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elastix::MultiResolutionRegistration< TElastix > Class Template Reference

#include <elxMultiResolutionRegistration.h>

Inheritance diagram for elastix::MultiResolutionRegistration< TElastix >:
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Collaboration diagram for elastix::MultiResolutionRegistration< TElastix >:
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Public Types

typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass2::ConfigurationType 
ConfigurationType
 
typedef itk::SmartPointer
< const Self
ConstPointer
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass1::FixedImagePyramidPointer 
FixedImagePyramidPointer
 
typedef
Superclass1::FixedImagePyramidType 
FixedImagePyramidType
 
typedef
Superclass1::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass1::FixedImageType FixedImageType
 
typedef
Superclass1::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass1::InterpolatorType 
InterpolatorType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::MetricPointer MetricPointer
 
typedef Superclass1::MetricType MetricType
 
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass1::MovingImagePyramidPointer 
MovingImagePyramidPointer
 
typedef
Superclass1::MovingImagePyramidType 
MovingImagePyramidType
 
typedef
Superclass1::MovingImageType 
MovingImageType
 
typedef Superclass1::OptimizerType OptimizerType
 
typedef Superclass1::ParametersType ParametersType
 
typedef itk::SmartPointer< SelfPointer
 
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass2::RegistrationType 
RegistrationType
 
typedef MultiResolutionRegistration Self
 
typedef RegistrationBase
< TElastix >::ITKBaseType 
Superclass1
 
typedef RegistrationBase
< TElastix > 
Superclass2
 
typedef
Superclass1::TransformPointer 
TransformPointer
 
typedef Superclass1::TransformType TransformType
 
typedef
Superclass2::UseMaskErosionArrayType 
UseMaskErosionArrayType
 
- Public Types inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
typedef SmartPointer< const SelfConstPointer
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
FixedImageType::ConstPointer 
FixedImageConstPointer
 
typedef
FixedImagePyramidType::Pointer 
FixedImagePyramidPointer
 
typedef
MultiResolutionPyramidImageFilter
< FixedImageType,
FixedImageType
FixedImagePyramidType
 
typedef std::vector
< FixedImageRegionType
FixedImageRegionPyramidType
 
typedef FixedImageType::RegionType FixedImageRegionType
 
typedef TFixedImage FixedImageType
 
typedef InterpolatorType::Pointer InterpolatorPointer
 
typedef
MetricType::InterpolatorType 
InterpolatorType
 
typedef MetricType::Pointer MetricPointer
 
typedef
AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
MetricType
 
typedef
MovingImageType::ConstPointer 
MovingImageConstPointer
 
typedef
MovingImagePyramidType::Pointer 
MovingImagePyramidPointer
 
typedef
MultiResolutionPyramidImageFilter
< MovingImageType,
MovingImageType
MovingImagePyramidType
 
typedef TMovingImage MovingImageType
 
typedef
SingleValuedNonLinearOptimizer 
OptimizerType
 
typedef
MetricType::TransformParametersType 
ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef
MultiResolutionImageRegistrationMethod2 
Self
 
typedef ProcessObject Superclass
 
typedef
TransformOutputType::ConstPointer 
TransformOutputConstPointer
 
typedef
TransformOutputType::Pointer 
TransformOutputPointer
 
typedef DataObjectDecorator
< TransformType
TransformOutputType
 
typedef TransformType::Pointer TransformPointer
 
typedef
MetricType::AdvancedTransformType 
TransformType
 
- Public Types inherited from elastix::RegistrationBase< TElastix >
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass::ConfigurationType 
ConfigurationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef
itk::MultiResolutionImageRegistrationMethod2
< FixedImageType,
MovingImageType
ITKBaseType
 
typedef
ElastixType::MovingImageType 
MovingImageType
 
typedef
Superclass::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass::RegistrationType 
RegistrationType
 
typedef RegistrationBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
typedef std::vector< boolUseMaskErosionArrayType
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
 
typedef
ElastixType::ConfigurationType 
ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef
ElastixType::RegistrationBaseType 
RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void BeforeEachResolution (void)
 
virtual void BeforeRegistration (void)
 
 elxClassNameMacro ("MultiResolutionRegistration")
 
virtual const char * GetClassName () const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, Superclass2::FixedImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, Superclass2::MovingImageDimension)
 
