sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build04.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ glam2 1064-1 (armhf) 14 May 2012 05:30 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: glam2 Version: 1064-1 Source Version: 1064-1 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/glam2-tjDfsP/glam2-1064' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/glam2-tjDfsP' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-9a9f6296-4aae-434e-a2b7-9a8fd441bf25' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'glam2' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/glam2/trunk/ Need to get 249 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main glam2 1064-1 (dsc) [1292 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main glam2 1064-1 (tar) [238 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main glam2 1064-1 (diff) [9459 B] Fetched 249 kB in 0s (3911 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-ZSJsoS/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10681 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), cdbs, quilt, libfftw3-dev Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), cdbs, quilt, libfftw3-dev dpkg-deb: building package `sbuild-build-depends-glam2-dummy' in `/«BUILDDIR»/resolver-mpWxLS/apt_archive/sbuild-build-depends-glam2-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install glam2 build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libfftw3-3 libfftw3-dev libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libfftw3-3 libfftw3-dev libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-glam2-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 24 newly installed, 0 to remove and 2 not upgraded. Need to get 0 B/12.7 MB of archives. After this operation, 31.4 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10681 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.111_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-2_armhf.deb) ... Selecting previously unselected package libfftw3-3. Unpacking libfftw3-3 (from .../libfftw3-3_3.3-1_armhf.deb) ... Selecting previously unselected package libfftw3-dev. Unpacking libfftw3-dev (from .../libfftw3-dev_3.3-1_armhf.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ... Selecting previously unselected package sbuild-build-depends-glam2-dummy. Unpacking sbuild-build-depends-glam2-dummy (from .../sbuild-build-depends-glam2-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up cdbs (0.4.111) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up diffstat (1.55-2) ... Setting up libfftw3-3 (3.3-1) ... Setting up libfftw3-dev (3.3-1) ... Setting up quilt (0.60-2) ... Setting up sbuild-build-depends-glam2-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-32 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.111 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffstat_1.55-2 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.3 libffi5_3.0.10-3+b3 libfftw3-3_3.3-1 libfftw3-dev_3.3-1 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-32 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-glam2-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon May 19 10:09:29 2008 UTC using DSA key ID BAFEC7F2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./glam2_1064-1.dsc dpkg-source: info: extracting glam2 in glam2-1064 dpkg-source: info: unpacking glam2_1064.orig.tar.gz dpkg-source: info: applying glam2_1064-1.diff.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-9a9f6296-4aae-434e-a2b7-9a8fd441bf25 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package glam2 dpkg-buildpackage: source version 1064-1 dpkg-source --before-build glam2-1064 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" -k clean make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: *** No rule to make target `clean'. make[1]: Leaving directory `/«PKGBUILDDIR»' make: [makefile-clean] Error 2 (ignored) /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed rm -rf ./.pc rm -f debian/stamp-patch* dh_clean dh_clean: No compatibility level specified in debian/compat dh_clean: This package will soon FTBFS; time to fix it! dh_clean: Compatibility levels before 5 are deprecated (level 1 in use) rm -f purge/*.o purge/purge src/*.o src/glam2, src/glam2mask, scr/glam2format src/glam2scan src/glam2fft debian/rules build-arch test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable echo 5 >debian/compat /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 No series file found touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" --directory src all glam2fft make[1]: Entering directory `/«PKGBUILDDIR»/src' cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -o glam2 alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c -lm cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -o glam2scan