sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build02.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ autodocksuite 4.2.3-2 (armhf) 04 May 2012 20:14 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: autodocksuite Version: 4.2.3-2 Source Version: 4.2.3-2 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/autodocksuite-ofJSZS/autodocksuite-4.2.3' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/autodocksuite-ofJSZS' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-a3d4524b-e192-4be5-b492-6eca699baad0' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'autodocksuite' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/autodocksuite/trunk/ Need to get 3641 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main autodocksuite 4.2.3-2 (dsc) [1477 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main autodocksuite 4.2.3-2 (tar) [3629 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main autodocksuite 4.2.3-2 (diff) [10.1 kB] Fetched 3641 kB in 0s (8560 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-9lTgK0/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), automake, csh Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), automake, csh dpkg-deb: building package `sbuild-build-depends-autodocksuite-dummy' in `/«BUILDDIR»/resolver-TaoCuR/apt_archive/sbuild-build-depends-autodocksuite-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install autodocksuite build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils csh debhelper file gettext gettext-base groff-base html2text intltool-debian libbsd0 libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 m4 man-db po-debconf Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils csh debhelper file gettext gettext-base groff-base html2text intltool-debian libbsd0 libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-autodocksuite-dummy 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. Need to get 236 kB/11.4 MB of archives. After this operation, 28.9 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main csh armhf 20110502-2 [236 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 236 kB in 0s (6119 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libbsd0:armhf. Unpacking libbsd0:armhf (from .../libbsd0_0.3.0-2_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../archives/m4_1.4.16-2_armhf.deb) ... Selecting previously unselected package autoconf. Unpacking autoconf (from .../autoconf_2.68-1_all.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ... Selecting previously unselected package automake. Unpacking automake (from .../automake_1%3a1.11.5-1_all.deb) ... Selecting previously unselected package csh. Unpacking csh (from .../csh_20110502-2_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package sbuild-build-depends-autodocksuite-dummy. Unpacking sbuild-build-depends-autodocksuite-dummy (from .../sbuild-build-depends-autodocksuite-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libbsd0:armhf (0.3.0-2) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up m4 (1.4.16-2) ... Setting up autoconf (2.68-1) ... Setting up autotools-dev (20120210.1) ... Setting up automake (1:1.11.5-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up csh (20110502-2) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up sbuild-build-depends-autodocksuite-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 autoconf_2.68-1 automake_1:1.11.5-1 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 csh_20110502-2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 m4_1.4.16-2 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-autodocksuite-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Sep 4 13:03:56 2011 UTC using DSA key ID BE9D5339 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./autodocksuite_4.2.3-2.dsc dpkg-source: info: extracting autodocksuite in autodocksuite-4.2.3 dpkg-source: info: unpacking autodocksuite_4.2.3.orig.tar.gz dpkg-source: info: applying autodocksuite_4.2.3-2.diff.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-a3d4524b-e192-4be5-b492-6eca699baad0 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package autodocksuite dpkg-buildpackage: source version 4.2.3-2 dpkg-source --before-build autodocksuite-4.2.3 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp configure-stamp for d in autodock autogrid; \ do \ if [ -r $d/Makefile ]; then /usr/bin/make -C $d distclean; fi \ done dh_clean configure-stamp debian/rules build-arch dh_testdir set -e; \ for d in autogrid autodock; do \ ( cd $d && autoreconf -i && ./configure CC="gcc" CXX="g++" LDFLAGS=""-Wl,--as-needed"" CFLAGS="-Wall -g -O2 -Winline -finline-functions" CXXFLAGS="-Wall -g -O2 -Winline -finline-functions" --prefix=/usr ) \ done checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking build system type... armv7l-unknown-linux-gnu checking host system type... armv7l-unknown-linux-gnu checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for sqrt in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for pow... yes checking for round... yes checking for sqrt... yes checking for strncasecmp... yes configure: creating ./config.status config.status: creating Makefile config.status: linking ../autodock/read_parameter_library.cc to read_parameter_library.cpp config.status: executing depfiles commands checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gawk... (cached) mawk checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for ranlib... ranlib checking build system type... armv7l-unknown-linux-gnu checking host system type... armv7l-unknown-linux-gnu checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for pow... no checking for sqrt... no checking for strncasecmp... yes configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands touch configure-stamp set -e; \ for d in autogrid autodock; do /usr/bin/make -C $d; done make[1]: Entering directory `/«PKGBUILDDIR»/autogrid' rm -f default_parameters.h csh ./../autodock/paramdat2h.csh ./../autodock/AD4_parameters.dat ./../autodock/AD4.1_bound.dat > default_parameters.h /usr/bin/make all-am make[2]: Entering directory `/«PKGBUILDDIR»/autogrid' g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-main.o -MD -MP -MF .deps/autogrid4-main.Tpo -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp main.cpp: In function 'int main(int, char**)': main.cpp:209:5: warning: variable 'parameter_library_found' set but not used [-Wunused-but-set-variable] main.cpp:258:8: warning: variable 'maptypeptr' set but not used [-Wunused-but-set-variable] main.cpp:295:44: warning: variable 'nitrogen' set but not used [-Wunused-but-set-variable] main.cpp:296:21: warning: variable 'nonHB_nitrogen' set but not used [-Wunused-but-set-variable] main.cpp:296:46: warning: variable 'nonHB_sulphur' set but not used [-Wunused-but-set-variable] mv -f .deps/autogrid4-main.Tpo .deps/autogrid4-main.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-check_size.o -MD -MP -MF .deps/autogrid4-check_size.Tpo -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp mv -f .deps/autogrid4-check_size.Tpo .deps/autogrid4-check_size.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-setflags.o -MD -MP -MF .deps/autogrid4-setflags.Tpo -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp mv -f .deps/autogrid4-setflags.Tpo .deps/autogrid4-setflags.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-timesys.o -MD -MP -MF .deps/autogrid4-timesys.Tpo -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp mv -f .deps/autogrid4-timesys.Tpo .deps/autogrid4-timesys.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-timesyshms.o -MD -MP -MF .deps/autogrid4-timesyshms.Tpo -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp mv -f .deps/autogrid4-timesyshms.Tpo .deps/autogrid4-timesyshms.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-printhms.o -MD -MP -MF .deps/autogrid4-printhms.Tpo -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp mv -f .deps/autogrid4-printhms.Tpo .deps/autogrid4-printhms.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-prHMSfixed.o -MD -MP -MF .deps/autogrid4-prHMSfixed.Tpo -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp mv -f .deps/autogrid4-prHMSfixed.Tpo .deps/autogrid4-prHMSfixed.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-printdate.o -MD -MP -MF .deps/autogrid4-printdate.Tpo -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp mv -f .deps/autogrid4-printdate.Tpo .deps/autogrid4-printdate.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-strindex.o -MD -MP -MF .deps/autogrid4-strindex.Tpo -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp mv -f .deps/autogrid4-strindex.Tpo .deps/autogrid4-strindex.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-banner.o -MD -MP -MF .deps/autogrid4-banner.Tpo -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp mv -f .deps/autogrid4-banner.Tpo .deps/autogrid4-banner.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-gpfparser.o -MD -MP -MF .deps/autogrid4-gpfparser.Tpo -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp mv -f .deps/autogrid4-gpfparser.Tpo .deps/autogrid4-gpfparser.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-parsetypes.o -MD -MP -MF .deps/autogrid4-parsetypes.Tpo -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp mv -f .deps/autogrid4-parsetypes.Tpo .deps/autogrid4-parsetypes.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-atom_parameter_manager.o -MD -MP -MF .deps/autogrid4-atom_parameter_manager.Tpo -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp mv -f .deps/autogrid4-atom_parameter_manager.Tpo .deps/autogrid4-atom_parameter_manager.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-read_parameter_library.o -MD -MP -MF .deps/autogrid4-read_parameter_library.Tpo -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp mv -f .deps/autogrid4-read_parameter_library.Tpo .deps/autogrid4-read_parameter_library.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-parse_param_line.o -MD -MP -MF .deps/autogrid4-parse_param_line.Tpo -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp mv -f .deps/autogrid4-parse_param_line.Tpo .deps/autogrid4-parse_param_line.Po g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I./../autodock -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT autogrid4-distdepdiel.o -MD -MP -MF .deps/autogrid4-distdepdiel.Tpo -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp mv -f .deps/autogrid4-distdepdiel.Tpo .deps/autogrid4-distdepdiel.Po g++ -Wall -g -O2 -Winline -finline-functions -Wl,--as-needed -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o -lm make[2]: Leaving directory `/«PKGBUILDDIR»/autogrid' make[1]: Leaving directory `/«PKGBUILDDIR»/autogrid' make[1]: Entering directory `/«PKGBUILDDIR»/autodock' rm -f default_parameters.h csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h /usr/bin/make all-am make[2]: Entering directory `/«PKGBUILDDIR»/autodock' g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT alea.o -MD -MP -MF .deps/alea.Tpo -c -o alea.o alea.cc mv -f .deps/alea.Tpo .deps/alea.