sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build03.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librg-blast-parser-perl 0.02-2 (armhf) 05 May 2012 23:41 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librg-blast-parser-perl Version: 0.02-2 Source Version: 0.02-2 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-eEp8q_/librg-blast-parser-perl-0.02' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-eEp8q_' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-83ae4b07-6ecf-4900-9cb2-92f58d4feb22' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librg-blast-parser-perl' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librg-blast-parser-perl/trunk/ Need to get 18.6 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main librg-blast-parser-perl 0.02-2 (dsc) [2215 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main librg-blast-parser-perl 0.02-2 (tar) [11.6 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main librg-blast-parser-perl 0.02-2 (diff) [4852 B] Fetched 18.6 kB in 0s (348 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-ihCE0v/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.0-2), perl Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.0-2), perl dpkg-deb: building package `sbuild-build-depends-librg-blast-parser-perl-dummy' in `/«BUILDDIR»/resolver-VzDEmT/apt_archive/sbuild-build-depends-librg-blast-parser-perl-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librg-blast-parser-perl build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libextutils-xspp-perl libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 librostlab-blast0 librostlab-blast0-dev librostlab3 librostlab3-dev libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff librostlab-blast-doc librostlab-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libextutils-xspp-perl libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 librostlab-blast0 librostlab-blast0-dev librostlab3 librostlab3-dev libunistring0 libxml2 man-db po-debconf sbuild-build-depends-librg-blast-parser-perl-dummy 0 upgraded, 24 newly installed, 0 to remove and 3 not upgraded. Need to get 456 kB/9805 kB of archives. After this operation, 27.5 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main libextutils-xspp-perl all 0.1602-3 [193 kB] Get:2 http://repo.raspbian.lan/raspbian/ testing/main librostlab-blast0 armhf 1.0.0-2 [109 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main librostlab3 armhf 1.0.20-1 [5676 B] Get:4 http://repo.raspbian.lan/raspbian/ testing/main librostlab3-dev armhf 1.0.20-1 [13.6 kB] Get:5 http://repo.raspbian.lan/raspbian/ testing/main librostlab-blast0-dev armhf 1.0.0-2 [136 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 456 kB in 0s (4656 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... 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Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package libextutils-xspp-perl. Unpacking libextutils-xspp-perl (from .../libextutils-xspp-perl_0.1602-3_all.deb) ... Selecting previously unselected package librostlab-blast0. Unpacking librostlab-blast0 (from .../librostlab-blast0_1.0.0-2_armhf.deb) ... Selecting previously unselected package librostlab3. Unpacking librostlab3 (from .../librostlab3_1.0.20-1_armhf.deb) ... Selecting previously unselected package librostlab3-dev. Unpacking librostlab3-dev (from .../librostlab3-dev_1.0.20-1_armhf.deb) ... Selecting previously unselected package librostlab-blast0-dev. Unpacking librostlab-blast0-dev (from .../librostlab-blast0-dev_1.0.0-2_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-librg-blast-parser-perl-dummy. Unpacking sbuild-build-depends-librg-blast-parser-perl-dummy (from .../sbuild-build-depends-librg-blast-parser-perl-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up libextutils-xspp-perl (0.1602-3) ... Setting up librostlab-blast0 (1.0.0-2) ... Setting up librostlab3 (1.0.20-1) ... Setting up librostlab3-dev (1.0.20-1) ... Setting up