sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build04.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ r-cran-medadherence 1.02-1 (armhf) 14 Aug 2012 09:49 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: r-cran-medadherence Version: 1.02-1 Source Version: 1.02-1 Distribution: wheezy-staging Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf W: line 7 [wheezy-staging-armhf-sbuild]: Deprecated key ‘script-config’ used I: This option will be removed in the future; please update your configuration W: line 7 [testing-armhf-sbuild]: Deprecated key ‘script-config’ used I: NOTICE: Log filtering will replace 'build/r-cran-medadherence-UmPC1v/r-cran-medadherence-1.02' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/r-cran-medadherence-UmPC1v' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/wheezy-staging-armhf-sbuild-77d886b8-a592-483f-adb4-3d5317d975bb' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://archive.raspbian.lan wheezy-staging InRelease Hit http://archive.raspbian.lan wheezy-staging/main Sources Hit http://archive.raspbian.lan wheezy-staging/main armhf Packages Ign http://archive.raspbian.lan wheezy-staging/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'r-cran-medadherence' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-medadherence/trunk/ Need to get 13.1 kB of source archives. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-medadherence 1.02-1 (dsc) [1401 B] Get:2 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-medadherence 1.02-1 (tar) [9433 B] Get:3 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-medadherence 1.02-1 (diff) [2255 B] Fetched 13.1 kB in 0s (332 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-kVsmMr/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10701 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0), cdbs, r-base-dev Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0), cdbs, r-base-dev dpkg-deb: building package `sbuild-build-depends-r-cran-medadherence-dummy' in `/«BUILDDIR»/resolver-rd8tUf/apt_archive/sbuild-build-depends-r-cran-medadherence-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install r-cran-medadherence build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev sbuild-build-depends-r-cran-medadherence-dummy tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 79 newly installed, 0 to remove and 5 not upgraded. Need to get 0 B/55.2 MB of archives. After this operation, 112 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10701 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-5_armhf.deb) ... Selecting previously unselected package libexpat1:armhf. Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ... 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Unpacking x11-common (from .../x11-common_1%3a7.7+1_all.deb) ... Selecting previously unselected package libice6:armhf. Unpacking libice6:armhf (from .../libice6_2%3a1.0.8-2_armhf.deb) ... Selecting previously unselected package libjpeg8:armhf. Unpacking libjpeg8:armhf (from .../libjpeg8_8d-1_armhf.deb) ... Selecting previously unselected package libthai-data. Unpacking libthai-data (from .../libthai-data_0.1.18-1_all.deb) ... Selecting previously unselected package libthai0:armhf. Unpacking libthai0:armhf (from .../libthai0_0.1.18-1_armhf.deb) ... Selecting previously unselected package libxft2:armhf. Unpacking libxft2:armhf (from .../libxft2_2.3.1-1_armhf.deb) ... Selecting previously unselected package fontconfig. Unpacking fontconfig (from .../fontconfig_2.9.0-7_armhf.deb) ... Selecting previously unselected package libpango1.0-0:armhf. Unpacking libpango1.0-0:armhf (from .../libpango1.0-0_1.30.0-1_armhf.deb) ... Selecting previously unselected package libpaper1:armhf. 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Unpacking r-base-core (from .../r-base-core_2.15.1-4_armhf.deb) ... Selecting previously unselected package r-base-dev. Unpacking r-base-dev (from .../r-base-dev_2.15.1-4_all.deb) ... Selecting previously unselected package sbuild-build-depends-r-cran-medadherence-dummy. Unpacking sbuild-build-depends-r-cran-medadherence-dummy (from .../sbuild-build-depends-r-cran-medadherence-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-2) ... Setting up libxml2:armhf (2.8.0+dfsg1-5) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-7) ... Setting up libfontconfig1:armhf (2.9.0-7) ... Setting up libpixman-1-0:armhf (0.26.0-3) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:armhf (2:1.5.0-1) ... Setting up libxcb-render0:armhf (1.8.1-1) ... Setting up libxcb-shm0:armhf (1.8.1-1) ... Setting up libxrender1:armhf (1:0.9.7-1) ... Setting up libcairo2:armhf (1.12.2-2) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libgfortran3:armhf (4.7.1-2+rpi1) ... Setting up x11-common (1:7.7+1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libthai-data (0.1.18-1) ... Setting up libthai0:armhf (0.1.18-1) ... Setting up libxft2:armhf (2.3.1-1) ... Setting up fontconfig (2.9.0-7) ... Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.30.0-1) ... Setting up libpaper1:armhf (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:armhf (1:8.30-5) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libjbig0:armhf (2.0-2) ... Setting up libtiff4:armhf (3.9.6-7) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-9) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-9) ... Setting up cdbs (0.4.115) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up gfortran-4.6 (4.6.3-8+rpi1) ... Setting up gfortran (4:4.6.3-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode. Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode. Setting up libbz2-dev:armhf (1.0.6-3) ... Setting up libjpeg8-dev:armhf (8d-1) ... Setting up liblapack3 (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode. Setting up liblapack-dev (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode. Setting up libtinfo-dev:armhf (5.9-10) ... Setting up libncurses5-dev (5.9-10) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ... Setting up libpng12-dev (1.2.49-1) ... Setting up libreadline6-dev:armhf (6.2-8) ... Setting up libreadline-dev:armhf (6.2-8) ... Setting up zip (3.0-6) ... Setting up unzip (6.0-7) ... Setting up xdg-utils (1.1.0~rc1+git20111210-6) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up r-base-core (2.15.1-4) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up r-base-dev (2.15.1-4) ... Setting up sbuild-build-depends-r-cran-medadherence-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-8+rpi1 gcc-4.6_4.6.3-8+rpi1 libc6-dev_2.13-33 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 cdbs_0.4.115 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-8+rpi1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 fontconfig_2.9.0-7 fontconfig-config_2.9.0-7 g++_4:4.6.3-7 g++-4.6_4.6.3-8+rpi1 gcc_4:4.6.3-7 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-8+rpi1 gcc-4.6-base_4.6.3-8+rpi1 gcc-4.7-base_4.7.1-2+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gfortran_4:4.6.3-7 gfortran-4.6_4.6.3-8+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.3+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libbz2-dev_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libcairo2_1.12.2-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.5-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfontconfig1_2.9.0-7 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-2+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-2+rpi1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-2+rpi1 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1-5 liblapack3_3.4.1-5 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-2 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-3 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-7 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-5 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12+rpi1 perl-base_5.14.2-12+rpi1 perl-modules_5.14.2-12+rpi1 po-debconf_1.0.16+nmu2 r-base-core_2.15.1-4 r-base-dev_2.15.1-4 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-medadherence-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 unzip_6.0-7 util-linux_2.20.1-5.1 x11-common_1:7.7+1 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20120614-1 zip_3.0-6 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Feb 5 14:06:12 2010 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-cran-medadherence_1.02-1.dsc dpkg-source: info: extracting r-cran-medadherence in r-cran-medadherence-1.02 dpkg-source: info: unpacking r-cran-medadherence_1.02.orig.tar.gz dpkg-source: info: applying r-cran-medadherence_1.02-1.diff.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_ALIAS_NAME=chroot:wheezy-staging-armhf-sbuild SCHROOT_CHROOT_NAME=wheezy-staging-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=wheezy-staging-armhf-sbuild-77d886b8-a592-483f-adb4-3d5317d975bb SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package r-cran-medadherence dpkg-buildpackage: source version 1.02-1 dpkg-source --before-build r-cran-medadherence-1.02 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules dh_testroot /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "reverse-patches" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi for dir in debian/patches ; do \ rm -f $dir/*.log ; \ done dh_clean if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi make[1]: Entering directory `/«PKGBUILDDIR»' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 2.15.1-4)" >> debian/r-cran-medadherence.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'medAdherence' ... ** Creating default NAMESPACE file ** libs make[1]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c cma.c -o cma.