sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build02.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ maqview 0.2.5-4 (armhf) 19 Jun 2012 03:22 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: maqview Version: 0.2.5-4 Source Version: 0.2.5-4 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/maqview-7qUfDD/maqview-0.2.5' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/maqview-7qUfDD' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-21fef482-8ea9-45e6-9fea-b4d2e1bcce97' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'maqview' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/maqview/trunk/ Need to get 199 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main maqview 0.2.5-4 (dsc) [1413 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main maqview 0.2.5-4 (tar) [189 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main maqview 0.2.5-4 (diff) [8612 B] Fetched 199 kB in 0s (2232 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-ivE90x/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10660 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, automake, freeglut3-dev, dh-autoreconf Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, automake, freeglut3-dev, dh-autoreconf dpkg-deb: building package `sbuild-build-depends-maqview-dummy' in `/«BUILDDIR»/resolver-CFM0Uk/apt_archive/sbuild-build-depends-maqview-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install maqview build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper dh-autoreconf file freeglut3 freeglut3-dev gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3 libdrm2 libffi5 libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice-dev libice6 libmagic1 libpcre3 libpipeline1 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtool libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxi6 libxml2 libxt-dev libxt6 libxxf86vm1 m4 man-db mesa-common-dev po-debconf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff libice-doc libsm-doc libtool-doc automaken gfortran fortran95-compiler gcj libxcb-doc libxext-doc libxt-doc less www-browser libmail-box-perl Recommended packages: autopoint curl wget lynx-cur libgl1-mesa-dri libglib2.0-data shared-mime-info libltdl-dev libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper dh-autoreconf file freeglut3 freeglut3-dev gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3 libdrm2 libffi5 libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice-dev libice6 libmagic1 libpcre3 libpipeline1 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtool libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxi6 libxml2 libxt-dev libxt6 libxxf86vm1 m4 man-db mesa-common-dev po-debconf sbuild-build-depends-maqview-dummy x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 68 newly installed, 0 to remove and 9 not upgraded. Need to get 0 B/18.8 MB of archives. After this operation, 49.6 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10660 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-3_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... 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Unpacking freeglut3-dev (from .../freeglut3-dev_2.6.0-1.1_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-maqview-dummy. Unpacking sbuild-build-depends-maqview-dummy (from .../sbuild-build-depends-maqview-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.8.0+dfsg1-3) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdrm2:armhf (2.4.33-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libglapi-mesa:armhf (8.0.2-2) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.4.99.901-2) ... Setting up libx11-6:armhf (2:1.4.99.901-2) ... Setting up libx11-xcb1:armhf (2:1.4.99.901-2) ... Setting up libxcb-glx0:armhf (1.8.1-1) ... Setting up libxdamage1:armhf (1:1.1.3-2) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxfixes3:armhf (1:5.0-4) ... Setting up libxxf86vm1:armhf (1:1.1.2-1) ... Setting up libgl1-mesa-glx:armhf (8.0.2-2) ... Setting up libglu1-mesa:armhf (8.0.2-2) ... Setting up x11-common (1:7.6+13) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libxi6:armhf (2:1.6.1-1) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up m4 (1.4.16-3) ... Setting up autoconf (2.69-1) ... Setting up autotools-dev (20120608.1) ... Setting up automake (1:1.11.5-2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up libtool (2.4.2-1+b2) ... Setting up dh-autoreconf (6) ... Setting up freeglut3 (2.6.0-1.1) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libxau-dev:armhf (1:1.0.7-1) ... Setting up libxdmcp-dev:armhf (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-1) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libpthread-stubs0:armhf (0.3-3) ... Setting up libpthread-stubs0-dev:armhf (0.3-3) ... Setting up libxcb1-dev:armhf (1.8.1-1) ... Setting up libx11-dev:armhf (2:1.4.99.901-2) ... Setting up mesa-common-dev (8.0.2-2) ... Setting up x11proto-xext-dev (7.2.1-1) ... Setting up libxext-dev:armhf (2:1.3.1-2) ... Setting up libgl1-mesa-dev (8.0.2-2) ... Setting up libglu1-mesa-dev (8.0.2-2) ... Setting up libice-dev:armhf (2:1.0.8-2) ... Setting up libsm-dev:armhf (2:1.2.1-2) ... Setting up libxt-dev:armhf (1:1.1.3-1) ... Setting up freeglut3-dev (2.6.0-1.1) ... Setting up sbuild-build-depends-maqview-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-33 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.18-1 Package versions: apt_0.9.3+rpi1 autoconf_2.69-1 automake_1:1.11.5-2 autotools-dev_20120608.