librostlab-blast0-dev (1.0.0-2) ... Setting up sbuild-build-depends-librg-blast-parser-perl-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libextutils-xspp-perl_0.1602-3 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 librostlab-blast0_1.0.0-2 librostlab-blast0-dev_1.0.0-2 librostlab3_1.0.20-1 librostlab3-dev_1.0.20-1 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librg-blast-parser-perl-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Apr 11 07:21:36 2012 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librg-blast-parser-perl_0.02-2.dsc dpkg-source: info: extracting librg-blast-parser-perl in librg-blast-parser-perl-0.02 dpkg-source: info: unpacking librg-blast-parser-perl_0.02.orig.tar.gz dpkg-source: info: unpacking librg-blast-parser-perl_0.02-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-83ae4b07-6ecf-4900-9cb2-92f58d4feb22 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package librg-blast-parser-perl dpkg-buildpackage: source version 0.02-2 dpkg-source --before-build librg-blast-parser-perl-0.02 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh --parallel clean dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel rm -f debian/librg-blast-parser-perl.substvars rm -f debian/librg-blast-parser-perl.*.debhelper rm -rf debian/librg-blast-parser-perl/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build-arch dh --parallel build-arch dh_testdir -a -O--parallel dh_auto_configure -a -O--parallel perl Makefile.PL INSTALLDIRS=vendor create_packlist=0 Checking if your kit is complete... Warning: the following files are missing in your kit: Parser.bs Parser.c Parser.o t/RG-Blast-Parser.t Please inform the author. 'CREATE_PACKLIST' is not a known MakeMaker parameter name. Writing Makefile for RG::Blast::Parser Writing MYMETA.yml dh_auto_build -a -O--parallel make -j1 make[1]: Entering directory `/«PKGBUILDDIR»' cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) /usr/bin/perl /usr/share/perl/5.14/ExtUtils/xsubpp -C++ -hiertype -noprototypes -typemap /usr/share/perl/5.14/ExtUtils/typemap -typemap perlobject.map -typemap typemap Parser.xs > Parser.xsc && mv Parser.xsc Parser.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -O0 -g -DVERSION=\"0.02\" -DXS_VERSION=\"0.02\" -fPIC "-I/usr/lib/perl/5.14/CORE" Parser.c Running Mkbootstrap for RG::Blast::Parser () chmod 644 Parser.bs rm -f blib/arch/auto/RG/Blast/Parser/Parser.so g++ -shared -L/usr/local/lib -fstack-protector Parser.o -o blib/arch/auto/RG/Blast/Parser/Parser.so \ -lrostlab-blast \ chmod 755 blib/arch/auto/RG/Blast/Parser/Parser.so cp Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs chmod 644 blib/arch/auto/RG/Blast/Parser/Parser.bs Manifying blib/man3/RG::Blast::Parser.3pm make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a -O--parallel make -j1 test make[1]: Entering directory `/«PKGBUILDDIR»' PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/01RG-Blast-Parserload.t .. ok examples/badformat.ali:46.1-7: invalid character 'Q' examples/badformat.ali:46.1-8: invalid character 'u' examples/badformat.ali:46.1-9: invalid character 'e' examples/badformat.ali:46.1-10: invalid character 'r' examples/badformat.ali:46.1-11: invalid character 'y' examples/badformat.ali:46.1-12: invalid character ':' examples/badformat.ali:46.14: syntax error, unexpected INT t/02test.t ................. ok All tests successful. Files=2, Tests=24, 2 wallclock secs ( 0.31 usr 0.04 sys + 0.67 cusr 0.10 csys = 1.12 CPU) Result: PASS make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh --parallel binary-arch dh_testroot -a -O--parallel dh_prep -a -O--parallel rm -f debian/librg-blast-parser-perl.substvars rm -f debian/librg-blast-parser-perl.