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#include <elxViolaWellsMutualInformationMetric.h>
Public Types | |
typedef Superclass2::ConfigurationPointer | ConfigurationPointer |
typedef Superclass2::ConfigurationType | ConfigurationType |
typedef itk::SmartPointer < const Self > | ConstPointer |
typedef Superclass1::DerivativeType | DerivativeType |
typedef Superclass2::ElastixPointer | ElastixPointer |
typedef Superclass2::ElastixType | ElastixType |
typedef Superclass1::FixedImageConstPointer | FixedImageConstPointer |
typedef Superclass1::FixedImageIndexType | FixedImageIndexType |
typedef Superclass1::FixedImageIndexValueType | FixedImageIndexValueType |
typedef Superclass1::FixedImagePointType | FixedImagePointType |
typedef Superclass1::FixedImageType | FixedImageType |
typedef Superclass1::InterpolatorType | InterpolatorType |
typedef Superclass2::ITKBaseType | ITKBaseType |
typedef Superclass1::MeasureType | MeasureType |
typedef Superclass1::MovingImageConstPointer | MovingImageCosntPointer |
typedef Superclass1::MovingImageIndexType | MovingImageIndexType |
typedef Superclass1::MovingImagePointType | MovingImagePointType |
typedef Superclass1::MovingImageType | MovingImageType |
typedef Superclass1::ParametersType | ParametersType |
typedef itk::SmartPointer< Self > | Pointer |
typedef Superclass2::RegistrationPointer | RegistrationPointer |
typedef Superclass2::RegistrationType | RegistrationType |
typedef ViolaWellsMutualInformationMetric | Self |
typedef itk::MutualInformationImageToImageMetric < typename MetricBase < TElastix >::FixedImageType, typename MetricBase< TElastix > ::MovingImageType > | Superclass1 |
typedef MetricBase< TElastix > | Superclass2 |
typedef TimerType::Pointer | TimerPointer |
typedef tmr::Timer | TimerType |
typedef Superclass1::TransformJacobianType | TransformJacobianType |
typedef Superclass1::TransformPointer | TransformPointer |
typedef Superclass1::TransformType | TransformType |
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typedef itk::AdvancedImageToImageMetric < FixedImageType, MovingImageType > | AdvancedMetricType |
typedef Superclass::ConfigurationPointer | ConfigurationPointer |
typedef Superclass::ConfigurationType | ConfigurationType |
typedef ITKBaseType::ParametersValueType | CoordinateRepresentationType |
typedef Superclass::ElastixPointer | ElastixPointer |
typedef Superclass::ElastixType | ElastixType |
typedef ElastixType::FixedImageType | FixedImageType |
typedef itk::PointSet < CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits < CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > | FixedPointSetType |
typedef FixedImageType::PointType | FixedPointType |
typedef FixedPointType::ValueType | FixedPointValueType |
typedef AdvancedMetricType::ImageSamplerType | ImageSamplerBaseType |
typedef itk::SingleValuedCostFunction | ITKBaseType |
typedef ITKBaseType::MeasureType | MeasureType |
typedef ElastixType::MovingImageType | MovingImageType |
typedef itk::PointSet < CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits < CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > | MovingPointSetType |
typedef MovingImageType::PointType | MovingPointType |
typedef MovingPointType::ValueType | MovingPointValueType |
typedef Superclass::RegistrationPointer | RegistrationPointer |
typedef Superclass::RegistrationType | RegistrationType |
typedef MetricBase | Self |
typedef BaseComponentSE< TElastix > | Superclass |
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typedef ElastixType::ConfigurationPointer | ConfigurationPointer |
typedef ElastixType::ConfigurationType | ConfigurationType |
typedef ElastixType::Pointer | ElastixPointer |
typedef TElastix | ElastixType |
typedef RegistrationType * | RegistrationPointer |
typedef ElastixType::RegistrationBaseType | RegistrationType |
typedef BaseComponentSE | Self |
typedef BaseComponent | Superclass |
Public Member Functions | |
virtual void | BeforeEachResolution (void) |
elxClassNameMacro ("ViolaWellsMutualInformation") | |
virtual const char * | GetClassName () const |
virtual void | Initialize (void) throw (itk::ExceptionObject) |
itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) | |
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virtual void | AfterEachIterationBase (void) |
virtual void | BeforeEachResolutionBase (void) |
virtual ImageSamplerBaseType * | GetAdvancedMetricImageSampler (void) const |
virtual bool | GetAdvancedMetricUseImageSampler (void) const |
virtual ITKBaseType * | GetAsITKBaseType (void) |
virtual const ITKBaseType * | GetAsITKBaseType (void) const |
