sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build00.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ profnet 1.0.21-1 (armhf) 22 May 2012 11:19 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: profnet Version: 1.0.21-1 Source Version: 1.0.21-1 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/profnet-s8vqi6/profnet-1.0.21' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/profnet-s8vqi6' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-7e5cf045-4d3a-44cc-ae18-a69bf57f143c' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'profnet' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/profnet/trunk/ Need to get 263 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main profnet 1.0.21-1 (dsc) [2463 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main profnet 1.0.21-1 (tar) [256 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main profnet 1.0.21-1 (diff) [4475 B] Fetched 263 kB in 0s (4136 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-k35qZT/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 14 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10670 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), gfortran, rsync Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), gfortran, rsync dpkg-deb: building package `sbuild-build-depends-profnet-dummy' in `/«BUILDDIR»/resolver-XOfGMB/apt_archive/sbuild-build-depends-profnet-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install profnet build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libcroco3 libffi5 libgfortran3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libpopt0 libunistring0 libxml2 man-db po-debconf rsync Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff less www-browser libmail-box-perl openssh-client openssh-server Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libcroco3 libffi5 libgfortran3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libpopt0 libunistring0 libxml2 man-db po-debconf rsync sbuild-build-depends-profnet-dummy 0 upgraded, 24 newly installed, 0 to remove and 14 not upgraded. Need to get 352 kB/14.9 MB of archives. After this operation, 37.9 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main rsync armhf 3.0.9-1 [352 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 352 kB in 0s (4950 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10670 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libpopt0:armhf. Unpacking libpopt0:armhf (from .../libpopt0_1.16-4_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.2-1_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libgfortran3:armhf. Unpacking libgfortran3:armhf (from .../libgfortran3_4.7.0-1.1+rpi_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package gfortran-4.6. Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1.1+rpi2_armhf.deb) ... Selecting previously unselected package gfortran. Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_armhf.deb) ... Selecting previously unselected package rsync. Unpacking rsync (from .../rsync_3.0.9-1_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-profnet-dummy. Unpacking sbuild-build-depends-profnet-dummy (from .../sbuild-build-depends-profnet-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libpopt0:armhf (1.16-4) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.2-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libgfortran3:armhf (4.7.0-1.1+rpi) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up gfortran-4.6 (4.6.3-1.1+rpi2) ... Setting up gfortran (4:4.6.2-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up rsync (3.0.9-1) ... update-rc.d: using dependency based boot sequencing All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of restart. Setting up sbuild-build-depends-profnet-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.12-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-32 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1.1+rpi2 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libgfortran3_4.7.0-1.1+rpi libglib2.0-0_2.32.2-1 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-7 libncursesw5_5.9-7 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpopt0_1.16-4 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-32 ncurses-base_5.9-6 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 rsync_3.0.9-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-profnet-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon Nov 28 14:51:05 2011 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./profnet_1.0.21-1.dsc dpkg-source: info: extracting profnet in profnet-1.0.21 dpkg-source: info: unpacking profnet_1.0.21.orig.tar.gz dpkg-source: info: unpacking profnet_1.0.21-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-7e5cf045-4d3a-44cc-ae18-a69bf57f143c SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package profnet dpkg-buildpackage: source version 1.0.21-1 dpkg-source --before-build profnet-1.0.21 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh_testdir dh_testroot rm -f build-stamp configure-stamp # Add here commands to clean up after the build process. /usr/bin/make clean make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make -C src clean make[2]: Entering directory `/«PKGBUILDDIR»/src' rm -f *.o profnet_prof make[2]: Leaving directory `/«PKGBUILDDIR»/src' /usr/bin/make -C src-phd clean make[2]: Entering directory `/«PKGBUILDDIR»/src-phd' rm -f *.o profphd_net make[2]: Leaving directory `/«PKGBUILDDIR»/src-phd' rm -f *.