sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build01.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ hmmer 3.0-4 (armhf) 11 May 2012 15:16 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: hmmer Version: 3.0-4 Source Version: 3.0-4 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/hmmer-1SaVgR/hmmer-3.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/hmmer-1SaVgR' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-d1140452-16e1-49f7-b2af-40c03acda114' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main TranslationIndex Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'hmmer' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/hmmer/trunk/ Need to get 3961 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main hmmer 3.0-4 (dsc) [1484 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main hmmer 3.0-4 (tar) [3952 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main hmmer 3.0-4 (diff) [7004 B] Fetched 3961 kB in 0s (9735 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-coFAa6/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10677 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev dpkg-deb: building package `sbuild-build-depends-hmmer-dummy' in `/«BUILDDIR»/resolver-IpUuHl/apt_archive/sbuild-build-depends-hmmer-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install hmmer build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libffi5 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-hmmer-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 21 newly installed, 0 to remove and 9 not upgraded. Need to get 0 B/9501 kB of archives. After this operation, 24.7 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10677 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-4_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.0-4_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.111_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5+rpi1_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ... Selecting previously unselected package sbuild-build-depends-hmmer-dummy. Unpacking sbuild-build-depends-hmmer-dummy (from .../sbuild-build-depends-hmmer-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-4) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.7.8.dfsg-9) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.0-4) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up bsdmainutils (9.0.1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-5+rpi1) ... Setting up autotools-dev (20120210.1) ... Setting up cdbs (0.4.111) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5+rpi1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120419) ... Setting up sbuild-build-depends-hmmer-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1.1+rpi2 gcc-4.6_4.6.3-1.1+rpi2 libc6-dev_2.13-32 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 linux-libc-dev_3.2.12-1 Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.111 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1.1+rpi2 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120419 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1.1+rpi2 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-1.1+rpi2 gcc-4.6-base_4.6.3-1.1+rpi2 gcc-4.7-base_4.7.0-1.1+rpi gettext_0.18.1.1-5+rpi1 gettext-base_0.18.1.1-5+rpi1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1.1+rpi libgdbm3_1.8.3-10 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1.1+rpi liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libss2_1.42.2-2 libstdc++6_4.7.0-1.1+rpi libstdc++6-4.6-dev_4.6.3-1.1+rpi2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hmmer-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.6.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Tue Apr 3 09:55:45 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./hmmer_3.0-4.dsc dpkg-source: info: extracting hmmer in hmmer-3.0 dpkg-source: info: unpacking hmmer_3.0.orig.tar.gz dpkg-source: info: unpacking hmmer_3.0-4.debian.tar.gz dpkg-source: info: applying debian-changes-3.0-1 dpkg-source: info: applying debian-changes-3.0-2.1 Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-d1140452-16e1-49f7-b2af-40c03acda114 SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package hmmer dpkg-buildpackage: source version 3.0-4 dpkg-source --before-build hmmer-3.0 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/«PKGBUILDDIR»' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-makefile-check rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) for i in ./easel/config.guess ./config.guess ./easel/config.sub ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done rm -f debian/stamp-autotools-files dh_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* debian/rules build-arch test -x debian/rules mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./easel/config.guess ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./easel/config.sub ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /«PKGBUILDDIR»/./configure mkdir -p . cd . && CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" /«PKGBUILDDIR»/./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/hmmer" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --enable-threads --mandir=/«PKGBUILDDIR»/debian/tmp/usr/share/man configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules configure: Configuring HMMER for your system. checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf configure: Full HMMER source distribution - using full configuration checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for C compiler vendor... gnu checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc configure: WARNING: It appears your platform will not fully support H3. configure: WARNING: We'll use the 'dummy' implementation, a slow reference implementation. checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking how to run the C preprocessor... gcc -E checking for C compiler vendor... (cached) gnu checking for gcc option to accept ISO C99... -std=gnu99 checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether your make is GNU make... yes, it is. configure: Activating "dummy" implementation checking compiler support --start-group... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for sys/types.h... (cached) yes checking sys/sysctl.h usability... yes checking sys/sysctl.h presence... yes checking for sys/sysctl.h... yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking whether byte ordering is bigendian... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for mkstemp... yes checking for popen... yes checking for strcasecmp... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_dummy/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/Makefile config.status: creating Makefile config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_dummy to src/impl configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules HMMER configuration: compiler: gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread linker: -Wl,-z,relro libraries: DP implementation: dummy configure: WARNING: The "dummy" implementation is a portable ANSI C reference implementation. configure: WARNING: It is slow, and is not intended for production use. touch debian/stamp-autotools /usr/bin/make -C . make[1]: Entering directory `/«PKGBUILDDIR»' cd easel; /usr/bin/make libeasel.a make[2]: Entering directory `/«PKGBUILDDIR»/easel' gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o easel.o -c easel.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_alphabet.o -c esl_alphabet.c esl_alphabet.c: In function 'esl_alphabet_Create': esl_alphabet.c:52:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_alphabet.c: In function 'esl_alphabet_CreateCustom': esl_alphabet.c:106:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_alphabet.c:170:23: warning: 'a' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_cluster.o -c esl_cluster.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_dirichlet.o -c esl_dirichlet.c esl_dirichlet.c: In function 'esl_mixdchlet_Create': esl_dirichlet.c:56:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_dirichlet.c: In function 'esl_mixdchlet_Fit_Multipass': esl_dirichlet.c:902:4: warning: 'status' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_distance.o -c esl_distance.c esl_distance.c: In function 'esl_dst_CPairIdMx': esl_distance.c:356:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl_distance.c: In function 'esl_dst_CJukesCantorMx': esl_distance.c:469:16: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl_distance.c: In function 'esl_dst_XPairIdMx': esl_distance.c:541:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl_distance.c: In function 'esl_dst_XJukesCantorMx': esl_distance.c:655:16: warning: 'status' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_dmatrix.o -c esl_dmatrix.c esl_dmatrix.c: In function 'esl_dmatrix_Create': esl_dmatrix.c:60:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_dmatrix.c: In function 'esl_dmatrix_CreateUpper': esl_dmatrix.c:104:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_dmatrix.c: In function 'esl_permutation_Create': esl_dmatrix.c:406:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_dmatrix.c: In function 'esl_dmx_Exp': esl_dmatrix.c:680:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl_dmatrix.c: In function 'esl_dmx_LUP_decompose': esl_dmatrix.c:934:37: warning: 'kpiv' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_exponential.o -c esl_exponential.