virtual MeasureType | GetCurrentExactMetricValue (void) const |
virtual bool | GetShowExactMetricValue (void) const |
itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension) | |
itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) | |
virtual void | SelectNewSamples (void) |
virtual void | SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler) |
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virtual ConfigurationType * | GetConfiguration (void) const |
virtual ElastixType * | GetElastix (void) const |
virtual RegistrationPointer | GetRegistration (void) const |
virtual void | SetConfiguration (ConfigurationType *_arg) |
virtual void | SetElastix (ElastixType *_arg) |
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virtual void | AfterEachIteration (void) |
virtual void | AfterEachResolution (void) |
virtual void | AfterEachResolutionBase (void) |
virtual void | AfterRegistration (void) |
virtual void | AfterRegistrationBase (void) |
virtual int | BeforeAll (void) |
virtual int | BeforeAllBase (void) |
virtual void | BeforeRegistration (void) |
virtual void | BeforeRegistrationBase (void) |
virtual const char * | elxGetClassName (void) const |
virtual const char * | GetComponentLabel (void) const |
virtual void | SetComponentLabel (const char *label, unsigned int idx) |
Static Public Member Functions | |
static Pointer | New () |
Protected Member Functions | |
ViolaWellsMutualInformationMetric () | |
virtual | ~ViolaWellsMutualInformationMetric () |
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virtual MeasureType | GetExactValue (const ParametersType ¶meters) |
MetricBase () | |
virtual | ~MetricBase () |
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BaseComponentSE () | |
virtual | ~BaseComponentSE () |
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BaseComponent () | |
virtual | ~BaseComponent () |
Private Member Functions | |
void | operator= (const Self &) |
ViolaWellsMutualInformationMetric (const Self &) | |
Additional Inherited Members | |
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typedef itk::ImageGridSampler < FixedImageType > | ExactMetricImageSamplerType |
typedef ExactMetricImageSamplerType::SampleGridSpacingType | ExactMetricSampleGridSpacingType |
typedef ITKBaseType::ParametersType | ParametersType |
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MeasureType | m_CurrentExactMetricValue |
ExactMetricSampleGridSpacingType | m_ExactMetricSampleGridSpacing |
ExactMetricImageSamplerType::Pointer | m_ExactMetricSampler |
bool | m_ShowExactMetricValue |
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ConfigurationPointer | m_Configuration |
ElastixPointer | m_Elastix |
RegistrationPointer | m_Registration |
A metric based on the itk::MutualInformationImageToImageMetric.
The parameters used in this class are:
Metric: Select this metric as follows:
(Metric "ViolaWellsMutualInformation")
NumberOfSpatialSamples: for each resolution the number of samples used to calculate this metrics value and its derivative.
example: (NumberOfSpatialSamples 5000 5000 10000)
The default is 10000 for each resolution.
FixedImageStandardDeviation: for each resolution the standard deviation of the fixed image.
example: (FixedImageStandardDeviation 1.3 1.9 1.0)
The default is 0.4 for each resolution.
MovingImageStandardDeviation: for each resolution the standard deviation of the moving image.
example: (MovingImageStandardDeviation 1.3 1.9 1.0)
The default is 0.4 for each resolution.
Definition at line 59 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass2::ConfigurationPointer elastix::ViolaWellsMutualInformationMetric< TElastix >::ConfigurationPointer |
Definition at line 116 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass2::ConfigurationType elastix::ViolaWellsMutualInformationMetric< TElastix >::ConfigurationType |
Definition at line 115 of file elxViolaWellsMutualInformationMetric.h.
typedef itk::SmartPointer<const Self> elastix::ViolaWellsMutualInformationMetric< TElastix >::ConstPointer |
Definition at line 75 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::DerivativeType elastix::ViolaWellsMutualInformationMetric< TElastix >::DerivativeType |
Definition at line 96 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass2::ElastixPointer elastix::ViolaWellsMutualInformationMetric< TElastix >::ElastixPointer |
Definition at line 114 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass2::ElastixType elastix::ViolaWellsMutualInformationMetric< TElastix >::ElastixType |
Typedef's inherited from Elastix.
