sbuild (Debian sbuild) 0.63.1 (31 May 2012) on build05.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ altree 1.2.1-1 (armhf) 27 Jun 2012 11:47 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: altree Version: 1.2.1-1 Source Version: 1.2.1-1 Distribution: testing Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf W: line 7 [testing-armhf-sbuild]: Deprecated key ‘script-config’ used I: This option will be removed in the future; please update your configuration I: NOTICE: Log filtering will replace 'build/altree-M4Ovy5/altree-1.2.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/altree-M4Ovy5' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-6912a266-672a-4767-aabd-6a7284ca919b' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://repo.raspbian.lan testing InRelease [9318 B] Get:2 http://repo.raspbian.lan testing/main Sources [6129 kB] Get:3 http://repo.raspbian.lan testing/main armhf Packages [7119 kB] Ign http://repo.raspbian.lan testing/main Translation-en Fetched 13.3 MB in 41s (320 kB/s) Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'altree' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/altree/trunk/ Need to get 498 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main altree 1.2.1-1 (dsc) [2260 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main altree 1.2.1-1 (tar) [491 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main altree 1.2.1-1 (diff) [4399 B] Fetched 498 kB in 0s (2213 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-B4qIYc/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10660 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libpdl-stats-perl Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libpdl-stats-perl dpkg-deb: building package `sbuild-build-depends-altree-dummy' in `/«BUILDDIR»/resolver-Cn7Fhi/apt_archive/sbuild-build-depends-altree-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install altree build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser bash-completion bsdmainutils debhelper ed fftw2 file fontconfig-config freeglut3 gawk gettext gettext-base ghostscript groff-base gsfonts html2text intltool-debian latex-make libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libblas3gf libcroco3 libcsiro0 libcups2 libcupsimage2 libdbus-1-3 libdrm2 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcrypt11 libgd2-xpm libgettextpo0 libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libgnutls26 libgpg-error0 libgraphite3 libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libhdf4-0-alt libibverbs1 libice6 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms1 liblcms2-2 libltdl7 libmagic1 libmath-tamuanova-perl libopengl-perl libopenjpeg2 libopenmpi1.3 libp11-kit0 libpaper-utils libpaper1 libpcre3 libpdl-stats-perl libpipeline1 libplplot11 libpng12-0 libpoppler19 libproj0 libptexenc1 libqhull5 libqsastime0 libsigsegv2 libsm6 libsqlite3-0 libssl1.0.0 libtamuanova-0.2 libtasn1-3 libterm-readkey-perl libtiff4 libtorque2 libunistring0 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxmu6 libxpm4 libxt6 libxxf86vm1 luatex man-db mime-support pdl po-debconf poppler-data preview-latex-style proj-data python python-minimal python2.7 python2.7-minimal tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures transfig ttf-dejavu-core ttf-marvosym x11-common Suggested packages: wamerican wordlist whois vacation dh-make fftw-dev mpi-defaults-bin gawk-doc gettext-doc ghostscript-cups ghostscript-x hpijs groff cups-common rng-tools libgd-tools gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user libhdf4-doc libhdf4-alt-dev hdf4-tools libnetcdf4 libjasper-runtime liblcms-utils liblcms2-utils plplot11-driver-xwin plplot11-driver-gd plplot11-driver-cairo plplot11-driver-qt plplot11-driver-wxwidgets plplot-tcl proj-bin less www-browser libpgplot-perl netpbm imagemagick libastro-fits-header-perl libinline-perl libplplot-dev doc-base libextutils-f77-perl libdevel-repl-perl libmail-box-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core python-doc python-tk python2.7-doc binfmt-support perl-tk xpdf-reader pdf-viewer gv postscript-viewer libfile-which-perl dot2tex xfig Recommended packages: curl wget lynx-cur autopoint inkscape dbus libgl1-mesa-dri libglib2.0-data shared-mime-info fonts-droid krb5-locales xml-core texlive-luatex libterm-readline-gnu-perl libterm-readline-perl-perl libmail-sendmail-perl lmodern ruby wish texlive-fonts-recommended-doc tex-gyre tipa texlive-latex-base-doc texlive-latex-extra-doc latex-xcolor texlive-latex-recommended-doc latex-beamer prosper texlive-pictures-doc pgf The following NEW packages will be installed: adduser bash-completion bsdmainutils debhelper ed fftw2 file fontconfig-config freeglut3 gawk gettext gettext-base ghostscript groff-base gsfonts html2text intltool-debian latex-make libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libblas3gf libcroco3 libcsiro0 libcups2 libcupsimage2 libdbus-1-3 libdrm2 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcrypt11 libgd2-xpm libgettextpo0 libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libgnutls26 libgpg-error0 libgraphite3 libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libhdf4-0-alt libibverbs1 libice6 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms1 liblcms2-2 libltdl7 libmagic1 libmath-tamuanova-perl libopengl-perl libopenjpeg2 libopenmpi1.3 libp11-kit0 libpaper-utils libpaper1 libpcre3 libpdl-stats-perl libpipeline1 libplplot11 libpng12-0 libpoppler19 libproj0 libptexenc1 libqhull5 libqsastime0 libsigsegv2 libsm6 libsqlite3-0 libssl1.0.0 libtamuanova-0.2 libtasn1-3 libterm-readkey-perl libtiff4 libtorque2 libunistring0 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxmu6 libxpm4 libxt6 libxxf86vm1 luatex man-db mime-support pdl po-debconf poppler-data preview-latex-style proj-data python python-minimal python2.7 python2.7-minimal sbuild-build-depends-altree-dummy tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures transfig ttf-dejavu-core ttf-marvosym x11-common 0 upgraded, 139 newly installed, 0 to remove and 7 not upgraded. Need to get 74.7 MB/114 MB of archives. After this