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elastix::TransformRigidityPenalty< TElastix > Class Template Reference

#include <elxTransformRigidityPenaltyTerm.h>

Inheritance diagram for elastix::TransformRigidityPenalty< TElastix >:
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Collaboration diagram for elastix::TransformRigidityPenalty< TElastix >:
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Public Types

typedef
Superclass1::CoefficientImageType 
CoefficientImageType
 
typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass2::ConfigurationType 
ConfigurationType
 
typedef itk::SmartPointer
< const Self
ConstPointer
 
typedef
Superclass1::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass1::DerivativeType DerivativeType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass1::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass1::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass1::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass1::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass1::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass1::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass1::FixedImageType FixedImageType
 
typedef
Superclass1::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass1::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass1::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass1::GradientImageType 
GradientImageType
 
typedef
Superclass1::GradientPixelType 
GradientPixelType
 
typedef
Superclass1::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass1::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass1::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass1::ImageSamplerType 
ImageSamplerType
 
typedef Superclass1::InputPointType InputPointType
 
typedef
Superclass1::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass1::InterpolatorType 
InterpolatorType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::MeasureType MeasureType
 
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass1::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass1::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass1::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass1::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass1::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass1::MovingImageRegionType 
MovingImageRegionType
 
typedef
Superclass1::MovingImageType 
MovingImageType
 
typedef
Superclass1::OutputPointType 
OutputPointType
 
typedef Superclass1::ParametersType ParametersType
 
typedef itk::SmartPointer< SelfPointer
 
typedef Superclass1::RealType RealType
 
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass2::RegistrationType 
RegistrationType
 
typedef TransformRigidityPenalty Self
 
typedef
itk::TransformRigidityPenaltyTerm
< typename MetricBase
< TElastix >::FixedImageType,
double
Superclass1
 
typedef MetricBase< TElastix > Superclass2
 
typedef TimerType::Pointer TimerPointer
 
typedef tmr::Timer TimerType
 
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass1::TransformParametersType 
TransformParametersType
 
typedef
Superclass1::TransformPointer 
TransformPointer
 
typedef Superclass1::TransformType TransformType
 
- Public Types inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef
BSplineTransformType::Pointer 
BSplineTransformPointer
 
typedef
AdvancedBSplineDeformableTransform
< ScalarType,
FixedImageDimension, 3 > 
BSplineTransformType
 
typedef ImageRegionIterator
< CoefficientImageType
CoefficientImageIteratorType
 
typedef
CoefficientImageType::Pointer 
CoefficientImagePointer
 
typedef
CoefficientImageType::SpacingType 
CoefficientImageSpacingType
 
typedef
BSplineTransformType::ImageType 
CoefficientImageType
 
typedef
AdvancedCombinationTransform
< ScalarType,
FixedImageDimension > 
CombinationTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::DerivativeValueType 
DerivativeValueType
 
typedef DilateFilterType::Pointer DilateFilterPointer
 
typedef
GrayscaleDilateImageFilter
< RigidityImageType,
RigidityImageType,
StructuringElementType
DilateFilterType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImagePointer 
FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
BSplineTransformType::SpacingType 
GridSpacingType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InternalMatrixType 
InternalMatrixType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef
Superclass::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
 
typedef
Superclass::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImagePointer 
MovingImagePointer
 
typedef Superclass::MovingImageType MovingImageType
 
typedef NeighborhoodIterator
< CoefficientImageType
NeighborhoodIteratorType
 
typedef NeighborhoodType::SizeType NeighborhoodSizeType
 
typedef Neighborhood
< ScalarType,
itkGetStaticConstMacro(FixedImageDimension) > 
NeighborhoodType
 
typedef
NeighborhoodOperatorImageFilter
< CoefficientImageType,
CoefficientImageType
NOIFType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef
NeighborhoodIteratorType::RadiusType 
RadiusType
 
