sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build04.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mummer 3.23~dfsg-2 (armhf) 04 May 2012 21:44 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mummer Version: 3.23~dfsg-2 Source Version: 3.23~dfsg-2 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/mummer-Of16GC/mummer-3.23~dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mummer-Of16GC' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-f8d8a570-24d2-4f41-a727-a25e0632c08d' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'mummer' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/mummer/trunk/ Need to get 1507 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main mummer 3.23~dfsg-2 (dsc) [1528 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main mummer 3.23~dfsg-2 (tar) [1489 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main mummer 3.23~dfsg-2 (diff) [15.7 kB] Fetched 1507 kB in 0s (8368 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-CiiR3n/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10678 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended dpkg-deb: building package `sbuild-build-depends-mummer-dummy' in `/«BUILDDIR»/resolver-0fU7FQ/apt_archive/sbuild-build-depends-mummer-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mummer build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper ed file fontconfig-config gettext gettext-base groff-base html2text intltool-debian libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libglib2.0-0 libice6 libjpeg8 libkpathsea5 liblcms1 libmagic1 libopenjpeg2 libpaper-utils libpaper1 libpcre3 libpipeline1 libpng12-0 libpoppler13 libsm6 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxt6 luatex man-db mime-support po-debconf tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ttf-dejavu-core x11-common Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff liblcms-utils less www-browser libmail-box-perl perl-tk ghostscript xpdf-reader pdf-viewer gv postscript-viewer Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info poppler-data xml-core texlive-luatex libmail-sendmail-perl lmodern texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-recommended-doc prosper latex-beamer latex-xcolor The following NEW packages will be installed: bsdmainutils debhelper ed file fontconfig-config gettext gettext-base groff-base html2text intltool-debian libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libglib2.0-0 libice6 libjpeg8 libkpathsea5 liblcms1 libmagic1 libopenjpeg2 libpaper-utils libpaper1 libpcre3 libpipeline1 libpng12-0 libpoppler13 libsm6 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxt6 luatex man-db mime-support po-debconf sbuild-build-depends-mummer-dummy tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ttf-dejavu-core x11-common debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/57.9 MB of archives. After this operation, 131 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10678 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libexpat1:armhf. Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ... Selecting previously unselected package libfreetype6:armhf. Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.9-1_armhf.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ... Selecting previously unselected package libfontconfig1:armhf. Unpacking libfontconfig1:armhf (from .../libfontconfig1_2.8.0-3.1_armhf.deb) ... Selecting previously unselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ... Selecting previously unselected package libice6:armhf. Unpacking libice6:armhf (from .../libice6_2%3a1.0.8-2_armhf.deb) ... Selecting previously unselected package libjpeg8:armhf. Unpacking libjpeg8:armhf (from .../libjpeg8_8d-1_armhf.deb) ... Selecting previously unselected package libpng12-0:armhf. Unpacking libpng12-0:armhf (from .../libpng12-0_1.2.49-1_armhf.deb) ... Selecting previously unselected package libsm6:armhf. Unpacking libsm6:armhf (from .../libsm6_2%3a1.2.1-2_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package libxau6:armhf. Unpacking libxau6:armhf (from .../libxau6_1%3a1.0.7-1_armhf.deb) ... Selecting previously unselected package libxdmcp6:armhf. Unpacking libxdmcp6:armhf (from .../libxdmcp6_1%3a1.1.1-1_armhf.deb) ... Selecting previously unselected package libxcb1:armhf. Unpacking libxcb1:armhf (from .../libxcb1_1.8.1-1_armhf.