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interfaces.dcm2nii

Dcm2nii

Link to code

Wraps command dcm2nii

Inputs:

[Mandatory]
source_names: (an existing file name)
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal
        immediately, `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

[Optional]
anonymize: (a boolean)
args: (a string)
        Additional parameters to the command
config_file: (an existing file name)
convert_all_pars: (a boolean)
environ: (a dictionary with keys which are a value of type 'str' and
         with values which are a value of type 'str', nipype default value:
         {})
        Environment variables
gzip_output: (a boolean, nipype default value: False)
id_in_filename: (a boolean, nipype default value: False)
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the
        interface fails to run
nii_output: (a boolean, nipype default value: True)
output_dir: (an existing directory name)
reorient: (a boolean)
reorient_and_crop: (a boolean)
source_names: (an existing file name)
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal
        immediately, `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

Outputs:

bvals: (an existing file name)
bvecs: (an existing file name)
converted_files: (an existing file name)
reoriented_and_cropped_files: (an existing file name)
reoriented_files: (an existing file name)