*.debhelper rm -rf debian/librg-blast-parser-perl/ dh_installdirs -a -O--parallel install -d debian/librg-blast-parser-perl dh_auto_install -a -O--parallel make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/librg-blast-parser-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory `/«PKGBUILDDIR»' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /«PKGBUILDDIR»/debian/librg-blast-parser-perl/usr/lib/perl5/auto/RG/Blast/Parser/Parser.so Installing /«PKGBUILDDIR»/debian/librg-blast-parser-perl/usr/lib/perl5/auto/RG/Blast/Parser/Parser.bs Installing /«PKGBUILDDIR»/debian/librg-blast-parser-perl/usr/lib/perl5/auto/RG/Blast/Parser/autosplit.ix Installing /«PKGBUILDDIR»/debian/librg-blast-parser-perl/usr/lib/perl5/RG/Blast/Parser.pm Installing /«PKGBUILDDIR»/debian/librg-blast-parser-perl/usr/share/man/man3/RG::Blast::Parser.3pm make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a -O--parallel dh_installdocs -a -O--parallel install -g 0 -o 0 -d debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl cp -a README debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl chown -R 0:0 debian/librg-blast-parser-perl/usr/share/doc chmod -R go=rX debian/librg-blast-parser-perl/usr/share/doc chmod -R u\+rw debian/librg-blast-parser-perl/usr/share/doc install -g 0 -o 0 -m 644 -p debian/copyright debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl/copyright dh_installchangelogs -a -O--parallel install -o 0 -g 0 -p -m644 debian/changelog debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl/changelog.Debian install -o 0 -g 0 -p -m644 ./Changes debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl/changelog dh_installexamples -a -O--parallel install -d debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl/examples cp -a examples/badformat.ali debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl/examples cp -a examples/converged.ali debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl/examples cp -a examples/twores.ali debian/librg-blast-parser-perl/usr/share/doc/librg-blast-parser-perl/examples dh_installman -a -O--parallel man --recode UTF-8 ./RG\:\:Blast\:\:Parser\.3pm > RG\:\:Blast\:\:Parser\.3pm\.new chmod 644 RG::Blast::Parser.3pm.new mv -f RG::Blast::Parser.3pm.new RG::Blast::Parser.3pm dh_installcatalogs -a -O--parallel dh_installcron -a -O--parallel dh_installdebconf -a -O--parallel install -o 0 -g 0 -d debian/librg-blast-parser-perl/DEBIAN dh_installemacsen -a -O--parallel dh_installifupdown -a -O--parallel dh_installinfo -a -O--parallel dh_installinit -a -O--parallel dh_installmenu -a -O--parallel dh_installmime -a -O--parallel dh_installmodules -a -O--parallel dh_installlogcheck -a -O--parallel dh_installlogrotate -a -O--parallel dh_installpam -a -O--parallel dh_installppp -a -O--parallel dh_installudev -a -O--parallel dh_installwm -a -O--parallel dh_installxfonts -a -O--parallel dh_installgsettings -a -O--parallel dh_bugfiles -a -O--parallel dh_ucf -a -O--parallel dh_lintian -a -O--parallel dh_gconf -a -O--parallel dh_icons -a -O--parallel dh_perl -a -O--parallel (grep -s -v perl:Depends debian/librg-blast-parser-perl.substvars; echo "perl:Depends=perl (>= 5.14.2-9)") > debian/librg-blast-parser-perl.substvars.new mv debian/librg-blast-parser-perl.substvars.new debian/librg-blast-parser-perl.substvars (grep -s -v perl:Depends debian/librg-blast-parser-perl.substvars; echo "perl:Depends=perl (>= 5.14.2-9), perlapi-5.14.2") > debian/librg-blast-parser-perl.substvars.new mv debian/librg-blast-parser-perl.substvars.new debian/librg-blast-parser-perl.substvars rmdir --ignore-fail-on-non-empty --parents debian/librg-blast-parser-perl/usr/lib/perl5 dh_usrlocal -a -O--parallel dh_link -a -O--parallel dh_compress -a -O--parallel cd debian/librg-blast-parser-perl chmod a-x usr/share/man/man3/RG::Blast::Parser.3pm usr/share/doc/librg-blast-parser-perl/changelog usr/share/doc/librg-blast-parser-perl/examples/converged.ali usr/share/doc/librg-blast-parser-perl/examples/badformat.ali usr/share/doc/librg-blast-parser-perl/examples/twores.ali usr/share/doc/librg-blast-parser-perl/changelog.Debian gzip -9nf usr/share/man/man3/RG::Blast::Parser.3pm usr/share/doc/librg-blast-parser-perl/changelog usr/share/doc/librg-blast-parser-perl/examples/converged.ali