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT analysis.o -MD -MP -MF .deps/analysis.Tpo -c -o analysis.o analysis.cc mv -f .deps/analysis.Tpo .deps/analysis.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT atom_parameter_manager.o -MD -MP -MF .deps/atom_parameter_manager.Tpo -c -o atom_parameter_manager.o atom_parameter_manager.cc mv -f .deps/atom_parameter_manager.Tpo .deps/atom_parameter_manager.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT banner.o -MD -MP -MF .deps/banner.Tpo -c -o banner.o banner.cc mv -f .deps/banner.Tpo .deps/banner.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT bestpdb.o -MD -MP -MF .deps/bestpdb.Tpo -c -o bestpdb.o bestpdb.cc mv -f .deps/bestpdb.Tpo .deps/bestpdb.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT calculateEnergies.o -MD -MP -MF .deps/calculateEnergies.Tpo -c -o calculateEnergies.o calculateEnergies.cc mv -f .deps/calculateEnergies.Tpo .deps/calculateEnergies.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT call_cpso.o -MD -MP -MF .deps/call_cpso.Tpo -c -o call_cpso.o call_cpso.cc call_cpso.cc: In function 'State call_cpso(Local_Search*, State, int, int, int, double*, double*, unsigned int, int, double, double, int)': call_cpso.cc:92:16: warning: variable 'min' set but not used [-Wunused-but-set-variable] mv -f .deps/call_cpso.Tpo .deps/call_cpso.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT call_glss.o -MD -MP -MF .deps/call_glss.Tpo -c -o call_glss.o call_glss.cc call_glss.cc: In function 'State call_glss(Global_Search*, Local_Search*, State, unsigned int, unsigned int, int, unsigned int, Molecule*, Boole, Boole, Boole, GridMapSetInfo*, char*, int*)': call_glss.cc:481:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] support.h: In function 'Individual random_ind(int, GridMapSetInfo*)': support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] call_glss.cc:203:16: warning: called from here [-Winline] support.h: In function 'Individual set_ind(int, GridMapSetInfo*, State)': support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] call_glss.cc:248:16: warning: called from here [-Winline] support.h: In function 'State call_glss(Global_Search*, Local_Search*, State, unsigned int, unsigned int, int, unsigned int, Molecule*, Boole, Boole, Boole, GridMapSetInfo*, char*, int*)': support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] call_glss.cc:295:55: warning: called from here [-Winline] mv -f .deps/call_glss.Tpo .deps/call_glss.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT call_gs.o -MD -MP -MF .deps/call_gs.Tpo -c -o call_gs.o call_gs.cc mv -f .deps/call_gs.Tpo .deps/call_gs.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT call_ls.o -MD -MP -MF .deps/call_ls.Tpo -c -o call_ls.o call_ls.cc mv -f .deps/call_ls.Tpo .deps/call_ls.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT changeState.o -MD -MP -MF .deps/changeState.Tpo -c -o changeState.o changeState.cc mv -f .deps/changeState.Tpo .deps/changeState.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT check_header_float.o -MD -MP -MF .deps/check_header_float.Tpo -c -o check_header_float.o check_header_float.cc mv -f .deps/check_header_float.Tpo .deps/check_header_float.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT check_header_int.o -MD -MP -MF .deps/check_header_int.Tpo -c -o check_header_int.o check_header_int.cc mv -f .deps/check_header_int.Tpo .deps/check_header_int.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT check_header_line.o -MD -MP -MF .deps/check_header_line.Tpo -c -o check_header_line.o check_header_line.cc mv -f .deps/check_header_line.Tpo .deps/check_header_line.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT cluster_analysis.o -MD -MP -MF .deps/cluster_analysis.Tpo -c -o cluster_analysis.o cluster_analysis.cc mv -f .deps/cluster_analysis.Tpo .deps/cluster_analysis.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT clmode.o -MD -MP -MF .deps/clmode.Tpo -c -o clmode.o clmode.cc mv -f .deps/clmode.Tpo .deps/clmode.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT cnv_state_to_coords.o -MD -MP -MF .deps/cnv_state_to_coords.Tpo -c -o cnv_state_to_coords.o cnv_state_to_coords.cc mv -f .deps/cnv_state_to_coords.Tpo .deps/cnv_state_to_coords.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT com.o -MD -MP -MF .deps/com.Tpo -c -o com.o com.cc mv -f .deps/com.Tpo .deps/com.