Package csb :: Package apps :: Module hhfrag :: Class HHfrag
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Class HHfrag

source code

object --+
         |
        HHfrag

Instance Methods
 
__init__(self, query, binary, database, logger=None)
x.__init__(...) initializes x; see help(type(x)) for signature
source code
 
build_combined_map(self, fragfile, top=25) source code
 
build_filtered_map(self) source code
 
build_fragment_map(self) source code
 
extract_fragments(self) source code
 
log(self, *a, **ka) source code
 
slice_query(self, min=6, max=21, step=3, cpu=None) source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables
  PDBS = 'pdbs25.hhm'
Properties
  aligner
  database
  pdbs25
  query

Inherited from object: __class__

Method Details

__init__(self, query, binary, database, logger=None)
(Constructor)

source code 

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)

Property Details

aligner

Get Method:
unreachable.aligner(self)
Set Method:
unreachable.aligner(self, value)

database

Get Method:
unreachable.database(self)
Set Method:
unreachable.database(self, value)

pdbs25

Get Method:
unreachable.pdbs25(self)

query

Get Method:
unreachable.query(self)