usr/share/doc/librg-blast-parser-perl/examples/badformat.ali usr/share/doc/librg-blast-parser-perl/examples/twores.ali usr/share/doc/librg-blast-parser-perl/changelog.Debian cd '/«PKGBUILDDIR»' dh_fixperms -a -O--parallel find debian/librg-blast-parser-perl -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librg-blast-parser-perl ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librg-blast-parser-perl/usr/share/doc -type f ! -regex 'debian/librg-blast-parser-perl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/librg-blast-parser-perl/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/librg-blast-parser-perl/usr/share/man debian/librg-blast-parser-perl/usr/man/ debian/librg-blast-parser-perl/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librg-blast-parser-perl -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librg-blast-parser-perl/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librg-blast-parser-perl/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/librg-blast-parser-perl -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/librg-blast-parser-perl/usr/lib/perl5 debian/librg-blast-parser-perl/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/librg-blast-parser-perl/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip -a -O--parallel strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/librg-blast-parser-perl/usr/lib/perl5/auto/RG/Blast/Parser/Parser.so dh_makeshlibs -a -O--parallel rm -f debian/librg-blast-parser-perl/DEBIAN/shlibs dh_shlibdeps -a -O--parallel dpkg-shlibdeps -Tdebian/librg-blast-parser-perl.substvars debian/librg-blast-parser-perl/usr/lib/perl5/auto/RG/Blast/Parser/Parser.so dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librg-blast-parser-perl/usr/lib/perl5/auto/RG/Blast/Parser/Parser.so was not linked against libgcc_s.so.1 (it uses none of the library's symbols). dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel echo misc:Depends= >> debian/librg-blast-parser-perl.substvars dpkg-gencontrol -ldebian/changelog -Tdebian/librg-blast-parser-perl.substvars -Pdebian/librg-blast-parser-perl chmod 644 debian/librg-blast-parser-perl/DEBIAN/control chown 0:0 debian/librg-blast-parser-perl/DEBIAN/control dh_md5sums -a -O--parallel (cd debian/librg-blast-parser-perl >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/librg-blast-parser-perl/DEBIAN/md5sums chown 0:0 debian/librg-blast-parser-perl/DEBIAN/md5sums dh_builddeb -a -O--parallel dpkg-deb --build debian/librg-blast-parser-perl .. dpkg-deb: building package `librg-blast-parser-perl' in `../librg-blast-parser-perl_0.02-2_armhf.deb'. dpkg-genchanges -B -mbuildd >../librg-blast-parser-perl_0.02-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build librg-blast-parser-perl-0.02 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120505-2344 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ librg-blast-parser-perl_0.02-2_armhf.changes: ───────────────────────────────────────────── Format: 1.8 Date: Wed, 11 Apr 2012 09:19:39 +0200 Source: librg-blast-parser-perl Binary: librg-blast-parser-perl Architecture: armhf Version: 0.02-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Laszlo Kajan Description: librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl Changes: librg-blast-parser-perl (0.02-2) unstable; urgency=low . * [Andreas Tille ] debian/control: Restored control file from Laszlo with better description which I accidentially ignored in the initial upload Checksums-Sha1: dd8300e3e6c992d3c5b67d1271f7f42be3358701 54604 librg-blast-parser-perl_0.02-2_armhf.deb Checksums-Sha256: d23726a51b18c5c15f3c56680f1cc827b745130194f4fb4c60c81940a39f7fdb 54604 librg-blast-parser-perl_0.02-2_armhf.deb Files: 7d2c8e28bf37c8eb5b91331996ee0c67 54604 perl extra librg-blast-parser-perl_0.02-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ librg-blast-parser-perl_0.02-2_armhf.deb ──────────────────────────────────────── new debian package, version 2.0. size 54604 bytes: control archive= 1031 bytes. 