protein-comparison-tool

##### Parent Project

- biojava

##### Project Documentation

- Project Information
  - About
  - Project Team
  - Dependency Information
  - Dependency Management
  - Project Plugins
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  - Issue Tracking
  - Source Repository
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  - Project License
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## Project Dependencies

### compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId | ArtifactId | Version | Type | License
--- | --- | --- | --- | ---
org.biojava | biojava3-alignment | 3.0.5 | jar | GNU LGPL v2
org.biojava | biojava3-core | 3.0.5 | jar | GNU LGPL v2
org.biojava | biojava3-structure | 3.0.5 | jar | GNU LGPL v2
org.biojava | biojava3-structure-gui | 3.0.5 | jar | GNU LGPL v2

### test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId | ArtifactId | Version | Type | License
--- | --- | --- | --- | ---
junit | junit | 4.10 | jar | Common Public License Version 1.0

## Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

### compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId | ArtifactId | Version | Type | License
--- | --- | --- | --- | ---
javaws | javaws | 1.0 | jar | -
jmolapplet | JmolApplet | 12.0.22 | jar | -
org | forester | 1.005 | jar | -
org.biojava | biojava3-phylo | 3.0.5 | jar | GNU LGPL v2

### test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId | ArtifactId | Version | Type | License
--- | --- | --- | --- | ---
org.hamcrest | hamcrest-core | 1.1 | jar | BSD style

## Project Dependency Graph

### Dependency Tree

- org.biojava:protein-comparison-tool:jar:3.0.5

  protein-comparison-tool
  Description: BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. URL: http://source.rcsb.org Project License: GNU LGPL v2

  - junit:junit:jar:4.10 (test)

    JUnit
    Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

    - org.hamcrest:hamcrest-core:jar:1.1 (test)

      Hamcrest Core
      Description: There is currently no description associated with this project. Project License: BSD style

  - org.biojava:biojava3-alignment:jar:3.0.5 (compile)

    biojava3-alignment
    Description: BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. URL: http://maven.apache.org Project License: GNU LGPL v2

    - org.biojava:biojava3-phylo:jar:3.0.5 (compile)

      biojava3-phylo
      Description: BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. URL: http://www.biojava.org Project License: GNU LGPL v2

    - org:forester:jar:1.005 (compile)

      forester
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  - org.biojava:biojava3-core:jar:3.0.5 (compile)

    biojava3-core
    Description: BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. URL: http://www.biojava.org Project License: GNU LGPL v2

  - org.biojava:biojava3-structure:jar:3.0.5 (compile)

    biojava3-structure
    Description: The protein structure modules of BioJava. URL: http://www.biojava.org/biojava3-structure Project License: GNU LGPL v2

  - org.biojava:biojava3-structure-gui:jar:3.0.5 (compile)

    biojava3-structure-gui
    Description: BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. URL: http://www.biojava.org Project License: GNU LGPL v2

    - javaws:javaws:jar:1.0 (compile)

      javaws
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    - jmolapplet:JmolApplet:jar:12.0.22 (compile)

      JmolApplet
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

## Licenses

GNU LGPL v2: biojava3-alignment, biojava3-core, biojava3-phylo, biojava3-structure, biojava3-structure-gui, protein-comparison-tool

BSD style: Hamcrest Core

Unknown: JmolApplet, forester, javaws

Common Public License Version 1.0: JUnit

## Dependency File Details

Filename | Size | Entries | Classes | Packages | JDK Rev | Debug | Sealed
--- | --- | --- | --- | --- | --- | --- | ---
javaws-1.0.jar | 849.07 kB | 545 | 456 | 19 | 1.2 | debug | -
JmolApplet-12.0.22.jar | 1.90 MB | 662 | 569 | 68 | 1.4 | debug | sealed
Total | Size | Entries | Classes | Packages | JDK Rev | Debug | Sealed
2 | 2.73 MB | 1,207 | 1,025 | 87 | 1.4 | 2 | 1
compile: 2 | compile: 2.73 MB | compile: 1,207 | compile: 1,025 | compile: 87 | - | compile: 2 | compile: 1

## Dependency Repository Locations

Repo ID | URL | Release | Snapshot
--- | --- | --- | ---
central | http://repo.maven.apache.org/maven2 | Yes | -

Repository locations for each of the Dependencies.

Artifact | nexus
--- | ---
javaws:javaws:jar:1.0 |
jmolapplet:JmolApplet:jar:12.0.22 |
junit:junit:jar:4.10 |
org:forester:jar:1.005 |
org.biojava:biojava3-alignment:jar:3.0.5 |
org.biojava:biojava3-core:jar:3.0.5 |
org.biojava:biojava3-phylo:jar:3.0.5 |
org.biojava:biojava3-structure:jar:3.0.5 |
org.biojava:biojava3-structure-gui:jar:3.0.5 |
org.hamcrest:hamcrest-core:jar:1.1 |
Total | nexus
10 (compile: 8, test: 2) | 10