public interface DomainSimilarityCalculator
Modifier and Type | Interface and Description |
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static class |
DomainSimilarityCalculator.Detailedness |
static class |
DomainSimilarityCalculator.GoAnnotationOutput |
Modifier and Type | Method and Description |
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java.util.SortedSet<DomainSimilarity> |
calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator,
java.util.List<GenomeWideCombinableDomains> cdc_list,
boolean ignore_domains_without_combinations_in_any_genome,
boolean ignore_domains_specific_to_one_genome) |
java.util.SortedSet<DomainSimilarity> calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator, java.util.List<GenomeWideCombinableDomains> cdc_list, boolean ignore_domains_without_combinations_in_any_genome, boolean ignore_domains_specific_to_one_genome)