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT conformation_sampler.o -MD -MP -MF .deps/conformation_sampler.Tpo -c -o conformation_sampler.o conformation_sampler.cc conformation_sampler.cc: In constructor 'ConformationSampler::ConformationSampler(State)': conformation_sampler.cc:95:10: warning: variable 'base_q' set but not used [-Wunused-but-set-variable] support.h: In destructor 'ConformationSampler::~ConformationSampler()': support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] conformation_sampler.cc:155:1: warning: called from here [-Winline] support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] conformation_sampler.cc:155:1: warning: called from here [-Winline] support.h: In function 'Individual set_ind(GridMapSetInfo*, State)': support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] conformation_sampler.cc:471:16: warning: called from here [-Winline] support.h: In constructor 'ConformationSampler::ConformationSampler(State)': support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] conformation_sampler.cc:73:37: warning: called from here [-Winline] support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] conformation_sampler.cc:113:1: warning: called from here [-Winline] support.h:379:8: warning: inlining failed in call to 'Individual::~Individual()': call is unlikely and code size would grow [-Winline] conformation_sampler.cc:113:1: warning: called from here [-Winline] mv -f .deps/conformation_sampler.Tpo .deps/conformation_sampler.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT dimLibrary.o -MD -MP -MF .deps/dimLibrary.Tpo -c -o dimLibrary.o dimLibrary.cc mv -f .deps/dimLibrary.Tpo .deps/dimLibrary.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT distdepdiel.o -MD -MP -MF .deps/distdepdiel.Tpo -c -o distdepdiel.o distdepdiel.cc mv -f .deps/distdepdiel.Tpo .deps/distdepdiel.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT stateLibrary.o -MD -MP -MF .deps/stateLibrary.Tpo -c -o stateLibrary.o stateLibrary.cc mv -f .deps/stateLibrary.Tpo .deps/stateLibrary.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT readfield.o -MD -MP -MF .deps/readfield.Tpo -c -o readfield.o readfield.cc mv -f .deps/readfield.Tpo .deps/readfield.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT readmap.o -MD -MP -MF .deps/readmap.Tpo -c -o readmap.o readmap.cc mv -f .deps/readmap.Tpo .deps/readmap.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT readPDBQT.o -MD -MP -MF .deps/readPDBQT.Tpo -c -o readPDBQT.o readPDBQT.cc readPDBQT.cc: In function 'Molecule readPDBQT(char*, int, int*, Real (*)[3], Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, Boole*, int*, int*, Real*, Real*, int*, int*, int*, int (*)[2048], Real (*)[3], int*, NonbondParam*, clock_t, tms, char*, int*, int, int*, int, Atom*, char (*)[256], int*)': readPDBQT.cc:133:18: warning: variable 'B_has_conect_records' set but not used [-Wunused-but-set-variable] mv -f .deps/readPDBQT.Tpo .deps/readPDBQT.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT read_parameter_library.o -MD -MP -MF .deps/read_parameter_library.Tpo -c -o read_parameter_library.o read_parameter_library.cc mv -f .deps/read_parameter_library.Tpo .deps/read_parameter_library.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.cc mv -f .deps/eval.Tpo .deps/eval.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT gencau.o -MD -MP -MF .deps/gencau.Tpo -c -o gencau.o gencau.cc mv -f .deps/gencau.Tpo .deps/gencau.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT getrms.o -MD -MP -MF .deps/getrms.Tpo -c -o getrms.o getrms.cc mv -f .deps/getrms.Tpo .deps/getrms.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT get_atom_type.o -MD -MP -MF .deps/get_atom_type.Tpo -c -o get_atom_type.o get_atom_type.cc get_atom_type.cc: In function 'int get_atom_type(char*)': get_atom_type.cc:51:9: warning: variable 'bond_index' set but not used [-Wunused-but-set-variable] mv -f .deps/get_atom_type.Tpo .deps/get_atom_type.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT getInitialState.o -MD -MP -MF .deps/getInitialState.Tpo -c -o getInitialState.o getInitialState.cc mv -f .deps/getInitialState.Tpo .deps/getInitialState.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT getpdbcrds.o -MD -MP -MF .deps/getpdbcrds.Tpo -c -o getpdbcrds.o getpdbcrds.cc mv -f .deps/getpdbcrds.Tpo .deps/getpdbcrds.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -DCHECK_ISNAN -c ./gs.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT initautodock.o -MD -MP -MF .deps/initautodock.Tpo -c -o initautodock.o initautodock.cc mv -f .deps/initautodock.Tpo .deps/initautodock.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT input_state.o -MD -MP -MF .deps/input_state.Tpo -c -o input_state.o input_state.cc mv -f .deps/input_state.Tpo .deps/input_state.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT investigate.o -MD -MP -MF .deps/investigate.Tpo -c -o investigate.o investigate.cc mv -f .deps/investigate.Tpo .deps/investigate.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT linpack.o -MD -MP -MF .deps/linpack.Tpo -c -o linpack.o linpack.cc mv -f .deps/linpack.Tpo .deps/linpack.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT ls.o -MD -MP -MF .deps/ls.Tpo -c -o ls.o ls.cc mv -f .deps/ls.Tpo .deps/ls.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT mapping.o -MD -MP -MF .deps/mapping.Tpo -c -o mapping.o mapping.cc mv -f .deps/mapping.Tpo .deps/mapping.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT minmeanmax.o -MD -MP -MF .deps/minmeanmax.Tpo -c -o minmeanmax.o minmeanmax.cc minmeanmax.cc: In function 'void minmeanmax(FILE*, Population&, int, GridMapSetInfo*)': minmeanmax.cc:56:76: warning: variable 'best' set but not used [-Wunused-but-set-variable] mv -f .deps/minmeanmax.Tpo .deps/minmeanmax.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT mkNewState.o -MD -MP -MF .deps/mkNewState.Tpo -c -o mkNewState.o mkNewState.cc mv -f .deps/mkNewState.Tpo .deps/mkNewState.