alphabet.c scan_args.c dirichlet.c dna_prior.c fasta.c scan.c scan_init.c scan_output.c recode3_20comp.c util.c heap.c motif.c alignment.c -lm cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -o glam2format glam2format.c alignment.c fasta.c util.c -lm cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -o glam2mask glam2mask.c alignment.c fasta.c util.c -lm cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -DFFT -o glam2fft alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c convolve.c -lm -lfftw3 make[1]: Leaving directory `/«PKGBUILDDIR»/src' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" --directory purge make[1]: Entering directory `/«PKGBUILDDIR»/purge' cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -o purge *.c -lm block.c: In function 'IntersectBlockL': block.c:314:18: warning: operation on '*(B2->b + (unsigned int)e)' may be undefined [-Wsequence-point] gblast.c: In function 'MakeGBlast': gblast.c:14:14: warning: variable 'time1' set but not used [-Wunused-but-set-variable] gblast.c:11:9: warning: variable 'R' set but not used [-Wunused-but-set-variable] sequence.c: In function 'CenterSeqHSP': sequence.c:429:17: warning: variable 'score' set but not used [-Wunused-but-set-variable] make[1]: Leaving directory `/«PKGBUILDDIR»/purge' fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs -A mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" --directory purge make[1]: Entering directory `/«PKGBUILDDIR»/purge' make[1]: `purge' is up to date. make[1]: Leaving directory `/«PKGBUILDDIR»/purge' DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target Adding cdbs dependencies to debian/glam2.substvars dh_installdirs -pglam2 dh_installdocs -pglam2 ./README dh_installexamples -pglam2 dh_installman -pglam2 dh_installinfo -pglam2 dh_installmenu -pglam2 dh_installcron -pglam2 dh_installinit -pglam2 dh_installdebconf -pglam2 dh_installemacsen -pglam2 dh_installcatalogs -pglam2 dh_installpam -pglam2 dh_installlogrotate -pglam2 dh_installlogcheck -pglam2 dh_installchangelogs -pglam2 ./ChangeLog dh_installudev -pglam2 dh_lintian -pglam2 dh_bugfiles -pglam2 dh_install -pglam2 dh_link -pglam2 dh_installmime -pglam2 dh_installgsettings -pglam2 dh_strip -pglam2 dh_compress -pglam2 -X .pdf dh_fixperms -pglam2 dh_makeshlibs -pglam2 # purge is renamed glam2-purge to avoid namespace problems. mv /«PKGBUILDDIR»/debian/glam2/usr/bin/purge /«PKGBUILDDIR»/debian/glam2/usr/bin/glam2-purge # FFT is enabled by default in Debian. mv /«PKGBUILDDIR»/debian/glam2/usr/bin/glam2fft /«PKGBUILDDIR»/debian/glam2/usr/bin/glam2 dh_installdeb -pglam2 dh_perl -pglam2 dh_shlibdeps -pglam2 dh_gencontrol -pglam2 dh_md5sums -pglam2 dh_builddeb -pglam2 dpkg-deb: building package `glam2' in `../glam2_1064-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../glam2_1064-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build glam2-1064 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120514-0534 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ glam2_1064-1_armhf.changes: ─────────────────────────── Format: 1.8 Date: Mon, 19 May 2008 18:46:20 +0900 Source: glam2 Binary: glam2 Architecture: armhf Version: 1064-1 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Charles Plessy Description: glam2 - gapped protein motifs from unaligned sequences Changes: glam2 (1064-1) unstable; urgency=low . [ Charles Plessy ] * New upstream release - One paragraph added to the tutorial. - Uses CFLAGS in makefiles (thanks Martin!) * Changed the doc-base section according to the new policy. * Updated my email address. * Added a get-orig-source target in debian/rules. * debian/patches/Makefiles removed because obsoleted. . [ Andreas Tille ] * Better formatting of long description. Checksums-Sha1: f8bcaec541ef55455422862278f1576ca08450ea 246290 glam2_1064-1_armhf.deb Checksums-Sha256: 6183887513fb0b9c789aa6037ae1448b92e7838566c2a248637e268b0728db62 246290 glam2_1064-1_armhf.deb Files: 747e1be914541bea9740637ca0242167 246290 science optional glam2_1064-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ glam2_1064-1_armhf.deb ────────────────────── new debian package, version 2.0. size 246290 bytes: control archive= 1949 bytes. 