operation, 312 MB of additional disk space will be used. Get:1 http://repo.raspbian.lan/raspbian/ testing/main libpoppler19 armhf 0.18.4-2+b1 [996 kB] Get:2 http://repo.raspbian.lan/raspbian/ testing/main bash-completion all 1:1.99-3 [189 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main ed armhf 1.6-2 [53.5 kB] Get:4 http://repo.raspbian.lan/raspbian/ testing/main freeglut3 armhf 2.6.0-1.1 [126 kB] Get:5 http://repo.raspbian.lan/raspbian/ testing/main transfig armhf 1:3.2.5.d-3 [626 kB] Get:6 http://repo.raspbian.lan/raspbian/ testing/main latex-make all 2.1.18-1 [905 kB] Get:7 http://repo.raspbian.lan/raspbian/ testing/main libblas3gf armhf 1.2.20110419-3 [7816 B] Get:8 http://repo.raspbian.lan/raspbian/ testing/main libqhull5 armhf 2009.1-3 [154 kB] Get:9 http://repo.raspbian.lan/raspbian/ testing/main libcsiro0 armhf 5.9.9-4+rpi1 [55.0 kB] Get:10 http://repo.raspbian.lan/raspbian/ testing/main libgraphite3 armhf 1:2.3.1-0.2 [166 kB] Get:11 http://repo.raspbian.lan/raspbian/ testing/main libgsl0ldbl armhf 1.15+dfsg-1 [904 kB] Get:12 http://repo.raspbian.lan/raspbian/ testing/main libkpathsea6 armhf 2012.20120530-2+b1 [159 kB] Get:13 http://repo.raspbian.lan/raspbian/ testing/main libtamuanova-0.2 armhf 0.2-2 [7498 B] Get:14 http://repo.raspbian.lan/raspbian/ testing/main libmath-tamuanova-perl armhf 1.0.1-1 [14.6 kB] Get:15 http://repo.raspbian.lan/raspbian/ testing/main libopengl-perl armhf 0.66+dfsg-1 [463 kB] Get:16 http://repo.raspbian.lan/raspbian/ testing/main libterm-readkey-perl armhf 2.30-4 [30.0 kB] Get:17 http://repo.raspbian.lan/raspbian/ testing/main libibverbs1 armhf 1.1.6-1 [30.9 kB] Get:18 http://repo.raspbian.lan/raspbian/ testing/main libtorque2 armhf 2.4.16+dfsg-1 [109 kB] Get:19 http://repo.raspbian.lan/raspbian/ testing/main libopenmpi1.3 armhf 1.4.5-1 [1206 kB] Get:20 http://repo.raspbian.lan/raspbian/ testing/main fftw2 armhf 2.1.5-1 [361 kB] Get:21 http://repo.raspbian.lan/raspbian/ testing/main libhdf4-0-alt armhf 4.2r4-13 [286 kB] Get:22 http://repo.raspbian.lan/raspbian/ testing/main libqsastime0 armhf 5.9.9-4+rpi1 [40.1 kB] Get:23 http://repo.raspbian.lan/raspbian/ testing/main libplplot11 armhf 5.9.9-4+rpi1 [486 kB] Get:24 http://repo.raspbian.lan/raspbian/ testing/main pdl armhf 1:2.4.11-4 [5279 kB] Get:25 http://repo.raspbian.lan/raspbian/ testing/main libpdl-stats-perl armhf 0.6.2-1+rpi1 [397 kB] Get:26 http://repo.raspbian.lan/raspbian/ testing/main libptexenc1 armhf 2012.20120530-2+b1 [53.0 kB] Get:27 http://repo.raspbian.lan/raspbian/ testing/main tex-common all 3.13 [640 kB] Get:28 http://repo.raspbian.lan/raspbian/ testing/main luatex armhf 0.70.1.20120524-2 [2268 kB] Get:29 http://repo.raspbian.lan/raspbian/ testing/main preview-latex-style all 11.86-10 [311 kB] Get:30 http://repo.raspbian.lan/raspbian/ testing/main texlive-common all 2012.20120611-1 [200 kB] Get:31 http://repo.raspbian.lan/raspbian/ testing/main texlive-doc-base all 2012.20120611-1 [1651 kB] Get:32 http://repo.raspbian.lan/raspbian/ testing/main texlive-binaries armhf 2012.20120530-2+b1 [16.8 MB] Get:33 http://repo.raspbian.lan/raspbian/ testing/main texlive-base all 2012.20120611-1 [14.2 MB] Get:34 http://repo.raspbian.lan/raspbian/ testing/main ttf-marvosym all 0.1+dfsg-2 [46.8 kB] Get:35 http://repo.raspbian.lan/raspbian/ testing/main texlive-fonts-recommended all 2012.20120611-1 [5485 kB] Get:36 http://repo.raspbian.lan/raspbian/ testing/main texlive-lang-french all 2012.20120611-1 [3650 kB] Get:37 http://repo.raspbian.lan/raspbian/ testing/main texlive-latex-base all 2012.20120611-1 [894 kB] Get:38 http://repo.raspbian.lan/raspbian/ testing/main texlive-latex-recommended all 2012.20120611-1 [6779 kB] Get:39 http://repo.raspbian.lan/raspbian/ testing/main texlive-pictures all 2012.20120611-1 [2276 kB] Get:40 http://repo.raspbian.lan/raspbian/ testing/main texlive-latex-extra all 2012.20120611-1 [6397 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.7 MB in 21s (3474 kB/s) Selecting previously unselected package libpcre3:armhf. (Reading database ... 10660 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libssl1.0.0:armhf. Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1c-3+rpi1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libgpg-error0:armhf. Unpacking libgpg-error0:armhf (from .../libgpg-error0_1.10-3_armhf.deb) ... Selecting previously unselected package libgcrypt11:armhf. Unpacking libgcrypt11:armhf (from .../libgcrypt11_1.5.0-3_armhf.deb) ... Selecting previously unselected package libp11-kit0:armhf. Unpacking libp11-kit0:armhf (from .../libp11-kit0_0.12-3_armhf.deb) ... 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Selecting previously unselected package libfontconfig1:armhf. Unpacking libfontconfig1:armhf (from .../libfontconfig1_2.9.0-6_armhf.deb) ... Selecting previously unselected package libxau6:armhf. Unpacking libxau6:armhf (from .../libxau6_1%3a1.0.7-1_armhf.deb) ... Selecting previously unselected package libxdmcp6:armhf. Unpacking libxdmcp6:armhf (from .../libxdmcp6_1%3a1.1.1-1_armhf.deb) ... Selecting previously unselected package libxcb1:armhf. Unpacking libxcb1:armhf (from .../libxcb1_1.8.1-1_armhf.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ... Selecting previously unselected package libx11-6:armhf. Unpacking libx11-6:armhf (from .../libx11-6_2%3a1.5.0-1_armhf.deb) ... Selecting previously unselected package libxpm4:armhf. Unpacking libxpm4:armhf (from .../libxpm4_1%3a3.5.10-1_armhf.deb) ... Selecting previously unselected package libgd2-xpm:armhf. Unpacking libgd2-xpm:armhf (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package libgettextpo0:armhf. Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libgfortran3:armhf. Unpacking libgfortran3:armhf (from .../libgfortran3_4.7.0-1.1+rpi_armhf.deb) ... Selecting previously unselected package libglapi-mesa:armhf. Unpacking libglapi-mesa:armhf (from .../libglapi-mesa_8.0.3-1_armhf.deb) ... Selecting previously unselected package libx11-xcb1:armhf. Unpacking libx11-xcb1:armhf (from .../libx11-xcb1_2%3a1.5.0-1_armhf.deb) ... Selecting previously unselected package libxcb-glx0:armhf. Unpacking libxcb-glx0:armhf (from .../libxcb-glx0_1.8.1-1_armhf.deb) ... Selecting previously unselected package libxdamage1:armhf. 