sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on build03.raspbian.lan ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ffindex 0.9.6.1-1 (armhf) 08 Jul 2012 02:29 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ffindex Version: 0.9.6.1-1 Source Version: 0.9.6.1-1 Distribution: testing Architecture: armhf I: NOTICE: Log filtering will replace 'build/ffindex-_bTo_2/ffindex-0.9.6.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ffindex-_bTo_2' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/testing-armhf-sbuild-27310284-178c-4d23-9f4c-a4cb7850d64b' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Hit http://repo.raspbian.lan testing InRelease Hit http://repo.raspbian.lan testing/main Sources Hit http://repo.raspbian.lan testing/main armhf Packages Ign http://repo.raspbian.lan testing/main Translation-en Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'ffindex' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/ffindex/trunk/ Need to get 38.1 kB of source archives. Get:1 http://repo.raspbian.lan/raspbian/ testing/main ffindex 0.9.6.1-1 (dsc) [2154 B] Get:2 http://repo.raspbian.lan/raspbian/ testing/main ffindex 0.9.6.1-1 (tar) [22.2 kB] Get:3 http://repo.raspbian.lan/raspbian/ testing/main ffindex 0.9.6.1-1 (diff) [13.8 kB] Fetched 38.1 kB in 0s (961 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-pBd4Hd/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10635 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.0.0), help2man Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.0.0), help2man dpkg-deb: building package `sbuild-build-depends-ffindex-dummy' in `/«BUILDDIR»/resolver-UJekJm/apt_archive/sbuild-build-depends-ffindex-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ffindex build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-ffindex-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 22 newly installed, 0 to remove and 4 not upgraded. Need to get 0 B/9554 kB of archives. After this operation, 24.9 MB of additional disk space will be used. Selecting previously unselected package libpcre3:armhf. (Reading database ... 10635 files and directories currently installed.) Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-4_armhf.deb) ... Selecting previously unselected package libffi5:armhf. Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.3-1_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ... Selecting previously unselected package libunistring0:armhf. Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package libgettextpo0:armhf. Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-9_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.2-1_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-9_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package help2man. Unpacking help2man (from .../help2man_1.40.10_armhf.deb) ... Selecting previously unselected package sbuild-build-depends-ffindex-dummy. Unpacking sbuild-build-depends-ffindex-dummy (from .../sbuild-build-depends-ffindex-dummy.deb) ... Setting up libpcre3:armhf (1:8.30-5) ... Setting up libpipeline1:armhf (1.2.1-1) ... Setting up libasprintf0c2:armhf (0.18.1.1-9) ... Setting up libmagic1:armhf (5.11-1) ... Setting up libxml2:armhf (2.8.0+dfsg1-4) ... Setting up libffi5:armhf (3.0.10-3+b3) ... Setting up libglib2.0-0:armhf (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:armhf (0.6.5-1) ... Setting up libunistring0:armhf (0.9.3-5) ... Setting up libgettextpo0:armhf (0.18.1.1-9) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-9) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up help2man (1.40.10) ... Setting up sbuild-build-depends-ffindex-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-2-mx5 armhf (armv7l) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-8+rpi1 gcc-4.6_4.6.3-8+rpi1 libc6-dev_2.13-33 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 linux-libc-dev_3.2.21-1+rpi1 