sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build03.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mustang 3.2.1-3 (armhf) 04 May 2012 21:47 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mustang Version: 3.2.1-3 Source Version: 3.2.1-3 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/mustang-OtSVjT/mustang-3.2.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mustang-OtSVjT' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-d3f8331c-8f72-42ca-94f6-a6f9a72bd194' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'mustang' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/mustang/trunk/ Need to get 169 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main mustang 3.2.1-3 (dsc) [1397 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main mustang 3.2.1-3 (tar) [161 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main mustang 3.2.1-3 (diff) [6406 B] Fetched 169 kB in 0s (3119 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-TudOE7/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9) Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9) dpkg-deb: building package `sbuild-build-depends-mustang-dummy' in `/«BUILDDIR»/resolver-s5KWMu/apt_archive/sbuild-build-depends-mustang-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mustang build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-mustang-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/9349 kB of archives. After this operation, 24.2 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package sbuild-build-depends-mustang-dummy. Unpacking sbuild-build-depends-mustang-dummy (from .../sbuild-build-depends-mustang-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up sbuild-build-depends-mustang-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mustang-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Apr 22 16:43:01 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mustang_3.2.1-3.dsc dpkg-source: info: extracting mustang in mustang-3.2.1 dpkg-source: info: unpacking mustang_3.2.1.orig.tar.gz dpkg-source: info: unpacking mustang_3.2.1-3.debian.tar.gz dpkg-source: info: applying 03-test_zf-cchh.patch dpkg-source: info: applying gcc-4.7.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-d3f8331c-8f72-42ca-94f6-a6f9a72bd194 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package mustang dpkg-buildpackage: source version 3.2.1-3 dpkg-source --before-build mustang-3.2.1 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' rm -f obj/*.o rm -f bin/mustang-3.2* make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/«PKGBUILDDIR»' g++ -traditional -Wall -O3 -c ./src/globals.cpp -o ./obj/globals.o g++ -traditional -Wall -O3 -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o ./src/CmdLineParser_2.cpp: In function 'void CHECK_OPTION_ARGS(CmdLine&)': ./src/CmdLineParser_2.cpp:649:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] g++ -traditional -Wall -O3 -c ./src/distmat.cpp -o ./obj/distmat.o g++ -traditional -Wall -O3 -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -traditional -Wall -O3 -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -traditional -Wall -O3 -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -traditional -Wall -O3 -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -traditional -Wall -O3 -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o ./src/pdb_ripper_2.cpp: In function 'int CHECK_NCHAINS_IN_PDB(char*)': ./src/pdb_ripper_2.cpp:53:6: warning: variable 'chain_id' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -traditional -Wall -O3 -c ./src/ew_2.cpp -o ./obj/ew.o ./src/ew_2.cpp: In function 'void CALCULATE_EDGE_WEIGHTS(int, int, float***)': ./src/ew_2.cpp:217:29: warning: variable 'prev_ROTMAT' set but not used [-Wunused-but-set-variable] ./src/ew_2.cpp:218:51: warning: variable 'prev_CM_S' set but not used [-Wunused-but-set-variable] ./src/ew_2.cpp:218:67: warning: variable 'prev_CM_M' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o g++ -traditional -Wall -O3 -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -traditional -Wall -O3 -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -traditional -Wall -O3 -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -traditional -Wall -O3 -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o ./src/3D_manip_functions.cpp: In function 'void coordinate_transformer(float (*)[500], float (*)[500], int, int, int, int)': ./src/3D_manip_functions.cpp:210:9: warning: variable 'AX' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o ./src/extended_lib_gen_3.cpp: In function 'void EXTENDED_LIBRARY_GENERATION()': ./src/extended_lib_gen_3.cpp:219:20: warning: variable 'AAA' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/progress_align_3.cpp -o ./obj/progress_align.o g++ -traditional -Wall -O3 -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -traditional -Wall -O3 -c ./src/upgma.cpp -o ./obj/upgma.o g++ -traditional -Wall -O3 -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o g++ -traditional -Wall -O3 -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o g++ -traditional -Wall -O3 -c ./src/output_algn.cpp -o ./obj/output_algn.o g++ -traditional -Wall -O3 -c ./src/main.cpp -o ./obj/main.o g++ -traditional -Wall -O3 -o bin/mustang-3.2.1 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/«PKGBUILDDIR»' install -D -m755 bin/mustang-3.2* debian/mustang/usr/bin/mustang make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/«PKGBUILDDIR»' dh_compress -X.pdb make[1]: Leaving directory `/«PKGBUILDDIR»' dh_fixperms -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/mustang/usr/bin/mustang contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package `mustang' in `../mustang_3.2.1-3_armhf.deb'. dpkg-genchanges -B -mbuildd >../mustang_3.2.1-3_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mustang-3.2.1 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120504-2151 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ mustang_3.2.1-3_armhf.changes: ────────────────────────────── Format: 1.8 Date: Sun, 22 Apr 2012 18:18:34 +0200 Source: mustang Binary: mustang mustang-testdata Architecture: armhf Version: 3.2.1-3 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: mustang - multiple structural alignment of proteins mustang-testdata - multiple structural alignment of proteins, test data Closes: 667293 Changes: mustang (3.2.1-3) unstable; urgency=low . * debian/upstream: - Use BibTeX friendly formating of authors * debian/patches/gcc-4.7.patch: Fix build issue with gcc-4.7 Closes: #667293 Checksums-Sha1: 7640028cafa2eae2a14d49ed124684be8f0e49c5 87238 mustang_3.2.1-3_armhf.deb Checksums-Sha256: 0df3b292086f42ef981e7ae7d5a3f3d9312b7fd0e926821087000e37e7b0470b 87238 mustang_3.2.1-3_armhf.deb Files: e2456776916309589f9da7dac0a629cc 87238 science optional mustang_3.2.1-3_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ mustang_3.2.1-3_armhf.deb ───────────────────────── new debian package, version 2.0. size 87238 bytes: control archive= 887 bytes. 822 bytes, 17 lines control 415 bytes, 6 lines md5sums Package: mustang Version: 3.2.1-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 207 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0) Suggests: mustang-testdata Section: science Priority: optional Homepage: http://www.csse.monash.edu.au/~karun/Site/mustang.html Description: multiple structural alignment of proteins Mustang is an algorithm to align multiple protein structures. Given a set of PDB files, the program uses the spatial information in the Calpha atoms of the set to produce a sequence alignment. Based on a progressive pairwise heuristic the algorithm then proceeds through a number of refinement passes. Mustang reports the multiple sequence alignment and the corresponding superposition of structures. drwxr-xr-x root/root 0 2012-05-04 21:51 ./ drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/ drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/bin/ -rwxr-xr-x root/root 160220 2012-05-04 21:51 ./usr/bin/mustang drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/ drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/man/man1/ -rw-r--r-- root/root 1991 2012-05-04 21:51 ./usr/share/man/man1/mustang.1.gz drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/doc/mustang/ -rw-r--r-- root/root 1872 2012-04-22 09:42 ./usr/share/doc/mustang/changelog.Debian.gz -rw-r--r-- root/root 4345 2012-04-22 09:41 ./usr/share/doc/mustang/copyright drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/doc/mustang/examples/ -rw-r--r-- root/root 1671 2009-10-06 23:17 ./usr/share/doc/mustang/examples/test_zf-CCHH-small -rw-r--r-- root/root 569 2009-10-06 23:17 ./usr/share/doc/mustang/examples/runtest ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libcroco3* libffi5* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-mustang-dummy* 0 upgraded, 0 newly installed, 20 to remove and 0 not upgraded. After this operation, 24.2 MB disk space will be freed. (Reading database ... 12059 files and directories currently installed.) Removing sbuild-build-depends-mustang-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 1868 Build-Time: 175 Distribution: testing Install-Time: 51 Job: mustang_3.2.1-3 Package: mustang Package-Time: 241 Source-Version: 3.2.1-3 Space: 1868 Status: successful Version: 3.2.1-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120504-2151 Build needed 00:04:01, 1868k disc space