1367 bytes, 29 lines control 2336 bytes, 35 lines md5sums Package: glam2 Version: 1064-1 Architecture: armhf Maintainer: Debian-Med Packaging Team Installed-Size: 409 Depends: libc6 (>= 2.13-28), libfftw3-3 Section: science Priority: optional Homepage: http://bioinformatics.org.au/glam2/ Description: gapped protein motifs from unaligned sequences GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs. . The package includes these programs: glam2: discovering motifs shared by a set of sequences; glam2scan: finding matches, in a sequence database, to a motif discovered by glam2; glam2format: converting glam2 motifs to standard alignment formats; glam2mask: masking glam2 motifs out of sequences, so that weaker motifs can be found; glam2-purge: removing highly similar members of a set of sequences. . In this package, the fast Fourier algorithm (FFT) was enabled for glam2. . If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey (2008) Discovering sequence motifs with arbitrary insertions and deletions, PLoS Computational Biology (in press). drwxr-xr-x root/root 0 2012-05-14 05:33 ./ drwxr-xr-x root/root 0 2012-05-14 05:34 ./usr/ drwxr-xr-x root/root 0 2012-05-14 05:34 ./usr/bin/ -rwxr-xr-x root/root 35076 2012-05-14 05:34 ./usr/bin/glam2scan -rwxr-xr-x root/root 46068 2012-05-14 05:34 ./usr/bin/glam2-purge -rwxr-xr-x root/root 20036 2012-05-14 05:34 ./usr/bin/glam2format -rwxr-xr-x root/root 52300 2012-05-14 05:34 ./usr/bin/glam2 -rwxr-xr-x root/root 16680 2012-05-14 05:34 ./usr/bin/glam2mask drwxr-xr-x root/root 0 2012-05-14 05:33 ./usr/share/ drwxr-xr-x root/root 0 2012-05-14 05:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-14 05:34 ./usr/share/doc/glam2/ -rw-r--r-- root/root 79 2007-08-23 02:34 ./usr/share/doc/glam2/README -rw-r--r-- root/root 2134 2007-08-23 02:08 ./usr/share/doc/glam2/glam2format.html -rw-r--r-- root/root 93 2007-08-07 01:29 ./usr/share/doc/glam2/glam2.css -rw-r--r-- root/root 13483 2008-05-09 09:05 ./usr/share/doc/glam2/glam2_tut.html -rw-r--r-- root/root 287 2012-05-14 05:31 ./usr/share/doc/glam2/README.Debian -rw-r--r-- root/root 3222 2007-08-23 04:19 ./usr/share/doc/glam2/alphabet.html -rw-r--r-- root/root 1639 2007-08-23 02:08 ./usr/share/doc/glam2/dirichlet.html -rw-r--r-- root/root 507 2012-05-14 05:31 ./usr/share/doc/glam2/changelog.Debian.gz drwxr-xr-x root/root 0 2012-05-14 05:34 ./usr/share/doc/glam2/examples/ -rw-r--r-- root/root 2810 2007-04-11 19:03 ./usr/share/doc/glam2/examples/recode3.20comp.gz -rw-r--r-- root/root 369 2007-04-11 19:03 ./usr/share/doc/glam2/examples/robinson.alph -rw-r--r-- root/root 977 2007-06-12 22:01 ./usr/share/doc/glam2/examples/lipocalin.s -rw-r--r-- root/root 359 2007-04-11 19:03 ./usr/share/doc/glam2/examples/glam_tfbs.1comp -rw-r--r-- root/root 2106 2007-06-12 22:01 ./usr/share/doc/glam2/examples/crp0.s -rw-r--r-- root/root 61 2007-04-11 19:03 ./usr/share/doc/glam2/examples/dna.alph -rw-r--r-- root/root 3705 2008-01-20 18:45 ./usr/share/doc/glam2/index.html -rw-r--r-- root/root 2690 2007-11-07 18:14 ./usr/share/doc/glam2/purge.html -rw-r--r-- root/root 3892 2007-08-23 02:10 ./usr/share/doc/glam2/glam2scan.html -rw-r--r-- root/root 2556 2008-05-18 18:21 ./usr/share/doc/glam2/install.html -rw-r--r-- root/root 5645 2007-08-23 04:27 ./usr/share/doc/glam2/glam2_ref.html -rw-r--r-- root/root 144918 2007-11-26 00:15 ./usr/share/doc/glam2/GLAM2_method.pdf -rw-r--r-- root/root 344 2008-05-18 18:28 ./usr/share/doc/glam2/changelog.gz -rw-r--r-- root/root 3149 2012-05-14 05:31 ./usr/share/doc/glam2/copyright -rw-r--r-- root/root 1164 2007-08-23 02:08 ./usr/share/doc/glam2/glam2mask.html drwxr-xr-x root/root 0 2012-05-14 05:33 ./usr/share/doc-base/ -rw-r--r-- root/root 462 2012-05-14 05:31 ./usr/share/doc-base/glam2-manual -rw-r--r-- root/root 231 2012-05-14 05:31 ./usr/share/doc-base/glam2-method drwxr-xr-x root/root 0 2012-05-14 05:33 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-14 05:34 ./usr/share/man/man1/ -rw-r--r-- root/root 1124 2012-05-14 05:33 ./usr/share/man/man1/glam2scan.1.gz -rw-r--r-- root/root 1502 2012-05-14 05:33 ./usr/share/man/man1/glam2.1.gz -rw-r--r-- root/root 1366 2012-05-14 05:33 ./usr/share/man/man1/glam2format.1.gz -rw-r--r-- root/root 1418 2012-05-14 05:33 ./usr/share/man/man1/glam2-purge.1.gz -rw-r--r-- root/root 1011 2012-05-14 05:33 ./usr/share/man/man1/glam2mask.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* cdbs* debhelper* diffstat* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libcroco3* libffi5* libfftw3-3* libfftw3-dev* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2* man-db* po-debconf* quilt* sbuild-build-depends-core-dummy* sbuild-build-depends-glam2-dummy* 0 upgraded, 0 newly installed, 25 to remove and 2 not upgraded. After this operation, 31.4 MB disk space will be freed. (Reading database ... 12253 files and directories currently installed.) Removing sbuild-build-depends-glam2-dummy ... Removing quilt ... Purging configuration files for quilt ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing cdbs ... Removing diffstat ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libfftw3-dev ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 2460 Build-Time: 187 Distribution: testing Install-Time: 58 Job: glam2_1064-1 Package: glam2 Package-Time: 262 Source-Version: 1064-1 Space: 2460 Status: successful Version: 1064-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120514-0534 Build needed 00:04:22, 2460k disc space