public class NodeVisualization extends java.lang.Object implements PhylogenyData
Modifier and Type | Class and Description |
---|---|
static class |
NodeVisualization.NodeFill |
static class |
NodeVisualization.NodeShape |
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
SIZE_REF |
static java.lang.String |
SIZE_TYPE |
Constructor and Description |
---|
NodeVisualization() |
NodeVisualization(NodeVisualization.NodeShape shape,
NodeVisualization.NodeFill fill_type,
java.awt.Color border_color,
java.awt.Color fill_color,
double size,
double transparancy) |
Modifier and Type | Method and Description |
---|---|
java.lang.StringBuffer |
asSimpleText() |
java.lang.StringBuffer |
asText() |
PhylogenyData |
copy()
Creates a new PhylogenyData object with identical values as this
PhylogenyData.
|
java.awt.Color |
getBorderColor() |
java.awt.Color |
getFillColor() |
NodeVisualization.NodeFill |
getFillType() |
NodeVisualization.NodeShape |
getShape() |
double |
getSize() |
double |
getTransparancy() |
boolean |
isEqual(PhylogenyData data)
Compares this PhylogenyData to PhylogenyData data.
|
void |
setBorderColor(java.awt.Color border_color) |
void |
setFillColor(java.awt.Color fill_color) |
void |
setFillType(NodeVisualization.NodeFill fill_type) |
void |
setShape(NodeVisualization.NodeShape shape) |
void |
setSize(double size) |
void |
setTransparancy(double transparancy) |
java.lang.StringBuffer |
toNHX() |
void |
toPhyloXML(java.io.Writer writer,
int level,
java.lang.String indentation)
Writes a phyloXML representation of this phylogeny data.
|
java.lang.String |
toString() |
public static final java.lang.String SIZE_REF
public static final java.lang.String SIZE_TYPE
public NodeVisualization()
public NodeVisualization(NodeVisualization.NodeShape shape, NodeVisualization.NodeFill fill_type, java.awt.Color border_color, java.awt.Color fill_color, double size, double transparancy)
public java.lang.StringBuffer asSimpleText()
asSimpleText
in interface PhylogenyData
public java.lang.StringBuffer asText()
asText
in interface PhylogenyData
public PhylogenyData copy()
PhylogenyData
copy
in interface PhylogenyData
public java.awt.Color getBorderColor()
public java.awt.Color getFillColor()
public NodeVisualization.NodeFill getFillType()
public NodeVisualization.NodeShape getShape()
public double getSize()
public double getTransparancy()
public boolean isEqual(PhylogenyData data)
PhylogenyData
isEqual
in interface PhylogenyData
public void setBorderColor(java.awt.Color border_color)
public void setFillColor(java.awt.Color fill_color)
public void setFillType(NodeVisualization.NodeFill fill_type)
public void setShape(NodeVisualization.NodeShape shape)
public void setSize(double size)
public void setTransparancy(double transparancy)
public java.lang.StringBuffer toNHX()
toNHX
in interface PhylogenyData
public void toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation) throws java.io.IOException
PhylogenyData
toPhyloXML
in interface PhylogenyData
java.io.IOException
public java.lang.String toString()
toString
in class java.lang.Object