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ... Selecting previously unselected package libx11-6:armhf. Unpacking libx11-6:armhf (from .../libx11-6_2%3a1.4.4-4_armhf.deb) ... Selecting previously unselected package libxext6:armhf. Unpacking libxext6:armhf (from .../libxext6_2%3a1.3.1-2_armhf.deb) ... Selecting previously unselected package libxt6:armhf. Unpacking libxt6:armhf (from .../libxt6_1%3a1.1.3-1_armhf.deb) ... Selecting previously unselected package libxmu6:armhf. Unpacking libxmu6:armhf (from .../libxmu6_2%3a1.1.1-1_armhf.deb) ... Selecting previously unselected package libxpm4:armhf. Unpacking libxpm4:armhf (from .../libxpm4_1%3a3.5.10-1_armhf.deb) ... Selecting previously unselected package libxaw7:armhf. Unpacking libxaw7:armhf (from .../libxaw7_2%3a1.0.10-2_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.52-1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package ed. Unpacking ed (from .../archives/ed_1.6-1_armhf.deb) ... Selecting previously unselected package libkpathsea5. Unpacking libkpathsea5 (from .../libkpathsea5_2009-12_armhf.deb) ... Selecting previously unselected package liblcms1. Unpacking liblcms1 (from .../liblcms1_1.19.dfsg-1_armhf.deb) ... Selecting previously unselected package libpaper1. Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armhf.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_armhf.deb) ... Selecting previously unselected package libopenjpeg2. Unpacking libopenjpeg2 (from .../libopenjpeg2_1.3+dfsg-4_armhf.deb) ... Selecting previously unselected package libpoppler13. Unpacking libpoppler13 (from .../libpoppler13_0.16.7-3_armhf.deb) ... Selecting previously unselected package luatex. Unpacking luatex (from .../luatex_0.70.1-3_armhf.deb) ... Selecting previously unselected package tex-common. Unpacking tex-common (from .../tex-common_2.10_all.deb) ... Selecting previously unselected package texlive-common. Unpacking texlive-common (from .../texlive-common_2009-15_all.deb) ... Selecting previously unselected package texlive-doc-base. Unpacking texlive-doc-base (from .../texlive-doc-base_2009-2_all.deb) ... Selecting previously unselected package texlive-binaries. Unpacking texlive-binaries (from .../texlive-binaries_2009-12_armhf.deb) ... Selecting previously unselected package texlive-base. Unpacking texlive-base (from .../texlive-base_2009-15_all.deb) ... Selecting previously unselected package texlive-fonts-recommended. Unpacking texlive-fonts-recommended (from .../texlive-fonts-recommended_2009-15_all.deb) ... Selecting previously unselected package texlive-latex-base. Unpacking texlive-latex-base (from .../texlive-latex-base_2009-15_all.deb) ... Selecting previously unselected package texlive-latex-recommended. Unpacking texlive-latex-recommended (from .../texlive-latex-recommended_2009-15_all.deb) ... Selecting previously unselected package sbuild-build-depends-mummer-dummy. Unpacking sbuild-build-depends-mummer-dummy (from .../sbuild-build-depends-mummer-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3.1) ... Setting up libfontconfig1:armhf (2.8.0-3.1) ... Setting up x11-common (1:7.6+12) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.4.4-4) ... Setting up libx11-6:armhf (2:1.4.4-4) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up libxmu6:armhf (2:1.1.1-1) ... Setting up libxpm4:armhf (1:3.5.10-1) ... Setting up libxaw7:armhf (2:1.0.10-2) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up ed (1.6-1) ... Setting up libkpathsea5 (2009-12) ... Setting up liblcms1 (1.19.dfsg-1) ... Setting up libpaper1 (1.1.24+nmu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu1) ... Setting up libopenjpeg2 (1.3+dfsg-4) ... Setting up libpoppler13 (0.16.7-3) ... Setting up luatex (0.70.1-3) ... texlive-base is not ready, cannot create formats Setting up tex-common (2.10) ... Creating config file /etc/texmf/texmf.d/05TeXMF.cnf with new version Creating config file /etc/texmf/texmf.d/15Plain.cnf with new version Creating config file /etc/texmf/texmf.d/45TeXinputs.cnf with new version Creating config file /etc/texmf/texmf.d/55Fonts.cnf with new version Creating config file /etc/texmf/texmf.d/65BibTeX.cnf with new version Creating config file /etc/texmf/texmf.d/75DviPS.cnf with new version Creating config file /etc/texmf/texmf.d/80DVIPDFMx.cnf with new version Creating config file /etc/texmf/texmf.d/85Misc.cnf with new version Creating config file /etc/texmf/texmf.d/90TeXDoc.cnf with new version Creating config file /etc/texmf/texmf.d/95NonPath.cnf with new version Creating config file /etc/texmf/updmap.d/00updmap.cfg with new version Creating config file /etc/texmf/texmf.cnf with new version Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-common (2009-15) ... Setting up texlive-doc-base (2009-2) ... Setting up texlive-binaries (2009-12) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2009-15) ... Creating config file /etc/texmf/dvips/config/config.ps with new version Creating config file /etc/texmf/tex/generic/config/pdftexconfig.tex with new version Creating config file /etc/texmf/dvipdfmx/dvipdfmx.cfg with new version Creating config file /etc/texmf/xdvi/XDvi with new version Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building e-tex based formats --byhyphen /var/lib/texmf/tex/generic/config/language.def. This may take some time... done. Setting up texlive-fonts-recommended (2009-15) ... Setting up texlive-latex-base (2009-15) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2009-15) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up sbuild-build-depends-mummer-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-30 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 ed_1.6-1 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi libice6_2:1.0.8-2 libjpeg8_8d-1 libkpathsea5_2009-12 liblcms1_1.19.dfsg-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libopenjpeg2_1.3+dfsg-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libpng12-0_1.2.49-1 libpoppler13_0.16.7-3 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxaw7_2:1.0.10-2 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxml2_2.7.8.dfsg-9 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 luatex_0.70.1-3 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mummer-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tex-common_2.10 texlive-base_2009-15 texlive-binaries_2009-12 texlive-common_2009-15 texlive-doc-base_2009-2 texlive-fonts-recommended_2009-15 texlive-latex-base_2009-15 texlive-latex-recommended_2009-15 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 x11-common_1:7.6+12 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sat Apr 21 21:25:52 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mummer_3.23~dfsg-2.dsc dpkg-source: info: extracting mummer in mummer-3.23~dfsg dpkg-source: info: unpacking mummer_3.23~dfsg.orig.tar.gz dpkg-source: info: unpacking mummer_3.23~dfsg-2.debian.tar.gz dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-f8d8a570-24d2-4f41-a727-a25e0632c08d SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package mummer dpkg-buildpackage: source version 3.23~dfsg-2 dpkg-source --before-build mummer-3.23~dfsg dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean csh: not found make[1]: Entering directory `/«PKGBUILDDIR»' rm -f *~ core* cd /«PKGBUILDDIR»/src/kurtz; make clean make[2]: Entering directory `/«PKGBUILDDIR»/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory `/«PKGBUILDDIR»/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory `/«PKGBUILDDIR»/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory `/«PKGBUILDDIR»/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory `/«PKGBUILDDIR»/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory `/«PKGBUILDDIR»/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /«PKGBUILDDIR»; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory `/«PKGBUILDDIR»/src/kurtz/mm3src' make[2]: Leaving directory `/«PKGBUILDDIR»/src/kurtz' cd /«PKGBUILDDIR»/src/tigr; make clean make[2]: Entering directory `/«PKGBUILDDIR»/src/tigr' rm -f *.o *~ cd /«PKGBUILDDIR»; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff cd /«PKGBUILDDIR»/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff make[2]: Leaving directory `/«PKGBUILDDIR»/src/tigr' cd /«PKGBUILDDIR»/scripts; make clean csh: not found make[2]: Entering directory `/«PKGBUILDDIR»/scripts' rm -f *~ cd /«PKGBUILDDIR»; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory `/«PKGBUILDDIR»/scripts' cd /«PKGBUILDDIR»/docs; make clean make[2]: Entering directory `/«PKGBUILDDIR»/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory `/«PKGBUILDDIR»/docs' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' [ -d /«PKGBUILDDIR»/debian/tmp/usr/bin ] || mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/bin [ -d /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer ] || mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer /usr/bin/make BIN_DIR=/«PKGBUILDDIR»/debian/tmp/usr/bin AUX_BIN_DIR=/«PKGBUILDDIR»/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc" csh: not found make[2]: Entering directory `/«PKGBUILDDIR»' cd /«PKGBUILDDIR»/src/kurtz; /usr/bin/make mummer make[3]: Entering directory `/«PKGBUILDDIR»/src/kurtz' cd libbasedir; /usr/bin/make libbase.a make[4]: Entering directory `/«PKGBUILDDIR»/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -D_FORTIFY_SOURCE=2 -c -o space.o space.c ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory `/«PKGBUILDDIR»/src/kurtz/libbasedir' cd streesrc; /usr/bin/make libstree.a make[4]: Entering directory `/«PKGBUILDDIR»/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory `/«PKGBUILDDIR»/src/kurtz/streesrc' cd mm3src; /usr/bin/make mummer make[4]: Entering directory `/«PKGBUILDDIR»/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -DSTREEHUGE -I/«PKGBUILDDIR»/src/kurtz/libbasedir -I/«PKGBUILDDIR»/src/kurtz/streesrc -I../libbasedir -I../streesrc -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /«PKGBUILDDIR»/debian/tmp/usr/bin/mummer; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/mummer make[4]: Leaving directory `/«PKGBUILDDIR»/src/kurtz/mm3src' make[3]: Leaving directory `/«PKGBUILDDIR»/src/kurtz' cd /«PKGBUILDDIR»/src/tigr; /usr/bin/make all make[3]: Entering directory `/«PKGBUILDDIR»/src/tigr' /usr/bin/g++ -O3 tigrinc.cc -c -o tigrinc.o /usr/bin/g++ -O3 annotate.cc tigrinc.