Package versions: apt_0.9.3+rpi1 base-files_6.9 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-8+rpi1 dash_0.5.7-3 debconf_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-8+rpi1 gcc_4:4.6.3-6 gcc-4.4-base_4.4.7-1.1+rpi1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-8+rpi1 gcc-4.6-base_4.6.3-8+rpi1 gcc-4.7-base_4.7.1-2+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 help2man_1.40.10 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.3+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libffi5_3.0.10-3+b3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-2+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-2+rpi1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libncursesw5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.4-3 libstdc++6_4.7.1-2+rpi1 libstdc++6-4.6-dev_4.6.3-8+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.21-1+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12+rpi1 perl-base_5.14.2-12+rpi1 perl-modules_5.14.2-12+rpi1 po-debconf_1.0.16+nmu2 raspbian-archive-keyring_20120528.2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ffindex-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.1 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Jun 27 13:27:37 2012 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ffindex_0.9.6.1-1.dsc dpkg-source: info: extracting ffindex in ffindex-0.9.6.1 dpkg-source: info: unpacking ffindex_0.9.6.1.orig.tar.gz dpkg-source: info: unpacking ffindex_0.9.6.1-1.debian.tar.gz dpkg-source: info: applying Makefile dpkg-source: info: applying hardening dpkg-source: info: applying num_max_entries_bug dpkg-source: info: applying 40000000_bug Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games SCHROOT_CHROOT_NAME=testing-armhf-sbuild SCHROOT_COMMAND=env SCHROOT_GID=108 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=testing-armhf-sbuild-27310284-178c-4d23-9f4c-a4cb7850d64b SCHROOT_UID=106 SCHROOT_USER=buildd SHELL=/bin/sh TERM=xterm USER=buildd dpkg-buildpackage ───────────────── dpkg-buildpackage: source package ffindex dpkg-buildpackage: source version 0.9.6.1-1 dpkg-source --before-build ffindex-0.9.6.1 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel make[1]: Entering directory `/«PKGBUILDDIR»' make -C src -f Makefile distclean make[2]: Entering directory `/«PKGBUILDDIR»/src' rm -f ffindex.o ffutil.o ffindex_build ffindex_build.o ffindex_get ffindex_get.o libffindex.so libffindex.so.0 libffindex.so.0.1.0 ffindex_modify ffindex_modify.o \ libffindex.a ffindex_from_fasta.o ffindex_from_fasta ffindex_apply_mpi.o ffindex_apply.o make[2]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_clean make[1]: Entering directory `/«PKGBUILDDIR»' rm -f ffindex_apply.1 ffindex_build.1 ffindex_from_fasta.1 ffindex_get.1 ffindex_modify.1 dh_clean make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_auto_configure -a -O--parallel dh_auto_build -a -O--parallel make[1]: Entering directory `/«PKGBUILDDIR»' make -C src -f Makefile all make[2]: Entering directory `/«PKGBUILDDIR»/src' gcc -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -c -o ffindex_apply.o ffindex_apply.c gcc -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -c -o ffindex.o ffindex.c ffindex.c: In function 'ffindex_index_parse': ffindex.c:228:5: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' [-Wformat] ffindex.c:228:5: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' [-Wformat] ffindex.c: In function 'ffindex_tree_write': ffindex.c:437:3: warning: ISO C forbids nested functions [-pedantic] gcc -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -c -o ffutil.o ffutil.c gcc -D_FORTIFY_SOURCE=2 -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,defstack -shared -Wl,-soname,libffindex.so.0 -o libffindex.so.0.1.0 ffindex.o ffutil.o -lc /usr/bin/ld: warning: -z defstack ignored. ln -sf libffindex.so.0.1.0 libffindex.so.0 ln -sf libffindex.so.0.1.0 