- Public Member Functions inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
virtual unsigned long GetCurrentLevel ()
 
virtual const FixedImageTypeGetFixedImage ()
 
virtual FixedImagePyramidTypeGetFixedImagePyramid ()
 
virtual const
FixedImageRegionType
GetFixedImageRegion ()
 
virtual const ParametersTypeGetInitialTransformParameters ()
 
virtual const ParametersTypeGetInitialTransformParametersOfNextLevel ()
 
virtual InterpolatorTypeGetInterpolator ()
 
virtual const ParametersTypeGetLastTransformParameters ()
 
virtual MetricTypeGetMetric ()
 
virtual const MovingImageTypeGetMovingImage ()
 
virtual MovingImagePyramidTypeGetMovingImagePyramid ()
 
unsigned long GetMTime (void) const
 
virtual unsigned long GetNumberOfLevels ()
 
virtual OptimizerTypeGetOptimizer ()
 
const TransformOutputTypeGetOutput (void) const
 
virtual TransformTypeGetTransform ()
 
virtual DataObjectPointer MakeOutput (unsigned int idx)
 
virtual void SetFixedImage (const FixedImageType *_arg)
 
virtual void SetFixedImagePyramid (FixedImagePyramidType *_arg)
 
virtual void SetFixedImageRegion (FixedImageRegionType _arg)
 
virtual void SetInitialTransformParameters (ParametersType _arg)
 
virtual void SetInitialTransformParametersOfNextLevel (ParametersType _arg)
 
virtual void SetInterpolator (InterpolatorType *_arg)
 
virtual void SetMetric (MetricType *_arg)
 
virtual void SetMovingImage (const MovingImageType *_arg)
 
virtual void SetMovingImagePyramid (MovingImagePyramidType *_arg)
 
virtual void SetNumberOfLevels (unsigned long _arg)
 
virtual void SetOptimizer (OptimizerType *_arg)
 
virtual void SetTransform (TransformType *_arg)
 
virtual void StartRegistration (void)
 
virtual void StopRegistration (void)
 
- Public Member Functions inherited from elastix::RegistrationBase< TElastix >
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual bool ReadMaskParameters (UseMaskErosionArrayType &useMaskErosionArray, const unsigned int nrOfMasks, const std::string &whichMask, const unsigned int level) const
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
 
virtual void AfterEachIterationBase (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual void BeforeRegistrationBase (void)
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
static Pointer New ()
 

Protected Types

typedef
Superclass2::FixedMaskImagePointer 
FixedMaskImagePointer
 
typedef
Superclass2::FixedMaskImageType 
FixedMaskImageType
 
typedef
Superclass2::FixedMaskSpatialObjectPointer 
FixedMaskSpatialObjectPointer
 
typedef
Superclass2::FixedMaskSpatialObjectType 
FixedMaskSpatialObjectType
 
typedef Superclass2::MaskPixelType MaskPixelType
 
typedef
Superclass2::MovingMaskImagePointer 
MovingMaskImagePointer
 
typedef
Superclass2::MovingMaskImageType 
MovingMaskImageType
 
typedef
Superclass2::MovingMaskSpatialObjectPointer 
MovingMaskSpatialObjectPointer
 
typedef
Superclass2::MovingMaskSpatialObjectType 
MovingMaskSpatialObjectType
 
typedef TimerType::Pointer TimerPointer
 
typedef tmr::Timer TimerType
 
- Protected Types inherited from elastix::RegistrationBase< TElastix >
typedef
ITKBaseType::FixedImagePyramidType 
FixedImagePyramidType
 
typedef
FixedMaskErodeFilterType::Pointer 
FixedMaskErodeFilterPointer
 
typedef
itk::ErodeMaskImageFilter
< FixedMaskImageType
FixedMaskErodeFilterType
 
typedef FixedMaskImageType::Pointer FixedMaskImagePointer
 
typedef ElastixType::FixedMaskType FixedMaskImageType
 
typedef
FixedMaskSpatialObjectType::Pointer 
FixedMaskSpatialObjectPointer
 
typedef
itk::ImageMaskSpatialObject2
< itkGetStaticConstMacro(FixedImageDimension) > 
FixedMaskSpatialObjectType
 
typedef ElastixType::MaskPixelType MaskPixelType
 
typedef
ITKBaseType::MovingImagePyramidType 
MovingImagePyramidType
 
typedef
MovingMaskErodeFilterType::Pointer 
MovingMaskErodeFilterPointer
 
typedef
itk::ErodeMaskImageFilter
< MovingMaskImageType
MovingMaskErodeFilterType
 
typedef
MovingMaskImageType::Pointer 
MovingMaskImagePointer
 
typedef ElastixType::MovingMaskType MovingMaskImageType
 
typedef
MovingMaskSpatialObjectType::Pointer 
MovingMaskSpatialObjectPointer
 
typedef
itk::ImageMaskSpatialObject2
< itkGetStaticConstMacro(MovingImageDimension) > 
MovingMaskSpatialObjectType
 