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3.1 dh-autoreconf_6 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 freeglut3_2.6.0-1.1 freeglut3-dev_2.6.0-1.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.3+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.3 libdrm2_2.4.33-1 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libgl1-mesa-dev_8.0.2-2 libgl1-mesa-glx_8.0.2-2 libglapi-mesa_8.0.2-2 libglib2.0-0_2.32.3-1 libglu1-mesa_8.0.2-2 libglu1-mesa-dev_8.0.2-2 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.0-1.1+rpi libice-dev_2:1.0.8-2 libice6_2:1.0.8-2 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-8 libncursesw5_5.9-8 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-3 libslang2_2.2.4-10 libsm-dev_2:1.2.1-2 libsm6_2:1.2.1-2 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-8 libtool_2.4.2-1+b2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libx11-6_2:1.4.99.901-2 libx11-data_2:1.4.99.901-2 libx11-dev_2:1.4.99.901-2 libx11-xcb1_2:1.4.99.901-2 libxau-dev_1:1.0.7-1 libxau6_1:1.0.7-1 libxcb-glx0_1.8.1-1 libxcb1_1.8.1-1 libxcb1-dev_1.8.1-1 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.1-2 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxi6_2:1.6.1-1 libxml2_2.8.0+dfsg1-3 libxt-dev_1:1.1.3-1 libxt6_1:1.1.3-1 libxxf86vm1_1:1.1.2-1 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian6 m4_1.4.16-3 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mesa-common-dev_8.0.2-2 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-7 ncurses-bin_5.9-8 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-maqview-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 x11-common_1:7.6+13 x11proto-core-dev_7.0.23-1 x11proto-input-dev_2.2-1 x11proto-kb-dev_1.0.6-1 x11proto-xext-dev_7.2.1-1 xorg-sgml-doctools_1:1.10-1 xtrans-dev_1.2.7-1 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-11 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Jun 8 07:25:40 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./maqview_0.2.5-4.dsc dpkg-source: info: extracting maqview in maqview-0.2.5 dpkg-source: info: unpacking maqview_0.2.5.orig.tar.gz dpkg-source: info: unpacking maqview_0.2.5-4.debian.tar.gz dpkg-source: info: applying fix-gcc-4.5.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying use-dpkg-buildflags.patch dpkg-source: info: applying fix-hurd-build.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-21fef482-8ea9-45e6-9fea-b4d2e1bcce97 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package maqview dpkg-buildpackage: source version 0.2.5-4 dpkg-source --before-build maqview-0.2.5 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' [ ! -f Makefile ] || /usr/bin/make distclean dh_auto_clean rm -f *.1 make[1]: Leaving directory `/«PKGBUILDDIR»' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a debian/rules override_dh_autoreconf make[1]: Entering directory `/«PKGBUILDDIR»' dh_autoreconf --as-needed configure.ac:5: installing `./config.guess' configure.ac:5: installing `./config.sub' configure.ac:3: installing `./install-sh' configure.ac:3: installing `./missing' Makefile.am: installing `./depcomp' make -f Makefile.generic maqview.1 make[2]: Entering directory `/«PKGBUILDDIR»' pod2man --center "Bioinformatics Tools" --release "maqview-0.2.4" maqview.pod > maqview.1 make[2]: Leaving directory `/«PKGBUILDDIR»' ### The *.class files in the source package can be reproduced by simply running # javac MaqDataClient.java ### however, it is unclear whether this code is used at all make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_configure -a configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes configure: WARNING: Library libglut will be statically linked. checking GL/glut.h usability... yes checking GL/glut.h presence... yes checking for GL/glut.h... yes checking for glutMouseWheelFunc in -lglut... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make[1]: Entering directory `/«PKGBUILDDIR»' make all-am make[2]: Entering directory `/«PKGBUILDDIR»' gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c zrio_main.c zrio_main.c: In function 'main': zrio_main.c:46:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c btree.c btree.c: In function 'btree_append': btree.c:39:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] btree.c:39:3: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' [-Wformat] btree.c: In function 'btree_load': btree.c:284:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] btree.c:295:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] btree.c:296:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] btree.c:297:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] btree.c:298:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c maqmap_index.c maqmap_index.c: In function 'notify': maqmap_index.c:43:69: warning: unused parameter 'pos' [-Wunused-parameter] maqmap_index.c: In function 