[0123456789].gz make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean dpkg-buildpackage: warning: debian/rules must be updated to support the 'build-arch' and 'build-indep' targets (at least 'build-arch' seems to be missing) debian/rules build dh_testdir ****************** ** M A K E ** ****************** # Add here commands to compile the package. make patch make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p bval_dir && rsync -avC src/. ./bval_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d bval_dir < bval.patch && touch bval_dir/patch_stamp patching file Makefile patching file prof.f patching file profPar.f mkdir -p chop_dir && rsync -avC src/. ./chop_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d chop_dir < chop.patch && touch chop_dir/patch_stamp patching file Makefile mkdir -p con_dir && rsync -avC src/. ./con_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d con_dir < con.patch && touch con_dir/patch_stamp patching file Makefile patching file profPar.f mkdir -p isis_dir && rsync -avC src/. ./isis_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d isis_dir < isis.patch && touch isis_dir/patch_stamp patching file Makefile patching file profPar.f mkdir -p md_dir && rsync -avC src/. ./md_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d md_dir < md.patch && touch md_dir/patch_stamp patching file Makefile patching file prof.f patching file profPar.f mkdir -p norsnet_dir && rsync -avC src/. ./norsnet_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d norsnet_dir < norsnet.patch && touch norsnet_dir/patch_stamp patching file Makefile patching file prof.f patching file profPar.f mkdir -p prof_dir && rsync -avC src/. ./prof_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d prof_dir < prof.patch && touch prof_dir/patch_stamp mkdir -p snapfun_dir && rsync -avC src/. ./snapfun_dir/. sending incremental file list ./ Doc-lib-nn Doc-nn.txt Makefile PROFin.dat RUN-special ReadMe-mac compile_macintel.csh lib-LINUX.f lib-prof.f lib-sys-ALPHA.f lib-sys-LINUX.f lib-sys-MAC.f lib-sys-MACIBM.f lib-sys-MACINTEL.f lib-sys-SGI64.f make.ALPHA make.LINUX make.LINUX-pgi make.MAC make.MACIBM make.MACINTEL make.SGI32 make.SGI64 make.SGI64_no64 prof.f profPar.f tmp.f sent 370207 bytes received 528 bytes 741470.00 bytes/sec total size is 368430 speedup is 0.99 patch -p 1 -E -d snapfun_dir < snapfun.patch && touch snapfun_dir/patch_stamp patching file Makefile patching file Makefile.orig patching file profPar.f make[1]: Leaving directory `/«PKGBUILDDIR»' make make[1]: Entering directory `/«PKGBUILDDIR»' make -C bval_dir make[2]: Entering directory `/«PKGBUILDDIR»/bval_dir' --- making profnet_bval gfortran -o profnet_bval -O3 -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (5/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (9/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/bval_dir' make -C chop_dir make[2]: Entering directory `/«PKGBUILDDIR»/chop_dir' --- making profnet_chop gfortran -o profnet_chop -O3 -fbounds-check -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/chop_dir' make -C con_dir make[2]: Entering directory `/«PKGBUILDDIR»/con_dir' --- making profnet_con gfortran -o profnet_con -O3 -fbounds-check -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/con_dir' make -C isis_dir make[2]: Entering directory `/«PKGBUILDDIR»/isis_dir' --- making profnet_isis gfortran -o profnet_isis -O3 -fbounds-check -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/isis_dir' make -C md_dir make[2]: Entering directory `/«PKGBUILDDIR»/md_dir' --- making profnet_md gfortran -o profnet_md -O3 -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (5/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (9/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/md_dir' make -C norsnet_dir make[2]: Entering directory `/«PKGBUILDDIR»/norsnet_dir' --- making profnet_norsnet gfortran -o profnet_norsnet -O3 -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (5/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC,VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (9/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/norsnet_dir' make -C prof_dir make[2]: Entering directory `/«PKGBUILDDIR»/prof_dir' --- making profnet_prof gfortran -o profnet_prof -O3 -fbounds-check -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/prof_dir' make -C snapfun_dir make[2]: Entering directory `/«PKGBUILDDIR»/snapfun_dir' --- making profnet_snapfun gfortran -o profnet_snapfun -O3 -fbounds-check -Wuninitialized -Wall -Wno-unused prof.f lib-prof.f lib-sys-LINUX.f prof.f:527.28: ERRBINSTOP= 0.95 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) prof.f:1853.24: CALL RDPAR_ERR('NUMIN ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1) prof.f:1856.24: CALL RDPAR_ERR('NUMHID ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1859.24: CALL RDPAR_ERR('NUMOUT ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1864.24: CALL RDPAR_ERR('NUMSAM ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1870.