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT mkTorTree.o -MD -MP -MF .deps/mkTorTree.Tpo -c -o mkTorTree.o mkTorTree.cc mv -f .deps/mkTorTree.Tpo .deps/mkTorTree.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT mkRandomState.o -MD -MP -MF .deps/mkRandomState.Tpo -c -o mkRandomState.o mkRandomState.cc mv -f .deps/mkRandomState.Tpo .deps/mkRandomState.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT nonbonds.o -MD -MP -MF .deps/nonbonds.Tpo -c -o nonbonds.o nonbonds.cc In file included from nonbonds.cc:35:0: mdist.h: In function 'void mdist()': mdist.h:89:5: warning: operation on 'mindist[0][0]' may be undefined [-Wsequence-point] mdist.h:89:34: warning: operation on 'maxdist[0][0]' may be undefined [-Wsequence-point] mdist.h:96:5: warning: operation on 'mindist[1][1]' may be undefined [-Wsequence-point] mdist.h:96:36: warning: operation on 'maxdist[1][1]' may be undefined [-Wsequence-point] In file included from nonbonds.cc:35:0: mdist.h:102:5: warning: operation on 'mindist[2][2]' may be undefined [-Wsequence-point] mdist.h:102:34: warning: operation on 'maxdist[2][2]' may be undefined [-Wsequence-point] mdist.h:107:5: warning: operation on 'mindist[3][3]' may be undefined [-Wsequence-point] mdist.h:107:33: warning: operation on 'maxdist[3][3]' may be undefined [-Wsequence-point] mdist.h:111:5: warning: operation on 'mindist[4][4]' may be undefined [-Wsequence-point] mdist.h:111:33: warning: operation on 'maxdist[4][4]' may be undefined [-Wsequence-point] mdist.h:114:5: warning: operation on 'mindist[5][5]' may be undefined [-Wsequence-point] mdist.h:114:33: warning: operation on 'maxdist[5][5]' may be undefined [-Wsequence-point] mdist.h:116:5: warning: operation on 'mindist[6][6]' may be undefined [-Wsequence-point] mdist.h:116:33: warning: operation on 'maxdist[6][6]' may be undefined [-Wsequence-point] mv -f .deps/nonbonds.Tpo .deps/nonbonds.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT openfile.o -MD -MP -MF .deps/openfile.Tpo -c -o openfile.o openfile.cc mv -f .deps/openfile.Tpo .deps/openfile.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT output_state.o -MD -MP -MF .deps/output_state.Tpo -c -o output_state.o output_state.cc mv -f .deps/output_state.Tpo .deps/output_state.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT parse_dpf_line.o -MD -MP -MF .deps/parse_dpf_line.Tpo -c -o parse_dpf_line.o parse_dpf_line.cc mv -f .deps/parse_dpf_line.Tpo .deps/parse_dpf_line.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT parse_param_line.o -MD -MP -MF .deps/parse_param_line.Tpo -c -o parse_param_line.o parse_param_line.cc mv -f .deps/parse_param_line.Tpo .deps/parse_param_line.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT parse_PDBQT_line.o -MD -MP -MF .deps/parse_PDBQT_line.Tpo -c -o parse_PDBQT_line.o parse_PDBQT_line.cc mv -f .deps/parse_PDBQT_line.Tpo .deps/parse_PDBQT_line.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT parse_trj_line.o -MD -MP -MF .deps/parse_trj_line.Tpo -c -o parse_trj_line.o parse_trj_line.cc mv -f .deps/parse_trj_line.Tpo .deps/parse_trj_line.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT parsetypes.o -MD -MP -MF .deps/parsetypes.Tpo -c -o parsetypes.o parsetypes.cc mv -f .deps/parsetypes.Tpo .deps/parsetypes.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT print_2x.o -MD -MP -MF .deps/print_2x.Tpo -c -o print_2x.o print_2x.cc mv -f .deps/print_2x.Tpo .deps/print_2x.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT print_atomic_energies.o -MD -MP -MF .deps/print_atomic_energies.Tpo -c -o print_atomic_energies.o print_atomic_energies.cc mv -f .deps/print_atomic_energies.Tpo .deps/print_atomic_energies.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT print_avsfld.o -MD -MP -MF .deps/print_avsfld.Tpo -c -o print_avsfld.o print_avsfld.cc mv -f .deps/print_avsfld.Tpo .deps/print_avsfld.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT writePDBQT.o -MD -MP -MF .deps/writePDBQT.Tpo -c -o writePDBQT.o writePDBQT.cc writePDBQT.cc: In function 'void writePDBQT(int, FourByteLong*, char*, char*, Real*, State, int, Real*, Real*, int, char (*)[128], Real (*)[3], Real*, Real*, Real*, Real*, Real*, int, Real, Real (*)[3], int (*)[2048], Real (*)[3], NonbondParam*, EnergyTables*, int*, int, Boole, MapType (*)[128][128][16], int, int*, Boole, Real, const ParameterEntry*, Real, GridMapSetInfo*, int, char (*)[256], Boole, Boole, Unbound_Model)': writePDBQT.cc:106:10: warning: variable 'e_inter' set but not used [-Wunused-but-set-variable] writePDBQT.cc:107:10: warning: variable 'e_intra_lig' set but not used [-Wunused-but-set-variable] writePDBQT.cc:108:10: warning: variable 'e_intra_rec' set but not used [-Wunused-but-set-variable] mv -f .deps/writePDBQT.Tpo .deps/writePDBQT.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT print_rem.o -MD -MP -MF .deps/print_rem.Tpo -c -o print_rem.o print_rem.cc mv -f .deps/print_rem.Tpo .deps/print_rem.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT printdate.o -MD -MP -MF .deps/printdate.Tpo -c -o printdate.o printdate.cc mv -f .deps/printdate.Tpo .deps/printdate.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT printEnergies.o -MD -MP -MF .deps/printEnergies.Tpo -c -o printEnergies.o printEnergies.cc mv -f .deps/printEnergies.Tpo .deps/printEnergies.