'read_map_next_to': maqmap_index.c:403:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] maqmap_index.c: In function 'num2str': maqmap_index.c:418:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c zrio.c zrio.c: In function 'get_max_dist': zrio.c:437:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] zrio.c: In function 'build_index': zrio.c:466:24: warning: variable 'state' set but not used [-Wunused-but-set-variable] zrio.c: In function 'load_access': zrio.c:356:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] zrio.c:364:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] zrio.c:365:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] zrio.c:366:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o stdhashc.o stdhashc.cc gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c cns_cache.c cns_cache.c: In function 'make_cns_index': cns_cache.c:150:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] cns_cache.c:151:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] cns_cache.c: In function 'open_cns_cache': cns_cache.c:204:3: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int64_t *' [-Wformat] cns_cache.c:205:3: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int64_t *' [-Wformat] cns_cache.c: In function 'cns_cache_guess': cns_cache.c:392:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat] cns_cache.c:393:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] cns_cache.c:393:3: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' [-Wformat] cns_cache.c: In function 'open_cns_cache': cns_cache.c:193:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cns_cache.c:203:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cns_cache.c:204:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cns_cache.c:205:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c const.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c adler32.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c compress.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c crc32.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c deflate.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c gzio.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c inffast.c inffast.c: In function 'inflate_fast_zr': inffast.c:394:4: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:469:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:477:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:489:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:496:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:498:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:500:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:505:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:508:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:516:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:518:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:520:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:525:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] inffast.c:528:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c inflate.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c infback.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c inftrees.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c trees.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c uncompr.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c zutil.c g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -L/usr/lib -o zrio zrio_main.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c maqmap_index_main.c maqmap_index_main.c: In function 'dump_map': maqmap_index_main.c:67:27: warning: unused parameter 'obj' [-Wunused-parameter] maqmap_index_main.c: In function 'main': maqmap_index_main.c:169:7: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -L/usr/lib -o maqindex maqmap_index_main.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c read_cache.c gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c view_goto.c view_goto.c: In function 'view_resize': view_goto.c:192:41: warning: unused parameter 'h' [-Wunused-parameter] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c view_panel.c view_panel.c: In function 'drawRefSeq_sq': view_panel.c:497:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] view_panel.c: In function 'drawRefSeq_li': view_panel.c:538:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] view_panel.c: In function 'default_paintStatusBar': view_panel.c:892:4: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' [-Wformat] view_panel.c:892:4: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'long long int' [-Wformat] view_panel.c:892:4: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' [-Wformat] view_panel.c:892:4: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'int64_t' [-Wformat] view_panel.c:892:4: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'int64_t' [-Wformat] view_panel.c:892:4: warning: format '%ld' expects argument of type 'long int', but argument 9 has type 'int64_t' [-Wformat] view_panel.c: In function 'default_pick': view_panel.c:1004:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] view_panel.c:1005:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] view_panel.c: In function 'handle_mouse_over': view_panel.c:1120:4: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' [-Wformat] view_panel.c:1133:7: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat] view_panel.c:1137:7: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat] view_panel.c:1109:14: warning: variable 'nav' set but not used [-Wunused-but-set-variable] view_panel.c: In function 'default_mouseReleased': view_panel.c:1176:59: warning: unused parameter 'x' [-Wunused-parameter] view_panel.c:1176:66: warning: unused parameter 'y' [-Wunused-parameter] view_panel.c: In function 'default_mouseWheel': view_panel.c:1236:44: warning: unused parameter 'wheel' [-Wunused-parameter] view_panel.c:1236:70: warning: unused parameter 'x' [-Wunused-parameter] view_panel.c:1236:77: warning: unused parameter 'y' [-Wunused-parameter] view_panel.c: In function 'default_keyTyped': view_panel.c:1336:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' [-Wformat] view_panel.c:1250:61: warning: unused parameter 'x' [-Wunused-parameter] view_panel.c:1250:68: warning: unused parameter 'y' [-Wunused-parameter] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c gl_gui.c gl_gui.c: In function 'GList_mouse': gl_gui.c:127:45: warning: unused parameter 'x' [-Wunused-parameter] gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c MainFrame.c MainFrame.c: In function 'main': MainFrame.c:184:9: warning: variable 'h' set but not used [-Wunused-but-set-variable] MainFrame.c:184:6: warning: variable 'w' set but not used [-Wunused-but-set-variable] g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -L/usr/lib -o maqview read_cache.o view_goto.o view_panel.o gl_gui.o MainFrame.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o -Wl,-Bstatic -lglut -Wl,-Bdynamic -lGL -lGLU -lm -lX11 gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -I/usr/include -DHAVE_FREEGLUT -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c socket_view.c socket_view.c: In function 'custom_socket': socket_view.c:4:11: warning: variable 'no' set but not used [-Wunused-but-set-variable] socket_view.c: In function 'read_full': socket_view.c:20:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] socket_view.c: In function 'send_maq_data': socket_view.c:108:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] socket_view.c:112:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] socket_view.c: In function 'recv_maq_data': socket_view.c:133:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] socket_view.c:139:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] socket_view.c: In function 'service_core': socket_view.c:260:5: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' [-Wformat] socket_view.c:260:5: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'int64_t' [-Wformat] socket_view.c: In function 'main': socket_view.c:484:5: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' [-Wformat] socket_view.c: In function 'closeViewClient': socket_view.c:405:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -L/usr/lib -o maqindex_socks read_cache.o view_goto.o socket_view.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o -Wl,-Bstatic -lglut -Wl,-Bdynamic -lGL -lGLU -lm -lX11 make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make[1]: Entering directory `/«PKGBUILDDIR»' make[2]: Entering directory `/«PKGBUILDDIR»' /bin/mkdir -p '/«PKGBUILDDIR»/debian/maqview/usr/bin' /usr/bin/install -c zrio maqindex maqview maqindex_socks '/«PKGBUILDDIR»/debian/maqview/usr/bin' make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/maqview/usr/bin/maqindex contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/maqview/usr/bin/maqview contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/maqview/usr/bin/zrio contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/maqview/usr/bin/maqindex_socks contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package `maqview' in `../maqview_0.2.5-4_armhf.deb'. dpkg-genchanges -B -mbuildd >../maqview_0.2.5-4_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build maqview-0.2.5 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120619-0327 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ maqview_0.2.5-4_armhf.changes: ────────────────────────────── Format: 1.8 Date: Fri, 08 Jun 2012 09:13:46 +0200 Source: maqview Binary: maqview Architecture: armhf Version: 0.2.5-4 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: maqview - graphical read alignment viewer for short gene sequences Closes: 675622 Changes: maqview (0.2.5-4) unstable; urgency=low . * debian/watch: call debian/get-orig-source * debian/get-orig-source: Enable download directly from uscan * debian/patches/fix-hurd-build.patch: Enable building under GNU/Hurd (Thanks to Cyril Roelandt for the patch) Closes: #675622 Checksums-Sha1: c9b94eb01698b87254b58f2c498d9d81ae7255ae 331818 maqview_0.2.5-4_armhf.deb Checksums-Sha256: fe148e714aa8b330b59a99bc85b3253be075f3116ed0b001f0743781d1752e6d 331818 maqview_0.2.5-4_armhf.deb Files: 294fef730749e13fd6c70fb934ccbd70 331818 science optional maqview_0.2.5-4_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ maqview_0.2.5-4_armhf.deb ───────────────────────── new debian package, version 2.0. size 331818 bytes: control archive= 1238 bytes. 