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/annotate; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/annotate /usr/bin/g++ -O3 combineMUMs.cc tigrinc.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/combineMUMs; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/combineMUMs combineMUMs.cc:109:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] combineMUMs.cc:135:24: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] combineMUMs.cc:145:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] /usr/bin/g++ -O3 delta.cc -c -o delta.o /usr/bin/g++ -O3 delta-filter.cc tigrinc.o delta.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/delta-filter; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -O3 gaps.cc tigrinc.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/gaps; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/gaps /usr/bin/g++ -O3 mgaps.cc tigrinc.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/mgaps; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/mgaps mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': mgaps.cc:620:19: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] /usr/bin/g++ -O3 sw_align.cc -c -o sw_align.o /usr/bin/g++ -O3 postnuc.cc tigrinc.o sw_align.o -o /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -O3 translate.cc -c -o translate.o /usr/bin/g++ -O3 postpro.cc tigrinc.o sw_align.o translate.o -o /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/postpro; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -O3 prenuc.cc tigrinc.o -o /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -O3 prepro.cc tigrinc.o translate.o -o /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/prepro; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -O3 repeat-match.cc tigrinc.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/repeat-match; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/repeat-match /usr/bin/g++ -O3 show-aligns.cc tigrinc.o translate.o delta.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/show-aligns; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -O3 show-coords.cc tigrinc.o delta.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/show-coords; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/show-coords show-coords.cc: In function 'void printBtab(std::vector)': show-coords.cc:799:12: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] show-coords.cc:801:12: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] show-coords.cc:803:12: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] /usr/bin/g++ -O3 show-tiling.cc tigrinc.o delta.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/show-tiling; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -O3 show-snps.cc tigrinc.o translate.o delta.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/show-snps; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/show-snps /usr/bin/g++ -O3 show-diff.cc tigrinc.o delta.o -o /«PKGBUILDDIR»/debian/tmp/usr/bin/show-diff; chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/show-diff make[3]: Leaving directory `/«PKGBUILDDIR»/src/tigr' cd /«PKGBUILDDIR»/scripts; /usr/bin/make all csh: not found make[3]: Entering directory `/«PKGBUILDDIR»/scripts' cp -a ../debian/sh-replacement-scripts/exact-tandems /«PKGBUILDDIR»/debian/tmp/usr/bin chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/exact-tandems /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /«PKGBUILDDIR»/debian/tmp/usr/bin/mapview chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/mapview /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /«PKGBUILDDIR»/debian/tmp/usr/bin/mummerplot chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/mummerplot /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /«PKGBUILDDIR»/debian/tmp/usr/bin/nucmer chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/nucmer /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /«PKGBUILDDIR»/debian/tmp/usr/bin/promer chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /«PKGBUILDDIR»/debian/tmp/usr/bin chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/run-mummer1 cp -a ../debian/sh-replacement-scripts/run-mummer3 /«PKGBUILDDIR»/debian/tmp/usr/bin chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/run-mummer3 /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /«PKGBUILDDIR»/debian/tmp/usr/bin/nucmer2xfig chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/nucmer2xfig /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /«PKGBUILDDIR»/debian/tmp/usr/bin/dnadiff chmod 755 /«PKGBUILDDIR»/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory `/«PKGBUILDDIR»/scripts' make[2]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make -C docs make[2]: Entering directory `/«PKGBUILDDIR»/docs' pdflatex maxmat3man This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./maxmat3man.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size12.clo)) (/usr/share/texmf-texlive/tex/latex/ntgclass/a4.sty) (/usr/share/texmf-texlive/tex/latex/base/alltt.sty) (/usr/share/texmf-texlive/tex/latex/tools/xspace.sty) (/usr/share/texmf-texlive/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) No file maxmat3man.aux. (/usr/share/texmf-texlive/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/omsptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 34 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 58--59 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 2. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 223--223 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf-texlive/f onts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (7 pages, 144009 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./maxmat3man.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size12.clo)) (/usr/share/texmf-texlive/tex/latex/ntgclass/a4.sty) (/usr/share/texmf-texlive/tex/latex/base/alltt.sty) (/usr/share/texmf-texlive/tex/latex/tools/xspace.sty) (/usr/share/texmf-texlive/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (./maxmat3man.aux) (/usr/share/texmf-texlive/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/omsptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 58--59 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 223--223 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information){/usr/share/texmf-texlive/f onts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (7 pages, 143311 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory `/«PKGBUILDDIR»/docs' make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make check csh: not found make[2]: Entering directory `/«PKGBUILDDIR»' ERROR: 'csh' C-shell not found check complete make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a debian/rules override_dh_prep make[1]: Entering directory `/«PKGBUILDDIR»' dh_prep -X debian/tmp make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/«PKGBUILDDIR»' mv /«PKGBUILDDIR»/debian/tmp/usr/bin/annotate /«PKGBUILDDIR»/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/«PKGBUILDDIR»' dh_compress -Xpdf make[1]: Leaving directory `/«PKGBUILDDIR»' dh_fixperms -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/mummer/usr/bin/combineMUMs contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-diff contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-coords contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-snps contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/prepro contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/mgaps contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/mummer-annotate contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta-filter contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/gaps contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-tiling contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/repeat-match contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-aligns contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/postpro contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/prenuc contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/postnuc contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package mummer: unused substitution variable ${perl:Depends} dh_md5sums -a dh_builddeb -a dpkg-deb: building package `mummer' in `../mummer_3.23~dfsg-2_armhf.deb'. dpkg-genchanges -B -mbuildd >../mummer_3.23~dfsg-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mummer-3.23~dfsg dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120504-2152 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ mummer_3.23~dfsg-2_armhf.changes: ───────────────────────────────── Format: 1.8 Date: Sat, 21 Apr 2012 22:43:17 +0200 Source: mummer Binary: mummer mummer-doc Architecture: armhf Version: 3.23~dfsg-2 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: mummer - Efficient sequence alignment