716 bytes, 16 lines control 1014 bytes, 12 lines md5sums Package: librg-blast-parser-perl Version: 0.02-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 234 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.1.1), librostlab-blast0, libstdc++6 (>= 4.4.0), perl (>= 5.14.2-9), perlapi-5.14.2 Section: perl Priority: extra Homepage: http://rostlab.org/ Description: very fast NCBI BLAST parser - binding for Perl This package contains Perl binding for a very fast C++ library that parses the default output of NCBI BLAST programs. BLAST results are returned in a convenient hash structure. . Evaluated on a very small test set, this parser is considerably faster than Zerg::Report from libzerg-perl. drwxr-xr-x root/root 0 2012-05-05 23:43 ./ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/share/ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-05 23:44 ./usr/share/man/man3/ -rw-r--r-- root/root 3459 2012-05-05 23:43 ./usr/share/man/man3/RG::Blast::Parser.3pm.gz drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-05 23:44 ./usr/share/doc/librg-blast-parser-perl/ -rw-r--r-- root/root 745 2012-03-29 03:58 ./usr/share/doc/librg-blast-parser-perl/README -rw-r--r-- root/root 300 2012-04-11 00:20 ./usr/share/doc/librg-blast-parser-perl/changelog.Debian.gz -rw-r--r-- root/root 224 2012-03-29 03:58 ./usr/share/doc/librg-blast-parser-perl/changelog.gz -rw-r--r-- root/root 9645 2012-04-04 01:39 ./usr/share/doc/librg-blast-parser-perl/copyright drwxr-xr-x root/root 0 2012-05-05 23:44 ./usr/share/doc/librg-blast-parser-perl/examples/ -rw-r--r-- root/root 1580 2012-03-27 09:26 ./usr/share/doc/librg-blast-parser-perl/examples/converged.ali.gz -rw-r--r-- root/root 1584 2012-03-27 09:26 ./usr/share/doc/librg-blast-parser-perl/examples/badformat.ali.gz -rw-r--r-- root/root 3028 2012-03-27 09:26 ./usr/share/doc/librg-blast-parser-perl/examples/twores.ali.gz drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/lib/perl5/ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/lib/perl5/auto/ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/lib/perl5/auto/RG/ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/lib/perl5/auto/RG/Blast/ drwxr-xr-x root/root 0 2012-05-05 23:44 ./usr/lib/perl5/auto/RG/Blast/Parser/ -rw-r--r-- root/root 142952 2012-05-05 23:44 ./usr/lib/perl5/auto/RG/Blast/Parser/Parser.so -rw-r--r-- root/root 0 2012-05-05 23:43 ./usr/lib/perl5/auto/RG/Blast/Parser/Parser.bs -rw-r--r-- root/root 94 2012-05-05 23:43 ./usr/lib/perl5/auto/RG/Blast/Parser/autosplit.ix drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/lib/perl5/RG/ drwxr-xr-x root/root 0 2012-05-05 23:43 ./usr/lib/perl5/RG/Blast/ -rw-r--r-- root/root 5946 2012-03-29 03:58 ./usr/lib/perl5/RG/Blast/Parser.pm ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libcroco3* libextutils-xspp-perl* libffi5* libglib2.0-0* libmagic1* libpcre3* libpipeline1* librostlab-blast0* librostlab-blast0-dev* librostlab3* librostlab3-dev* libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-librg-blast-parser-perl-dummy* 0 upgraded, 0 newly installed, 25 to remove and 3 not upgraded. After this operation, 27.5 MB disk space will be freed. (Reading database ... 12216 files and directories currently installed.) Removing sbuild-build-depends-librg-blast-parser-perl-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libextutils-xspp-perl ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing librostlab-blast0-dev ... Removing librostlab-blast0 ... Purging configuration files for librostlab-blast0 ... Removing librostlab3-dev ... Removing librostlab3 ... Purging configuration files for librostlab3 ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 1828 Build-Time: 90 Distribution: testing Install-Time: 57 Job: librg-blast-parser-perl_0.02-2 Package: librg-blast-parser-perl Package-Time: 163 Source-Version: 0.02-2 Space: 1828 Status: successful Version: 0.02-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120505-2344 Build needed 00:02:43, 1828k disc space