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A C D E G H I L M N O P S W misc
| allele | Extract Features of Genotype objects |
| allele.count | Extract Features of Genotype objects |
| allele.count.2.genotype | Undocumented functions |
| allele.count.genotype | Genotype or Haplotype Objects. |
| allele.names | Extract Features of Genotype objects |
| as.character.gene | Create and Manipulate Locus, Gene, and Marker Objects |
| as.character.locus | Create and Manipulate Locus, Gene, and Marker Objects |
| as.character.marker | Create and Manipulate Locus, Gene, and Marker Objects |
| as.factor | Undocumented functions |
| as.factor.allele.genotype | Undocumented functions |
| as.factor.default | Undocumented functions |
| as.factor.genotype | Undocumented functions |
| as.genotype | Genotype or Haplotype Objects. |
| as.genotype.allele.count | Genotype or Haplotype Objects. |
| as.genotype.character | Genotype or Haplotype Objects. |
| as.genotype.default | Genotype or Haplotype Objects. |
| as.genotype.factor | Genotype or Haplotype Objects. |
| as.genotype.genotype | Genotype or Haplotype Objects. |
| as.genotype.haplotype | Genotype or Haplotype Objects. |
| as.genotype.table | Genotype or Haplotype Objects. |
| as.haplotype | Genotype or Haplotype Objects. |
| carrier | Extract Features of Genotype objects |
| carrier.genotype | Extract Features of Genotype objects |
| ci.balance | Experimental Function to Correct Confidence Intervals At or Near Boundaries of the Parameter Space by 'Sliding' the Interval on the Quantile Scale. |
| diseq | Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium |
| diseq.ci | Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium |
| diseq.genotype | Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium |
| diseq.table | Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium |
| expectedGenotypes | Construct expected genotypes/haplotypes according to known allele variants |
| expectedHaplotypes | Construct expected genotypes/haplotypes according to known allele variants |
| gene | Create and Manipulate Locus, Gene, and Marker Objects |
| gene<- | Create and Manipulate Locus, Gene, and Marker Objects |
| geno.as.array | Undocumented functions |
| genotype | Genotype or Haplotype Objects. |
| genotypeOrder | Order/sort genotype/haplotype object |
| genotypeOrder<- | Order/sort genotype/haplotype object |
| getgene | Create and Manipulate Locus, Gene, and Marker Objects |
| getlocus | Create and Manipulate Locus, Gene, and Marker Objects |
| getmarker | Create and Manipulate Locus, Gene, and Marker Objects |
| gregorius | Probability of Observing All Alleles with a Given Frequency in a Sample of a Specified Size. |
| groupGenotype | Group genotype values |
| hap | Undocumented functions |
| hapambig | Undocumented functions |
| hapenum | Undocumented functions |
| hapfreq | Undocumented functions |
| haplotype | Genotype or Haplotype Objects. |
| hapmcmc | Undocumented functions |
| hapshuffle | Undocumented functions |
| heterozygote | Extract Features of Genotype objects |
| heterozygote.genotype | Genotype or Haplotype Objects. |
| homozygote | Extract Features of Genotype objects |
| homozygote.genotype | Genotype or Haplotype Objects. |
| HWE.chisq | Perform Chi-Square Test for Hardy-Weinberg Equilibrium |
| HWE.chisq.genotype | Perform Chi-Square Test for Hardy-Weinberg Equilibrium |
| HWE.exact | Exact Test of Hardy-Weinberg Equilibrium for 2-Allele Markers |
| HWE.test | Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium |
| HWE.test.data.frame | Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium |
| HWE.test.genotype | Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium |
| is.gene | Create and Manipulate Locus, Gene, and Marker Objects |
| is.genotype | Genotype or Haplotype Objects. |
| is.haplotype | Genotype or Haplotype Objects. |
| is.locus | Create and Manipulate Locus, Gene, and Marker Objects |
| is.marker | Create and Manipulate Locus, Gene, and Marker Objects |
| LD | Pairwise linkage disequilibrium between genetic markers. |
| LD.data.frame | Pairwise linkage disequilibrium between genetic markers. |
| LD.genotype | Pairwise linkage disequilibrium between genetic markers. |
| LDplot | Textual and graphical display of linkage disequilibrium (LD) objects |
| LDtable | Textual and graphical display of linkage disequilibrium (LD) objects |
| locus | Create and Manipulate Locus, Gene, and Marker Objects |
| locus<- | Create and Manipulate Locus, Gene, and Marker Objects |
| makeGenotypes | Convert columns in a dataframe to genotypes or haplotypes |
| makeHaplotypes | Convert columns in a dataframe to genotypes or haplotypes |
| marker | Create and Manipulate Locus, Gene, and Marker Objects |
| marker<- | Create and Manipulate Locus, Gene, and Marker Objects |
| mknum | Undocumented functions |
| mourant | Undocumented functions |
| nallele | Genotype or Haplotype Objects. |
| order | Order/sort genotype/haplotype object |
| order.genotype | Order/sort genotype/haplotype object |
| plot.genotype | Plot genotype object |
| plot.LD.data.frame | Textual and graphical display of linkage disequilibrium (LD) objects |
| power.casectrl | Depreciated functions |
| print.allele.count | Genotype or Haplotype Objects. |
| print.allele.genotype | Genotype or Haplotype Objects. |
| print.diseq | Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium |
| print.gene | Create and Manipulate Locus, Gene, and Marker Objects |
| print.genotype | Genotype or Haplotype Objects. |
| print.HWE.test | Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium |
| print.LD | Textual and graphical display of linkage disequilibrium (LD) objects |
| print.LD.data.frame | Textual and graphical display of linkage disequilibrium (LD) objects |
| print.locus | Create and Manipulate Locus, Gene, and Marker Objects |
| print.marker | Create and Manipulate Locus, Gene, and Marker Objects |
| print.summary.genotype | Allele and Genotype Frequency from a Genotype or Haplotype Object |
| print.summary.LD.data.frame | Textual and graphical display of linkage disequilibrium (LD) objects |
| shortsummary.genotype | Undocumented functions |
| sort.genotype | Order/sort genotype/haplotype object |
| summary.genotype | Allele and Genotype Frequency from a Genotype or Haplotype Object |
| summary.LD.data.frame | Textual and graphical display of linkage disequilibrium (LD) objects |
| write.marker.file | Create genetics data files |
| write.pedigree.file | Create genetics data files |
| write.pop.file | Create genetics data files |
| %in% | Genotype or Haplotype Objects. |
| %in%.default | Genotype or Haplotype Objects. |
| %in%.genotype | Genotype or Haplotype Objects. |
| %in%.haplotype | Genotype or Haplotype Objects. |
| ==.genotype | Genotype or Haplotype Objects. |
| ==.haplotype | Genotype or Haplotype Objects. |
| [.genotype | Genotype or Haplotype Objects. |
| [.haplotype | Genotype or Haplotype Objects. |
| [<-.genotype | Genotype or Haplotype Objects. |
| [<-.haplotype | Genotype or Haplotype Objects. |