typedef Superclass::RealType RealType
 
typedef
RigidityImageType::IndexType 
RigidityImageIndexType
 
typedef ImageRegionIterator
< RigidityImageType
RigidityImageIteratorType
 
typedef RigidityImageType::Pointer RigidityImagePointer
 
typedef
RigidityImageType::PointType 
RigidityImagePointType
 
typedef
RigidityImageType::RegionType 
RigidityImageRegionType
 
typedef CoefficientImageType RigidityImageType
 
typedef
RigidityImageType::PixelType 
RigidityPixelType
 
typedef Superclass::ScalarType ScalarType
 
typedef
TransformRigidityPenaltyTerm 
Self
 
typedef
StructuringElementType::RadiusType 
SERadiusType
 
typedef
Superclass::SpatialHessianType 
SpatialHessianType
 
typedef
Superclass::SpatialJacobianType 
SpatialJacobianType
 
typedef
BinaryBallStructuringElement
< RigidityPixelType,
itkGetStaticConstMacro(FixedImageDimension) > 
StructuringElementType
 
typedef TransformPenaltyTerm
< MetricBase< TElastix >
::FixedImageType, double
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::DerivativeValueType 
DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImagePointer 
FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
TransformType::InternalMatrixType 
InternalMatrixType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef
TransformType::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
 
typedef
TransformType::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImagePointer 
MovingImagePointer
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef double ScalarType
 
typedef TransformPenaltyTerm Self
 
typedef
TransformType::SpatialHessianType 
SpatialHessianType
 
typedef
TransformType::SpatialJacobianType 
SpatialJacobianType
 
typedef
AdvancedImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::FixedImageType
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::AdvancedTransformType 
TransformType
 
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef FixedImageType::PixelType FixedImagePixelType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef vnl_sparse_matrix
< HessianValueType
HessianType
 
typedef DerivativeType::ValueType HessianValueType
 
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
 
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
 
typedef ImageSamplerType::Pointer ImageSamplerPointer
 
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
 
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef MovingImageType::RegionType MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef TransformType::ScalarType ScalarType
 
typedef AdvancedImageToImageMetric Self
 
typedef ImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::FixedImageType
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
itk::AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
 
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass::ConfigurationType 
ConfigurationType
 
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef itk::PointSet
< CoordinateRepresentationType,
FixedImageDimension,
itk::DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
 
typedef FixedImageType::PointType FixedPointType
 
typedef FixedPointType::ValueType FixedPointValueType
 
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
 
typedef
itk::SingleValuedCostFunction 
ITKBaseType
 
typedef ITKBaseType::MeasureType MeasureType
 
typedef
ElastixType::MovingImageType 
MovingImageType
 
typedef itk::PointSet
< CoordinateRepresentationType,
MovingImageDimension,
itk::DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
 
typedef MovingImageType::PointType MovingPointType
 
typedef MovingPointType::ValueType MovingPointValueType
 
typedef
Superclass::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass::RegistrationType 
RegistrationType
 
typedef MetricBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
 
typedef
ElastixType::ConfigurationType 
ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef
ElastixType::RegistrationBaseType 
RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void AfterEachIteration (void)
 
virtual void BeforeEachResolution (void)
 
virtual void BeforeRegistration (void)
 
 elxClassNameMacro ("TransformRigidityPenalty")
 
virtual const char * GetClassName () const
 
virtual void Initialize (void) throw (itk::ExceptionObject)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SelectNewSamples (void)
 
- Public Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
void CheckUseAndCalculationBooleans (void)
 
void FillRigidityCoefficientImage (const ParametersType &parameters) const
 
virtual void GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const
 
virtual const MeasureTypeGetLinearityConditionGradientMagnitude ()
 
virtual const MeasureTypeGetLinearityConditionValue ()
 
virtual ScalarType GetLinearityConditionWeight ()
 
virtual const MeasureTypeGetOrthonormalityConditionGradientMagnitude ()
 
virtual const MeasureTypeGetOrthonormalityConditionValue ()
 
virtual ScalarType GetOrthonormalityConditionWeight ()
 
virtual const MeasureTypeGetPropernessConditionGradientMagnitude ()
 
virtual const MeasureTypeGetPropernessConditionValue ()
 
virtual ScalarType GetPropernessConditionWeight ()
 
virtual MeasureType GetValue (const ParametersType &parameters) const
 
virtual void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (ImageDimension, unsigned int, FixedImageType::ImageDimension)
 
virtual void SetBSplineTransform (BSplineTransformType *_arg)
 