Definition at line 113 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::FixedImageConstPointer elastix::ViolaWellsMutualInformationMetric< TElastix >::FixedImageConstPointer |
Definition at line 100 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::FixedImageIndexType elastix::ViolaWellsMutualInformationMetric< TElastix >::FixedImageIndexType |
Definition at line 102 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::FixedImageIndexValueType elastix::ViolaWellsMutualInformationMetric< TElastix >::FixedImageIndexValueType |
Definition at line 103 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::FixedImagePointType elastix::ViolaWellsMutualInformationMetric< TElastix >::FixedImagePointType |
Definition at line 105 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::FixedImageType elastix::ViolaWellsMutualInformationMetric< TElastix >::FixedImageType |
Definition at line 98 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::InterpolatorType elastix::ViolaWellsMutualInformationMetric< TElastix >::InterpolatorType |
Definition at line 94 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass2::ITKBaseType elastix::ViolaWellsMutualInformationMetric< TElastix >::ITKBaseType |
Definition at line 119 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::MeasureType elastix::ViolaWellsMutualInformationMetric< TElastix >::MeasureType |
Definition at line 95 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::MovingImageConstPointer elastix::ViolaWellsMutualInformationMetric< TElastix >::MovingImageCosntPointer |
Definition at line 101 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::MovingImageIndexType elastix::ViolaWellsMutualInformationMetric< TElastix >::MovingImageIndexType |
Definition at line 104 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::MovingImagePointType elastix::ViolaWellsMutualInformationMetric< TElastix >::MovingImagePointType |
Definition at line 106 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::MovingImageType elastix::ViolaWellsMutualInformationMetric< TElastix >::MovingImageType |
Definition at line 99 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::ParametersType elastix::ViolaWellsMutualInformationMetric< TElastix >::ParametersType |
Definition at line 97 of file elxViolaWellsMutualInformationMetric.h.
typedef itk::SmartPointer<Self> elastix::ViolaWellsMutualInformationMetric< TElastix >::Pointer |
Definition at line 74 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass2::RegistrationPointer elastix::ViolaWellsMutualInformationMetric< TElastix >::RegistrationPointer |
Definition at line 118 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass2::RegistrationType elastix::ViolaWellsMutualInformationMetric< TElastix >::RegistrationType |
Definition at line 117 of file elxViolaWellsMutualInformationMetric.h.
typedef ViolaWellsMutualInformationMetric elastix::ViolaWellsMutualInformationMetric< TElastix >::Self |
Standard ITK-stuff.
Definition at line 69 of file elxViolaWellsMutualInformationMetric.h.
typedef itk::MutualInformationImageToImageMetric< typename MetricBase<TElastix>::FixedImageType, typename MetricBase<TElastix>::MovingImageType > elastix::ViolaWellsMutualInformationMetric< TElastix >::Superclass1 |
Definition at line 72 of file elxViolaWellsMutualInformationMetric.h.
typedef MetricBase<TElastix> elastix::ViolaWellsMutualInformationMetric< TElastix >::Superclass2 |
Definition at line 73 of file elxViolaWellsMutualInformationMetric.h.
typedef TimerType::Pointer elastix::ViolaWellsMutualInformationMetric< TElastix >::TimerPointer |
Definition at line 123 of file elxViolaWellsMutualInformationMetric.h.
typedef tmr::Timer elastix::ViolaWellsMutualInformationMetric< TElastix >::TimerType |
Typedef's for timer.
Definition at line 122 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::TransformJacobianType elastix::ViolaWellsMutualInformationMetric< TElastix >::TransformJacobianType |
Definition at line 93 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::TransformPointer elastix::ViolaWellsMutualInformationMetric< TElastix >::TransformPointer |
Definition at line 92 of file elxViolaWellsMutualInformationMetric.h.
typedef Superclass1::TransformType elastix::ViolaWellsMutualInformationMetric< TElastix >::TransformType |
Typedefs inherited from the superclass.
Definition at line 91 of file elxViolaWellsMutualInformationMetric.h.
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protected |
The constructor.
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inlineprotectedvirtual |
The destructor.
Definition at line 142 of file elxViolaWellsMutualInformationMetric.h.
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private |
The private constructor.
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virtual |
Execute stuff before each new pyramid resolution:
Reimplemented from elastix::BaseComponent.
elastix::ViolaWellsMutualInformationMetric< TElastix >::elxClassNameMacro | ( | "ViolaWellsMutualInformation" | ) |
Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "ViolaWellsMutualInformation")
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virtual |
Run-time type information (and related methods).
Reimplemented from elastix::MetricBase< TElastix >.
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virtual |
Sets up a timer to measure the intialisation time and calls the Superclass' implementation.
elastix::ViolaWellsMutualInformationMetric< TElastix >::itkStaticConstMacro | ( | MovingImageDimension | , |
unsigned | int, | ||
MovingImageType::ImageDimension | |||
) |
The moving image dimension.
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static |
Method for creation through the object factory.
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private |
The private copy constructor.
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