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Selecting previously unselected package libjasper1:armhf. Unpacking libjasper1:armhf (from .../libjasper1_1.900.1-13_armhf.deb) ... Selecting previously unselected package liblcms1:armhf. Unpacking liblcms1:armhf (from .../liblcms1_1.19.dfsg-1.1_armhf.deb) ... Selecting previously unselected package liblcms2-2:armhf. Unpacking liblcms2-2:armhf (from .../liblcms2-2_2.2+git20110628-2.2_armhf.deb) ... Selecting previously unselected package libltdl7:armhf. Unpacking libltdl7:armhf (from .../libltdl7_2.4.2-1.1_armhf.deb) ... Selecting previously unselected package libpaper1:armhf. Unpacking libpaper1:armhf (from .../libpaper1_1.1.24+nmu2_armhf.deb) ... Selecting previously unselected package libopenjpeg2. Unpacking libopenjpeg2 (from .../libopenjpeg2_1.3+dfsg-4_armhf.deb) ... Selecting previously unselected package libpoppler19:armhf. Unpacking libpoppler19:armhf (from .../libpoppler19_0.18.4-2+b1_armhf.deb) ... Selecting previously unselected package libsm6:armhf. 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Selecting previously unselected package libkpathsea6. Unpacking libkpathsea6 (from .../libkpathsea6_2012.20120530-2+b1_armhf.deb) ... Selecting previously unselected package libtamuanova-0.2. Unpacking libtamuanova-0.2 (from .../libtamuanova-0.2_0.2-2_armhf.deb) ... Selecting previously unselected package libmath-tamuanova-perl. Unpacking libmath-tamuanova-perl (from .../libmath-tamuanova-perl_1.0.1-1_armhf.deb) ... Selecting previously unselected package libopengl-perl. Unpacking libopengl-perl (from .../libopengl-perl_0.66+dfsg-1_armhf.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_armhf.deb) ... Selecting previously unselected package libterm-readkey-perl. Unpacking libterm-readkey-perl (from .../libterm-readkey-perl_2.30-4_armhf.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_armhf.deb) ... 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Selecting previously unselected package texlive-latex-recommended. Unpacking texlive-latex-recommended (from .../texlive-latex-recommended_2012.20120611-1_all.deb) ... Selecting previously unselected package texlive-pictures. Unpacking texlive-pictures (from .../texlive-pictures_2012.20120611-1_all.deb) ... Selecting previously unselected package texlive-latex-extra. Unpacking texlive-latex-extra (from .../texlive-latex-extra_2012.20120611-1_all.deb) ... Selecting previously unselected package sbuild-build-depends-altree-dummy. Unpacking sbuild-build-depends-altree-dummy (from .../sbuild-build-depends-altree-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libssl1.0.0:armhf (1.0.1c-3+rpi1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libgpg-error0:armhf (1.10-3) ... Setting up libgcrypt11:armhf (1.5.0-3) ... Setting up libp11-kit0:armhf (0.12-3) ... Setting up libtasn1-3:armhf (2.13-2) ... Setting up libgnutls26:armhf (2.12.20-1) ... Setting up libkeyutils1:armhf (1.5.5-2) ... Setting up libkrb5support0:armhf (1.10.1+dfsg-1) ... Setting up libk5crypto3:armhf (1.10.1+dfsg-1) ... Setting up libkrb5-3:armhf (1.10.1+dfsg-1) ... Setting up libgssapi-krb5-2:armhf (1.10.1+dfsg-1) ... Setting up libidn11:armhf (1.25-2) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libsqlite3-0:armhf (3.7.13-1) ... Setting up libxml2:armhf (2.8.0+dfsg1-4) ... Setting up libavahi-common-data:armhf (0.6.31-1) ... Setting up libavahi-common3:armhf (0.6.31-1) ... Setting up libdbus-1-3:armhf (1.6.0-1) ... Setting up libavahi-client3:armhf (0.6.31-1) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libcups2:armhf (1.5.3-1) ... Setting up libjpeg8:armhf (8d-1) ... Setting up libpng12-0:armhf (1.2.49-1) ... Setting up libjbig0:armhf (2.0-2) ... Setting up libtiff4:armhf (3.9.6-5) ... Setting up libcupsimage2:armhf (1.5.3-1) ... Setting up libdrm2:armhf (2.4.33-1) ... Setting up libexpat1:armhf (2.1.0-1) ... Setting up libfreetype6:armhf (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-6) ... Setting up libfontconfig1:armhf (2.9.0-6) ... Setting up libxau6:armhf (1:1.0.7-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:armhf (2:1.5.0-1) ... Setting up libxpm4:armhf (1:3.5.10-1) ... Setting up libgd2-xpm:armhf (2.0.36~rc1~dfsg-6.1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up libgfortran3:armhf (4.7.0-1.1+rpi) ... Setting up libglapi-mesa:armhf (8.0.3-1) ... Setting up libx11-xcb1:armhf (2:1.5.0-1) ... Setting up libxcb-glx0:armhf (1.8.1-1) ... Setting up libxdamage1:armhf (1:1.1.3-2) ... Setting up libxext6:armhf (2:1.3.1-2) ... Setting up libxfixes3:armhf (1:5.0-4) ... Setting up libxxf86vm1:armhf (1:1.1.2-1) ... Setting up libgl1-mesa-glx:armhf (8.0.3-1) ... Setting up libglu1-mesa:armhf (8.0.3-1) ... Setting up x11-common (1:7.6+13) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.8-2) ... Setting up libjasper1:armhf (1.900.1-13) ... Setting up liblcms1:armhf (1.19.dfsg-1.1) ... Setting up liblcms2-2:armhf (2.2+git20110628-2.2) ... Setting up libltdl7:armhf (2.4.2-1.1) ... Setting up libpaper1:armhf (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libopenjpeg2 (1.3+dfsg-4) ... Setting up libpoppler19:armhf (0.18.4-2+b1) ... Setting up libsm6:armhf (2:1.2.1-2) ... Setting up libxt6:armhf (1:1.1.3-1) ... Setting up libxmu6:armhf (2:1.1.1-1) ... Setting up libxaw7:armhf (2:1.0.10-2) ... Setting up libxi6:armhf (2:1.6.1-1) ... Setting up adduser (3.113+nmu3) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up bash-completion (1:1.99-3) ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7-minimal (2.7.3~rc2-2.1) ... Setting up python2.7 (2.7.3~rc2-2.1) ... Setting up python-minimal (2.7.3~rc2-1) ... Setting up python (2.7.3~rc2-1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up ed (1.6-2) ... Setting up freeglut3 (2.6.0-1.1) ... Setting up libsigsegv2 (2.9-4) ... Setting up gawk (1:4.0.1+dfsg-2) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up poppler-data (0.4.5-7) ... Setting up libgs9-common (9.05~dfsg-6) ... Setting up libgs9 (9.05~dfsg-6) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up