of full genomes mummer-doc - Documentation for MUMmer Closes: 669521 Changes: mummer (3.23~dfsg-2) unstable; urgency=low . * debian/enable_building_with_tetex.patch: enable building with recent tetex by changing the layout slightly (s/a4wide/a4/) Closes: #669521 * debian/control: Standards-Version: 3.9.3 (no changes needed) * Debhelper 9 (control+compat) Checksums-Sha1: d8a18f7eebaea28cee62c7cc19c2b9c89ffc3c8b 439084 mummer_3.23~dfsg-2_armhf.deb Checksums-Sha256: 981efa6ca6e09094ce2540ad4673b8e6a1e6dea4b5fc73bf5d413678b915eabc 439084 mummer_3.23~dfsg-2_armhf.deb Files: 904468af43d307d6183b3d11fbb8cd94 439084 science optional mummer_3.23~dfsg-2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ mummer_3.23~dfsg-2_armhf.deb ──────────────────────────── new debian package, version 2.0. size 439084 bytes: control archive= 1826 bytes. 1101 bytes, 21 lines control 1937 bytes, 34 lines md5sums Package: mummer Version: 3.23~dfsg-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1072 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), perl, gawk Section: science Priority: optional Homepage: http://mummer.sourceforge.net/ Description: Efficient sequence alignment of full genomes MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. drwxr-xr-x root/root 0 2012-05-04 21:51 ./ drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/ drwxr-xr-x root/root 0 2012-05-04 21:52 ./usr/bin/ -rwxr-xr-x root/root 13024 2012-05-04 21:52 ./usr/bin/mummer-annotate -rwxr-xr-x root/root 84732 2012-05-04 21:52 ./usr/bin/show-coords -rwxr-xr-x root/root 41184 2012-05-04 21:52 ./usr/bin/combineMUMs -rwxr-xr-x root/root 766 2010-03-24 14:34 ./usr/bin/exact-tandems -rwxr-xr-x root/root 5884 2012-05-04 21:51 ./usr/bin/nucmer2xfig -rwxr-xr-x root/root 102132 2012-05-04 21:52 ./usr/bin/show-snps -rwxr-xr-x root/root 9168 2012-05-04 21:52 ./usr/bin/gaps -rwxr-xr-x root/root 11898 2012-05-04 21:51 ./usr/bin/promer -rwxr-xr-x root/root 981 2010-03-24 14:34 ./usr/bin/run-mummer1 -rwxr-xr-x root/root 107260 2012-05-04 21:52 ./usr/bin/show-tiling -rwxr-xr-x root/root 19420 2012-05-04 21:52 ./usr/bin/repeat-match -rwxr-xr-x root/root 61148 2012-05-04 21:52 ./usr/bin/delta-filter -rwxr-xr-x root/root 29757 2012-05-04 21:51 ./usr/bin/mapview -rwxr-xr-x root/root 96808 2012-05-04 21:52 ./usr/bin/show-aligns -rwxr-xr-x root/root 72760 2012-05-04 21:52 ./usr/bin/show-diff -rwxr-xr-x root/root 1115 2010-03-24 14:34 ./usr/bin/run-mummer3 -rwxr-xr-x root/root 26821 2012-05-04 21:51 ./usr/bin/dnadiff -rwxr-xr-x root/root 49694 2012-05-04 21:51 ./usr/bin/mummerplot -rwxr-xr-x root/root 13036 2012-05-04 21:52 ./usr/bin/mgaps -rwxr-xr-x root/root 12390 2012-05-04 21:51 ./usr/bin/nucmer -rwxr-xr-x root/root 43460 2012-05-04 21:52 ./usr/bin/mummer drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-04 21:52 ./usr/lib/mummer/ -rwxr-xr-x root/root 75652 2012-05-04 21:52 ./usr/lib/mummer/postpro -rwxr-xr-x root/root 8836 2012-05-04 21:52 ./usr/lib/mummer/prenuc -rwxr-xr-x root/root 15952 2012-05-04 21:52 ./usr/lib/mummer/prepro -rw-r--r-- root/root 760 2011-12-16 18:49 ./usr/lib/mummer/tandem-repeat.awk -rwxr-xr-x root/root 65312 2012-05-04 21:52 ./usr/lib/mummer/postnuc drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/ drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-04 21:52 ./usr/share/doc/mummer/ -rw-r--r-- root/root 11466 2011-12-16 18:49 ./usr/share/doc/mummer/README.gz -rw-r--r-- root/root 207 2007-11-07 12:36 ./usr/share/doc/mummer/README.Debian -rw-r--r-- root/root 2335 2012-04-21 14:23 ./usr/share/doc/mummer/changelog.Debian.gz -rw-r--r-- root/root 1456 2011-12-16 18:49 ./usr/share/doc/mummer/changelog.gz -rw-r--r-- root/root 1171 2012-02-01 20:28 ./usr/share/doc/mummer/copyright -rw-r--r-- root/root 327 2011-12-16 18:49 ./usr/share/doc/mummer/ACKNOWLEDGEMENTS drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-04 21:52 ./usr/share/man/man1/ -rw-r--r-- root/root 6256 2012-05-04 21:51 ./usr/share/man/man1/mummer.1.gz drwxr-xr-x root/root 0 2012-05-04 21:51 ./usr/share/perl5/ -rw-r--r-- root/root 54266 2011-12-16 18:49 ./usr/share/perl5/Foundation.pm lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/show-snps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/repeat-match.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/combineMUMs.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/show-aligns.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/run-mummer1.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/nucmer.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/mgaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/show-tiling.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/exact-tandems.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/promer.