sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build07.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ r-bioc-hilbertvis 1.14.0-1 (armhf) 14 Aug 2012 10:56 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: r-bioc-hilbertvis Version: 1.14.0-1 Source Version: 1.14.0-1 Distribution: wheezy-staging Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf W: line 7 [testing-armhf-sbuild]: Deprecated key ‘script-config’ used I: This option will be removed in the future; please update your configuration W: line 7 [wheezy-staging-armhf-sbuild]: Deprecated key ‘script-config’ used I: NOTICE: Log filtering will replace 'build/r-bioc-hilbertvis-L_lv9L/r-bioc-hilbertvis-1.14.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/r-bioc-hilbertvis-L_lv9L' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/wheezy-staging-armhf-sbuild-34375aec-0ecb-4fa4-bd19-f8d13b8f8193' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://archive.raspbian.lan wheezy-staging InRelease [9334 B] Get:2 http://archive.raspbian.lan wheezy-staging/main Sources [6227 kB] Get:3 http://archive.raspbian.lan wheezy-staging/main armhf Packages [7310 kB] Ign http://archive.raspbian.lan wheezy-staging/main Translation-en Fetched 13.5 MB in 42s (319 kB/s) Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'r-bioc-hilbertvis' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/R/r-bioc-hilbertvis/trunk/ Need to get 1044 kB of source archives. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-bioc-hilbertvis 1.14.0-1 (dsc) [1511 B] Get:2 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-bioc-hilbertvis 1.14.0-1 (tar) [1040 kB] Get:3 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-bioc-hilbertvis 1.14.0-1 (diff) [2897 B] Fetched 1044 kB in 0s (3275 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-eE0hwS/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10701 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-cran-lattice Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-cran-lattice dpkg-deb: building package `sbuild-build-depends-r-bioc-hilbertvis-dummy' in `/«BUILDDIR»/resolver-kP_9lO/apt_archive/sbuild-build-depends-r-bioc-hilbertvis-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install r-bioc-hilbertvis build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev r-cran-lattice tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev r-cran-lattice sbuild-build-depends-r-bioc-hilbertvis-dummy tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 80 newly installed, 0 to remove and 5 not upgraded. Need to get 712 kB/55.9 MB of archives. After this operation, 113 MB of additional disk space will be used. Get:1 http://archive.raspbian.lan/raspbian/ wheezy-staging/main r-cran-lattice armhf 0.20-6-1 [712 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 712 kB in 0s (3366 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10701 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ... Selecting previously unselected package libxml2:armhf. 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Setting up libmagic1:armhf (5.11-2) ... Setting up libxml2:armhf (2.8.0+dfsg1-5) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-7) ... Setting up libfontconfig1:armhf (2.9.0-7) ... Setting up libpixman-1-0:armhf (0.26.0-3) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:armhf (2:1.5.0-1) ... Setting up libxcb-render0:armhf (1.8.1-1) ... Setting up libxcb-shm0:armhf (1.8.1-1) ... Setting up libxrender1:armhf (1:0.9.7-1) ... Setting up libcairo2:armhf (1.12.2-2) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libdatrie1:armhf (0.2.5-3) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libgfortran3:armhf (4.7.1-2+rpi1) ... Setting up x11-common (1:7.7+1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libthai-data (0.1.18-1) ... Setting up libthai0:armhf (0.1.18-1) ... Setting up libxft2:armhf (2.3.1-1) ... Setting up fontconfig (2.9.0-7) ... Regenerating fonts cache... done. Setting up libpango1.0-0:armhf (1.30.0-1) ... Setting up libpaper1:armhf (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:armhf (1:8.30-5) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libjbig0:armhf (2.0-2) ... Setting up libtiff4:armhf (3.9.6-7) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-9) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-9) ... Setting up cdbs (0.4.115) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up gfortran-4.6 (4.6.3-8+rpi1) ... Setting up gfortran (4:4.6.3-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode. Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode. Setting up libbz2-dev:armhf (1.0.6-3) ... Setting up libjpeg8-dev:armhf (8d-1) ... Setting up liblapack3 (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode. Setting up liblapack-dev (3.4.1-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode. Setting up libtinfo-dev:armhf (5.9-10) ... Setting up libncurses5-dev (5.9-10) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ... Setting up libpng12-dev (1.2.49-1) ... Setting up libreadline6-dev:armhf (6.2-8) ... Setting up libreadline-dev:armhf (6.2-8) ... Setting up zip (3.0-6) ... Setting up unzip (6.0-7) ... Setting up xdg-utils (1.1.0~rc1+git20111210-6) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up r-base-core (2.15.1-4) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up r-base-dev (2.15.1-4) ... Setting up r-cran-lattice (0.20-6-1) ... Setting up sbuild-build-depends-r-bioc-hilbertvis-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-8+rpi1 gcc-4.6_4.6.3-8+rpi1 libc6-dev_2.13-33 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 cdbs_0.4.115 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-8+rpi1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 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libgcc1_1:4.7.1-2+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-2+rpi1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-2+rpi1 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1-5 liblapack3_3.4.1-5 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-2 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-3 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-7 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-5 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12+rpi1 perl-base_5.14.2-12+rpi1 perl-modules_5.14.2-12+rpi1 po-debconf_1.0.16+nmu2 r-base-core_2.15.1-4 r-base-dev_2.15.1-4 r-cran-lattice_0.20-6-1 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-hilbertvis-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 unzip_6.0-7 util-linux_2.20.1-5.1 x11-common_1:7.7+1 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20120614-1 zip_3.0-6 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Apr 19 12:56:15 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-bioc-hilbertvis_1.14.0-1.dsc dpkg-source: info: extracting r-bioc-hilbertvis in r-bioc-hilbertvis-1.14.0 dpkg-source: info: unpacking r-bioc-hilbertvis_1.14.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-hilbertvis_1.14.0-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_ALIAS_NAME=chroot:wheezy-staging-armhf-sbuild SCHROOT_CHROOT_NAME=wheezy-staging-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=wheezy-staging-armhf-sbuild-34375aec-0ecb-4fa4-bd19-f8d13b8f8193 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package r-bioc-hilbertvis dpkg-buildpackage: source version 1.14.0-1 dpkg-source --before-build r-bioc-hilbertvis-1.14.0 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch test -x debian/rules mkdir -p "." fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 2.15.1-4)" >> debian/r-bioc-hilbertvis.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'HilbertVis' ... ** libs make[1]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c hilbert.c -o hilbert.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c make_wiggle_vector.c -o make_wiggle_vector.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c shrink_vector.c -o shrink_vector.o gcc -std=gnu99 -shared -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -L/usr/lib/R/lib -lR make[1]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Entering directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»/src' installing to /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/lib/R/site-library/HilbertVis/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'HilbertVis.Rnw' ** testing if installed package can be loaded * DONE (HilbertVis) rm -vf /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/lib/R/site-library/R.css \ /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/lib/R/site-library/HilbertVis/COPYING \ /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/lib/R/site-library/HilbertVis/LICENSE.txt if test -f debian/overrides; then \ install -d /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /«PKGBUILDDIR»/debian/r-bioc-hilbertvis/usr/share/lintian/overrides/r-bioc-hilbertvis; \ fi Adding cdbs dependencies to debian/r-bioc-hilbertvis.substvars dh_installdirs -pr-bioc-hilbertvis dh_installdocs -pr-bioc-hilbertvis dh_installexamples -pr-bioc-hilbertvis dh_installman -pr-bioc-hilbertvis dh_installinfo -pr-bioc-hilbertvis dh_installmenu -pr-bioc-hilbertvis dh_installcron -pr-bioc-hilbertvis dh_installinit -pr-bioc-hilbertvis dh_installdebconf -pr-bioc-hilbertvis dh_installemacsen -pr-bioc-hilbertvis