ghostscript (9.05~dfsg-6) ... Setting up transfig (1:3.2.5.d-3) ... Setting up latex-make (2.1.18-1) ... Setting up libblas3 (1.2.20110419-3) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode. Setting up libblas3gf (1.2.20110419-3) ... Setting up libqhull5 (2009.1-3) ... Setting up libcsiro0 (5.9.9-4+rpi1) ... Setting up libgraphite3 (1:2.3.1-0.2) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libkpathsea6 (2012.20120530-2+b1) ... Setting up libtamuanova-0.2 (0.2-2) ... Setting up libmath-tamuanova-perl (1.0.1-1) ... Setting up libopengl-perl (0.66+dfsg-1) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libterm-readkey-perl (2.30-4) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up fftw2 (2.1.5-1) ... Setting up libhdf4-0-alt (4.2r4-13) ... Setting up libqsastime0 (5.9.9-4+rpi1) ... Setting up libplplot11 (5.9.9-4+rpi1) ... Setting up proj-data (4.7.0-2) ... Setting up libproj0 (4.7.0-2) ... Setting up pdl (1:2.4.11-4) ... Setting up libpdl-stats-perl (0.6.2-1+rpi1) ... Setting up libptexenc1 (2012.20120530-2+b1) ... Setting up tex-common (3.13) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up luatex (0.70.1.20120524-2) ... texlive-base is not ready, cannot create formats Setting up preview-latex-style (11.86-10) ... Setting up texlive-common (2012.20120611-1) ... Setting up texlive-doc-base (2012.20120611-1) ... Setting up texlive-binaries (2012.20120530-2+b1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Setting up ttf-marvosym (0.1+dfsg-2) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2012.20120611-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-base (2012.20120611-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Setting up texlive-pictures (2012.20120611-1) ... Setting up texlive-fonts-recommended (2012.20120611-1) ... Setting up texlive-lang-french (2012.20120611-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building latex-based formats --byhyphen /var/lib/texmf/tex/generic/config/language.dat. This may take some time... done. Building e-tex based formats --byhyphen /var/lib/texmf/tex/generic/config/language.def. This may take some time... done. Setting up texlive-latex-recommended (2012.20120611-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-latex-extra (2012.20120611-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-altree-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-33 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.18-1 Package versions: adduser_3.113+nmu3 apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 bash-completion_1:1.99-3 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 ed_1.6-2 fakeroot_1.18.4-2 fftw2_2.1.5-1 file_5.11-1 findutils_4.4.2-4 fontconfig-config_2.9.0-6 freeglut3_2.6.0-1.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gawk_1:4.0.1+dfsg-2 gcc_4:4.6.3-6 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 ghostscript_9.05~dfsg-6 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gsfonts_1:8.11+urwcyr1.0.7~pre44-4.2 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 latex-make_2.1.18-1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.3+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libavahi-client3_0.6.31-1 libavahi-common-data_0.6.31-1 libavahi-common3_0.6.31-1 libblas3_1.2.20110419-3 libblas3gf_1.2.20110419-3 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libcsiro0_5.9.9-4+rpi1 libcups2_1.5.3-1 libcupsimage2_1.5.3-1 libdb5.1_5.1.29-1 libdbus-1-3_1.6.0-1 libdpkg-perl_1.16.3 libdrm2_2.4.33-1 libexpat1_2.1.0-1 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgcrypt11_1.5.0-3 libgd2-xpm_2.0.36~rc1~dfsg-6.1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.0-1.1+rpi libgl1-mesa-glx_8.0.3-1 libglapi-mesa_8.0.3-1 libglib2.0-0_2.32.3-1 libglu1-mesa_8.0.3-1 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-1 libgomp1_4.7.0-1.1+rpi libgpg-error0_1.10-3 libgraphite3_1:2.3.1-0.2 libgs9_9.05~dfsg-6 libgs9-common_9.05~dfsg-6 libgsl0ldbl_1.15+dfsg-1 libgssapi-krb5-2_1.10.1+dfsg-1 libhdf4-0-alt_4.2r4-13 libibverbs1_1.1.6-1 libice6_2:1.0.8-2 libidn11_1.25-2 libijs-0.35_0.35-8 libjasper1_1.900.1-13 libjbig0_2.0-2 libjbig2dec0_0.11+20120125-1 libjpeg8_8d-1 libk5crypto3_1.10.1+dfsg-1 libkeyutils1_1.5.5-2 libkpathsea6_2012.20120530-2+b1 libkrb5-3_1.10.1+dfsg-1 libkrb5support0_1.10.1+dfsg-1 liblcms1_1.19.dfsg-1.1 liblcms2-2_2.2+git20110628-2.2 liblocale-gettext-perl_1.05-7 libltdl7_2.4.2-1.1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmath-tamuanova-perl_1.0.1-1 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libncursesw5_5.9-9 libopengl-perl_0.66+dfsg-1 libopenjpeg2_1.3+dfsg-4 libopenmpi1.3_1.4.5-1 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpdl-stats-perl_0.6.2-1+rpi1 libpipeline1_1.2.1-1 libplplot11_5.9.9-4+rpi1 libpng12-0_1.2.49-1 libpoppler19_0.18.4-2+b1 libproj0_4.7.0-2 libptexenc1_2012.20120530-2+b1 libqhull5_2009.1-3 libqsastime0_5.9.9-4+rpi1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libsigsegv2_2.9-4 libslang2_2.2.4-10 libsm6_2:1.2.1-2 libsqlite3-0_3.7.13-1 libss2_1.42.4-3 libssl1.0.0_1.0.1c-3+rpi1 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtamuanova-0.2_0.2-2 libtasn1-3_2.13-2 libterm-readkey-perl_2.30-4 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtiff4_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libtorque2_2.4.16+dfsg-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libx11-xcb1_2:1.5.0-1 libxau6_1:1.0.7-1 libxaw7_2:1.0.10-2 libxcb-glx0_1.8.1-1 libxcb1_1.8.1-1 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxi6_2:1.6.1-1 libxml2_2.8.0+dfsg1-4 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxt6_1:1.1.3-1 libxxf86vm1_1:1.1.2-1 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian6 luatex_0.70.1.20120524-2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 pdl_1:2.4.11-4 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 poppler-data_0.4.5-7 preview-latex-style_11.86-10 proj-data_4.7.0-2 python_2.7.3~rc2-1 python-minimal_2.7.3~rc2-1 python2.7_2.7.3~rc2-2.1 python2.7-minimal_2.7.3~rc2-2.1 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-altree-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tex-common_3.13 