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT printhms.o -MD -MP -MF .deps/printhms.Tpo -c -o printhms.o printhms.cc mv -f .deps/printhms.Tpo .deps/printhms.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT prClusterHist.o -MD -MP -MF .deps/prClusterHist.Tpo -c -o prClusterHist.o prClusterHist.cc mv -f .deps/prClusterHist.Tpo .deps/prClusterHist.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT prInitialState.o -MD -MP -MF .deps/prInitialState.Tpo -c -o prInitialState.o prInitialState.cc mv -f .deps/prInitialState.Tpo .deps/prInitialState.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT prTorConList.o -MD -MP -MF .deps/prTorConList.Tpo -c -o prTorConList.o prTorConList.cc mv -f .deps/prTorConList.Tpo .deps/prTorConList.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT qmultiply.o -MD -MP -MF .deps/qmultiply.Tpo -c -o qmultiply.o qmultiply.cc mv -f .deps/qmultiply.Tpo .deps/qmultiply.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT qtransform.o -MD -MP -MF .deps/qtransform.Tpo -c -o qtransform.o qtransform.cc mv -f .deps/qtransform.Tpo .deps/qtransform.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT quicksort.o -MD -MP -MF .deps/quicksort.Tpo -c -o quicksort.o quicksort.cc mv -f .deps/quicksort.Tpo .deps/quicksort.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT ranlib.o -MD -MP -MF .deps/ranlib.Tpo -c -o ranlib.o ranlib.cc mv -f .deps/ranlib.Tpo .deps/ranlib.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT rep.o -MD -MP -MF .deps/rep.Tpo -c -o rep.o rep.cc mv -f .deps/rep.Tpo .deps/rep.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT scauchy.o -MD -MP -MF .deps/scauchy.Tpo -c -o scauchy.o scauchy.cc mv -f .deps/scauchy.Tpo .deps/scauchy.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT setflags.o -MD -MP -MF .deps/setflags.Tpo -c -o setflags.o setflags.cc mv -f .deps/setflags.Tpo .deps/setflags.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT simanneal.o -MD -MP -MF .deps/simanneal.Tpo -c -o simanneal.o simanneal.cc mv -f .deps/simanneal.Tpo .deps/simanneal.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT sort_enrg.o -MD -MP -MF .deps/sort_enrg.Tpo -c -o sort_enrg.o sort_enrg.cc mv -f .deps/sort_enrg.Tpo .deps/sort_enrg.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT stack.o -MD -MP -MF .deps/stack.Tpo -c -o stack.o stack.cc mv -f .deps/stack.Tpo .deps/stack.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT stop.o -MD -MP -MF .deps/stop.Tpo -c -o stop.o stop.cc mv -f .deps/stop.Tpo .deps/stop.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT strindex.o -MD -MP -MF .deps/strindex.Tpo -c -o strindex.o strindex.cc mv -f .deps/strindex.Tpo .deps/strindex.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT success.o -MD -MP -MF .deps/success.Tpo -c -o success.o success.cc mv -f .deps/success.Tpo .deps/success.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.cc mv -f .deps/support.Tpo .deps/support.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT swap.o -MD -MP -MF .deps/swap.Tpo -c -o swap.o swap.cc mv -f .deps/swap.Tpo .deps/swap.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT timesys.o -MD -MP -MF .deps/timesys.Tpo -c -o timesys.o timesys.cc mv -f .deps/timesys.Tpo .deps/timesys.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT timesyshms.o -MD -MP -MF .deps/timesyshms.Tpo -c -o timesyshms.o timesyshms.cc mv -f .deps/timesyshms.Tpo .deps/timesyshms.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT torNorVec.o -MD -MP -MF .deps/torNorVec.Tpo -c -o torNorVec.o torNorVec.cc mv -f .deps/torNorVec.Tpo .deps/torNorVec.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT torsion.o -MD -MP -MF .deps/torsion.Tpo -c -o torsion.o torsion.cc mv -f .deps/torsion.Tpo .deps/torsion.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT trilinterp.o -MD -MP -MF .deps/trilinterp.Tpo -c -o trilinterp.o trilinterp.cc mv -f .deps/trilinterp.Tpo .deps/trilinterp.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT usage.o -MD -MP -MF .deps/usage.Tpo -c -o usage.o usage.cc mv -f .deps/usage.Tpo .deps/usage.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT weedbonds.o -MD -MP -MF .deps/weedbonds.Tpo -c -o weedbonds.o weedbonds.cc weedbonds.cc: In function 'void weedbonds(int, char (*)[5], int*, int, int (*)[2048], int (*)[2048], int*, NonbondParam*, int, int*)': weedbonds.cc:181:120: warning: suggest parentheses around '&&' within '||' [-Wparentheses] weedbonds.cc:198:120: warning: suggest parentheses around '&&' within '||' [-Wparentheses] weedbonds.cc:215:120: warning: suggest parentheses around '&&' within '||' [-Wparentheses] mv -f .deps/weedbonds.Tpo .deps/weedbonds.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT warn_bad_file.o -MD -MP -MF .deps/warn_bad_file.Tpo -c -o warn_bad_file.o warn_bad_file.cc mv -f .deps/warn_bad_file.Tpo .deps/warn_bad_file.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT coliny.o -MD -MP -MF .deps/coliny.Tpo -c -o coliny.o coliny.cc mv -f .deps/coliny.Tpo .deps/coliny.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT eintcal.o -MD -MP -MF .deps/eintcal.Tpo -c -o eintcal.o eintcal.cc mv -f .deps/eintcal.Tpo .deps/eintcal.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT eintcalPrint.o -MD -MP -MF .deps/eintcalPrint.Tpo -c -o eintcalPrint.o eintcalPrint.cc mv -f .deps/eintcalPrint.Tpo .deps/eintcalPrint.