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/show-coords.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/gaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/mummer-annotate.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/dnadiff.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/mapview.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/nucmer2xfig.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/mummerplot.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/delta-filter.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2012-05-04 21:52 ./usr/share/man/man1/run-mummer3.1.gz -> mummer.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* ed* file* fontconfig-config* gettext* gettext-base* groff-base* html2text* intltool-debian* libcroco3* libexpat1* libffi5* libfontconfig1* libfreetype6* libglib2.0-0* libice6* libjpeg8* libkpathsea5* liblcms1* libmagic1* libopenjpeg2* libpaper-utils* libpaper1* libpcre3* libpipeline1* libpng12-0* libpoppler13* libsm6* libunistring0* libx11-6* libx11-data* libxau6* libxaw7* libxcb1* libxdmcp6* libxext6* libxml2* libxmu6* libxpm4* libxt6* luatex* man-db* mime-support* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-mummer-dummy* tex-common* texlive-base* texlive-binaries* texlive-common* texlive-doc-base* texlive-fonts-recommended* texlive-latex-base* texlive-latex-recommended* ttf-dejavu-core* x11-common* 0 upgraded, 0 newly installed, 57 to remove and 0 not upgraded. After this operation, 131 MB disk space will be freed. (Reading database ... 20616 files and directories currently installed.) Removing sbuild-build-depends-mummer-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing texlive-latex-recommended ... Purging configuration files for texlive-latex-recommended ... Removing texlive-latex-base ... Purging configuration files for texlive-latex-base ... Removing texlive-fonts-recommended ... Purging configuration files for texlive-fonts-recommended ... Removing texlive-base ... Purging configuration files for texlive-base ... Removing texlive-binaries ... Removing ed ... Removing file ... Removing luatex ... Removing libpoppler13 ... Purging configuration files for libpoppler13 ... Removing libfontconfig1:armhf ... Purging configuration files for libfontconfig1:armhf ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libexpat1:armhf ... Purging configuration files for libexpat1:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libfreetype6:armhf ... Purging configuration files for libfreetype6:armhf ... Removing libxaw7:armhf ... Purging configuration files for libxaw7:armhf ... Removing libxmu6:armhf ... Purging configuration files for libxmu6:armhf ... Removing libxt6:armhf ... Purging configuration files for libxt6:armhf ... Removing libsm6:armhf ... Purging configuration files for libsm6:armhf ... Removing libice6:armhf ... Purging configuration files for libice6:armhf ... Removing libjpeg8:armhf ... Removing libkpathsea5 ... Purging configuration files for libkpathsea5 ... Removing liblcms1 ... Purging configuration files for liblcms1 ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libopenjpeg2 ... Purging configuration files for libopenjpeg2 ... Removing libpaper-utils ... Removing libpaper1 ... Purging configuration files for libpaper1 ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libpng12-0:armhf ... Purging configuration files for libpng12-0:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxpm4:armhf ... Purging configuration files for libxpm4:armhf ... Removing libxext6:armhf ... Purging configuration files for libxext6:armhf ... Removing libx11-6:armhf ... Purging configuration files for libx11-6:armhf ... Removing libx11-data ... Removing libxcb1:armhf ... Purging configuration files for libxcb1:armhf ... Removing libxau6:armhf ... Purging configuration files for libxau6:armhf ... Removing libxdmcp6:armhf ... Purging configuration files for libxdmcp6:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing mime-support ... Purging configuration files for mime-support ... Removing sbuild-build-depends-core-dummy ... Removing texlive-doc-base ... Purging configuration files for texlive-doc-base ... Removing texlive-common ... Removing tex-common ... Purging configuration files for tex-common ... Removing ttf-dejavu-core ... Removing x11-common ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 9244 Build-Time: 299 Distribution: testing Install-Time: 197 Job: mummer_3.23~dfsg-2 Package: mummer Package-Time: 513 Source-Version: 3.23~dfsg-2 Space: 9244 Status: successful Version: 3.23~dfsg-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120504-2152 Build needed 00:08:33, 9244k disc space