texlive-base_2012.20120611-1 texlive-binaries_2012.20120530-2+b1 texlive-common_2012.20120611-1 texlive-doc-base_2012.20120611-1 texlive-fonts-recommended_2012.20120611-1 texlive-lang-french_2012.20120611-1 texlive-latex-base_2012.20120611-1 texlive-latex-extra_2012.20120611-1 texlive-latex-recommended_2012.20120611-1 texlive-pictures_2012.20120611-1 transfig_1:3.2.5.d-3 ttf-dejavu-core_2.33-2 ttf-marvosym_0.1+dfsg-2 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.1 x11-common_1:7.6+13 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sat Jun 9 20:46:21 2012 UTC using RSA key ID FA0E9B9D gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./altree_1.2.1-1.dsc dpkg-source: info: extracting altree in altree-1.2.1 dpkg-source: info: unpacking altree_1.2.1.orig.tar.gz dpkg-source: info: unpacking altree_1.2.1-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_ALIAS_NAME=chroot:testing-armhf-sbuild SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-6912a266-672a-4767-aabd-6a7284ca919b SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package altree dpkg-buildpackage: source version 1.2.1-1 dpkg-source --before-build altree-1.2.1 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make -C Documentation distclean make[2]: Entering directory `/«PKGBUILDDIR»/Documentation' make[2]: Nothing to be done for `distclean'. make[2]: Leaving directory `/«PKGBUILDDIR»/Documentation' dh_auto_clean make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a Checking if your kit is complete... Looks good MakeMaker (v6.57_05) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Writing Makefile for ALTree::CUtils Writing MYMETA.yml Writing Makefile for ALTree::CUtils Writing MYMETA.yml Writing Makefile for altree Writing MYMETA.yml debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make -C Documentation pdf make[2]: Entering directory `/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory `/«PKGBUILDDIR»/Documentation' make[3]: Nothing to be done for `LU_WATCH_FILES_SAVE'. make[3]: Leaving directory `/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated Package texdepends Warning: graphicspath already redefined. Skipping it. on inp Package texdepends Warning: Diverting empty macro 'Ginclude@eps' Package texdepends Warning: Gin@getbase already redefined. Skipping it. on inpu Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on inp Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on inp Package texdepends Warning: Gread@eps already redefined. Skipping it. on input Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 1 Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 1 Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 1 Package texdepends Warning: No 'fig/altree-q.pdftex' file Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 1 Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 1 Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input l Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 2 Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input l Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 2 Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line Chapter 3. Chapter 4. LaTeX Warning: Reference `help' on page 13 undefined on input line 564. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input Chapter 5. LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig/option_b_1.pdftex' file Package texdepends Warning: Figure 'fig/option_b_1.fig' needed LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig/option_b_2.pdftex' file Package texdepends Warning: Figure 'fig/option_b_2.fig' needed Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line Chapter 6. Package texdepends Warning: No 'fig/create_file_paup.pdftex' file Package texdepends Warning: Figure 'fig/create_file_paup.pdftex_t' needed Package texdepends Warning: No 'fig/create_file_phy.pdftex' file Package texdepends Warning: Figure 'fig/create_file_phy.pdftex_t' needed Package texdepends Warning: No 'fig/association_paup.pdftex' file Package texdepends Warning: Figure 'fig/association_paup.pdftex_t' needed Package texdepends Warning: No 'fig/localisation_paup.pdftex' file Package texdepends Warning: Figure 'fig/localisation_paup.pdftex_t' needed Package texdepends Warning: No 'fig/association_phylip.pdftex' file Package texdepends Warning: Figure 'fig/association_phylip.pdftex_t' needed Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line Package texdepends Warning: No 'fig/association_paml.pdftex' file Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed Package texdepends Warning: No 'fig/localisation_paml.pdftex' file Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. Package rerunfilecheck Warning: File `manual.out' has changed. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory `/«PKGBUILDDIR»/Documentation' LaTeX.mk:784: fig/option_b.subfig.mk: No such file or directory ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[3]: Entering directory `/«PKGBUILDDIR»/Documentation' make[3]: Leaving directory `/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory `/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=2 manual.pdf make[4]: Entering directory `/«PKGBUILDDIR»/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2012/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/overview.pdftex <====== ======> building fig/overview.pdftex_t <====== ======> building fig/altree-q.pdftex <====== ======> building fig/altree-q.pdftex_t <====== ======> building fig/option_b_1.fig <====== ======> building fig/option_b_2.fig <====== ======> building fig/create_file_paup.pdftex <====== ======> building fig/create_file_paup.pdftex_t <====== ======> building fig/create_file_phy.pdftex <====== ======> building fig/create_file_phy.pdftex_t <====== ======> building fig/association_paup.pdftex <====== ======> building fig/association_paup.pdftex_t <====== ======> building fig/localisation_paup.pdftex <====== ======> building fig/localisation_paup.pdftex_t <====== ======> building fig/association_phylip.pdftex <====== ======> building fig/association_phylip.pdftex_t <====== ======> building fig/association_paml.pdftex <====== ======> building fig/association_paml.pdftex_t <====== ======> building fig/localisation_paml.pdftex <====== ======> building fig/localisation_paml.