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_fileparser.o -c esl_fileparser.c esl_fileparser.c: In function 'esl_fileparser_Create': esl_fileparser.c:106:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_gamma.o -c esl_gamma.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_getopts.o -c esl_getopts.c esl_getopts.c: In function 'esl_getopts_Create': esl_getopts.c:70:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_getopts.c: In function 'verify_type_and_range': esl_getopts.c:1604:7: warning: 'where' may be used uninitialized in this function [-Wuninitialized] esl_getopts.c: In function 'set_option': esl_getopts.c:1170:5: warning: 'where' may be used uninitialized in this function [-Wuninitialized] esl_getopts.c: In function 'esl_opt_ProcessCmdline': esl_getopts.c:1411:13: warning: 'opti' may be used uninitialized in this function [-Wuninitialized] esl_getopts.c:1382:9: note: 'opti' was declared here gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_gev.o -c esl_gev.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_gumbel.o -c esl_gumbel.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_histogram.o -c esl_histogram.c esl_histogram.c: In function 'esl_histogram_Create': esl_histogram.c:78:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_histogram.c: In function 'esl_histogram_CreateFull': esl_histogram.c:138:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_hmm.o -c esl_hmm.c esl_hmm.c: In function 'esl_hmm_Create': esl_hmm.c:34:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_hmm.c: In function 'esl_hmx_Create': esl_hmm.c:164:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_hyperexp.o -c esl_hyperexp.c esl_hyperexp.c: In function 'esl_hyperexp_Create': esl_hyperexp.c:57:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_keyhash.o -c esl_keyhash.c esl_keyhash.c: In function 'keyhash_create': esl_keyhash.c:339:8: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_keyhash.c: In function 'key_upsize': esl_keyhash.c:418:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_minimizer.o -c esl_minimizer.c esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent': esl_minimizer.c:319:31: warning: 'd' may be used uninitialized in this function [-Wuninitialized] esl_minimizer.c:289:10: note: 'd' was declared here esl_minimizer.c:293:18: warning: 'ax' may be used uninitialized in this function [-Wuninitialized] esl_minimizer.c:430:10: note: 'ax' was declared here esl_minimizer.c:293:18: warning: 'cx' may be used uninitialized in this function [-Wuninitialized] esl_minimizer.c:430:16: note: 'cx' was declared here gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_mixgev.o -c esl_mixgev.c esl_mixgev.c: In function 'esl_mixgev_Create': esl_mixgev.c:62:15: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_mpi.o -c esl_mpi.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_msa.o -c esl_msa.c esl_msa.c: In function 'create_mostly': esl_msa.c:123:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_msa.c: In function 'esl_msa_Create': esl_msa.c:551:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_msa.c: In function 'esl_msa_CreateDigital': esl_msa.c:1764:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_msa.c: In function 'append_selex_block': esl_msa.c:4915:23: warning: variable 'nright' set but not used [-Wunused-but-set-variable] esl_msa.c: In function 'gapize_string': esl_msa.c:5684:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_msa.c: In function 'msafile_open': esl_msa.c:1434:16: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl_msa.c: In function 'esl_msa_Read': esl_msa.c:5140:7: warning: 'i' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:5069:19: note: 'i' was declared here esl_msa.c:4752:5: warning: 'lalloc' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:4672:10: note: 'lalloc' was declared here esl_msa.c:5065:14: warning: 'seqidx' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:5063:14: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:4758:27: warning: 'rpos' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:4670:10: note: 'rpos' was declared here esl_msa.c:4757:27: warning: 'lpos' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:4669:10: note: 'lpos' was declared here esl_msa.c:4756:27: warning: 'llen' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:4668:10: note: 'llen' was declared here esl_msa.c:4947:8: warning: 's' may be used uninitialized in this function [-Wuninitialized] esl_msa.c:4912:9: note: 's' was declared here gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_msacluster.o -c esl_msacluster.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_msashuffle.o -c esl_msashuffle.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_msaweight.o -c esl_msaweight.c esl_msaweight.c: In function 'esl_msaweight_PB': esl_msaweight.c:311:5: warning: 'ntotal' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_normal.o -c esl_normal.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_paml.o -c esl_paml.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_random.o -c esl_random.c esl_random.c: In function 'esl_randomness_Create': esl_random.c:91:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_random.c: In function 'esl_randomness_CreateFast': esl_random.c:138:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_randomseq.o -c esl_randomseq.c esl_randomseq.c: In function 'esl_rsq_XShuffleDP': esl_randomseq.c:859:23: warning: 'Z' may be used uninitialized in this function [-Wuninitialized] esl_randomseq.c: In function 'esl_rsq_XMarkov1': esl_randomseq.c:1146:13: warning: 'p' may be used uninitialized in this function [-Wuninitialized] esl_randomseq.c:1147:6: warning: 'p0' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_ratematrix.o -c esl_ratematrix.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_regexp.o -c esl_regexp.c esl_regexp.c: In function 'esl_regexp_Create': esl_regexp.c:86:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_regexp.c: In function 'esl_regexp_SubmatchDup': esl_regexp.c:224:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_regexp.c: In function 'regcomp': esl_regexp.c:536:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_regexp.c: In function 'reg': esl_regexp.c:624:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_regexp.c: In function 'regpiece': esl_regexp.c:736:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_regexp.c: In function 'regatom': esl_regexp.c:812:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_regexp.c: In function 'regescape': esl_regexp.c:1569:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_regexp.c: In function 'regbranch': esl_regexp.c:708:18: warning: 'flags' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_rootfinder.o -c esl_rootfinder.c esl_rootfinder.c: In function 'esl_rootfinder_Create': esl_rootfinder.c:53:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_rootfinder.c: In function 'esl_rootfinder_CreateFDF': esl_rootfinder.c:107:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_scorematrix.o -c esl_scorematrix.c esl_scorematrix.c: In function 'esl_scorematrix_Create': esl_scorematrix.c:52:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_scorematrix.c: In function 'esl_scorematrix_SetWAG': esl_scorematrix.c:210:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl_scorematrix.c: In function 'esl_sco_Probify': esl_scorematrix.c:989:39: warning: 'lambda' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_sq.o -c esl_sq.c esl_sq.c: In function 'esl_sq_GetFromMSA': esl_sq.c:1540:3: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] esl_sq.c: In function 'sq_create': esl_sq.c:1667:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_sq.c: In function 'sq_createblock': esl_sq.c:1687:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_sq.c: In function 'sq_init': esl_sq.c:1714:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_sq.c: In function 'sq_create_from': esl_sq.c:1753:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_sqio.o -c esl_sqio.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_sqio_ascii.o -c esl_sqio_ascii.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_sqio_ncbi.o -c esl_sqio_ncbi.c esl_sqio_ncbi.c: In function 'read_dna': esl_sqio_ncbi.c:1199:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_sqio_ncbi.c: In function 'read_nres_dna': esl_sqio_ncbi.c:1462:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_sse.o -c esl_sse.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_ssi.o -c esl_ssi.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_stack.o -c esl_stack.c esl_stack.c: In function 'esl_stack_ICreate': esl_stack.c:48:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_stack.c: In function 'esl_stack_CCreate': esl_stack.c:77:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_stack.c: In function 'esl_stack_PCreate': esl_stack.c:106:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_stats.o -c esl_stats.