Protected Member Functions

 MultiResolutionRegistration ()
 
virtual void SetComponents (void)
 
void UpdateMasks (unsigned int level)
 
virtual ~MultiResolutionRegistration ()
 
- Protected Member Functions inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
virtual void GenerateData (void)
 
virtual void Initialize () throw (ExceptionObject)
 
 MultiResolutionImageRegistrationMethod2 ()
 
virtual void PreparePyramids (void)
 
virtual void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void SetCurrentLevel (unsigned long _arg)
 
virtual ~MultiResolutionImageRegistrationMethod2 ()
 
- Protected Member Functions inherited from elastix::RegistrationBase< TElastix >
FixedMaskSpatialObjectPointer GenerateFixedMaskSpatialObject (const FixedMaskImageType *maskImage, bool useMaskErosion, const FixedImagePyramidType *pyramid, unsigned int level) const
 
MovingMaskSpatialObjectPointer GenerateMovingMaskSpatialObject (const MovingMaskImageType *maskImage, bool useMaskErosion, const MovingImagePyramidType *pyramid, unsigned int level) const
 
 RegistrationBase ()
 
virtual ~RegistrationBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

 MultiResolutionRegistration (const Self &)
 
void operator= (const Self &)
 

Additional Inherited Members

- Protected Attributes inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
ParametersType m_LastTransformParameters
 
bool m_Stop
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
 
ElastixPointer m_Elastix
 
RegistrationPointer m_Registration
 

Detailed Description

template<class TElastix>
class elastix::MultiResolutionRegistration< TElastix >

A registration framework based on the itk::MultiResolutionImageRegistrationMethod.

This MultiResolutionRegistration gives a framework for registration with a multi-resolution approach.

The parameters used in this class are:

Parameters:

Registration: Select this registration framework as follows:
(Registration "MultiResolutionRegistration")

NumberOfResolutions: the number of resolutions used.
example: (NumberOfResolutions 4)
The default is 3.

Definition at line 43 of file elxMultiResolutionRegistration.h.

Member Typedef Documentation

Definition at line 114 of file elxMultiResolutionRegistration.h.

Definition at line 113 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef itk::SmartPointer<const Self> elastix::MultiResolutionRegistration< TElastix >::ConstPointer

Definition at line 57 of file elxMultiResolutionRegistration.h.

Definition at line 112 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::MultiResolutionRegistration< TElastix >::ElastixType

Typedef's from Elastix.

Definition at line 111 of file elxMultiResolutionRegistration.h.

Definition at line 75 of file elxMultiResolutionRegistration.h.

Definition at line 99 of file elxMultiResolutionRegistration.h.

Type of the Fixed image multiresolution pyramid.

Definition at line 98 of file elxMultiResolutionRegistration.h.

Definition at line 76 of file elxMultiResolutionRegistration.h.

Typedef's inherited from Superclass1. Type of the Fixed image.

Definition at line 74 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass2::FixedMaskImagePointer elastix::MultiResolutionRegistration< TElastix >::FixedMaskImagePointer
protected

Definition at line 151 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass2::FixedMaskImageType elastix::MultiResolutionRegistration< TElastix >::FixedMaskImageType
protected

Definition at line 149 of file elxMultiResolutionRegistration.h.

Definition at line 155 of file elxMultiResolutionRegistration.h.

Definition at line 153 of file elxMultiResolutionRegistration.h.

Definition at line 92 of file elxMultiResolutionRegistration.h.

Type of the Interpolator.

Definition at line 91 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::MultiResolutionRegistration< TElastix >::ITKBaseType

Definition at line 117 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass2::MaskPixelType elastix::MultiResolutionRegistration< TElastix >::MaskPixelType
protected

Typedef's for mask support.

Definition at line 148 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass1::MetricPointer elastix::MultiResolutionRegistration< TElastix >::MetricPointer

Definition at line 84 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass1::MetricType elastix::MultiResolutionRegistration< TElastix >::MetricType

Type of the metric.