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory `/«PKGBUILDDIR»/Documentation' make[5]: Leaving directory `/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== removed `manual.pdf_NEED_REBUILD' removed `manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated Package texdepends Warning: graphicspath already redefined. Skipping it. on inp Package texdepends Warning: Diverting empty macro 'Ginclude@eps' Package texdepends Warning: Gin@getbase already redefined. Skipping it. on inpu Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on inp Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on inp Package texdepends Warning: Gread@eps already redefined. Skipping it. on input Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 1 Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 1 LaTeX Warning: `h' float specifier changed to `ht'. 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Rerun to get cross-references right. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory `/«PKGBUILDDIR»/Documentation' make[5]: Leaving directory `/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory `/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory `/«PKGBUILDDIR»/Documentation' make[7]: Leaving directory `/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== removed `manual.pdf_NEED_REBUILD' removed `manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated Package texdepends Warning: graphicspath already redefined. Skipping it. on inp Package texdepends Warning: Diverting empty macro 'Ginclude@eps' Package texdepends Warning: Gin@getbase already redefined. Skipping it. on inpu Package texdepends Warning: Ginclude@eps already redefined. 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Rerun to get cross-references right. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory `/«PKGBUILDDIR»/Documentation' make[7]: Leaving directory `/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory `/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory `/«PKGBUILDDIR»/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2012/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory `/«PKGBUILDDIR»/Documentation' make[9]: Leaving directory `/«PKGBUILDDIR»/Documentation' ======> building manual.pdf <====== removed `manual.pdf_NEED_REBUILD' removed `manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated Package texdepends Warning: graphicspath already redefined. Skipping it. on inp Package texdepends Warning: Diverting empty macro 'Ginclude@eps' Package texdepends Warning: Gin@getbase already redefined. Skipping it. on inpu Package texdepends Warning: Ginclude@eps already redefined. 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Chapter 7. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory `/«PKGBUILDDIR»/Documentation' make[9]: Leaving directory `/«PKGBUILDDIR»/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory `/«PKGBUILDDIR»/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory `/«PKGBUILDDIR»/Documentation' make[10]: `manual.pdf' is up to date. make[10]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[9]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[8]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[7]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[6]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[5]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[4]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[3]: Leaving directory `/«PKGBUILDDIR»/Documentation' make[2]: Leaving directory `/«PKGBUILDDIR»/Documentation' dh_auto_build make[2]: Entering directory `/«PKGBUILDDIR»' cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm make[3]: Entering directory `/«PKGBUILDDIR»/CUtils' cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) make -C c_sources make[4]: Entering directory `/«PKGBUILDDIR»/CUtils/c_sources' cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.14/CORE" chisq.c cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.14/CORE" double_permutation.c cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.14/CORE" fisher.c cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.14/CORE" z.c ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o z.o : libaltree-cutils.a make[4]: Leaving directory `/«PKGBUILDDIR»/CUtils/c_sources' make[4]: Entering directory `/«PKGBUILDDIR»/CUtils/c_sources' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/CUtils/c_sources' /usr/bin/perl /usr/share/perl/5.14.2/ExtUtils/xsubpp -typemap /usr/share/perl/5.14/ExtUtils/typemap CUtils.xs > CUtils.xsc && mv CUtils.xsc CUtils.c Please specify prototyping behavior for CUtils.xs (see perlxs manual) cc -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/perl/5.14/CORE" CUtils.c In file included from CUtils.xs:5:0: ppport.h:237:0: warning: "PERL_UNUSED_DECL" redefined [enabled by default] /usr/lib/perl/5.14/CORE/perl.h:328:0: note: this is the location of the previous definition Running Mkbootstrap for ALTree::CUtils () chmod 644 CUtils.bs rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm \ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so cp CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs chmod 644 ../blib/arch/auto/ALTree/CUtils/CUtils.bs Manifying ../blib/man3/ALTree::CUtils.3pm make[3]: Leaving directory `/«PKGBUILDDIR»/CUtils' cp progs/altree-add-S blib/script/altree-add-S /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S cp progs/altree-convert blib/script/altree-convert /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert cp progs/altree blib/script/altree /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree Manifying blib/man1/altree-add-S.1p Manifying blib/man1/altree-convert.1p Manifying blib/man1/altree.1p make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_test -a make[1]: Entering directory `/«PKGBUILDDIR»' make[2]: Entering directory `/«PKGBUILDDIR»/CUtils' make[3]: Entering directory `/«PKGBUILDDIR»/CUtils/c_sources' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/CUtils/c_sources' make[2]: Leaving directory `/«PKGBUILDDIR»/CUtils' PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. ok All tests successful. Files=1, Tests=1, 1 wallclock secs ( 0.17 usr 0.04 sys + 0.74 cusr 0.05 csys = 1.00 CPU) Result: PASS make[2]: Entering directory `/«PKGBUILDDIR»/CUtils' make[3]: Entering directory `/«PKGBUILDDIR»/CUtils/c_sources' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/CUtils/c_sources' PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... ok t/double_permutation.t .. ok All tests successful. Files=2, Tests=4, 1 wallclock secs ( 0.19 usr 0.03 sys + 0.49 cusr 0.03 csys = 0.74 CPU) Result: PASS make[3]: Entering directory `/«PKGBUILDDIR»/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory `/«PKGBUILDDIR»/CUtils/c_sources' make[2]: Leaving directory `/«PKGBUILDDIR»/CUtils' make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make PREFIX=debian/altree/usr install make[2]: Entering directory `/«PKGBUILDDIR»' make[3]: Entering directory `/«PKGBUILDDIR»/CUtils' make[4]: Entering directory `/«PKGBUILDDIR»/CUtils/c_sources' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/CUtils/c_sources' make[3]: Leaving directory `/«PKGBUILDDIR»/CUtils' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing debian/altree/usr/lib/perl5/auto/ALTree/CUtils/CUtils.bs Installing debian/altree/usr/lib/perl5/auto/ALTree/CUtils/CUtils.so Installing debian/altree/usr/lib/perl5/auto/ALTree/CUtils/autosplit.ix Installing debian/altree/usr/lib/perl5/ALTree/Node.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteSensPerForet.pm Installing debian/altree/usr/lib/perl5/ALTree/CUtils.pm Installing debian/altree/usr/lib/perl5/ALTree/Chi2.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteCollection.pm Installing debian/altree/usr/lib/perl5/ALTree/Sens.pm Installing debian/altree/usr/lib/perl5/ALTree/Tree.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteSens.pm Installing debian/altree/usr/lib/perl5/ALTree/SitePerTree.pm Installing debian/altree/usr/lib/perl5/ALTree/Nanova.pm Installing debian/altree/usr/lib/perl5/ALTree/Base.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteSensPerTree.pm Installing debian/altree/usr/lib/perl5/ALTree/SitePerForet.pm Installing debian/altree/usr/lib/perl5/ALTree/Utils.pm Installing debian/altree/usr/lib/perl5/ALTree/Import.pm Installing debian/altree/usr/lib/perl5/ALTree/Site.pm Installing debian/altree/usr/lib/perl5/ALTree/Input.pm Installing debian/altree/usr/lib/perl5/ALTree/Foret.pm Installing debian/altree/usr/lib/perl5/ALTree/to_rewrite.pm Installing debian/altree/usr/share/man/man1/altree-add-S.1p Installing debian/altree/usr/share/man/man1/altree-convert.1p Installing debian/altree/usr/share/man/man1/altree.1p Installing debian/altree/usr/share/man/man3/ALTree::CUtils.3pm Installing debian/altree/usr/bin/altree-convert Installing debian/altree/usr/bin/altree-add-S Installing debian/altree/usr/bin/altree make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/«PKGBUILDDIR»' dh_compress --exclude=.pdf make[1]: Leaving directory `/«PKGBUILDDIR»' dh_fixperms -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a debian/rules override_dh_builddeb make[1]: Entering directory `/«PKGBUILDDIR»' dh_builddeb -- -Z xz dpkg-deb: building package `altree' in `../altree_1.2.1-1_armhf.deb'. make[1]: Leaving directory `/«PKGBUILDDIR»' dpkg-genchanges -B -mbuildd >../altree_1.2.1-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build altree-1.2.1 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120627-1159 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ altree_1.2.1-1_armhf.changes: ───────────────────────────── Format: 1.8 Date: Sat, 09 Jun 2012 22:45:06 +0200 Source: altree Binary: altree altree-examples Architecture: armhf Version: 1.2.1-1 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Vincent Danjean Description: altree - program to perform phylogeny-based association and localization a altree-examples - example files for ALTree Changes: altree (1.2.1-1) unstable; urgency=low . [ Andreas Tille ] * debian/upstream: Add eprint * debian/reference: Removed in favour of debian/upstream . [ Vincent Danjean ] * New (stable) upstream release 1.2.1 * debian/{README.Debian,watch}: No need to skip old last version 1.1.1 * debian/patches/*: latex bug fixed upstream Checksums-Sha1: 449e2395019d17ae965709b321e6470ea62a7ebb 326870 altree_1.2.1-1_armhf.deb Checksums-Sha256: 1cf79f224125ede1a9caed4d31da3fbb0a1978578d9c1d0dc96e1535925b693b 326870 altree_1.2.1-1_armhf.deb Files: e1a97b6a88e6546d83ccefc07a090869 326870 science optional altree_1.2.1-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ altree_1.2.1-1_armhf.deb ──────────────────────── new debian package, version 2.0. size 326870 bytes: control archive=1693 bytes. 882 bytes, 18 lines control 2342 bytes, 35 lines md5sums Package: altree Version: 1.2.1-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 537 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), perl (>= 5.14.2-11), perlapi-5.14.2, libmath-tamuanova-perl, libpdl-stats-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Section: science Priority: optional Homepage: http://claire.bardel.free.fr/software.html Description: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. drwxr-xr-x root/root 0 2012-06-27 11:59 ./ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/lib/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/lib/perl5/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/lib/perl5/auto/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/lib/perl5/auto/ALTree/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/lib/perl5/auto/ALTree/CUtils/ -rw-r--r-- root/root 95 2012-06-27 11:58 ./usr/lib/perl5/auto/ALTree/CUtils/autosplit.ix -rw-r--r-- root/root 0 2012-06-27 11:58 ./usr/lib/perl5/auto/ALTree/CUtils/CUtils.bs -rw-r--r-- root/root 22052 2012-06-27 11:59 ./usr/lib/perl5/auto/ALTree/CUtils/CUtils.so drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/lib/perl5/ALTree/ -rw-r--r-- root/root 5965 2009-04-19 00:26 ./usr/lib/perl5/ALTree/Node.pm -rw-r--r-- root/root 905 2006-01-10 09:26 ./usr/lib/perl5/ALTree/SiteSensPerForet.pm -rw-r--r-- root/root 3081 2012-06-04 02:29 ./usr/lib/perl5/ALTree/CUtils.pm -rw-r--r-- root/root 5672 2006-04-01 05:36 ./usr/lib/perl5/ALTree/Chi2.pm -rw-r--r-- root/root 1044 2006-01-10 09:26 ./usr/lib/perl5/ALTree/SiteCollection.pm -rw-r--r-- root/root 1455 2006-01-10 09:26 ./usr/lib/perl5/ALTree/Sens.pm -rw-r--r-- root/root 4804 2006-06-28 01:30 ./usr/lib/perl5/ALTree/Tree.pm -rw-r--r-- root/root 1287 2006-01-10 09:26 ./usr/lib/perl5/ALTree/SiteSens.pm -rw-r--r-- root/root 876 2006-01-10 09:26 ./usr/lib/perl5/ALTree/SitePerTree.pm -rw-r--r-- root/root 2371 2009-04-19 00:26 ./usr/lib/perl5/ALTree/Nanova.pm -rw-r--r-- root/root 342 2006-01-10 09:26 ./usr/lib/perl5/ALTree/Base.pm -rw-r--r-- root/root 2781 2006-01-10 09:26 ./usr/lib/perl5/ALTree/SiteSensPerTree.pm -rw-r--r-- root/root 3592 2006-01-10 09:26 ./usr/lib/perl5/ALTree/SitePerForet.pm -rw-r--r-- root/root 1473 2012-06-04 02:29 ./usr/lib/perl5/ALTree/Utils.pm -rw-r--r-- root/root 2026 2006-01-10 09:26 ./usr/lib/perl5/ALTree/Import.pm -rw-r--r-- root/root 1895 2006-01-10 09:26 ./usr/lib/perl5/ALTree/Site.pm -rw-r--r-- root/root 24527 2006-04-01 08:40 ./usr/lib/perl5/ALTree/Input.pm -rw-r--r-- root/root 2817 2006-01-10 09:26 ./usr/lib/perl5/ALTree/Foret.pm -rw-r--r-- root/root 12662 2012-06-04 06:03 ./usr/lib/perl5/ALTree/to_rewrite.pm drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/share/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/share/doc/altree/ -rw-r--r-- root/root 1855 2012-06-09 13:45 ./usr/share/doc/altree/changelog.Debian.gz -rw-r--r-- root/root 1441 2006-01-10 09:26 ./usr/share/doc/altree/README -rw-r--r-- root/root 192 2006-01-10 09:26 ./usr/share/doc/altree/changelog.gz -rw-r--r-- root/root 1363 2012-04-21 23:52 ./usr/share/doc/altree/copyright -rw-r--r-- root/root 267064 2012-06-27 11:58 ./usr/share/doc/altree/manual.pdf drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/share/man/ drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/share/man/man1/ -rw-r--r-- root/root 2669 2012-06-27 11:59 ./usr/share/man/man1/altree-convert.1p.gz -rw-r--r-- root/root 2606 2012-06-27 11:59 ./usr/share/man/man1/altree-add-S.1p.gz -rw-r--r-- root/root 3687 2012-06-27 11:59 ./usr/share/man/man1/altree.1p.gz drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/share/man/man3/ -rw-r--r-- root/root 2448 2012-06-27 11:59 ./usr/share/man/man3/ALTree::CUtils.3pm.gz drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/share/doc-base/ -rw-r--r-- root/root 517 2008-06-21 01:06 ./usr/share/doc-base/altree drwxr-xr-x root/root 0 2012-06-27 11:59 ./usr/bin/ -rwxr-xr-x root/root 22886 2012-06-27 11:58 ./usr/bin/altree-convert -rwxr-xr-x root/root 15450 2012-06-27 11:58 ./usr/bin/altree-add-S -rwxr-xr-x root/root 55436 2012-06-27 11:58 ./usr/bin/altree ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser* bash-completion* bsdmainutils* debhelper* ed* fftw2* file* fontconfig-config* freeglut3* gawk* gettext* gettext-base* ghostscript* groff-base* gsfonts* html2text* intltool-debian* latex-make* libasprintf0c2* libavahi-client3* libavahi-common-data* libavahi-common3* libblas3* libblas3gf* libcroco3* libcsiro0* libcups2* libcupsimage2* libdbus-1-3* libdrm2* libexpat1* libffi5* libfontconfig1* libfreetype6* libgcrypt11* libgd2-xpm* libgettextpo0* libgfortran3* libgl1-mesa-glx* libglapi-mesa* libglib2.0-0* libglu1-mesa* libgnutls26* libgpg-error0* libgraphite3* libgs9* libgs9-common* libgsl0ldbl* libgssapi-krb5-2* libhdf4-0-alt* libibverbs1* libice6* libidn11* libijs-0.35* libjasper1* libjbig0* libjbig2dec0* libjpeg8* libk5crypto3* libkeyutils1* libkpathsea6* libkrb5-3* libkrb5support0* liblcms1* liblcms2-2* libltdl7* libmagic1* libmath-tamuanova-perl* libopengl-perl* libopenjpeg2* libopenmpi1.3* libp11-kit0* libpaper-utils* libpaper1* libpcre3* libpdl-stats-perl* libpipeline1* libplplot11* libpng12-0* libpoppler19* libproj0* libptexenc1* libqhull5* libqsastime0* libsigsegv2* libsm6* libsqlite3-0* libssl1.0.0* libtamuanova-0.2* libtasn1-3* libterm-readkey-perl* libtiff4* libtorque2* libunistring0* libx11-6* libx11-data* libx11-xcb1* libxau6* libxaw7* libxcb-glx0* libxcb1* libxdamage1* libxdmcp6* libxext6* libxfixes3* libxi6* libxml2* libxmu6* libxpm4* libxt6* libxxf86vm1* luatex* man-db* mime-support* pdl* po-debconf* poppler-data* preview-latex-style* proj-data* python* python-minimal* python2.7* python2.7-minimal* sbuild-build-depends-altree-dummy* sbuild-build-depends-core-dummy* tex-common* texlive-base* texlive-binaries* texlive-common* texlive-doc-base* texlive-fonts-recommended* texlive-lang-french* texlive-latex-base* texlive-latex-extra* texlive-latex-recommended* texlive-pictures* transfig* ttf-dejavu-core* ttf-marvosym* x11-common* 0 upgraded, 0 newly installed, 140 to remove and 7 not upgraded. After this operation, 312 MB disk space will be freed. (Reading database ... 29862 files and directories currently installed.) Removing sbuild-build-depends-altree-dummy ... Removing libpdl-stats-perl ... Removing pdl ... Purging configuration files for pdl ... Removing fftw2 ... Purging configuration files for fftw2 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing adduser ... Purging configuration files for adduser ... Removing bash-completion ... Purging configuration files for bash-completion ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing texlive-latex-extra ... Purging configuration files for texlive-latex-extra ... Removing texlive-pictures ... Purging configuration files for texlive-pictures ... Removing texlive-latex-recommended ... 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Purging configuration files for x11-common ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 13128 Build-Time: 133 Distribution: testing Host Architecture: armhf Install-Time: 529 Job: altree_1.2.1-1 Machine Architecture: armhf Package: altree Package-Time: 723 Source-Version: 1.2.1-1 Space: 13128 Status: successful Version: 1.2.1-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120627-1159 Build needed 00:12:03, 13128k disc space