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1873.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1876.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1879.24: CALL RDPAR_ERR(HC // ' ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1) prof.f:1885.24: CALL RDPAR_ERR('STPSWPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1) prof.f:1888.24: CALL RDPAR_ERR('STPMAX ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1891.24: CALL RDPAR_ERR('STPINF ',VARIN) 1 Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1) prof.f:1334.45: SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC) 1 Warning: Unused dummy argument 'numsamloc' at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/snapfun_dir' pod2man -c 'User Commands' -r "1.0.21-" profnet.pod | gzip -c > profnet.1.gz make -C src-phd make[2]: Entering directory `/«PKGBUILDDIR»/src-phd' gfortran -O3 -fbounds-check -Wall -o profphd_net phd.f lib-phd.f phd.f:8107.5: 19991 CONTINUE 1 Warning: Label 19991 at (1) defined but not used phd.f:1437.40: CHARACTER*1 FC_REXP_TO_3STCHAR,FC_REXPI_TO_3STCHAR 1 Warning: Unused variable 'fc_rexp_to_3stchar' declared at (1) phd.f:3923.30: + ACC,NOCC,VAR,ALISEQ,ALIPOINTER, 1 Warning: Unused dummy argument 'aliseq' at (1) phd.f:3922.58: + PDBNO,PDBSEQ,CHAINID,SECSTR,COLS,SHEETLABEL,BP1,BP2, 1 Warning: Unused dummy argument 'bp1' at (1) phd.f:3922.62: + PDBNO,PDBSEQ,CHAINID,SECSTR,COLS,SHEETLABEL,BP1,BP2, 1 Warning: Unused dummy argument 'bp2' at (1) phd.f:3924.36: + SEQPROF,NDEL,NINS,ENTROPY,RELENT,CONSWEIGHT, 1 Warning: Unused dummy argument 'entropy' at (1) phd.f:3916.31: + MAXRES,MAXALIGNS_LOC,MAXCORE_LOC, 1 Warning: Unused dummy argument 'maxaligns_loc' at (1) phd.f:3916.43: + MAXRES,MAXALIGNS_LOC,MAXCORE_LOC, 1 Warning: Unused dummy argument 'maxcore_loc' at (1) phd.f:3916.17: + MAXRES,MAXALIGNS_LOC,MAXCORE_LOC, 1 Warning: Unused dummy argument 'maxres' at (1) phd.f:3924.43: + SEQPROF,NDEL,NINS,ENTROPY,RELENT,CONSWEIGHT, 1 Warning: Unused dummy argument 'relent' at (1) phd.f:3922.54: + PDBNO,PDBSEQ,CHAINID,SECSTR,COLS,SHEETLABEL,BP1,BP2, 1 Warning: Unused dummy argument 'sheetlabel' at (1) phd.f:3923.23: + ACC,NOCC,VAR,ALISEQ,ALIPOINTER, 1 Warning: Unused dummy argument 'var' at (1) phd.f:64.41: REAL TIME0,FRTIME_SECNDS 1 Warning: Unused variable 'frtime_secnds' declared at (1) make[2]: Leaving directory `/«PKGBUILDDIR»/src-phd' make[1]: Leaving directory `/«PKGBUILDDIR»' #docbook-to-man debian/profnet.sgml > profnet.1 touch build-stamp fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_prep dh_installdirs ******************* ** I N S T A L L ** ******************* # Add here commands to install the package into debian/profnet. /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-bval prefix=/usr install-bval make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-bval/usr/bin && \ cp -a bval_dir/profnet_bval \ /«PKGBUILDDIR»/debian/profnet-bval/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-bval/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-bval/usr/share/man/man1/profnet_bval.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-chop prefix=/usr install-chop make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-chop/usr/bin && \ cp -a chop_dir/profnet_chop \ /«PKGBUILDDIR»/debian/profnet-chop/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-chop/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-chop/usr/share/man/man1/profnet_chop.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-con prefix=/usr install-con make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-con/usr/bin && \ cp -a con_dir/profnet_con \ /«PKGBUILDDIR»/debian/profnet-con/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-con/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-con/usr/share/man/man1/profnet_con.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-isis prefix=/usr install-isis make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-isis/usr/bin && \ cp -a isis_dir/profnet_isis \ /«PKGBUILDDIR»/debian/profnet-isis/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-isis/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-isis/usr/share/man/man1/profnet_isis.