating a generic function for 'summary' from package 'base' in package 'Matrix' Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' ** help *** installing help indices ** building package indices Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'CAex' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'KNex' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'USCounties' not found ** installing vignettes 'Comparisons.Rnw' 'Design-issues.Rnw' 'Intro2Matrix.Rnw' 'Introduction.Rnw' 'sparseModels.Rnw' Cleaning up after installing the Matrix package make[1]: Entering directory `/«PKGBUILDDIR»/src/CHOLMOD' ( cd Lib ; make clean ) make[2]: Entering directory `/«PKGBUILDDIR»/src/CHOLMOD/Lib' make[2]: Leaving directory `/«PKGBUILDDIR»/src/CHOLMOD/Lib' make[1]: Leaving directory `/«PKGBUILDDIR»/src/CHOLMOD' make[1]: Entering directory `/«PKGBUILDDIR»/src/COLAMD' ( cd Source ; make clean ) make[2]: Entering directory `/«PKGBUILDDIR»/src/COLAMD/Source' make[2]: Leaving directory `/«PKGBUILDDIR»/src/COLAMD/Source' make[1]: Leaving directory `/«PKGBUILDDIR»/src/COLAMD' make[1]: Entering directory `/«PKGBUILDDIR»/src/AMD' ( cd Source ; make clean ) make[2]: Entering directory `/«PKGBUILDDIR»/src/AMD/Source' make[2]: Leaving directory `/«PKGBUILDDIR»/src/AMD/Source' ** testing if installed package can be loaded make[1]: Leaving directory `/«PKGBUILDDIR»/src/AMD' * DONE (Matrix) rm -vf /«PKGBUILDDIR»/debian/r-cran-matrix/usr/lib/R/library/R.css \ /«PKGBUILDDIR»/debian/r-cran-matrix/usr/lib/R/library/Matrix/COPYING \ /«PKGBUILDDIR»/debian/r-cran-matrix/usr/lib/R/library/Matrix/LICENSE.txt if test -f debian/overrides; then \ install -d /«PKGBUILDDIR»/debian/r-cran-matrix/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /«PKGBUILDDIR»/debian/r-cran-matrix/usr/share/lintian/overrides/r-cran-matrix; \ fi Adding cdbs dependencies to debian/r-cran-matrix.substvars dh_installdirs -pr-cran-matrix dh_installdocs -pr-cran-matrix ./TODO dh_installexamples -pr-cran-matrix dh_installman -pr-cran-matrix dh_installinfo -pr-cran-matrix dh_installmenu -pr-cran-matrix dh_installcron -pr-cran-matrix dh_installinit -pr-cran-matrix dh_installdebconf -pr-cran-matrix dh_installemacsen -pr-cran-matrix dh_installcatalogs -pr-cran-matrix dh_installpam -pr-cran-matrix dh_installlogrotate -pr-cran-matrix dh_installlogcheck -pr-cran-matrix dh_installchangelogs -pr-cran-matrix ./ChangeLog dh_installudev -pr-cran-matrix dh_lintian -pr-cran-matrix dh_bugfiles -pr-cran-matrix dh_install -pr-cran-matrix dh_link -pr-cran-matrix dh_installmime -pr-cran-matrix dh_installgsettings -pr-cran-matrix dh_strip -pr-cran-matrix dh_compress -pr-cran-matrix dh_fixperms -pr-cran-matrix dh_makeshlibs -pr-cran-matrix dh_installdeb -pr-cran-matrix dh_perl -pr-cran-matrix dh_shlibdeps -pr-cran-matrix dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-matrix/usr/lib/R/library/Matrix/libs/Matrix.so was not linked against libgfortran.so.3 (it uses none of the library's symbols). dh_gencontrol -pr-cran-matrix dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -pr-cran-matrix dh_builddeb -pr-cran-matrix dpkg-deb: building package `r-cran-matrix' in `../r-cran-matrix_1.0-6-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../rmatrix_1.0-6-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build rmatrix-1.0-6 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120814-1136 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ rmatrix_1.0-6-1_armhf.changes: ────────────────────────────── Format: 1.8 Date: Sun, 01 Apr 2012 16:36:57 -0500 Source: rmatrix Binary: r-cran-matrix Architecture: armhf Version: 1.0-6-1 Distribution: wheezy-staging Urgency: low Maintainer: buildd Changed-By: Dirk Eddelbuettel Description: r-cran-matrix - GNU R package of classes for dense and sparse matrices Changes: rmatrix (1.0-6-1) unstable; urgency=low . * New upstream release . * debian/control: Set Build-Depends: to current R version Checksums-Sha1: 0a66bf75d0089778d2288413584cf5db3a31d3fb 3040888 r-cran-matrix_1.0-6-1_armhf.deb Checksums-Sha256: 9a996135dff1786e8f5fdd1daca83340e044d4933a2a7b359f773ad0e055d629 3040888 r-cran-matrix_1.0-6-1_armhf.deb Files: 26350cd4c4b6655fe33fcb46962c4d6d 3040888 gnu-r optional r-cran-matrix_1.0-6-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-cran-matrix_1.0-6-1_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 3040888 bytes: control archive=2726 bytes. 697 bytes, 14 lines control 5656 bytes, 73 lines md5sums Package: r-cran-matrix Source: rmatrix Version: 1.0-6-1 Architecture: armhf Maintainer: Dirk Eddelbuettel Installed-Size: 4163 Depends: libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.13-28), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, r-base-core (>= 2.15.1-4), r-cran-lattice (>= 0.12-11.1) Section: gnu-r Priority: optional Description: GNU R package of classes for dense and sparse matrices This CRAN package provides S4 classes and methods for numerical linear algebra using dense or sparse matrices. The sparse matrix implementation uses code from the LDL sparse matrix package and code from the Metis package of partitioning algorithms. drwxr-xr-x root/root 0 2012-08-14 11:35 ./ drwxr-xr-x root/root 0 2012-08-14 11:35 ./usr/ drwxr-xr-x root/root 0 2012-08-14 11:35 ./usr/share/ drwxr-xr-x root/root 0 2012-08-14 11:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-14 11:35 ./usr/share/doc/r-cran-matrix/ -rw-r--r-- root/root 45042 2012-03-15 07:24 ./usr/share/doc/r-cran-matrix/changelog.gz -rw-r--r-- root/root 3023 2012-08-14 11:20 ./usr/share/doc/r-cran-matrix/changelog.Debian.gz -rw-r--r-- root/root 2169 2012-08-14 11:20 ./usr/share/doc/r-cran-matrix/copyright -rw-r--r-- root/root 5532 2012-03-15 07:24 ./usr/share/doc/r-cran-matrix/TODO.gz drwxr-xr-x root/root 0 2012-08-14 11:21 ./usr/lib/ drwxr-xr-x root/root 0 2012-08-14 11:21 ./usr/lib/R/ drwxr-xr-x root/root 0 2012-08-14 11:35 ./usr/lib/R/library/ drwxr-xr-x root/root 0 2012-08-14 11:35 ./usr/lib/R/library/Matrix/ drwxr-xr-x 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Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* cdbs* debhelper* file* fontconfig* fontconfig-config* gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text* intltool-debian* libasprintf0c2* libblas-dev* libblas3* libbz2-dev* libcairo2* libcroco3* libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgettextpo0* libgfortran3* libglib2.0-0* libice6* libjbig0* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev* r-cran-lattice* sbuild-build-depends-core-dummy* sbuild-build-depends-rmatrix-dummy* tcl8.5* tk8.5* ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev* 0 upgraded, 0 newly installed, 81 to remove and 5 not upgraded. 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Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 14160 Build-Time: 923 Distribution: wheezy-staging Host Architecture: armhf Install-Time: 148 Job: rmatrix_1.0-6-1 Machine Architecture: armhf Package: rmatrix Package-Time: 1091 Source-Version: 1.0-6-1 Space: 14160 Status: successful Version: 1.0-6-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120814-1136 Build needed 00:18:11, 14160k disc space