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_stopwatch.o -c esl_stopwatch.c esl_stopwatch.c: In function 'esl_stopwatch_Create': esl_stopwatch.c:34:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_stretchexp.o -c esl_stretchexp.c esl_stretchexp.c: In function 'esl_sxp_invcdf': esl_stretchexp.c:176:10: warning: variable 'f1' set but not used [-Wunused-but-set-variable] esl_stretchexp.c: In function 'esl_sxp_FitComplete': esl_stretchexp.c:368:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_stretchexp.c: In function 'esl_sxp_FitCompleteBinned': esl_stretchexp.c:457:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_threads.o -c esl_threads.c esl_threads.c: In function 'esl_threads_Create': esl_threads.c:57:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_tree.o -c esl_tree.c esl_tree.c: In function 'esl_tree_Create': esl_tree.c:53:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl_tree.c: In function 'esl_tree_Grow': esl_tree.c:186:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_vectorops.o -c esl_vectorops.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_vmx.o -c esl_vmx.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_weibull.o -c esl_weibull.c gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_workqueue.o -c esl_workqueue.c esl_workqueue.c: In function 'esl_workqueue_Create': esl_workqueue.c:44:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -I. -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -o esl_wuss.o -c esl_wuss.c esl_wuss.c: In function 'esl_wuss2ct': esl_wuss.c:124:3: warning: 'status' may be used uninitialized in this function [-Wuninitialized] /usr/bin/ar rcv libeasel.a easel.o esl_alphabet.o esl_cluster.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_getopts.o esl_gev.o esl_gumbel.o esl_histogram.o esl_hmm.o esl_hyperexp.o esl_keyhash.o esl_minimizer.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_random.o esl_randomseq.o esl_ratematrix.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_sse.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_threads.o esl_tree.o esl_vectorops.o esl_vmx.o esl_weibull.o esl_workqueue.o esl_wuss.o a - easel.o a - esl_alphabet.o a - esl_cluster.o a - esl_dirichlet.o a - esl_distance.o a - esl_dmatrix.o a - esl_exponential.o a - esl_fileparser.o a - esl_gamma.o a - esl_getopts.o a - esl_gev.o a - esl_gumbel.o a - esl_histogram.o a - esl_hmm.o a - esl_hyperexp.o a - esl_keyhash.o a - esl_minimizer.o a - esl_mixgev.o a - esl_mpi.o a - esl_msa.o a - esl_msacluster.o a - esl_msashuffle.o a - esl_msaweight.o a - esl_normal.o a - esl_paml.o a - esl_random.o a - esl_randomseq.o a - esl_ratematrix.o a - esl_regexp.o a - esl_rootfinder.o a - esl_scorematrix.o a - esl_sq.o a - esl_sqio.o a - esl_sqio_ascii.o a - esl_sqio_ncbi.o a - esl_sse.o a - esl_ssi.o a - esl_stack.o a - esl_stats.o a - esl_stopwatch.o a - esl_stretchexp.o a - esl_threads.o a - esl_tree.o a - esl_vectorops.o a - esl_vmx.o a - esl_weibull.o a - esl_workqueue.o a - esl_wuss.o ranlib libeasel.a chmod 644 libeasel.a make[2]: Leaving directory `/«PKGBUILDDIR»/easel' cd src/impl_dummy; /usr/bin/make libhmmerimpl.a make[2]: Entering directory `/«PKGBUILDDIR»/src/impl_dummy' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c decoding.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c fwdback.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c io.c io.c: In function 'p7_oprofile_CreateBlock': io.c:447:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c msvfilter.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c null2.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c optacc.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c stotrace.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c vitfilter.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c p7_omx.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c p7_oprofile.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -c mpi.c /usr/bin/ar rcv libhmmerimpl.a decoding.o fwdback.o io.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o a - decoding.o a - fwdback.o a - io.o a - msvfilter.o a - null2.o a - optacc.o a - stotrace.o a - vitfilter.o a - p7_omx.o a - p7_oprofile.o a - mpi.o ranlib libhmmerimpl.a chmod 644 libhmmerimpl.a make[2]: Leaving directory `/«PKGBUILDDIR»/src/impl_dummy' cd src; /usr/bin/make libhmmer.a make[2]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c generic_stotrace.c: In function 'p7_GStochasticTrace': generic_stotrace.c:60:11: warning: 'scur' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c p7_alidisplay.c: In function 'p7_alidisplay_Create': p7_alidisplay.c:58:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c p7_bg.c: In function 'p7_bg_Create': p7_bg.c:53:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] p7_bg.c: In function 'p7_bg_CreateUniform': p7_bg.c:91:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c p7_builder.c: In function 'p7_builder_Create': p7_builder.c:60:15: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c p7_domaindef.c: In function 'p7_domaindef_Create': p7_domaindef.c:77:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c p7_gmx.c: In function 'p7_gmx_Create': p7_gmx.c:37:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c p7_hmm.c: In function 'p7_hmm_CreateShell': p7_hmm.c:84:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c p7_pipeline.c: In function 'p7_pipeline_Create': p7_pipeline.c:92:16: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c p7_prior.c: In function 'p7_prior_CreateAmino': p7_prior.c:44:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] p7_prior.c: In function 'p7_prior_CreateNucleic': p7_prior.c:188:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] p7_prior.c: In function 'p7_prior_CreateLaplace': p7_prior.c:319:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c p7_profile.c: In function 'p7_profile_Create': p7_profile.c:60:15: warning: variable 'status' set but not used [-Wunused-but-set-variable] p7_profile.c: In function 'p7_profile_Validate': p7_profile.c:487:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c p7_spensemble.c: In function 'p7_spensemble_Create': p7_spensemble.c:47:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] p7_spensemble.c: In function 'p7_spensemble_Cluster': p7_spensemble.c:345:23: warning: 'mmax' may be used uninitialized in this function [-Wuninitialized] p7_spensemble.c:345:23: warning: 'kmax' may be used uninitialized in this function [-Wuninitialized] p7_spensemble.c:345:23: warning: 'jmax' may be used uninitialized in this function [-Wuninitialized] p7_spensemble.c:345:23: warning: 'imax' may be used uninitialized in this function [-Wuninitialized] p7_spensemble.c:345:23: warning: 'mmin' may be used uninitialized in this function [-Wuninitialized] p7_spensemble.c:345:23: warning: 'kmin' may be used uninitialized in this function [-Wuninitialized] p7_spensemble.c:345:23: warning: 'jmin' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c p7_tophits.c: In function 'p7_tophits_Create': p7_tophits.c:43:15: warning: variable 'status' set but not used [-Wunused-but-set-variable] p7_tophits.c: In function 'p7_tophits_Grow': p7_tophits.c:84:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c p7_trace.c: In function 'trace_create_engine': p7_trace.c:82:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] /usr/bin/ar rcv libhmmer.a build.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domaindef.o p7_gmx.o p7_hmm.o p7_hmmfile.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o a - build.o a - emit.o a - errors.o a - evalues.o a - eweight.o a - generic_decoding.o a - generic_fwdback.o a - generic_null2.o a - generic_msv.o a - generic_optacc.o a - generic_stotrace.o a - generic_viterbi.o a - generic_vtrace.o a - h2_io.o a - heatmap.o a - hmmer.o a - logsum.o a - modelconfig.o a - modelstats.o a - mpisupport.o a - seqmodel.o a - tracealign.o a - p7_alidisplay.o a - p7_bg.o a - p7_builder.o a - p7_domaindef.o a - p7_gmx.o a - p7_hmm.o a - p7_hmmfile.o a - p7_pipeline.o a - p7_prior.o a - p7_profile.o a - p7_spensemble.o a - p7_tophits.o a - p7_trace.o ranlib libhmmer.a chmod 644 libhmmer.a make[2]: Leaving directory `/«PKGBUILDDIR»/src' cd easel; /usr/bin/make easel_progs make[2]: Entering directory `/«PKGBUILDDIR»/easel' cd miniapps; /usr/bin/make easel_progs make[3]: Entering directory `/«PKGBUILDDIR»/easel/miniapps' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-afetch.o -c esl-afetch.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-afetch esl-afetch.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimanip.o -c esl-alimanip.c esl-alimanip.c: In function 'msa_median_length': esl-alimanip.c:1222:8: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-alimanip.c: In function 'number_columns': esl-alimanip.c:1396:8: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-alimanip.c: In function 'convert_post_to_pp': esl-alimanip.c:2851:8: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-alimanip.c: In function 'main': esl-alimanip.c:524:4: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl-alimanip.c:483:4: warning: 'order' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-alimanip esl-alimanip.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimap.o -c esl-alimap.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-alimap esl-alimap.