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-md prefix=/usr install-md make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-md/usr/bin && \ cp -a md_dir/profnet_md \ /«PKGBUILDDIR»/debian/profnet-md/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-md/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-md/usr/share/man/man1/profnet_md.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-norsnet prefix=/usr install-norsnet make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-norsnet/usr/bin && \ cp -a norsnet_dir/profnet_norsnet \ /«PKGBUILDDIR»/debian/profnet-norsnet/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-norsnet/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-norsnet/usr/share/man/man1/profnet_norsnet.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-prof prefix=/usr install-prof make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-prof/usr/bin && \ cp -a prof_dir/profnet_prof \ /«PKGBUILDDIR»/debian/profnet-prof/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-prof/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-prof/usr/share/man/man1/profnet_prof.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profnet-snapfun prefix=/usr install-snapfun make[1]: Entering directory `/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/profnet-snapfun/usr/bin && \ cp -a snapfun_dir/profnet_snapfun \ /«PKGBUILDDIR»/debian/profnet-snapfun/usr/bin/ mkdir -p /«PKGBUILDDIR»/debian/profnet-snapfun/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profnet-snapfun/usr/share/man/man1/profnet_snapfun.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/profphd-net prefix=/usr install-phd make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make -C src-phd install make[2]: Entering directory `/«PKGBUILDDIR»/src-phd' mkdir -p /«PKGBUILDDIR»/debian/profphd-net/usr/bin && \ cp profphd_net /«PKGBUILDDIR»/debian/profphd-net/usr/bin/ rm -f /«PKGBUILDDIR»/debian/profphd-net/usr/bin/phd1994 && ln -s profphd_net /«PKGBUILDDIR»/debian/profphd-net/usr/bin/phd1994 make[2]: Leaving directory `/«PKGBUILDDIR»/src-phd' mkdir -p /«PKGBUILDDIR»/debian/profphd-net/usr/share/man/man1 && cp profnet.1.gz /«PKGBUILDDIR»/debian/profphd-net/usr/share/man/man1/profphd_net.1.gz rm -f /«PKGBUILDDIR»/debian/profphd-net/usr/share/man/man1/phd1994.1.gz && ln -s profphd_net.1.gz /«PKGBUILDDIR»/debian/profphd-net/usr/share/man/man1/phd1994.1.gz make[1]: Leaving directory `/«PKGBUILDDIR»' dh_testdir dh_testroot dh_installchangelogs ChangeLog dh_installdocs dh_installexamples dh_installman dh_link dh_strip --dbg-package=profnet-dbg dh_compress dh_fixperms dh_installdeb dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/profphd-net/usr/bin/profphd_net was not linked against libgcc_s.so.1 (it uses none of the library's symbols). for i in $(sed -n '/^Package:/s/^.* //p' debian/control); do \ cat debian/substvars >> debian/$i.substvars; \ done; dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package `profnet-bval' in `../profnet-bval_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-chop' in `../profnet-chop_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-con' in `../profnet-con_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-isis' in `../profnet-isis_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-md' in `../profnet-md_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-norsnet' in `../profnet-norsnet_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-prof' in `../profnet-prof_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-snapfun' in `../profnet-snapfun_1.0.21-1_armhf.deb'. dpkg-deb: building package `profphd-net' in `../profphd-net_1.0.21-1_armhf.deb'. dpkg-deb: building package `profnet-dbg' in `../profnet-dbg_1.0.21-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../profnet_1.0.21-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build profnet-1.0.21 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120522-1131 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ profnet_1.0.21-1_armhf.changes: ─────────────────────────────── Format: 1.8 Date: Tue, 21 Jun 2011 16:15:37 +0200 Source: profnet Binary: profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd-net profnet-dbg Architecture: armhf Version: 1.0.21-1 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Laszlo Kajan Description: profnet-bval - neural network architecture for profbval profnet-chop - neural network architecture for profchop profnet-con - neural network architecture for profcon profnet-dbg - debug files for profnet packages profnet-isis - neural network architecture for profisis profnet-md - neural network architecture for metadisorder profnet-norsnet - neural network architecture for norsnet profnet-prof - neural network architecture for profacc profnet-snapfun - neural network architecture for snapfun profphd-net - neural