virtual void SetCalculateLinearityCondition (bool _arg)
 
virtual void SetCalculateOrthonormalityCondition (bool _arg)
 
virtual void SetCalculatePropernessCondition (bool _arg)
 
virtual void SetDilateRigidityImages (bool _arg)
 
virtual void SetDilationRadiusMultiplier (CoordinateRepresentationType _arg)
 
virtual void SetFixedRigidityImage (RigidityImageType *_arg)
 
virtual void SetLinearityConditionWeight (ScalarType _arg)
 
virtual void SetMovingRigidityImage (RigidityImageType *_arg)
 
virtual void SetOrthonormalityConditionWeight (ScalarType _arg)
 
virtual void SetPropernessConditionWeight (ScalarType _arg)
 
virtual void SetUseFixedRigidityImage (bool _arg)
 
virtual void SetUseLinearityCondition (bool _arg)
 
virtual void SetUseMovingRigidityImage (bool _arg)
 
virtual void SetUseOrthonormalityCondition (bool _arg)
 
virtual void SetUsePropernessCondition (bool _arg)
 
- Public Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler (void) const
 
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
 
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
const AdvancedTransformTypeGetTransform (void) const
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
 
virtual bool GetAdvancedMetricUseImageSampler (void) const
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual MeasureType GetCurrentExactMetricValue (void) const
 
virtual bool GetShowExactMetricValue (void) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeRegistrationBase (void)
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
static Pointer New ()
 

Protected Member Functions

 TransformRigidityPenalty ()
 
virtual ~TransformRigidityPenalty ()
 
- Protected Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
void PrintSelf (std::ostream &os, Indent indent) const
 
 TransformRigidityPenaltyTerm ()
 
virtual ~TransformRigidityPenaltyTerm ()
 
- Protected Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
virtual bool CheckForBSplineTransform (BSplineTransformPointer &bspline) const
 
 TransformPenaltyTerm ()
 
virtual ~TransformPenaltyTerm ()
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
 AdvancedImageToImageMetric ()
 
virtual void CheckForAdvancedTransform (void)
 
virtual void CheckForBSplineInterpolator (void)
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
 
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
 
virtual void InitializeLimiters (void)
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
 
virtual ~AdvancedImageToImageMetric ()
 
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 
 MetricBase ()
 
virtual ~MetricBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

void operator= (const Self &)
 
 TransformRigidityPenalty (const Self &)
 

Additional Inherited Members

- Protected Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef
BSplineTransformType::Pointer 
BSplineTransformPointer
 
typedef
AdvancedBSplineDeformableTransform
< ScalarType,
FixedImageDimension, 3 > 
BSplineTransformType
 
typedef
AdvancedCombinationTransform
< ScalarType,
FixedImageDimension > 
CombinationTransformType
 
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
 
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
 
typedef
Superclass::FixedImagePointType 
FixedImagePointType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
float
BSplineInterpolatorFloatType
 
typedef
BSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
BSplineInterpolatorType
 
typedef GradientImageFilter
< MovingImageType, RealType,
RealType
CentralDifferenceGradientFilterType
 
typedef FixedImageType::IndexType FixedImageIndexType
 
typedef
FixedImageIndexType::IndexValueType 
FixedImageIndexValueType
 
typedef
TransformType::InputPointType 
FixedImagePointType
 
typedef
InterpolatorType::ContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
BSplineInterpolatorType::CovariantVectorType 
MovingImageDerivativeType
 
typedef MovingImageType::IndexType MovingImageIndexType
 
typedef
TransformType::OutputPointType 
MovingImagePointType
 
typedef
AdvancedTransformType::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
ReducedDimensionBSplineInterpolateImageFunction
< MovingImageType,
CoordinateRepresentationType,
double
ReducedBSplineInterpolatorType
 
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
 
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
 
typedef ITKBaseType::ParametersType ParametersType
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
AdvancedTransformType::Pointer m_AdvancedTransform
 