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimask.o -c esl-alimask.c esl-alimask.c: In function 'main': esl-alimask.c:1075:4: warning: 'ppidx_thresh' may be used uninitialized in this function [-Wuninitialized] esl-alimask.c:997:7: note: 'ppidx_thresh' was declared here gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-alimask esl-alimask.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimerge.o -c esl-alimerge.c esl-alimerge.c: In function 'gapize_string': esl-alimerge.c:1273:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-alimerge.c: In function 'determine_gap_columns_to_add': esl-alimerge.c:1347:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl-alimerge.c: In function 'validate_and_copy_msa_annotation': esl-alimerge.c:854:5: warning: 'found_tag' may be used uninitialized in this function [-Wuninitialized] esl-alimerge.c: In function 'main': esl-alimerge.c:439:15: warning: 'nali_cur' may be used uninitialized in this function [-Wuninitialized] esl-alimerge.c:362:34: warning: 'clen' may be used uninitialized in this function [-Wuninitialized] esl-alimerge.c:331:9: warning: 'namewidth' may be used uninitialized in this function [-Wuninitialized] esl-alimerge.c:195:7: warning: 'nalifile' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-alimerge esl-alimerge.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alistat.o -c esl-alistat.c esl-alistat.c: In function 'main': esl-alistat.c:267:12: warning: 'large' may be used uninitialized in this function [-Wuninitialized] esl-alistat.c:266:12: warning: 'small' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-alistat esl-alistat.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-cluster.o -c esl-cluster.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-cluster esl-cluster.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-compalign.o -c esl-compalign.c esl-compalign.c: In function 'main': esl-compalign.c:108:66: warning: variable 'tot_incor_pti' set but not used [-Wunused-but-set-variable] esl-compalign.c:108:51: warning: variable 'tot_incor_ptm' set but not used [-Wunused-but-set-variable] esl-compalign.c:347:22: warning: 'ppidx' may be used uninitialized in this function [-Wuninitialized] esl-compalign.c:244:15: warning: 'masklen' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-compalign esl-compalign.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-compstruct.o -c esl-compstruct.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-compstruct esl-compstruct.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-construct.o -c esl-construct.c esl-construct.c: In function 'main': esl-construct.c:80:17: warning: variable 'indi2cons' set but not used [-Wunused-but-set-variable] esl-construct.c: In function 'get_gaps_per_column': esl-construct.c:718:3: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] esl-construct.c: In function 'main': esl-construct.c:596:31: warning: 'fmin' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-construct esl-construct.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-histplot.o -c esl-histplot.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-histplot esl-histplot.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-mask.o -c esl-mask.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-mask esl-mask.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-reformat.o -c esl-reformat.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-reformat esl-reformat.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-selectn.o -c esl-selectn.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-selectn esl-selectn.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-seqstat.o -c esl-seqstat.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-seqstat esl-seqstat.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-sfetch.o -c esl-sfetch.c esl-sfetch.c: In function 'infernal_name_subseq': esl-sfetch.c:665:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-sfetch.c: In function 'main': esl-sfetch.c:614:34: warning: 'gc' may be used uninitialized in this function [-Wuninitialized] esl-sfetch.c:519:19: note: 'gc' was declared here esl-sfetch.c:613:34: warning: 'E' may be used uninitialized in this function [-Wuninitialized] esl-sfetch.c:518:24: note: 'E' was declared here esl-sfetch.c:623:54: warning: 'bit' may be used uninitialized in this function [-Wuninitialized] esl-sfetch.c:518:19: note: 'bit' was declared here esl-sfetch.c:614:34: warning: 'end' may be used uninitialized in this function [-Wuninitialized] esl-sfetch.c:514:26: note: 'end' was declared here esl-sfetch.c:614:34: warning: 'start' may be used uninitialized in this function [-Wuninitialized] esl-sfetch.c:514:19: note: 'start' was declared here esl-sfetch.c:653:12: warning: 'status' may be used uninitialized in this function [-Wuninitialized] esl-sfetch.c:511:7: note: 'status' was declared here gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-sfetch esl-sfetch.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-shuffle.o -c esl-shuffle.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-shuffle esl-shuffle.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-ssdraw.o -c esl-ssdraw.c esl-ssdraw.c: In function 'create_sspostscript': esl-ssdraw.c:923:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'setup_sspostscript': esl-ssdraw.c:1010:9: warning: variable 'header_fontwidth' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'create_onecell_colorlegend': esl-ssdraw.c:1128:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'create_scheme_colorlegend': esl-ssdraw.c:1157:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'draw_legend_column_headers': esl-ssdraw.c:1434:15: warning: variable 'legend_fontsize' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'insert_sspostscript': esl-ssdraw.c:3159:7: warning: variable 'apos' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'PairCount': esl-ssdraw.c:4312:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'get_insert_info_from_msa': esl-ssdraw.c:4910:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'get_insert_info_from_abc_ct': esl-ssdraw.c:5144:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'get_span_ct': esl-ssdraw.c:5231:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] esl-ssdraw.c: In function 'get_insert_info_from_ifile': esl-ssdraw.c:5090:41: warning: 'rfpos' may be used uninitialized in this function [-Wuninitialized] esl-ssdraw.c: In function 'parse_template_file.isra.3': esl-ssdraw.c:2427:17: warning: 'nalloc' may be used uninitialized in this function [-Wuninitialized] esl-ssdraw.c:2382:9: note: 'nalloc' was declared here esl-ssdraw.c:2326:20: warning: 'nalloc' may be used uninitialized in this function [-Wuninitialized] esl-ssdraw.c:2279:9: note: 'nalloc' was declared here esl-ssdraw.c:1937:10: warning: 'ps' may be used uninitialized in this function [-Wuninitialized] esl-ssdraw.c: In function 'draw_sspostscript.isra.21': esl-ssdraw.c:4737:2: warning: 'split_idx' may be used uninitialized in this function [-Wuninitialized] esl-ssdraw.c:4631:10: note: 'split_idx' was declared here esl-ssdraw.c: In function 'main': esl-ssdraw.c:680:5: warning: 'status' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-ssdraw esl-ssdraw.o -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-weight.o -c esl-weight.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L.. -o esl-weight esl-weight.o -leasel -lm make[3]: Leaving directory `/«PKGBUILDDIR»/easel/miniapps' make[2]: Leaving directory `/«PKGBUILDDIR»/easel' cd src; /usr/bin/make hmmer_progs make[2]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmalign hmmalign.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmbuild hmmbuild.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmconvert hmmconvert.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmemit hmmemit.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmfetch hmmfetch.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmpress hmmpress.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmscan hmmscan.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmsearch hmmsearch.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c hmmsim.c: In function 'main': hmmsim.c:796:60: warning: 'lambda' may be used uninitialized in this function [-Wuninitialized] hmmsim.c:371:19: note: 'lambda' was declared here hmmsim.c:796:60: warning: 'mu' may be used uninitialized in this function [-Wuninitialized] hmmsim.c:371:15: note: 'mu' was declared here gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmsim hmmsim.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o hmmstat hmmstat.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o jackhmmer jackhmmer.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o phmmer phmmer.