libffindex.so gcc -Wl,-z,relro ffindex_apply.o libffindex.so libffindex.so.0.1.0 ffindex.h -o ffindex_apply ffindex.h: In function 'ffindex_max_index_entries': ffindex.h:46:57: warning: initialization makes pointer from integer without a cast [enabled by default] gcc -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -c -o ffindex_from_fasta.o ffindex_from_fasta.c gcc -D_FORTIFY_SOURCE=2 -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -o ffindex_from_fasta ffindex_from_fasta.o -Wl,-z,relro -L. -lffindex gcc -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -c -o ffindex_get.o ffindex_get.c gcc -D_FORTIFY_SOURCE=2 -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -o ffindex_get ffindex_get.o -Wl,-z,relro -L. -lffindex gcc -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -c -o ffindex_build.o ffindex_build.c gcc -D_FORTIFY_SOURCE=2 -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -o ffindex_build ffindex_build.o -Wl,-z,relro -L. -lffindex gcc -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -c -o ffindex_modify.o ffindex_modify.c gcc -D_FORTIFY_SOURCE=2 -std=c99 -O2 -g -fPIC -Wall -pedantic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -o ffindex_modify ffindex_modify.o -Wl,-z,relro -L. -lffindex ar rcs libffindex.a ffutil.o ffindex.o make[2]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_test -- FFINDEX_MAX_INDEX_ENTRIES=20000 make[2]: Entering directory `/«PKGBUILDDIR»' make -C src -f Makefile check make[3]: Entering directory `/«PKGBUILDDIR»/src' rm -f /tmp/test.data /tmp/test.ffindex LD_LIBRARY_PATH=".:" ./ffindex_build -s /tmp/test.data /tmp/test.ffindex ../test/data ../test/data2 LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test.out a bb fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_modify -u /tmp/test.ffindex b LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test-unlink.out ffindex_get.c:61 ffindex_get key not found in index: b: No such file or directory a fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_build -a -s /tmp/test.data /tmp/test.ffindex ../test/testfile ======== compare results ========= diff /tmp/test.out test.should diff /tmp/test-unlink.out test-unlink.should ======== error handling ========== LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex nonexistquery b foo || echo ffindex_get.c:61 ffindex_get key not found in index: nonexistquery: No such file or directory ffindex_get.c:61 ffindex_get key not found in index: b: No such file or directory fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_get /nonexist/data /tmp/test.ffindex a foo || echo ffindex_get.c:41 ffindex_get: /nonexist/data: No such file or directory LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /nonexist/index a foo || echo ffindex_get.c:42 ffindex_get: /nonexist/index: No such file or directory make[3]: Leaving directory `/«PKGBUILDDIR»/src' make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel dh_installdirs -a -O--parallel dh_auto_install -a -O--parallel make[1]: Entering directory `/«PKGBUILDDIR»' make -C src -f Makefile install make[2]: Entering directory `/«PKGBUILDDIR»/src' mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/bin mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/lib mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/include install ffindex_get /«PKGBUILDDIR»/debian/tmp/usr/bin/ffindex_get install ffindex_build /«PKGBUILDDIR»/debian/tmp/usr/bin/ffindex_build install ffindex_modify /«PKGBUILDDIR»/debian/tmp/usr/bin/ffindex_modify install ffindex_from_fasta /«PKGBUILDDIR»/debian/tmp/usr/bin/ffindex_from_fasta install ffindex_apply /«PKGBUILDDIR»/debian/tmp/usr/bin/ffindex_apply install libffindex.so.0.1.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/libffindex.so.0.1.0 install libffindex.a /«PKGBUILDDIR»/debian/tmp/usr/lib/libffindex.a ln -sf libffindex.so.0.1.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/libffindex.so.0 ln -sf libffindex.so.0.1.