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT intnbtable.o -MD -MP -MF .deps/intnbtable.Tpo -c -o intnbtable.o intnbtable.cc mv -f .deps/intnbtable.Tpo .deps/intnbtable.Po g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT nbe.o -MD -MP -MF .deps/nbe.Tpo -c -o nbe.o nbe.cc mv -f .deps/nbe.Tpo .deps/nbe.Po rm -f libad.a ar cru libad.a alea.o analysis.o atom_parameter_manager.o banner.o bestpdb.o calculateEnergies.o call_cpso.o call_glss.o call_gs.o call_ls.o changeState.o check_header_float.o check_header_int.o check_header_line.o cluster_analysis.o clmode.o cnv_state_to_coords.o com.o conformation_sampler.o dimLibrary.o distdepdiel.o stateLibrary.o readfield.o readmap.o readPDBQT.o read_parameter_library.o eval.o gencau.o getrms.o get_atom_type.o getInitialState.o getpdbcrds.o gs.o initautodock.o input_state.o investigate.o linpack.o ls.o mapping.o minmeanmax.o mkNewState.o mkTorTree.o mkRandomState.o nonbonds.o openfile.o output_state.o parse_dpf_line.o parse_param_line.o parse_PDBQT_line.o parse_trj_line.o parsetypes.o print_2x.o print_atomic_energies.o print_avsfld.o writePDBQT.o print_rem.o printdate.o printEnergies.o printhms.o prClusterHist.o prInitialState.o prTorConList.o qmultiply.o qtransform.o quicksort.o ranlib.o rep.o scauchy.o setflags.o simanneal.o sort_enrg.o stack.o stop.o strindex.o success.o support.o swap.o timesys.o timesyshms.o torNorVec.o torsion.o trilinterp.o usage.o weedbonds.o warn_bad_file.o coliny.o eintcal.o eintcalPrint.o intnbtable.o nbe.o ranlib libad.a g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc main.cc: In function 'int main(int, char**)': main.cc:222:6: warning: variable 'timeSeedIsSet' set but not used [-Wunused-but-set-variable] main.cc:274:6: warning: variable 'etotal' set but not used [-Wunused-but-set-variable] main.cc:359:7: warning: variable 'B_found_ligand_types' set but not used [-Wunused-but-set-variable] main.cc:360:7: warning: variable 'B_found_autodock_parameter_version' set but not used [-Wunused-but-set-variable] main.cc:419:5: warning: variable 'atoms_outside' set but not used [-Wunused-but-set-variable] mv -f .deps/main.Tpo .deps/main.Po g++ -O3 -Wall -Wno-write-strings -Wall -g -O2 -Winline -finline-functions -Wl,--as-needed -o autodock4 main.o libad.a -lm make[2]: Leaving directory `/«PKGBUILDDIR»/autodock' make[1]: Leaving directory `/«PKGBUILDDIR»/autodock' touch build-arch-stamp fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_prep -s dh_installdirs -s for d in autodock autogrid; do \ /usr/bin/make -C $d DESTDIR=/«PKGBUILDDIR»/debian/$d install; \ done make[1]: Entering directory `/«PKGBUILDDIR»/autodock' /usr/bin/make install-am make[2]: Entering directory `/«PKGBUILDDIR»/autodock' make[3]: Entering directory `/«PKGBUILDDIR»/autodock' /bin/mkdir -p '/«PKGBUILDDIR»/debian/autodock/usr/bin' /usr/bin/install -c autodock4 '/«PKGBUILDDIR»/debian/autodock/usr/bin' make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/autodock' make[2]: Leaving directory `/«PKGBUILDDIR»/autodock' make[1]: Leaving directory `/«PKGBUILDDIR»/autodock' make[1]: Entering directory `/«PKGBUILDDIR»/autogrid' /usr/bin/make install-am make[2]: Entering directory `/«PKGBUILDDIR»/autogrid' make[3]: Entering directory `/«PKGBUILDDIR»/autogrid' /bin/mkdir -p '/«PKGBUILDDIR»/debian/autogrid/usr/bin' /usr/bin/install -c autogrid4 '/«PKGBUILDDIR»/debian/autogrid/usr/bin' make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/autogrid' make[2]: Leaving directory `/«PKGBUILDDIR»/autogrid' make[1]: Leaving directory `/«PKGBUILDDIR»/autogrid' dh_install -s /usr/bin/make -f debian/rules DH_OPTIONS=-s binary-common make[1]: Entering directory `/«PKGBUILDDIR»' dh_testdir dh_testroot dh_installchangelogs dh_installdocs dh_installexamples dh_installman dh_link dh_strip dh_compress dh_fixperms dh_makeshlibs dh_installdeb dh_shlibdeps dpkg-shlibdeps: warning: debian/autodock/usr/bin/autodock4 contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/autogrid/usr/bin/autogrid4 contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package `autodock' in `../autodock_4.2.3-2_armhf.deb'. dpkg-deb: building package `autogrid' in `../autogrid_4.2.3-2_armhf.deb'. make[1]: Leaving directory `/«PKGBUILDDIR»' dpkg-genchanges -B -mbuildd >../autodocksuite_4.2.3-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build autodocksuite-4.2.3 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120504-2020 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ autodocksuite_4.2.3-2_armhf.changes: ──────────────────────────────────── Format: 1.8 Date: Sun, 04 Sep 2011 00:01:02 +0200 Source: autodocksuite Binary: autodock autogrid autodock-test autogrid-test autodock-getdata Architecture: armhf Version: 4.2.3-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Steffen Moeller Description: autodock - analysis of ligand binding to protein structure autodock-getdata - instructions for getData to collect compounds autodock-test - test files for AutoDock autogrid - pre-calculate binding of ligands to their receptor autogrid-test - test files for AutoGrid Changes: autodocksuite (4.2.3-2) unstable; urgency=low . * Recompilation with gcc-4.6 * Yet no link time optimisation because of compiler errors * Added package with download instructions for getData * Rendering debian/rules more sensitive to build errors Checksums-Sha1: 53a41b36fd8ca952e1f48495f26af335c9242351 178232 autodock_4.2.3-2_armhf.deb bda8574d7613c209be9fcbc0537b4ee17daee59c 39698 autogrid_4.2.3-2_armhf.deb Checksums-Sha256: 48322bf7445271dc986b67ae70a23def1c40c15266ed1995689617fef7920dd1 178232 autodock_4.2.3-2_armhf.deb ea22b432b3fab208de9debf6f682cd46ae877adeb87af79ff258d7ae63d97245 39698 autogrid_4.2.3-2_armhf.deb Files: 0ca1a9974e46fadc0731564763cadd6c 178232 science optional autodock_4.2.3-2_armhf.deb d879593248a0637d1984b6cd346b5ee5 39698 science optional autogrid_4.2.3-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ autodock_4.2.3-2_armhf.deb ────────────────────────── new debian package, version 2.0. size 178232 bytes: control archive= 1508 bytes. 