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm make[2]: Leaving directory `/«PKGBUILDDIR»/src' cd profmark; /usr/bin/make profmark_progs make[2]: Entering directory `/«PKGBUILDDIR»/profmark' gcc -std=gnu99 -I../easel -I../easel -I../src -I../src -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c create-profmark.c: In function 'remove_fragments': create-profmark.c:314:12: warning: variable 'nfrags' set but not used [-Wunused-but-set-variable] create-profmark.c: In function 'separate_sets': create-profmark.c:352:8: warning: variable 'ntrain' set but not used [-Wunused-but-set-variable] create-profmark.c: In function 'set_random_segment': create-profmark.c:658:6: warning: 'status' may be used uninitialized in this function [-Wuninitialized] create-profmark.c: In function 'main': create-profmark.c:242:11: warning: 'ntest' may be used uninitialized in this function [-Wuninitialized] create-profmark.c:242:11: warning: 'nfrags' may be used uninitialized in this function [-Wuninitialized] create-profmark.c:525:20: warning: 'j' may be used uninitialized in this function [-Wuninitialized] create-profmark.c:434:13: note: 'j' was declared here gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lm gcc -std=gnu99 -I../easel -I../easel -I../src -I../src -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c rocplot.c: In function 'create_plot': rocplot.c:399:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lm make[2]: Leaving directory `/«PKGBUILDDIR»/profmark' make[1]: Leaving directory `/«PKGBUILDDIR»' touch debian/stamp-makefile-build /usr/bin/make -C . check make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/make all make[2]: Entering directory `/«PKGBUILDDIR»' cd easel; /usr/bin/make libeasel.a make[3]: Entering directory `/«PKGBUILDDIR»/easel' make[3]: `libeasel.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/easel' cd src/impl_dummy; /usr/bin/make libhmmerimpl.a make[3]: Entering directory `/«PKGBUILDDIR»/src/impl_dummy' make[3]: `libhmmerimpl.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src/impl_dummy' cd src; /usr/bin/make libhmmer.a make[3]: Entering directory `/«PKGBUILDDIR»/src' make[3]: `libhmmer.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src' cd easel; /usr/bin/make easel_progs make[3]: Entering directory `/«PKGBUILDDIR»/easel' cd miniapps; /usr/bin/make easel_progs make[4]: Entering directory `/«PKGBUILDDIR»/easel/miniapps' make[4]: Nothing to be done for `easel_progs'. make[4]: Leaving directory `/«PKGBUILDDIR»/easel/miniapps' make[3]: Leaving directory `/«PKGBUILDDIR»/easel' cd src; /usr/bin/make hmmer_progs make[3]: Entering directory `/«PKGBUILDDIR»/src' make[3]: Nothing to be done for `hmmer_progs'. make[3]: Leaving directory `/«PKGBUILDDIR»/src' cd profmark; /usr/bin/make profmark_progs make[3]: Entering directory `/«PKGBUILDDIR»/profmark' make[3]: Nothing to be done for `profmark_progs'. make[3]: Leaving directory `/«PKGBUILDDIR»/profmark' make[2]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make utests make[2]: Entering directory `/«PKGBUILDDIR»' cd easel; /usr/bin/make libeasel.a make[3]: Entering directory `/«PKGBUILDDIR»/easel' make[3]: `libeasel.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/easel' cd src/impl_dummy; /usr/bin/make libhmmerimpl.a make[3]: Entering directory `/«PKGBUILDDIR»/src/impl_dummy' make[3]: `libhmmerimpl.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src/impl_dummy' cd src; /usr/bin/make libhmmer.a make[3]: Entering directory `/«PKGBUILDDIR»/src' make[3]: `libhmmer.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src' cd easel; /usr/bin/make easel_utests make[3]: Entering directory `/«PKGBUILDDIR»/easel' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm ./esl_alphabet.c: In function 'esl_alphabet_Create': ./esl_alphabet.c:52:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_alphabet.c: In function 'esl_alphabet_CreateCustom': ./esl_alphabet.c:106:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_alphabet.c: In function 'utest_TextizeN': ./esl_alphabet.c:1881:17: warning: variable 'L' set but not used [-Wunused-but-set-variable] ./esl_alphabet.c: In function 'esl_alphabet_CreateCustom': ./esl_alphabet.c:170:23: warning: 'a' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm ./esl_dirichlet.c: In function 'esl_mixdchlet_Create': ./esl_dirichlet.c:56:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_dirichlet.c: In function 'esl_mixdchlet_Fit_Multipass': ./esl_dirichlet.c:902:4: warning: 'status' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm ./esl_distance.c: In function 'main': ./esl_distance.c:1230:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_distance.c: In function 'esl_dst_CPairIdMx': ./esl_distance.c:356:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] ./esl_distance.c: In function 'esl_dst_CJukesCantorMx': ./esl_distance.c:469:16: warning: 'status' may be used uninitialized in this function [-Wuninitialized] ./esl_distance.c: In function 'esl_dst_XPairIdMx': ./esl_distance.c:541:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] ./esl_distance.c: In function 'esl_dst_XJukesCantorMx': ./esl_distance.c:655:16: warning: 'status' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm ./esl_dmatrix.c: In function 'esl_dmatrix_Create': ./esl_dmatrix.c:60:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_dmatrix.c: In function 'esl_dmatrix_CreateUpper': ./esl_dmatrix.c:104:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_dmatrix.c: In function 'esl_permutation_Create': ./esl_dmatrix.c:406:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_dmatrix.c: In function 'esl_dmx_Exp': ./esl_dmatrix.c:680:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] ./esl_dmatrix.c: In function 'esl_dmx_LUP_decompose': ./esl_dmatrix.c:934:37: warning: 'kpiv' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm ./esl_exponential.c: In function 'main': ./esl_exponential.c:614:33: warning: 'xmax' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm ./esl_fileparser.c: In function 'esl_fileparser_Create': ./esl_fileparser.c:106:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm ./esl_gamma.c: In function 'main': ./esl_gamma.c:629:33: warning: 'xmax' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm ./esl_getopts.c: In function 'esl_getopts_Create': ./esl_getopts.c:70:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_getopts.c: In function 'verify_type_and_range': ./esl_getopts.c:1604:7: warning: 'where' may be used uninitialized in this function [-Wuninitialized] ./esl_getopts.c: In function 'set_option': ./esl_getopts.c:1170:5: warning: 'where' may be used uninitialized in this function [-Wuninitialized] ./esl_getopts.c: In function 'esl_opt_ProcessCmdline': ./esl_getopts.c:1411:13: warning: 'opti' may be used uninitialized in this function [-Wuninitialized] ./esl_getopts.c:1382:9: note: 'opti' was declared here gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm ./esl_histogram.c: In function 'esl_histogram_Create': ./esl_histogram.c:78:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_histogram.c: In function 'esl_histogram_CreateFull': ./esl_histogram.c:138:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_histogram.c: In function 'main': ./esl_histogram.c:1625:19: warning: 'fstrategy' may be used uninitialized in this function [-Wuninitialized] ./esl_histogram.c:1623:46: warning: 'bstrategy' may be used uninitialized in this function [-Wuninitialized] ./esl_histogram.c:1623:46: warning: 'cstrategy' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm ./esl_hyperexp.c: In function 'esl_hyperexp_Create': ./esl_hyperexp.c:57:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_hyperexp.c: In function 'main': ./esl_hyperexp.c:1393:33: warning: 'xmax' may be used uninitialized in this function [-Wuninitialized] ./esl_hyperexp.c:1393:33: warning: 'xmin' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm ./esl_keyhash.c: In function 'keyhash_create': ./esl_keyhash.c:339:8: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_keyhash.c: In function 'key_upsize': ./esl_keyhash.c:418:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_keyhash.c: In function 'main': ./esl_keyhash.c:733:3: warning: 'k42' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm ./esl_msa.c: In function 'create_mostly': ./esl_msa.c:123:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_msa.c: In function 'esl_msa_Create': ./esl_msa.c:551:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_msa.c: In function 'esl_msa_CreateDigital': ./esl_msa.c:1764:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_msa.c: In function 'append_selex_block': ./esl_msa.c:4915:23: warning: variable 'nright' set but not used [-Wunused-but-set-variable] ./esl_msa.c: In function 'gapize_string': ./esl_msa.c:5684:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_msa.c: In function 'msafile_open': ./esl_msa.c:1434:16: warning: 'status' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c: In function 'esl_msa_Read': ./esl_msa.c:5140:7: warning: 'i' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:5069:19: note: 'i' was declared here ./esl_msa.c:4752:5: warning: 'lalloc' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:4672:10: note: 'lalloc' was declared here ./esl_msa.c:5065:14: warning: 'seqidx' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:5063:14: warning: 'status' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:4758:27: warning: 'rpos' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:4670:10: note: 'rpos' was declared here ./esl_msa.c:4757:27: warning: 'lpos' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:4669:10: note: 'lpos' was declared here ./esl_msa.c:4756:27: warning: 'llen' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:4668:10: note: 'llen' was declared here ./esl_msa.c:4947:8: warning: 's' may be used uninitialized in this function [-Wuninitialized] ./esl_msa.c:4912:9: note: 's' was declared here gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm ./esl_msaweight.c: In function 'esl_msaweight_PB': ./esl_msaweight.c:311:5: warning: 'ntotal' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm ./esl_random.c: In function 'esl_randomness_Create': ./esl_random.c:91:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_random.c: In function 'esl_randomness_CreateFast': ./esl_random.c:138:19: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm ./esl_randomseq.c: In function 'utest_CShufflers': ./esl_randomseq.c:1360:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_randomseq.c: In function 'utest_CMarkovs': ./esl_randomseq.c:1480:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_randomseq.c: In function 'utest_XShufflers': ./esl_randomseq.c:1579:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_randomseq.c: In function 'utest_XMarkovs': ./esl_randomseq.c:1688:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_randomseq.c: In function 'esl_rsq_XShuffleDP': ./esl_randomseq.c:859:23: warning: 'Z' may be used uninitialized in this function [-Wuninitialized] ./esl_randomseq.c: In function 'esl_rsq_XMarkov1': ./esl_randomseq.c:1146:13: warning: 'p' may be used uninitialized in this function [-Wuninitialized] ./esl_randomseq.c:1147:6: warning: 'p0' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm ./esl_regexp.c: In function 'esl_regexp_Create': ./esl_regexp.c:86:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_regexp.c: In function 'esl_regexp_SubmatchDup': ./esl_regexp.c:224:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_regexp.c: In function 'regcomp': ./esl_regexp.c:536:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_regexp.c: In function 'reg': ./esl_regexp.c:624:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_regexp.c: In function 'regpiece': ./esl_regexp.c:736:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_regexp.c: In function 'regatom': ./esl_regexp.c:812:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_regexp.c: In function 'regescape': ./esl_regexp.c:1569:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_regexp.c: In function 'regbranch': ./esl_regexp.c:708:18: warning: 'flags' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm ./esl_rootfinder.c: In function 'esl_rootfinder_Create': ./esl_rootfinder.c:53:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_rootfinder.c: In function 'esl_rootfinder_CreateFDF': ./esl_rootfinder.c:107:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm ./esl_scorematrix.c: In function 'esl_scorematrix_Create': ./esl_scorematrix.c:52:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_scorematrix.c: In function 'esl_scorematrix_SetWAG': ./esl_scorematrix.c:210:7: warning: 'status' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm ./esl_sq.c: In function 'esl_sq_GetFromMSA': ./esl_sq.c:1540:3: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] ./esl_sq.c: In function 'sq_create': ./esl_sq.c:1667:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_sq.c: In function 'sq_createblock': ./esl_sq.c:1687:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_sq.c: In function 'sq_init': ./esl_sq.c:1714:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_sq.c: In function 'sq_create_from': ./esl_sq.c:1753:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm ./esl_stack.c: In function 'esl_stack_ICreate': ./esl_stack.c:48:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_stack.c: In function 'esl_stack_CCreate': ./esl_stack.c:77:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_stack.c: In function 'esl_stack_PCreate': ./esl_stack.c:106:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_stack.c: In function 'utest_shuffle': ./esl_stack.c:517:19: warning: variable 'appears_shuffled' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm ./esl_stretchexp.c: In function 'esl_sxp_invcdf': ./esl_stretchexp.c:176:10: warning: variable 'f1' set but not used [-Wunused-but-set-variable] ./esl_stretchexp.c: In function 'esl_sxp_FitComplete': ./esl_stretchexp.c:368:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_stretchexp.c: In function 'esl_sxp_FitCompleteBinned': ./esl_stretchexp.c:457:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm ./esl_tree.c: In function 'esl_tree_Create': ./esl_tree.c:53:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./esl_tree.c: In function 'esl_tree_Grow': ./esl_tree.c:186:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm ./esl_weibull.c: In function 'main': ./esl_weibull.c:731:33: warning: 'xmax' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -Wl,-z,relro -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm ./esl_wuss.c: In function 'esl_wuss2ct': ./esl_wuss.c:124:3: warning: 'status' may be used uninitialized in this function [-Wuninitialized] make[3]: Leaving directory `/«PKGBUILDDIR»/easel' cd src; /usr/bin/make hmmer_utests make[3]: Entering directory `/«PKGBUILDDIR»/src' cd impl_dummy; /usr/bin/make impl_utests make[4]: Entering directory `/«PKGBUILDDIR»/src/impl_dummy' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7IO_TESTDRIVE -o io_utest ./io.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./io.c: In function 'p7_oprofile_CreateBlock': ./io.c:447:7: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../../easel -L.. -L. -I../../easel -I../../easel -I. -I.. -I. -I../../src -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm make[4]: Leaving directory `/«PKGBUILDDIR»/src/impl_dummy' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./generic_fwdback.c: In function 'utest_enumeration': ./generic_fwdback.c:562:10: warning: variable 'vp' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./generic_stotrace.c: In function 'p7_GStochasticTrace': ./generic_stotrace.c:60:11: warning: 'scur' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./p7_gmx.c: In function 'p7_gmx_Create': ./p7_gmx.c:37:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./p7_hmm.c: In function 'p7_hmm_CreateShell': ./p7_hmm.c:84:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./p7_profile.c: In function 'p7_profile_Create': ./p7_profile.c:60:15: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./p7_profile.c: In function 'p7_profile_Validate': ./p7_profile.c:487:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./p7_tophits.c: In function 'p7_tophits_Create': ./p7_tophits.c:43:15: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./p7_tophits.c: In function 'p7_tophits_Grow': ./p7_tophits.c:84:11: warning: variable 'status' set but not used [-Wunused-but-set-variable] ./p7_tophits.c: In function 'main': ./p7_tophits.c:1363:17: warning: 'key' may be used uninitialized in this function [-Wuninitialized] gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_CONFIG_H -L../easel -L./impl_dummy -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm ./p7_trace.c: In function 'trace_create_engine': ./p7_trace.c:82:13: warning: variable 'status' set but not used [-Wunused-but-set-variable] make[3]: Leaving directory `/«PKGBUILDDIR»/src' make[2]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make itests make[2]: Entering directory `/«PKGBUILDDIR»' cd easel; /usr/bin/make libeasel.a make[3]: Entering directory `/«PKGBUILDDIR»/easel' make[3]: `libeasel.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/easel' cd src/impl_dummy; /usr/bin/make libhmmerimpl.a make[3]: Entering directory `/«PKGBUILDDIR»/src/impl_dummy' make[3]: `libhmmerimpl.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src/impl_dummy' cd src; /usr/bin/make libhmmer.a make[3]: Entering directory `/«PKGBUILDDIR»/src' make[3]: `libhmmer.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src' cd src; /usr/bin/make hmmer_itests make[3]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c gcc -std=gnu99 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -pthread -DHAVE_CONFIG_H -Wl,-z,relro -L../easel -L./impl_dummy -L. -o itest_brute itest_brute.o -Wl,--start-group -lhmmer -lhmmerimpl -Wl,--end-group -leasel -lm make[3]: Leaving directory `/«PKGBUILDDIR»/src' make[2]: Leaving directory `/«PKGBUILDDIR»' /usr/bin/make testsuite make[2]: Entering directory `/«PKGBUILDDIR»' cd easel; /usr/bin/make libeasel.a make[3]: Entering directory `/«PKGBUILDDIR»/easel' make[3]: `libeasel.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/easel' cd src/impl_dummy; /usr/bin/make libhmmerimpl.a make[3]: Entering directory `/«PKGBUILDDIR»/src/impl_dummy' make[3]: `libhmmerimpl.