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/libffindex.so install ffindex.h /«PKGBUILDDIR»/debian/tmp/usr/include/ffindex.h install ffutil.h /«PKGBUILDDIR»/debian/tmp/usr/include/ffutil.h make[2]: Leaving directory `/«PKGBUILDDIR»/src' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_install -a -O--parallel dh_installdocs -a -O--parallel dh_installchangelogs -a -O--parallel dh_installexamples -a -O--parallel debian/rules override_dh_installman make[1]: Entering directory `/«PKGBUILDDIR»' unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_apply" --version-option="-v" 'debian/tmp/usr/bin/ffindex_apply' -o 'ffindex_apply.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_build" --version-option="-v" 'debian/tmp/usr/bin/ffindex_build' -o 'ffindex_build.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_from_fasta" --version-option="-v" 'debian/tmp/usr/bin/ffindex_from_fasta' -o 'ffindex_from_fasta.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_get" --version-option="-v" 'debian/tmp/usr/bin/ffindex_get' -o 'ffindex_get.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_modify" --version-option="-v" 'debian/tmp/usr/bin/ffindex_modify' -o 'ffindex_modify.1' --include debian/man_notes.nroff dh_installman make[1]: Leaving directory `/«PKGBUILDDIR»' dh_installcatalogs -a -O--parallel dh_installcron -a -O--parallel dh_installdebconf -a -O--parallel dh_installemacsen -a -O--parallel dh_installifupdown -a -O--parallel dh_installinfo -a -O--parallel dh_installinit -a -O--parallel dh_installmenu -a -O--parallel dh_installmime -a -O--parallel dh_installmodules -a -O--parallel dh_installlogcheck -a -O--parallel dh_installlogrotate -a -O--parallel dh_installpam -a -O--parallel dh_installppp -a -O--parallel dh_installudev -a -O--parallel dh_installwm -a -O--parallel dh_installxfonts -a -O--parallel dh_installgsettings -a -O--parallel dh_bugfiles -a -O--parallel dh_ucf -a -O--parallel dh_lintian -a -O--parallel dh_gconf -a -O--parallel dh_icons -a -O--parallel dh_perl -a -O--parallel dh_usrlocal -a -O--parallel dh_link -a -O--parallel dh_compress -a -O--parallel dh_fixperms -a -O--parallel debian/rules override_dh_strip make[1]: Entering directory `/«PKGBUILDDIR»' dh_strip --dbg-package=ffindex-dbg make[1]: Leaving directory `/«PKGBUILDDIR»' dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel dpkg-deb: building package `ffindex' in `../ffindex_0.9.6.1-1_armhf.deb'. dpkg-deb: building package `libffindex0' in `../libffindex0_0.9.6.1-1_armhf.deb'. dpkg-deb: building package `libffindex0-dev' in `../libffindex0-dev_0.9.6.1-1_armhf.deb'. dpkg-deb: building package `ffindex-dbg' in `../ffindex-dbg_0.9.6.1-1_armhf.deb'. dpkg-genchanges -B -mbuildd >../ffindex_0.9.6.1-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ffindex-0.9.6.1 dpkg-buildpackage: binary only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120708-0231 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ ffindex_0.9.6.1-1_armhf.changes: ──────────────────────────────── Format: 1.8 Date: Tue, 26 Jun 2012 11:43:41 +0200 Source: ffindex Binary: ffindex libffindex0 libffindex0-dev ffindex-dbg Architecture: armhf Version: 0.9.6.1-1 Distribution: testing Urgency: low Maintainer: buildd Changed-By: Laszlo Kajan Description: ffindex - simple index/database for huge amounts of small files ffindex-dbg - simple index/database for huge amounts of small files (debug) libffindex0 - library for simple index/database for huge amounts of small files libffindex0-dev - library for simple index/database for huge amounts of small files Changes: ffindex (0.9.6.1-1) unstable; urgency=low . * New upstream release. * Fixed many bugs. Checksums-Sha1: 1e73f7a10889deff79e8cb8994e147db5a16ec1d 24020 ffindex_0.9.6.1-1_armhf.deb f3ee1684473731ff3b079c7020aa4e4b359b8cdd 15410 libffindex0_0.9.6.1-1_armhf.deb 5864c653b20bc26d00e9e8467c1a42031b9b6b26 