dh_installcatalogs -pr-bioc-hilbertvis dh_installpam -pr-bioc-hilbertvis dh_installlogrotate -pr-bioc-hilbertvis dh_installlogcheck -pr-bioc-hilbertvis dh_installchangelogs -pr-bioc-hilbertvis dh_installudev -pr-bioc-hilbertvis dh_lintian -pr-bioc-hilbertvis dh_bugfiles -pr-bioc-hilbertvis dh_install -pr-bioc-hilbertvis dh_link -pr-bioc-hilbertvis dh_installmime -pr-bioc-hilbertvis dh_installgsettings -pr-bioc-hilbertvis dh_strip -pr-bioc-hilbertvis dh_compress -pr-bioc-hilbertvis dh_fixperms -pr-bioc-hilbertvis dh_makeshlibs -pr-bioc-hilbertvis dh_installdeb -pr-bioc-hilbertvis dh_perl -pr-bioc-hilbertvis dh_shlibdeps -pr-bioc-hilbertvis dh_gencontrol -pr-bioc-hilbertvis dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -pr-bioc-hilbertvis dh_builddeb -pr-bioc-hilbertvis dpkg-deb: building package `r-bioc-hilbertvis' in `../r-bioc-hilbertvis_1.14.0-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../r-bioc-hilbertvis_1.14.0-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build r-bioc-hilbertvis-1.14.0 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120814-1101 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ r-bioc-hilbertvis_1.14.0-1_armhf.changes: ───────────────────────────────────────── Format: 1.8 Date: Thu, 19 Apr 2012 14:42:44 +0200 Source: r-bioc-hilbertvis Binary: r-bioc-hilbertvis Architecture: armhf Version: 1.14.0-1 Distribution: wheezy-staging Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: r-bioc-hilbertvis - GNU R package to visualise long vector data Changes: r-bioc-hilbertvis (1.14.0-1) unstable; urgency=low . [ Charles Plessy ] * Track stable version (debian/watch). * Corrected VCS URLs (debian/control). . [ Andreas Tille ] * New upstream version * debian/watch: Make sure source will be really downloaded Checksums-Sha1: 43fe6b8ef99111806253d35f17f949a336417b2b 1052658 r-bioc-hilbertvis_1.14.0-1_armhf.deb Checksums-Sha256: ca1ba2017046aed98cdfe43140c7bea46a641e549f213aaca834310b68de6b0b 1052658 r-bioc-hilbertvis_1.14.0-1_armhf.deb Files: fce22dd18a943aee7520fab7534afb32 1052658 math optional r-bioc-hilbertvis_1.14.0-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-bioc-hilbertvis_1.14.0-1_armhf.deb ──────────────────────────────────── new debian package, version 2.0. size 1052658 bytes: control archive=1834 bytes. 946 bytes, 19 lines control 2840 bytes, 34 lines md5sums Package: r-bioc-hilbertvis Version: 1.14.0-1 Architecture: armhf Maintainer: Debian-Med Packaging Team Installed-Size: 1456 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), r-base-core (>= 2.15.1-4), r-cran-lattice Section: math Priority: optional Homepage: http://www.ebi.ac.uk/huber-srv/hilbert Description: GNU R package to visualise long vector data This tool allows one to display very long data vectors in a space-efficient manner, by organising it along a 2D Hilbert curve. The user can then visually judge the large scale structure and distribution of features simultaenously with the rough shape and intensity of individual features. . In bioinformatics, a typical use case is ChIP-Chip and ChIP-Seq, or basically all the kinds of genomic data, that are conventionally displayed as quantitative track ("wiggle data") in genome browsers such as those provided by Ensembl or UCSC. drwxr-xr-x root/root 0 2012-08-14 11:01 ./ drwxr-xr-x root/root 0 2012-08-14 11:01 ./usr/ drwxr-xr-x root/root 0 2012-08-14 11:01 ./usr/share/ drwxr-xr-x root/root 0 2012-08-14 11:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-14 11:01 ./usr/share/doc/r-bioc-hilbertvis/ -rw-r--r-- root/root 872 2012-04-19 05:49 ./usr/share/doc/r-bioc-hilbertvis/changelog.Debian.gz -rw-r--r-- root/root 289 2012-03-23 15:34 ./usr/share/doc/r-bioc-hilbertvis/README.test -rw-r--r-- root/root 1262 2012-03-23 15:30 ./usr/share/doc/r-bioc-hilbertvis/copyright drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/ drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/R/ drwxr-xr-x root/root 0 2012-08-14 11:01 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/ drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/html/ -rw-r--r-- root/root 1179 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/html/R.css -rw-r--r-- root/root 2327 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/html/00Index.html drwxr-xr-x root/root 0 2012-08-14 11:01 ./usr/lib/R/site-library/HilbertVis/libs/ -rw-r--r-- root/root 9852 2012-08-14 11:01 ./usr/lib/R/site-library/HilbertVis/libs/HilbertVis.so drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/ -rw-r--r-- root/root 18109 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/HilbertVis.Rnw -rw-r--r-- root/root 23955 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/ThreeChTest.pdf -rw-r--r-- root/root 1159 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/index.html -rw-r--r-- root/root 4056 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/hilbert.bib -rw-r--r-- root/root 290 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/Makefile -rw-r--r-- root/root 1194832 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/HilbertVis.pdf -rw-r--r-- root/root 70376 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/HilbertDisplay_GUI.pdf -rw-r--r-- root/root 3693 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/HilbertVis.R -rw-r--r-- root/root 19232 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/HilbertVis.tex -rw-r--r-- root/root 42370 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/doc/simon2.bst drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/help/ -rw-r--r-- root/root 279 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/help/AnIndex -rw-r--r-- root/root 166 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/help/aliases.rds -rw-r--r-- root/root 343 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/help/HilbertVis.rdx -rw-r--r-- root/root 187 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/help/paths.rds -rw-r--r-- root/root 17418 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/help/HilbertVis.rdb -rw-r--r-- root/root 540 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/DESCRIPTION -rw-r--r-- root/root 842 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/INDEX drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/R/ -rw-r--r-- root/root 398 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/R/HilbertVis.rdx -rw-r--r-- root/root 383 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/R/HilbertVis -rw-r--r-- root/root 7004 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/R/HilbertVis.rdb -rw-r--r-- root/root 329 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/NAMESPACE drwxr-xr-x root/root 0 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/Meta/ -rw-r--r-- root/root 394 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/Meta/nsInfo.rds -rw-r--r-- root/root 727 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/Meta/package.rds -rw-r--r-- root/root 598 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/Meta/Rd.rds -rw-r--r-- root/root 228 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/Meta/links.rds -rw-r--r-- root/root 233 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/Meta/vignette.rds -rw-r--r-- root/root 602 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/Meta/hsearch.rds -rw-r--r-- root/root 598 2012-08-14 11:00 ./usr/lib/R/site-library/HilbertVis/CITATION ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* cdbs* debhelper* file* fontconfig* fontconfig-config* gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text* intltool-debian* libasprintf0c2* libblas-dev* libblas3* libbz2-dev* libcairo2* libcroco3* libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgettextpo0* libgfortran3* libglib2.0-0* libice6* libjbig0* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev* r-cran-lattice* sbuild-build-depends-core-dummy* sbuild-build-depends-r-bioc-hilbertvis-dummy* tcl8.5* tk8.5* ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev* 0 upgraded, 0 newly installed, 81 to remove and 5 not upgraded. After this operation, 113 MB disk space will be freed. (Reading database ... 14986 files and directories currently installed.) Removing sbuild-build-depends-r-bioc-hilbertvis-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing r-base-dev ... Removing cdbs ... Removing file ... Removing r-cran-lattice ... Removing r-base-core ... Purging configuration files for r-base-core ... Removing libpango1.0-0:armhf ... Purging configuration files for libpango1.0-0:armhf ... Removing fontconfig ... Purging configuration files for fontconfig ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing libxft2:armhf ... Purging configuration files for libxft2:armhf ... Removing libcairo2:armhf ... Purging configuration files for libcairo2:armhf ... Removing libfontconfig1:armhf ... Purging configuration files for libfontconfig1:armhf ... 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Removing zlib1g-dev:armhf ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 4152 Build-Time: 70 Distribution: wheezy-staging Host Architecture: armhf Install-Time: 148 Job: r-bioc-hilbertvis_1.14.0-1 Machine Architecture: armhf Package: r-bioc-hilbertvis Package-Time: 281 Source-Version: 1.14.0-1 Space: 4152 Status: successful Version: 1.14.0-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120814-1101 Build needed 00:04:41, 4152k disc space