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c cmos.c -o cmos.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c csa.c -o csa.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pdc.c -o pdc.o gcc -std=gnu99 -shared -o medAdherence.so cma.o cmos.o csa.o pdc.o -L/usr/lib/R/lib -lR make[1]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Entering directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»/src' installing to /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/lib/R/site-library/medAdherence/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded running .First.lib() for package 'medAdherence' as .onLoad/.onAttach were not found * DONE (medAdherence) rm -vf /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/lib/R/site-library/R.css \ /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/lib/R/site-library/medAdherence/COPYING \ /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/lib/R/site-library/medAdherence/LICENSE.txt if test -f debian/overrides; then \ install -d /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /«PKGBUILDDIR»/debian/r-cran-medadherence/usr/share/lintian/overrides/r-cran-medadherence; \ fi Adding cdbs dependencies to debian/r-cran-medadherence.substvars dh_installdirs -pr-cran-medadherence dh_installdocs -pr-cran-medadherence dh_installexamples -pr-cran-medadherence dh_installman -pr-cran-medadherence dh_installinfo -pr-cran-medadherence dh_installmenu -pr-cran-medadherence dh_installcron -pr-cran-medadherence dh_installinit -pr-cran-medadherence dh_installdebconf -pr-cran-medadherence dh_installemacsen -pr-cran-medadherence dh_installcatalogs -pr-cran-medadherence dh_installpam -pr-cran-medadherence dh_installlogrotate -pr-cran-medadherence dh_installlogcheck -pr-cran-medadherence dh_installchangelogs -pr-cran-medadherence dh_installudev -pr-cran-medadherence dh_lintian -pr-cran-medadherence dh_bugfiles -pr-cran-medadherence dh_install -pr-cran-medadherence dh_link -pr-cran-medadherence dh_installmime -pr-cran-medadherence dh_installgsettings -pr-cran-medadherence dh_strip -pr-cran-medadherence dh_compress -pr-cran-medadherence dh_fixperms -pr-cran-medadherence dh_makeshlibs -pr-cran-medadherence dh_installdeb -pr-cran-medadherence dh_perl -pr-cran-medadherence dh_shlibdeps -pr-cran-medadherence dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-medadherence/usr/lib/R/site-library/medAdherence/libs/medAdherence.so was not linked against libR.so (it uses none of the library's symbols). dh_gencontrol -pr-cran-medadherence dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package r-cran-medadherence: unused substitution variable ${R:Depends} dh_md5sums -pr-cran-medadherence dh_builddeb -pr-cran-medadherence dpkg-deb: building package `r-cran-medadherence' in `../r-cran-medadherence_1.02-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../r-cran-medadherence_1.02-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build r-cran-medadherence-1.02 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120814-0953 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ r-cran-medadherence_1.02-1_armhf.changes: ───────────────────────────────────────── Format: 1.8 Date: Thu, 19 Nov 2009 15:38:39 +0100 Source: r-cran-medadherence Binary: r-cran-medadherence Architecture: armhf Version: 1.02-1 Distribution: wheezy-staging Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: r-cran-medadherence - GNU R Medication Adherence: Commonly Used Definitions Closes: 557200 Changes: r-cran-medadherence (1.02-1) unstable; urgency=low . * Initial release (closes: #557200) Remark about previous rejection: - The data file in question was removed. - Upstream forgot to include the GPL COPYRIGHT file but has given explicite permission to include it in a private mail (see copyright file). Checksums-Sha1: 5fbdced451d4bc3820a2e7f15d280141e8e006ba 51972 r-cran-medadherence_1.02-1_armhf.deb Checksums-Sha256: b2a00ff530d6cdaa1adf2c8995b90787692b2b4e08bfa1be5cf5a6c1311586d1 51972 r-cran-medadherence_1.02-1_armhf.deb Files: a177cedebc2a8dcae6c588a9b4c95d3c 51972 gnu-r optional r-cran-medadherence_1.02-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-cran-medadherence_1.02-1_armhf.deb ──────────────────────────────────── new debian package, version 2.0. size 51972 bytes: control archive=1392 bytes. 