network architecture for profphd Changes: profnet (1.0.21-1) unstable; urgency=low . * New upstream release Checksums-Sha1: e8beeb99749b1e4e4fe0714ad16b4841927435f3 47086 profnet-bval_1.0.21-1_armhf.deb 4211be724af803a6c3b4cde055de35ac2bdd6e26 58322 profnet-chop_1.0.21-1_armhf.deb aee1d82772985ec7913818d64b6e972143badc35 56712 profnet-con_1.0.21-1_armhf.deb 9a17780d2816677e380c40cc64c9206afaa71709 57912 profnet-isis_1.0.21-1_armhf.deb 72ed8fbd7ea7a54d7fafdd62c845ad56e33adf47 46088 profnet-md_1.0.21-1_armhf.deb 280a4bcc9eea26b5bfef784718eca1dfec0f6b9d 46086 profnet-norsnet_1.0.21-1_armhf.deb c0e13e0d29ce318cc8cfac028ec73a96e7b46399 58330 profnet-prof_1.0.21-1_armhf.deb 97c5f1688e28c7cd79a02597e2495daa8f2a2972 54878 profnet-snapfun_1.0.21-1_armhf.deb 3924ea42ce5a389cf1cf0f6ff02c5b9a96b8ffdf 177334 profphd-net_1.0.21-1_armhf.deb d4878b762aa426c7c51f5e088739b598aa98d0fc 24856 profnet-dbg_1.0.21-1_armhf.deb Checksums-Sha256: e3cfe81ca02527e86db93f05fb5059956f53dde721c7d7e769153febdd74f6a6 47086 profnet-bval_1.0.21-1_armhf.deb 2076a4d812de40c7e72538225f790d4c484fa0b15ff540a431742af27edc71ec 58322 profnet-chop_1.0.21-1_armhf.deb a6b87f57ba20affeb79df119185459f021137ab472a2bd402ba54728348dab24 56712 profnet-con_1.0.21-1_armhf.deb 303a47fe0388bf48c2264481d8d2f08b60b1f7410f9a9d93ae0c5999a1272cbe 57912 profnet-isis_1.0.21-1_armhf.deb 3e4ee46ad677d0f8bf8814db6a69b80068012d9be8b861354cd11a65de118995 46088 profnet-md_1.0.21-1_armhf.deb 53a8adb46956a5449e25f9942d5c47597286184a6fa7f91da8a0d866ee090801 46086 profnet-norsnet_1.0.21-1_armhf.deb 0aafd562b373a0def96ecef175a0c28d8fe990c6a4baa77e8e15b2987436ba90 58330 profnet-prof_1.0.21-1_armhf.deb 11e1535ab2f01f6f489c2d7294b6f7a0cb4893c6b291266d0d76b25a74190cfc 54878 profnet-snapfun_1.0.21-1_armhf.deb 8d3d5ca8efb8e951d2eb503aabb6899efb115eec042463f5a6f5c01b9cd67893 177334 profphd-net_1.0.21-1_armhf.deb 06f2de753ad6c11a569d5a3bbed5b036a91111955a01feb02b531972ed513ce4 24856 profnet-dbg_1.0.21-1_armhf.deb Files: d72588ce0bdaa7372ec76460ff74ad28 47086 science extra profnet-bval_1.0.21-1_armhf.deb 0582d57a602085b45d7e7d207f67c57c 58322 science extra profnet-chop_1.0.21-1_armhf.deb dfd725882478e81d7bfcf804cad32d11 56712 science extra profnet-con_1.0.21-1_armhf.deb 0fc5583842690215c1d0a3094d15315e 57912 science extra profnet-isis_1.0.21-1_armhf.deb 3f4f67e8fd2a72f5d214a2eeb402f6e7 46088 science extra profnet-md_1.0.21-1_armhf.deb 73f14e07cfb02f953b5fcdfa03cee201 46086 science extra profnet-norsnet_1.0.21-1_armhf.deb 9937c18803c312795499c9042617cf41 58330 science extra profnet-prof_1.0.21-1_armhf.deb 2446f369d6b7f7db5b3edb9b8069ec2f 54878 science extra profnet-snapfun_1.0.21-1_armhf.deb 62b177dd3547fdb3acd46235041f9c83 177334 science extra profphd-net_1.0.21-1_armhf.deb ee6ad67e854c658c3e86ac1ad567fbc2 24856 debug extra profnet-dbg_1.0.21-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ profnet-bval_1.0.21-1_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 47086 bytes: control archive= 838 bytes. 825 bytes, 18 lines control 427 bytes, 6 lines md5sums Package: profnet-bval Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 127 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: profbval Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for profbval Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for profbval. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-bval/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-bval/changelog.Debian.gz -rw-r--r-- root/root 1960 2011-06-16 06:20 ./usr/share/doc/profnet-bval/README.Debian -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-bval/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-bval/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_bval.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 83960 2012-05-22 11:28 ./usr/bin/profnet_bval profnet-chop_1.0.21-1_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 58322 bytes: control archive= 804 bytes. 825 bytes, 18 lines control 352 bytes, 5 lines md5sums Package: profnet-chop Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 159 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: profchop Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for profchop Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for profchop. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-chop/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-chop/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-chop/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-chop/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_chop.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 118696 2012-05-22 11:28 ./usr/bin/profnet_chop profnet-con_1.0.21-1_armhf.deb ────────────────────────────── new debian package, version 2.0. size 56712 bytes: control archive= 803 bytes. 