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src/impl_dummy' cd src; /usr/bin/make libhmmer.a make[3]: Entering directory `/«PKGBUILDDIR»/src' make[3]: `libhmmer.a' is up to date. make[3]: Leaving directory `/«PKGBUILDDIR»/src' cd testsuite; /usr/bin/make testsuite_progs make[3]: Entering directory `/«PKGBUILDDIR»/testsuite' make[3]: Nothing to be done for `testsuite_progs'. make[3]: Leaving directory `/«PKGBUILDDIR»/testsuite' make[2]: Leaving directory `/«PKGBUILDDIR»' cd easel; /usr/bin/make run_sqc make[2]: Entering directory `/«PKGBUILDDIR»/easel' cd testsuite; /usr/bin/make run_sqc make[3]: Entering directory `/«PKGBUILDDIR»/easel/testsuite' Running Easel test suite... Legacy library getopts.pl will be removed from the Perl core distribution in the next major release. Please install the separate libperl4-corelibs-perl package. It is being used at ./../devkit/sqc, line 208. Legacy library importenv.pl will be removed from the Perl core distribution in the next major release. Please install the separate libperl4-corelibs-perl package. It is being used at ./../devkit/sqc, line 209. exercise 1 [ alphabet-utest] ... ok. exercise 2 [ cluster-utest] ... ok. exercise 3 [ dirichlet-utest] ... ok. exercise 4 [ distance-utest] ... ok. exercise 5 [ dmatrix-utest] ... ok. exercise 6 [ easel-utest] ... ok. exercise 7 [ exponential-utest] ... ok. exercise 8 [ fileparser-utest] ... ok. exercise 9 [ gamma-utest] ... ok. exercise 10 [ getopts-utest] ... ok. exercise 11 [ gumbel-utest] ... ok. exercise 12 [ histogram-utest] ... ok. exercise 13 [ hyperexp-utest] ... ok. exercise 14 [ keyhash-utest] ... ok. exercise 15 [ msa-utest] ... ok. exercise 16 [ msacluster-utest] ... ok. exercise 17 [ msaweight-utest] ... ok. exercise 18 [ random-utest] ... ok. exercise 19 [ randomseq-utest] ... ok. exercise 20 [ ratematrix-utest] ... ok. exercise 21 [ regexp-utest] ... ok. exercise 22 [ rootfinder-utest] ... ok. exercise 23 [ scorematrix-utest] ... ok. exercise 24 [ sq-utest] ... ok. exercise 25 [ sqio-utest] ... ok. exercise 26 [ sse-utest] ... ok. exercise 27 [ ssi-utest] ... ok. exercise 28 [ stack-utest] ... ok. exercise 29 [ stats-utest] ... ok. exercise 30 [ stretchexp-utest] ... ok. exercise 31 [ tree-utest] ... ok. exercise 32 [ vectorops-utest] ... ok. exercise 33 [ weibull-utest] ... ok. exercise 34 [ wuss-utest] ... ok. exercise 35 [ e2] ... ok. exercise 36 [ degen-residues] ... ok. exercise 37 [ ncbi-indices] ... ok. exercise 38 [ esl-alimanip] ... ok. exercise 39 [ esl-alimap] ... ok. exercise 40 [ esl-alimask] ... ok. exercise 41 [ esl-alimerge] ... ok. exercise 42 [ esl-alistat] ... ok. exercise 43 [ esl-compalign] ... ok. exercise 44 [ esl-construct] ... ok. exercise 45 [ esl-mask] ... ok. exercise 46 [ esl-shuffle] ... ok. All 46 exercises at level <= 2 passed. System information: Fri May 11 22:32:17 UTC 2012 Linux build01.raspbian.lan 3.2.0-2-mx5 #1 Sun Apr 15 19:59:08 UTC 2012 armv7l GNU/Linux make[3]: Leaving directory `/«PKGBUILDDIR»/easel/testsuite' make[2]: Leaving directory `/«PKGBUILDDIR»/easel' cd testsuite; /usr/bin/make run_sqc make[2]: Entering directory `/«PKGBUILDDIR»/testsuite' Running HMMER test suite... Legacy library getopts.pl will be removed from the Perl core distribution in the next major release. Please install the separate libperl4-corelibs-perl package. It is being used at ./../easel/devkit/sqc, line 208. Legacy library importenv.pl will be removed from the Perl core distribution in the next major release. Please install the separate libperl4-corelibs-perl package. It is being used at ./../easel/devkit/sqc, line 209. exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ logsum] ... ok. exercise 8 [ modelconfig] ... ok. exercise 9 [ p7_gmx] ... ok. exercise 10 [ p7_hmm] ... ok. exercise 11 [ p7_hmmfile] ... ok. exercise 12 [ p7_profile] ... ok. exercise 13 [ p7_tophits] ... ok. exercise 14 [ p7_trace] ... ok. exercise 15 [ decoding] ... ok. exercise 16 [ fwdback] ... ok. Aborted exercise 17 [ io] ... FAILED [crash!] exercise 18 [ msvfilter] ... ok. exercise 19 [ null2] ... ok. exercise 20 [ optacc] ... ok. exercise 21 [ stotrace] ... ok. exercise 22 [ vitfilter] ... ok. exercise 23 [ hmmalign] ... ok. exercise 24 [ hmmalign/-h] ... ok. exercise 25 [ hmmalign/-o] ... ok. exercise 26 [ hmmalign/--allcol] ... ok. exercise 27 [ hmmalign/--mapali] ... ok. exercise 28 [ hmmalign/--trim] ... ok. exercise 29 [ hmmalign/--amino] ... ok. exercise 30 [ hmmalign/--informat] ... ok. exercise 31 [hmmalign/--outformat] ... ok. exercise 32 [ build] ... ok. exercise 33 [ build/-h] ... ok. exercise 34 [ build/-n] ... ok. exercise 35 [ build/-o] ... ok. exercise 36 [ build/-O] ... ok. exercise 37 [ build/--amino] ... ok. exercise 38 [ build/--dna] ... ok. exercise 39 [ build/--rna] ... ok. exercise 40 [ build/--fast] ... ok. exercise 41 [ build/--hand] ... ok. exercise 42 [ build/--symfrac] ... ok. exercise 43 [ build/--fragthresh] ... ok. exercise 44 [ build/--wpb] ... ok. exercise 45 [ build/--wgsc] ... ok. exercise 46 [ build/--wblosum] ... ok. exercise 47 [ build/--wnone] ... ok. exercise 48 [ build/--wid] ... ok. exercise 49 [ build/--eent] ... ok. exercise 50 [ build/--eclust] ... ok. exercise 51 [ build/--enone] ... ok. exercise 52 [ build/--eset] ... ok. exercise 53 [ build/--ere] ... ok. exercise 54 [ build/--esigma] ... ok. exercise 55 [ build/--eid] ... ok. exercise 56 [ build/--EmL] ... ok. exercise 57 [ build/--EmN] ... ok. exercise 58 [ build/--EvL] ... ok. exercise 59 [ build/--EvN] ... ok. exercise 60 [ build/--EfL] ... ok. exercise 61 [ build/--EfN] ... ok. exercise 62 [ build/--Eft] ... ok. exercise 63 [ build/--informat] ... ok. exercise 64 [ build/--seed] ... ok. exercise 65 [ build/--laplace] ... ok. exercise 66 [ hmmemit] ... ok. exercise 67 [ hmmemit/-h] ... ok. exercise 68 [ hmmemit/-c] ... ok. exercise 69 [ hmmemit/-o] ... ok. exercise 70 [ hmmemit/-p] ... ok. exercise 71 [ hmmemit/-N] ... ok. exercise 72 [ hmmemit/-L] ... ok. exercise 73 [ hmmemit/--local] ... ok. exercise 74 [ hmmemit/--unilocal] ... ok. exercise 75 [ hmmemit/--glocal] ... ok. exercise 76 [ hmmemit/--uniglocal] ... ok. exercise 77 [ search] ... ok. exercise 78 [ search/-h] ... ok. exercise 79 [ search/-o] ... ok. exercise 80 [ search/-A] ... ok. exercise 81 [ search/--tblout] ... ok. exercise 82 [ search/--domtblout] ... ok. exercise 83 [ search/--acc] ... ok. exercise 84 [ search/--noali] ... ok. exercise 85 [ search/--notextw] ... ok. exercise 86 [ search/--textw] ... ok. exercise 87 [ search/-E] ... ok. exercise 88 [ search/-T] ... ok. exercise 89 [ search/--domE] ... ok. exercise 90 [ search/--domT] ... ok. exercise 91 [ search/--incE] ... ok. exercise 92 [ search/--incT] ... ok. exercise 93 [ search/--incdomE] ... ok. exercise 94 [ search/--incdomT] ... ok. exercise 95 [ search/--cut_ga] ... ok. exercise 96 [ search/--cut_nc] ... ok. exercise 97 [ search/--cut_tc] ... ok. exercise 98 [ search/--max] ... ok. exercise 99 [ search/--F1] ... ok. exercise 100 [ search/--F2] ... ok. exercise 101 [ search/--F3] ... ok. exercise 102 [ search/--nobias] ... ok. exercise 103 [ search/--nonull2] ... ok. exercise 104 [ search/-Z] ... ok. exercise 105 [ search/--domZ] ... ok. exercise 106 [ search/--seed] ... ok. exercise 107 [ search/--tformat] ... ok. exercise 108 [ jackhmmer] ... ok. exercise 109 [ j/-h] ... ok. exercise 110 [ j/-N] ... ok. exercise 111 [ j/-o] ... ok. exercise 112 [ j/-A] ... ok. exercise 113 [ j/--tblout] ... ok. exercise 114 [ j/--domtblout] ... ok. exercise 115 [ j/--chkhmm] ... ok. exercise 116 [ j/--chkali] ... ok. exercise 117 [ j/--acc] ... ok. exercise 118 [ j/--noali] ... ok. exercise 119 [ j/--notextw] ... ok. exercise 120 [ j/--textw] ... ok. exercise 121 [ j/--popen] ... ok. exercise 122 [ j/--pextend] ... ok. exercise 123 [ j/--mxfile] ... ok. exercise 124 [ j/-E] ... ok. exercise 125 [ j/-T] ... ok. exercise 126 [ j/--domE] ... ok. exercise 127 [ j/--domT] ... ok. exercise 128 [ j/--incE] ... ok. exercise 129 [ j/--incT] ... ok. exercise 130 [ j/--incdomE] ... ok. exercise 131 [ j/--incdomT] ... ok. exercise 132 [ j/--max] ... ok. exercise 133 [ j/--F1] ... ok. exercise 134 [ j/--F2] ... ok. exercise 135 [ j/--F3] ... ok. exercise 136 [ j/--nobias] ... ok. exercise 137 [ j/--EmL] ... ok. exercise 138 [ j/--EmN] ... ok. exercise 139 [ j/--EvL] ... ok. exercise 140 [ j/--EvN] ... ok. exercise 141 [ j/--EfL] ... ok. exercise 142 [ j/--EfN] ... ok. exercise 143 [ j/--Eft] ... ok. exercise 144 [ j/--nonull2] ... ok. exercise 145 [ j/-Z] ... ok. exercise 146 [ j/--domZ] ... ok. exercise 147 [ j/--seed] ... ok. exercise 148 [ j/--qformat] ... ok. exercise 149 [ j/--tformat] ... ok. exercise 150 [ phmmer] ... ok. exercise 151 [ phmmer/-h] ... ok. exercise 152 [ phmmer/-o] ... ok. exercise 153 [ phmmer/-A] ... ok. exercise 154 [ phmmer/--tblout] ... ok. exercise 155 [ phmmer/--domtblout] ... ok. exercise 156 [ phmmer/--acc] ... ok. exercise 157 [ phmmer/--noali] ... ok. exercise 158 [ phmmer/--notextw] ... ok. exercise 159 [ phmmer/--textw] ... ok. exercise 160 [ phmmer/--popen] ... ok. exercise 161 [ phmmer/--pextend] ... ok. exercise 162 [ phmmer/--mxfile] ... ok. exercise 163 [ phmmer/-E] ... ok. exercise 164 [ phmmer/-T] ... ok. exercise 165 [ phmmer/--domE] ... ok. exercise 166 [ phmmer/--domT] ... ok. exercise 167 [ phmmer/--incE] ... ok. exercise 168 [ phmmer/--incT] ... ok. exercise 169 [ phmmer/--incdomE] ... ok. exercise 170 [ phmmer/--incdomT] ... ok. exercise 171 [ phmmer/--max] ... ok. exercise 172 [ phmmer/--F1] ... ok. exercise 173 [ phmmer/--F2] ... ok. exercise 174 [ phmmer/--F3] ... ok. exercise 175 [ phmmer/--nobias] ... ok. exercise 176 [ phmmer/--EmL] ... ok. exercise 177 [ phmmer/--EmN] ... ok. exercise 178 [ phmmer/--EvL] ... ok. exercise 179 [ phmmer/--EvN] ... ok. exercise 180 [ phmmer/--EfL] ... ok. exercise 181 [ phmmer/--EfN] ... ok. exercise 182 [ phmmer/--Eft] ... ok. exercise 183 [ phmmer/--nonull2] ... ok. exercise 184 [ phmmer/-Z] ... ok. exercise 185 [ phmmer/--domZ] ... ok. exercise 186 [ phmmer/--seed] ... ok. exercise 187 [ phmmer/--qformat] ... ok. exercise 188 [ phmmer/--tformat] ... ok. exercise 189 [ hmmbuild_variation] ... ok. exercise 190 [ hmmscan_variation] ... ok. exercise 191 [ hmmsearch_variation] ... ok. exercise 192 [ phmmer_variation] ... ok. exercise 193 [ mapali] ... ok. exercise 194 [ fragments] ... ok. exercise 195 [ nonresidues] ... FAILED [command failed] exercise 196 [ opt-annotation] ... ok. exercise 197 [ dup-names] ... ok. exercise 198 [ mapali-again] ... ok. exercise 199 [ delete-corruption] ... ok. exercise 200 [ brute-itest] ... ok. exercise 201 [ hmmpress-itest] ... ok. exercise 202 [ h39] ... ok. exercise 203 [ h45] ... ok. exercise 204 [ h50] ... ok. 2 of 204 exercises at level <= 2 FAILED. System information: Fri May 11 23:20:07 UTC 2012 Linux build01.raspbian.lan 3.2.0-2-mx5 #1 Sun Apr 15 19:59:08 UTC 2012 armv7l GNU/Linux make[2]: Leaving directory `/«PKGBUILDDIR»/testsuite' make[1]: Leaving directory `/«PKGBUILDDIR»' touch debian/stamp-makefile-check fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./easel/config.guess ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./easel/config.sub ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi /usr/bin/make -C . install prefix=/«PKGBUILDDIR»/debian/tmp/usr make[1]: Entering directory `/«PKGBUILDDIR»' cd easel; /usr/bin/make libeasel.a make[2]: Entering directory `/«PKGBUILDDIR»/easel' make[2]: `libeasel.a' is up to date. make[2]: Leaving directory `/«PKGBUILDDIR»/easel' cd src/impl_dummy; /usr/bin/make libhmmerimpl.a make[2]: Entering directory `/«PKGBUILDDIR»/src/impl_dummy' make[2]: `libhmmerimpl.a' is up to date. make[2]: Leaving directory `/«PKGBUILDDIR»/src/impl_dummy' cd src; /usr/bin/make libhmmer.a make[2]: Entering directory `/«PKGBUILDDIR»/src' make[2]: `libhmmer.a' is up to date. make[2]: Leaving directory `/«PKGBUILDDIR»/src' cd easel; /usr/bin/make easel_progs make[2]: Entering directory `/«PKGBUILDDIR»/easel' cd miniapps; /usr/bin/make easel_progs make[3]: Entering directory `/«PKGBUILDDIR»/easel/miniapps' make[3]: Nothing to be done for `easel_progs'. make[3]: Leaving directory `/«PKGBUILDDIR»/easel/miniapps' make[2]: Leaving directory `/«PKGBUILDDIR»/easel' cd src; /usr/bin/make hmmer_progs make[2]: Entering directory `/«PKGBUILDDIR»/src' make[2]: Nothing to be done for `hmmer_progs'. make[2]: Leaving directory `/«PKGBUILDDIR»/src' cd profmark; /usr/bin/make profmark_progs make[2]: Entering directory `/«PKGBUILDDIR»/profmark' make[2]: Nothing to be done for `profmark_progs'. make[2]: Leaving directory `/«PKGBUILDDIR»/profmark' cd profmark; /usr/bin/make profmark_progs make[2]: Entering directory `/«PKGBUILDDIR»/profmark' make[2]: Nothing to be done for `profmark_progs'. make[2]: Leaving directory `/«PKGBUILDDIR»/profmark' mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/bin for file in hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer; do\ cp src/$file /«PKGBUILDDIR»/debian/tmp/usr/bin/;\ done mkdir -p //«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer; do\ cp documentation/man/$file.man /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1/$file.1;\ done make[1]: Leaving directory `/«PKGBUILDDIR»' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/hmmer.substvars dh_installdirs -phmmer dh_installdocs -phmmer ./README dh_installexamples -phmmer dh_installman -phmmer dh_installinfo -phmmer dh_installmenu -phmmer dh_installcron -phmmer dh_installinit -phmmer dh_installdebconf -phmmer dh_installemacsen -phmmer dh_installcatalogs -phmmer dh_installpam -phmmer dh_installlogrotate -phmmer dh_installlogcheck -phmmer dh_installchangelogs -phmmer dh_installudev -phmmer dh_lintian -phmmer dh_bugfiles -phmmer dh_install -phmmer dh_link -phmmer dh_installmime -phmmer dh_installgsettings -phmmer dh_strip -phmmer dh_compress -phmmer dh_fixperms -phmmer dh_makeshlibs -phmmer dh_installdeb -phmmer dh_perl -phmmer dh_shlibdeps -phmmer dh_gencontrol -phmmer dh_md5sums -phmmer dh_builddeb -phmmer dpkg-deb: building package `hmmer' in `../hmmer_3.0-4_armhf.deb'. dpkg-genchanges -B -mbuildd >../hmmer_3.0-4_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build hmmer-3.0 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120511-1621 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ hmmer_3.0-4_armhf.changes: ────────────────────────── Format: 1.8 Date: Tue, 03 Apr 2012 09:53:16 +0200 Source: hmmer Binary: hmmer hmmer-doc Architecture: armhf Version: 3.0-4 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Andreas Tille Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-doc - profile hidden Markov models for protein sequence analysis (docs) Changes: hmmer (3.0-4) unstable; urgency=low . [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream . [ Andreas Tille ] * debian/upstream: Took over additional citation from tasks file * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Fixed Vcs fields * debhelper 8 (control + compat) * debian/docs: removed because empty * debian/copyright: - Rewritten to match DEP5 (verified using `cme fix dpkg-copyright`) - Added Files: easel:* section * debian/rules: Fixed clean target by cleaning up easel/testsuite dir Checksums-Sha1: 991016f52d42ee605736834214d39a9a5585762d 1831342 hmmer_3.0-4_armhf.deb Checksums-Sha256: 0f79fdba99fc6840c6ec4f6d560755b7b400046e5232678ccaf61abf8b601d2f 1831342 hmmer_3.0-4_armhf.deb Files: f52ef7416449487fd270642566c8f256 1831342 science optional hmmer_3.0-4_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ hmmer_3.0-4_armhf.deb ───────────────────── new debian package, version 2.0. size 1831342 bytes: control archive= 1440 bytes. 798 bytes, 19 lines control 1741 bytes, 29 lines md5sums Package: hmmer Version: 3.0-4 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 3548 Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0) Suggests: hmmer-doc (>= 3.0-4) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. drwxr-xr-x root/root 0 2012-05-11 16:20 ./ drwxr-xr-x root/root 0 2012-05-11 16:20 ./usr/ drwxr-xr-x root/root 0 2012-05-11 16:20 ./usr/share/ drwxr-xr-x root/root 0 2012-05-11 16:20 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-11 16:20 ./usr/share/man/man1/ -rw-r--r-- root/root 4339 2012-05-11 16:20 ./usr/share/man/man1/hmmscan.1.gz -rw-r--r-- root/root 4524 2012-05-11 16:20 ./usr/share/man/man1/phmmer.1.gz -rw-r--r-- root/root 1581 2012-05-11 16:20 ./usr/share/man/man1/hmmalign.1.gz -rw-r--r-- root/root 4237 2012-05-11 16:20 ./usr/share/man/man1/hmmsearch.1.gz -rw-r--r-- root/root 928 2012-05-11 16:20 ./usr/share/man/man1/hmmconvert.1.gz -rw-r--r-- root/root 7056 2012-05-11 16:20 ./usr/share/man/man1/jackhmmer.1.gz -rw-r--r-- root/root 3927 2012-05-11 16:20 ./usr/share/man/man1/hmmbuild.1.gz -rw-r--r-- root/root 2065 2012-05-11 16:20 ./usr/share/man/man1/hmmer.1.gz -rw-r--r-- root/root 5202 2012-05-11 16:20 ./usr/share/man/man1/hmmsim.1.gz -rw-r--r-- root/root 887 2012-05-11 16:20 ./usr/share/man/man1/hmmpress.1.gz -rw-r--r-- root/root 1307 2012-05-11 16:20 ./usr/share/man/man1/hmmstat.1.gz -rw-r--r-- root/root 1583 2012-05-11 16:20 ./usr/share/man/man1/hmmemit.1.gz -rw-r--r-- root/root 1322 2012-05-11 16:20 ./usr/share/man/man1/hmmfetch.1.gz drwxr-xr-x root/root 0 2012-05-11 16:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-11 16:20 ./usr/share/doc/hmmer/ -rw-r--r-- root/root 2089 2012-04-03 02:53 ./usr/share/doc/hmmer/changelog.Debian.gz -rw-r--r-- root/root 3390 2012-04-03 02:47 ./usr/share/doc/hmmer/copyright -rw-r--r-- root/root 1145 2010-03-28 07:35 ./usr/share/doc/hmmer/README -rw-r--r-- root/root 491 2010-10-30 01:08 ./usr/share/doc/hmmer/README.Debian drwxr-xr-x root/root 0 2012-05-11 16:20 ./usr/bin/ -rwxr-xr-x root/root 186404 2012-05-11 16:20 ./usr/bin/hmmconvert -rwxr-xr-x root/root 293172 2012-05-11 16:20 ./usr/bin/hmmemit -rwxr-xr-x root/root 367780 2012-05-11 16:20 ./usr/bin/hmmsearch -rwxr-xr-x root/root 317704 2012-05-11 16:20 ./usr/bin/hmmalign -rwxr-xr-x root/root 186256 2012-05-11 16:20 ./usr/bin/hmmstat -rwxr-xr-x root/root 367740 2012-05-11 16:20 ./usr/bin/hmmscan -rwxr-xr-x root/root 190412 2012-05-11 16:20 ./usr/bin/hmmpress -rwxr-xr-x root/root 212340 2012-05-11 16:20 ./usr/bin/hmmsim -rwxr-xr-x root/root 190664 2012-05-11 16:20 ./usr/bin/hmmfetch -rwxr-xr-x root/root 353188 2012-05-11 16:20 ./usr/bin/hmmbuild -rwxr-xr-x root/root 444376 2012-05-11 16:20 ./usr/bin/jackhmmer -rwxr-xr-x root/root 439464 2012-05-11 16:20 ./usr/bin/phmmer ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autotools-dev* bsdmainutils* cdbs* debhelper* file* gettext* gettext-base* groff-base* html2text* intltool-debian* libcroco3* libffi5* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-hmmer-dummy* 0 upgraded, 0 newly installed, 22 to remove and 9 not upgraded. After this operation, 24.7 MB disk space will be freed. (Reading database ... 12127 files and directories currently installed.) Removing sbuild-build-depends-hmmer-dummy ... Removing autotools-dev ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing cdbs ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing html2text ... Purging configuration files for html2text ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 75592 Build-Time: 3776 Distribution: testing Install-Time: 58 Job: hmmer_3.0-4 Package: hmmer Package-Time: 3852 Source-Version: 3.0-4 Space: 75592 Status: successful Version: 3.0-4 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120511-1621 Build needed 01:04:12, 75592k disc space