BSplineInterpolatorType::Pointer m_BSplineInterpolator
 
BSplineInterpolatorFloatType::Pointer m_BSplineInterpolatorFloat
 
CentralDifferenceGradientFilterType::Pointer m_CentralDifferenceGradientFilter
 
FixedImageLimiterType::Pointer m_FixedImageLimiter
 
FixedImageLimiterOutputType m_FixedImageMaxLimit
 
FixedImageLimiterOutputType m_FixedImageMinLimit
 
FixedImagePixelType m_FixedImageTrueMax
 
FixedImagePixelType m_FixedImageTrueMin
 
ImageSamplerPointer m_ImageSampler
 
bool m_InterpolatorIsBSpline
 
bool m_InterpolatorIsBSplineFloat
 
bool m_InterpolatorIsReducedBSpline
 
MovingImageLimiterType::Pointer m_MovingImageLimiter
 
MovingImageLimiterOutputType m_MovingImageMaxLimit
 
MovingImageLimiterOutputType m_MovingImageMinLimit
 
MovingImagePixelType m_MovingImageTrueMax
 
MovingImagePixelType m_MovingImageTrueMin
 
ReducedBSplineInterpolatorType::Pointer m_ReducedBSplineInterpolator
 
bool m_TransformIsAdvanced
 
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
 
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
 
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
 
bool m_ShowExactMetricValue
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
 
ElastixPointer m_Elastix
 
RegistrationPointer m_Registration
 

Detailed Description

template<class TElastix>
class elastix::TransformRigidityPenalty< TElastix >

A penalty term based on non-rigidity.

For more information check the paper:
M. Staring, S. Klein and J.P.W. Pluim, "A Rigidity Penalty Term for Nonrigid Registration," Medical Physics, vol. 34, no. 11, pp. 4098 - 4108, November 2007.

The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "TransformRigidityPenalty")

OrthonormalityConditionWeight: A parameter to weigh the orthonormality condition term of the rigidity term.
example: (OrthonormalityConditionWeight 2.0)
Default is 1.0.

PropernessConditionWeight: A parameter to weigh the properness condition term of the rigidity term.
example: (PropernessConditionWeight 2.0)
Default is 1.0.

UseLinearityCondition: A flag to specify the usage of the linearity condition term for optimisation.
example: (UseLinearityCondition "false")
Default is "true".

UseOrthonormalityCondition: A flag to specify the usage of the orthonormality condition term for optimisation.
example: (UseOrthonormalityCondition "false")
Default is "true".

UsePropernessCondition: A flag to specify the usage of the properness condition term for optimisation.
example: (UsePropernessCondition "false")
Default is "true".

CalculateLinearityCondition: A flag to specify if the linearity condition should still be calculated, even if it is not used for optimisation.
example: (CalculateLinearityCondition "false")
Default is "true".

CalculateOrthonormalityCondition: A flag to specify if the orthonormality condition should still be calculated, even if it is not used for optimisation.
example: (CalculateOrthonormalityCondition "false")
Default is "true".

CalculatePropernessCondition: A flag to specify if the properness condition should still be calculated, even if it is not used for optimisation.
example: (CalculatePropernessCondition "false")
Default is "true".

FixedRigidityImageName: the name of a coefficient image to specify the rigidity index of voxels in the fixed image.
example: (FixedRigidityImageName "fixedRigidityImage.mhd")
If not supplied the rigidity coefficient is not based on the fixed image, which is recommended.
If neither FixedRigidityImageName nor MovingRigidityImageName are supplied, the rigidity penalty term is evaluated on the whole transform input domain.

MovingRigidityImageName: the name of a coefficient image to specify the rigidity index of voxels in the moving image.
example: (MovingRigidityImageName "movingRigidityImage.mhd")
If not supplied the rigidity coefficient is not based on the moving image, which is NOT recommended.
If neither FixedRigidityImageName nor MovingRigidityImageName are supplied, the rigidity penalty term is evaluated on the whole transform input domain.

DilateRigidityImages: flag to specify the dilation of the rigidity coefficient images. With this the region of rigidity can be extended to force rigidity of the inner region.
example: (DilateRigidityImages "false" "false" "true")
Default is "true".

DilationRadiusMultiplier: the dilation radius is a multiplier times the grid spacing of the B-spline transform.
example: (DilationRadiusMultiplier 1.0 1.0 2.0)
Default is 1.0.

Parameters:
LinearityConditionWeight: A parameter to weigh the linearity condition term of the rigidity term.
example: (LinearityConditionWeight 2.0)
Default is 1.0.

Definition at line 108 of file elxTransformRigidityPenaltyTerm.h.