821 bytes, 18 lines control 347 bytes, 5 lines md5sums Package: profnet-con Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 157 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: profcon Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for profcon Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for profcon. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-con/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-con/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-con/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-con/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_con.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 116596 2012-05-22 11:28 ./usr/bin/profnet_con profnet-isis_1.0.21-1_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 57912 bytes: control archive= 806 bytes. 825 bytes, 18 lines control 352 bytes, 5 lines md5sums Package: profnet-isis Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 158 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: profisis Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for profisis Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for profisis. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-isis/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-isis/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-isis/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-isis/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_isis.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 117452 2012-05-22 11:28 ./usr/bin/profnet_isis profnet-md_1.0.21-1_armhf.deb ───────────────────────────── new debian package, version 2.0. size 46088 bytes: control archive= 811 bytes. 835 bytes, 18 lines control 342 bytes, 5 lines md5sums Package: profnet-md Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 125 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: metadisorder Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for metadisorder Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for metadisorder. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-md/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-md/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-md/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-md/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_md.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 83984 2012-05-22 11:28 ./usr/bin/profnet_md profnet-norsnet_1.0.21-1_armhf.deb ────────────────────────────────── new debian package, version 2.0. size 46086 bytes: control archive= 807 bytes. 825 bytes, 18 lines control 367 bytes, 5 lines md5sums Package: profnet-norsnet Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 125 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: norsnet Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for norsnet Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for norsnet. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-norsnet/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-norsnet/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-norsnet/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-norsnet/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_norsnet.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 83960 2012-05-22 11:28 ./usr/bin/profnet_norsnet profnet-prof_1.0.21-1_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 58330 bytes: control archive= 815 bytes. 834 bytes, 18 lines control 352 bytes, 5 lines md5sums Package: profnet-prof Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 159 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: profphd Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for profacc Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for profsec and profacc. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-prof/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-prof/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-prof/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-prof/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_prof.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 118696 2012-05-22 11:28 ./usr/bin/profnet_prof profnet-snapfun_1.0.21-1_armhf.deb ────────────────────────────────── new debian package, version 2.0. size 54878 bytes: control archive= 807 bytes. 825 bytes, 18 lines control 367 bytes, 5 lines md5sums Package: profnet-snapfun Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 150 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.6) Recommends: snapfun Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for snapfun Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for snapfun. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-snapfun/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-snapfun/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-snapfun/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-snapfun/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profnet_snapfun.