968 bytes, 20 lines control 1707 bytes, 20 lines md5sums Package: r-cran-medadherence Version: 1.02-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 116 Depends: libc6 (>= 2.13-28), r-base-core Section: gnu-r Priority: optional Homepage: http://cran.r-project.org/web/packages/medAdherence/ Description: GNU R Medication Adherence: Commonly Used Definitions Adherence is defined as "the extent to which a person's behavior coincides with medical or health advice", which is very important, for both clinical researchers and physicians, to identify the treatment effect of a specific medication(s). . A variety of measures have been developed to calculate the medication adherence. Definitions and methods to address adherence differ greatly in public literature. Choosing which definition should be determined by overall study goals. This package provides the functions to calculate medication adherence based on commonly used definitions. drwxr-xr-x root/root 0 2012-08-14 09:53 ./ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/R/ -rw-r--r-- root/root 383 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/R/medAdherence -rw-r--r-- root/root 421 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/R/medAdherence.rdx -rw-r--r-- root/root 8458 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/R/medAdherence.rdb drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/Meta/ -rw-r--r-- root/root 682 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/Meta/Rd.rds -rw-r--r-- root/root 653 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/Meta/package.rds -rw-r--r-- root/root 645 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/Meta/hsearch.rds -rw-r--r-- root/root 269 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/Meta/links.rds -rw-r--r-- root/root 561 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/DESCRIPTION drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/help/ -rw-r--r-- root/root 258 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/help/AnIndex -rw-r--r-- root/root 188 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/help/aliases.rds -rw-r--r-- root/root 448 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/help/medAdherence.rdx -rw-r--r-- root/root 205 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/help/paths.rds -rw-r--r-- root/root 31615 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/help/medAdherence.rdb -rw-r--r-- root/root 918 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/INDEX -rw-r--r-- root/root 121 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/NAMESPACE drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/libs/ -rw-r--r-- root/root 4692 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/libs/medAdherence.so drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/html/ -rw-r--r-- root/root 2542 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/html/00Index.html -rw-r--r-- root/root 1179 2012-08-14 09:53 ./usr/lib/R/site-library/medAdherence/html/R.css drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/share/ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-14 09:53 ./usr/share/doc/r-cran-medadherence/ -rw-r--r-- root/root 307 2012-08-14 09:52 ./usr/share/doc/r-cran-medadherence/changelog.Debian.gz -rw-r--r-- root/root 1909 2012-08-14 09:52 ./usr/share/doc/r-cran-medadherence/copyright ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* cdbs* debhelper* file* fontconfig* fontconfig-config* gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text* intltool-debian* libasprintf0c2* libblas-dev* libblas3* libbz2-dev* libcairo2* libcroco3* libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgettextpo0* libgfortran3* libglib2.0-0* libice6* libjbig0* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev* sbuild-build-depends-core-dummy* sbuild-build-depends-r-cran-medadherence-dummy* tcl8.5* tk8.5* ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev* 0 upgraded, 0 newly installed, 80 to remove and 5 not upgraded. After this operation, 112 MB disk space will be freed. (Reading database ... 14929 files and directories currently installed.) Removing sbuild-build-depends-r-cran-medadherence-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing r-base-dev ... Removing cdbs ... Removing file ... Removing r-base-core ... Purging configuration files for r-base-core ... Removing libpango1.0-0:armhf ... Purging configuration files for libpango1.0-0:armhf ... Removing fontconfig ... Purging configuration files for fontconfig ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing libxft2:armhf ... Purging configuration files for libxft2:armhf ... Removing libcairo2:armhf ... Purging configuration files for libcairo2:armhf ... Removing libfontconfig1:armhf ... Purging configuration files for libfontconfig1:armhf ... Removing fontconfig-config ... 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Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 440 Build-Time: 89 Distribution: wheezy-staging Host Architecture: armhf Install-Time: 152 Job: r-cran-medadherence_1.02-1 Machine Architecture: armhf Package: r-cran-medadherence Package-Time: 261 Source-Version: 1.02-1 Space: 440 Status: successful Version: 1.02-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120814-0953 Build needed 00:04:21, 440k disc space