Member Typedef Documentation

Definition at line 177 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 191 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 190 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef itk::SmartPointer<const Self> elastix::TransformRigidityPenalty< TElastix >::ConstPointer

Definition at line 123 of file elxTransformRigidityPenaltyTerm.h.

Typedefs from the superclass.

Definition at line 138 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::DerivativeType elastix::TransformRigidityPenalty< TElastix >::DerivativeType

Definition at line 164 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::TransformRigidityPenalty< TElastix >::ElastixPointer

Definition at line 189 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::TransformRigidityPenalty< TElastix >::ElastixType

Typedef's inherited from elastix.

Definition at line 188 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 143 of file elxTransformRigidityPenaltyTerm.h.

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Definition at line 166 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 144 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::FixedImageType elastix::TransformRigidityPenalty< TElastix >::FixedImageType

Definition at line 142 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 158 of file elxTransformRigidityPenaltyTerm.h.

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template<class TElastix >
typedef Superclass1::InputPointType elastix::TransformRigidityPenalty< TElastix >::InputPointType

Definition at line 147 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 152 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 151 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::TransformRigidityPenalty< TElastix >::ITKBaseType

Definition at line 194 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::MeasureType elastix::TransformRigidityPenalty< TElastix >::MeasureType

Definition at line 163 of file elxTransformRigidityPenaltyTerm.h.

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template<class TElastix >
typedef Superclass1::MovingImageType elastix::TransformRigidityPenalty< TElastix >::MovingImageType

Definition at line 139 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::OutputPointType elastix::TransformRigidityPenalty< TElastix >::OutputPointType

Definition at line 148 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::ParametersType elastix::TransformRigidityPenalty< TElastix >::ParametersType

Definition at line 165 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef itk::SmartPointer<Self> elastix::TransformRigidityPenalty< TElastix >::Pointer

Definition at line 122 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::RealType elastix::TransformRigidityPenalty< TElastix >::RealType

Definition at line 153 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 193 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 192 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef TransformRigidityPenalty elastix::TransformRigidityPenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 117 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef itk::TransformRigidityPenaltyTerm< typename MetricBase<TElastix>::FixedImageType, double > elastix::TransformRigidityPenalty< TElastix >::Superclass1

Definition at line 120 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef MetricBase<TElastix> elastix::TransformRigidityPenalty< TElastix >::Superclass2

Definition at line 121 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef TimerType::Pointer elastix::TransformRigidityPenalty< TElastix >::TimerPointer

Typedef for timer.

Definition at line 199 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef tmr::Timer elastix::TransformRigidityPenalty< TElastix >::TimerType

Typedef for timer.

Definition at line 197 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 150 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 149 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 146 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::TransformType elastix::TransformRigidityPenalty< TElastix >::TransformType

Definition at line 145 of file elxTransformRigidityPenaltyTerm.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::TransformRigidityPenalty ( )
inlineprotected

The constructor.

Definition at line 235 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
virtual elastix::TransformRigidityPenalty< TElastix >::~TransformRigidityPenalty ( )
inlineprotectedvirtual

The destructor.

Definition at line 238 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::TransformRigidityPenalty ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::AfterEachIteration ( void  )
virtual

Do some things after each iteration:

  • Print the OC, PC, LC parts of the rigidity term.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::BeforeEachResolution ( void  )
virtual

Do some things before each resolution:

  • Read all parameters.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::BeforeRegistration ( void  )
virtual

Do some things before registration:

  • Read the fixed rigidity image.
  • Read the moving rigidity image.
  • Setup some extra target cells.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::elxClassNameMacro ( "TransformRigidityPenalty< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "TransformRigidityPenalty")

template<class TElastix >
virtual const char* elastix::TransformRigidityPenalty< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::Initialize ( void  )
throw (itk::ExceptionObject
)
virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

template<class TElastix >
static Pointer elastix::TransformRigidityPenalty< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::TransformRigidityPenalty< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::SelectNewSamples ( void  )
inlinevirtual

This metric is advanced (so it has a sampling possibility), but it purposely does not use samplers. The MetricBase class, however, issues a warning if this is the case, so we overwrite that function.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 230 of file elxTransformRigidityPenaltyTerm.h.



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