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 109836 2012-05-22 11:28 ./usr/bin/profnet_snapfun profphd-net_1.0.21-1_armhf.deb ────────────────────────────── new debian package, version 2.0. size 177334 bytes: control archive= 804 bytes. 821 bytes, 18 lines control 347 bytes, 5 lines md5sums Package: profphd-net Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 449 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.6) Recommends: profphd Section: science Priority: extra Homepage: http://www.predictprotein.org/ Description: neural network architecture for profphd Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the neural network architecture for profphd. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profphd-net/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profphd-net/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profphd-net/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profphd-net/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2635 2012-05-22 11:28 ./usr/share/man/man1/profphd_net.1.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/bin/ -rwxr-xr-x root/root 415608 2012-05-22 11:28 ./usr/bin/profphd_net lrwxrwxrwx root/root 0 2012-05-22 11:28 ./usr/share/man/man1/phd1994.1.gz -> profphd_net.1.gz lrwxrwxrwx root/root 0 2012-05-22 11:28 ./usr/bin/phd1994 -> profphd_net profnet-dbg_1.0.21-1_armhf.deb ────────────────────────────── new debian package, version 2.0. size 24856 bytes: control archive= 980 bytes. 980 bytes, 17 lines control 846 bytes, 12 lines md5sums Package: profnet-dbg Source: profnet Version: 1.0.21-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 139 Depends: profnet-bval (= 1.0.21-1), profnet-chop (= 1.0.21-1), profnet-con (= 1.0.21-1), profnet-isis (= 1.0.21-1), profnet-md (= 1.0.21-1), profnet-norsnet (= 1.0.21-1), profnet-prof (= 1.0.21-1), profnet-snapfun (= 1.0.21-1), profphd-net (= 1.0.21-1) Section: debug Priority: extra Homepage: http://www.predictprotein.org/ Description: debug files for profnet packages Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. This package contains the stripped debugging symbols for profnet binaries. drwxr-xr-x root/root 0 2012-05-22 11:29 ./ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/share/doc/profnet-dbg/ -rw-r--r-- root/root 824 2011-11-28 06:48 ./usr/share/doc/profnet-dbg/changelog.Debian.gz -rw-r--r-- root/root 1914 2011-07-09 03:02 ./usr/share/doc/profnet-dbg/copyright -rw-r--r-- root/root 1320 2011-06-21 07:14 ./usr/share/doc/profnet-dbg/changelog.gz drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/lib/debug/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/lib/debug/usr/ drwxr-xr-x root/root 0 2012-05-22 11:28 ./usr/lib/debug/usr/bin/ -rw-r--r-- root/root 10043 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_norsnet -rw-r--r-- root/root 10458 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_chop -rw-r--r-- root/root 10458 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_con -rw-r--r-- root/root 10458 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_isis -rw-r--r-- root/root 10043 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_md -rw-r--r-- root/root 10426 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_snapfun -rw-r--r-- root/root 10043 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_bval -rw-r--r-- root/root 14463 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profphd_net -rw-r--r-- root/root 10458 2012-05-22 11:28 ./usr/lib/debug/usr/bin/profnet_prof ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 14 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* file* gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text* intltool-debian* libcroco3* libffi5* libgfortran3* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libpopt0* libunistring0* libxml2* man-db* po-debconf* rsync* sbuild-build-depends-core-dummy* sbuild-build-depends-profnet-dummy* 0 upgraded, 0 newly installed, 25 to remove and 14 not upgraded. After this operation, 37.9 MB disk space will be freed. (Reading database ... 12148 files and directories currently installed.) Removing sbuild-build-depends-profnet-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing gfortran ... Removing gfortran-4.6 ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libgfortran3:armhf ... Purging configuration files for libgfortran3:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing rsync ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for rsync ... Removing libpopt0:armhf ... Purging configuration files for libpopt0:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 9704 Build-Time: 624 Distribution: testing Install-Time: 67 Job: profnet_1.0.21-1 Package: profnet Package-Time: 711 Source-Version: 1.0.21-1 Space: 9704 Status: successful Version: 1.0.21-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120522-1131 Build needed 00:11:51, 9704k disc space