1209 bytes, 23 lines control 752 bytes, 12 lines md5sums Package: maqview Version: 0.2.5-4 Architecture: armhf Maintainer: Debian-Med Packaging Team Installed-Size: 670 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libstdc++6 (>= 4.1.1), libx11-6 Section: science Priority: optional Homepage: http://maq.sourceforge.net/maqview.shtml Description: graphical read alignment viewer for short gene sequences Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region. . In comparison to tgap-maq, the text-based read alignment viewer writen by James Bonfield, Maqview is faster and takes up much less memory and disk space in indexing. This is possibly because tgap aims to be a general-purpose viewer but Maqview fully makes use of the fact that a Maq alignment file has already been sorted. Maqview is also efficient in viewing and provides a command-line tool to quickly retrieve any region in an Maq alignment file. drwxr-xr-x root/root 0 2012-06-19 03:27 ./ drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/ drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/share/ drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/share/doc/maqview/ -rw-r--r-- root/root 3233 2008-03-21 20:06 ./usr/share/doc/maqview/changelog.gz -rw-r--r-- root/root 757 2012-06-08 00:23 ./usr/share/doc/maqview/changelog.Debian.gz -rw-r--r-- root/root 2121 2008-08-23 20:42 ./usr/share/doc/maqview/README.gz -rw-r--r-- root/root 4592 2012-04-27 06:11 ./usr/share/doc/maqview/copyright -rw-r--r-- root/root 576 2010-11-21 23:55 ./usr/share/doc/maqview/README.Debian -rw-r--r-- root/root 1096 2008-03-21 20:06 ./usr/share/doc/maqview/NEWS.gz drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/share/man/ drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/share/man/man1/ -rw-r--r-- root/root 3652 2012-06-19 03:27 ./usr/share/man/man1/maqview.1.gz drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 414 2012-04-27 14:49 ./usr/share/lintian/overrides/maqview drwxr-xr-x root/root 0 2012-06-19 03:27 ./usr/bin/ -rwxr-xr-x root/root 293068 2012-06-19 03:27 ./usr/bin/maqview -rwxr-xr-x root/root 108836 2012-06-19 03:27 ./usr/bin/maqindex -rwxr-xr-x root/root 104720 2012-06-19 03:27 ./usr/bin/zrio -rwxr-xr-x root/root 117204 2012-06-19 03:27 ./usr/bin/maqindex_socks ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autoconf* automake* autotools-dev* bsdmainutils* debhelper* dh-autoreconf* file* freeglut3* freeglut3-dev* gettext* gettext-base* groff-base* html2text* intltool-debian* libasprintf0c2* libcroco3* libdrm2* libffi5* libgettextpo0* libgl1-mesa-dev* libgl1-mesa-glx* libglapi-mesa* libglib2.0-0* libglu1-mesa* libglu1-mesa-dev* libice-dev* libice6* libmagic1* libpcre3* libpipeline1* libpthread-stubs0* libpthread-stubs0-dev* libsm-dev* libsm6* libtool* libunistring0* libx11-6* libx11-data* libx11-dev* libx11-xcb1* libxau-dev* libxau6* libxcb-glx0* libxcb1* libxcb1-dev* libxdamage1* libxdmcp-dev* libxdmcp6* libxext-dev* libxext6* libxfixes3* libxi6* libxml2* libxt-dev* libxt6* libxxf86vm1* m4* man-db* mesa-common-dev* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-maqview-dummy* x11-common* x11proto-core-dev* x11proto-input-dev* x11proto-kb-dev* x11proto-xext-dev* xorg-sgml-doctools* xtrans-dev* 0 upgraded, 0 newly installed, 69 to remove and 9 not upgraded. After this operation, 49.6 MB disk space will be freed. (Reading database ... 13609 files and directories currently installed.) Removing sbuild-build-depends-maqview-dummy ... Removing dh-autoreconf ... Removing automake ... Removing autoconf ... Purging configuration files for autoconf ... Removing libtool ... Removing autotools-dev ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing file ... Removing freeglut3-dev ... Removing freeglut3 ... Purging configuration files for freeglut3 ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libasprintf0c2:armhf ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglu1-mesa-dev ... 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Removing libx11-data ... Removing libxau-dev:armhf ... Removing libxcb-glx0:armhf ... Purging configuration files for libxcb-glx0:armhf ... Removing libxcb1:armhf ... Purging configuration files for libxcb1:armhf ... Removing libxau6:armhf ... Purging configuration files for libxau6:armhf ... Removing libxdmcp-dev:armhf ... Removing libxdmcp6:armhf ... Purging configuration files for libxdmcp6:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing m4 ... Removing sbuild-build-depends-core-dummy ... Removing x11-common ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing x11proto-xext-dev ... Removing x11proto-input-dev ... Removing x11proto-core-dev ... Removing x11proto-kb-dev ... Removing xorg-sgml-doctools ... Removing xtrans-dev ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 5428 Build-Time: 156 Distribution: testing Install-Time: 128 Job: maqview_0.2.5-4 Package: maqview Package-Time: 305 Source-Version: 0.2.5-4 Space: 5428 Status: successful Version: 0.2.5-4 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120619-0327 Build needed 00:05:05, 5428k disc space