965 bytes, 21 lines control 609 bytes, 9 lines md5sums 1068 bytes, 42 lines * postinst #!/bin/sh Package: autodock Source: autodocksuite Version: 4.2.3-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 372 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0) Suggests: autogrid, autodocktools Section: science Priority: optional Homepage: http://autodock.scripps.edu/ Description: analysis of ligand binding to protein structure AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account. . The AutoDock program performs the docking of the ligand to a set of grids describing the target protein. AutoGrid pre-calculates these grids. drwxr-xr-x root/root 0 2012-05-04 20:19 ./ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/doc/autodock/ -rw-r--r-- root/root 1737 2010-01-26 16:41 ./usr/share/doc/autodock/README -rw-r--r-- root/root 1431 2012-05-04 20:15 ./usr/share/doc/autodock/note_from_upstream.txt -rw-r--r-- root/root 1642 2012-05-04 20:15 ./usr/share/doc/autodock/changelog.Debian.gz -rw-r--r-- root/root 289 2009-05-08 15:07 ./usr/share/doc/autodock/AUTHORS -rw-r--r-- root/root 2069 2012-05-04 20:15 ./usr/share/doc/autodock/copyright -rw-r--r-- root/root 2054 2012-05-04 20:15 ./usr/share/doc/autodock/README.Debian -rw-r--r-- root/root 3177 2009-06-01 15:40 ./usr/share/doc/autodock/NEWS.gz drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/man/man1/ -rw-r--r-- root/root 1519 2012-05-04 20:19 ./usr/share/man/man1/autodock4.1.gz drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/bin/ -rwxr-xr-x root/root 328408 2012-05-04 20:19 ./usr/bin/autodock4 autogrid_4.2.3-2_armhf.deb ────────────────────────── new debian package, version 2.0. size 39698 bytes: control archive= 896 bytes. 853 bytes, 21 lines control 458 bytes, 7 lines md5sums Package: autogrid Source: autodocksuite Version: 4.2.3-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 108 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0) Suggests: autodock, autodocktools Enhances: autodock Section: science Priority: optional Homepage: http://autodock.scripps.edu/ Description: pre-calculate binding of ligands to their receptor The AutoDockSuite addresses the molecular analysis of the docking of a smaller chemical compounds to their receptors of known three-dimensional structure. . The AutoGrid program performs pre-calculations for the docking of a ligand to a set of grids that describe the effect that the protein has on point charges. The effect of these forces on the ligand is then analysed by the AutoDock program. drwxr-xr-x root/root 0 2012-05-04 20:19 ./ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/doc/autogrid/ -rw-r--r-- root/root 2381 2009-05-29 13:53 ./usr/share/doc/autogrid/README -rw-r--r-- root/root 1642 2012-05-04 20:15 ./usr/share/doc/autogrid/changelog.Debian.gz -rw-r--r-- root/root 63 2007-04-30 23:40 ./usr/share/doc/autogrid/AUTHORS -rw-r--r-- root/root 2069 2012-05-04 20:15 ./usr/share/doc/autogrid/copyright -rw-r--r-- root/root 3177 2009-06-01 15:41 ./usr/share/doc/autogrid/NEWS.gz drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/share/man/man1/ -rw-r--r-- root/root 2010 2012-05-04 20:19 ./usr/share/man/man1/autogrid4.1.gz drwxr-xr-x root/root 0 2012-05-04 20:19 ./usr/bin/ -rwxr-xr-x root/root 61516 2012-05-04 20:19 ./usr/bin/autogrid4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autoconf* automake* autotools-dev* bsdmainutils* csh* debhelper* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libbsd0* libcroco3* libffi5* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2* m4* man-db* po-debconf* sbuild-build-depends-autodocksuite-dummy* sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 26 to remove and 0 not upgraded. After this operation, 28.9 MB disk space will be freed. (Reading database ... 12370 files and directories currently installed.) Removing sbuild-build-depends-autodocksuite-dummy ... Removing automake ... Removing autoconf ... Purging configuration files for autoconf ... Removing autotools-dev ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing csh ... Purging configuration files for csh ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libbsd0:armhf ... Purging configuration files for libbsd0:armhf ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing m4 ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 18228 Build-Time: 313 Distribution: testing Install-Time: 55 Job: autodocksuite_4.2.3-2 Package: autodocksuite Package-Time: 385 Source-Version: 4.2.3-2 Space: 18228 Status: successful Version: 4.2.3-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120504-2020 Build needed 00:06:25, 18228k disc space