Definition at line 83 of file elxMultiResolutionRegistration.h.

Definition at line 80 of file elxMultiResolutionRegistration.h.

Definition at line 103 of file elxMultiResolutionRegistration.h.

Type of the moving image multiresolution pyramid.

Definition at line 102 of file elxMultiResolutionRegistration.h.

Type of the Moving image.

Definition at line 79 of file elxMultiResolutionRegistration.h.

Definition at line 152 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass2::MovingMaskImageType elastix::MultiResolutionRegistration< TElastix >::MovingMaskImageType
protected

Definition at line 150 of file elxMultiResolutionRegistration.h.

Definition at line 156 of file elxMultiResolutionRegistration.h.

Definition at line 154 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass1::OptimizerType elastix::MultiResolutionRegistration< TElastix >::OptimizerType

Type of the optimizer.

Definition at line 95 of file elxMultiResolutionRegistration.h.

Type of the Transformation parameters. This is the same type used to represent the search space of the optimization algorithm.

Definition at line 108 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef itk::SmartPointer<Self> elastix::MultiResolutionRegistration< TElastix >::Pointer

Definition at line 56 of file elxMultiResolutionRegistration.h.

Definition at line 116 of file elxMultiResolutionRegistration.h.

Definition at line 115 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef MultiResolutionRegistration elastix::MultiResolutionRegistration< TElastix >::Self

Standard ITK.

Definition at line 52 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef RegistrationBase<TElastix>::ITKBaseType elastix::MultiResolutionRegistration< TElastix >::Superclass1

Definition at line 54 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef RegistrationBase<TElastix> elastix::MultiResolutionRegistration< TElastix >::Superclass2

Definition at line 55 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef TimerType::Pointer elastix::MultiResolutionRegistration< TElastix >::TimerPointer
protected

Typedef for timer.

Definition at line 145 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef tmr::Timer elastix::MultiResolutionRegistration< TElastix >::TimerType
protected

Typedef for timer.

Definition at line 140 of file elxMultiResolutionRegistration.h.

Definition at line 88 of file elxMultiResolutionRegistration.h.

template<class TElastix >
typedef Superclass1::TransformType elastix::MultiResolutionRegistration< TElastix >::TransformType

Type of the Transform .

Definition at line 87 of file elxMultiResolutionRegistration.h.

Definition at line 118 of file elxMultiResolutionRegistration.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::MultiResolutionRegistration< TElastix >::MultiResolutionRegistration ( )
inlineprotected

The constructor.

Definition at line 138 of file elxMultiResolutionRegistration.h.

template<class TElastix >
virtual elastix::MultiResolutionRegistration< TElastix >::~MultiResolutionRegistration ( )
inlineprotectedvirtual

The destructor.

Definition at line 140 of file elxMultiResolutionRegistration.h.

template<class TElastix >
elastix::MultiResolutionRegistration< TElastix >::MultiResolutionRegistration ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::MultiResolutionRegistration< TElastix >::BeforeEachResolution ( void  )
virtual

Execute stuff before each resolution:

  • Update masks with an erosion.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::MultiResolutionRegistration< TElastix >::BeforeRegistration ( void  )
virtual

Execute stuff before the actual registration:

  • Connect all components to the registration framework.
  • Set the number of resolution levels.
  • Set the fixed image region.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::MultiResolutionRegistration< TElastix >::elxClassNameMacro ( "MultiResolutionRegistration< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific registration framework.
example: (Registration "MultiResolutionRegistration")

template<class TElastix >
virtual const char* elastix::MultiResolutionRegistration< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >.

template<class TElastix >
elastix::MultiResolutionRegistration< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
Superclass2::FixedImageDimension   
)

Get the dimension of the fixed image.

template<class TElastix >
elastix::MultiResolutionRegistration< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
Superclass2::MovingImageDimension   
)

Get the dimension of the moving image.

template<class TElastix >
static Pointer elastix::MultiResolutionRegistration< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::MultiResolutionRegistration< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
virtual void elastix::MultiResolutionRegistration< TElastix >::SetComponents ( void  )
protectedvirtual

Read the components from m_Elastix and set them in the Registration class.

template<class TElastix >
void elastix::MultiResolutionRegistration< TElastix >::UpdateMasks ( unsigned int  level)
protected

Function to update fixed and moving masks.



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