15842 libffindex0-dev_0.9.6.1-1_armhf.deb 38cd5c347a6f06a2f848db9cdd02e76a3762dabf 37630 ffindex-dbg_0.9.6.1-1_armhf.deb Checksums-Sha256: 54218ce0a7897dd4f56ca48042ed2d489a380be1498cfad4c11ae43e88249a6c 24020 ffindex_0.9.6.1-1_armhf.deb fa43944df23117b0b2be2f2d9c898624fd510636ae75e0401eb5b21eb0316a4c 15410 libffindex0_0.9.6.1-1_armhf.deb 3da4dd66d3d68f24a578c475118cb93397c8a94adbb10dc08f39b2e49cf1d83a 15842 libffindex0-dev_0.9.6.1-1_armhf.deb b435f975c7b7535505dac258817078a8f2920d333c991cbb2f7f04b1ab031eb8 37630 ffindex-dbg_0.9.6.1-1_armhf.deb Files: f04aeca27f12fc0b8ec9bb7315260137 24020 science extra ffindex_0.9.6.1-1_armhf.deb a0a101bafede1ae35c44a34d7acbbc40 15410 libs extra libffindex0_0.9.6.1-1_armhf.deb e6812650c822ec704eadc5fc3d2801fe 15842 libdevel extra libffindex0-dev_0.9.6.1-1_armhf.deb dc8db6c1a00786af20168247ebfc270e 37630 debug extra ffindex-dbg_0.9.6.1-1_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ ffindex_0.9.6.1-1_armhf.deb ─────────────────────────── new debian package, version 2.0. size 24020 bytes: control archive= 1044 bytes. 777 bytes, 17 lines control 853 bytes, 13 lines md5sums Package: ffindex Version: 0.9.6.1-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 107 Depends: libffindex0 (= 0.9.6.1-1), libc6 (>= 2.13-28) Section: science Priority: extra Homepage: http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/ Description: simple index/database for huge amounts of small files FFindex is a very simple index/database for huge amounts of small files. The files are stored concatenated in one big data file, separated by '\0'. A second file contains a plain text index, giving name, offset and length of the small files. The lookup is currently done with a binary search on an array made from the index file. . This package provides the executables. drwxr-xr-x root/root 0 2012-07-08 02:31 ./ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/bin/ -rwxr-xr-x root/root 9784 2012-07-08 02:31 ./usr/bin/ffindex_modify -rwxr-xr-x root/root 9796 2012-07-08 02:31 ./usr/bin/ffindex_from_fasta -rwxr-xr-x root/root 9820 2012-07-08 02:31 ./usr/bin/ffindex_build -rwxr-xr-x root/root 9808 2012-07-08 02:31 ./usr/bin/ffindex_apply -rwxr-xr-x root/root 5656 2012-07-08 02:31 ./usr/bin/ffindex_get drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/man/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/man/man1/ -rw-r--r-- root/root 603 2012-07-08 02:31 ./usr/share/man/man1/ffindex_modify.1.gz -rw-r--r-- root/root 484 2012-07-08 02:31 ./usr/share/man/man1/ffindex_from_fasta.1.gz -rw-r--r-- root/root 427 2012-07-08 02:31 ./usr/share/man/man1/ffindex_get.1.gz -rw-r--r-- root/root 622 2012-07-08 02:31 ./usr/share/man/man1/ffindex_build.1.gz -rw-r--r-- root/root 435 2012-07-08 02:31 ./usr/share/man/man1/ffindex_apply.1.gz drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/ffindex/ -rw-r--r-- root/root 1735 2012-06-21 22:25 ./usr/share/doc/ffindex/README -rw-r--r-- root/root 277 2012-06-27 02:52 ./usr/share/doc/ffindex/changelog.Debian.gz -rw-r--r-- root/root 22610 2012-06-27 01:35 ./usr/share/doc/ffindex/copyright libffindex0_0.9.6.1-1_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 15410 bytes: control archive= 960 bytes. 781 bytes, 18 lines control 286 bytes, 4 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 25 bytes, 1 lines shlibs Package: libffindex0 Source: ffindex Version: 0.9.6.1-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 73 Depends: libc6 (>= 2.13-28) Section: libs Priority: extra Homepage: http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/ Description: library for simple index/database for huge amounts of small files FFindex is a very simple index/database for huge amounts of small files. The files are stored concatenated in one big data file, separated by '\0'. A second file contains a plain text index, giving name, offset and length of the small files. The lookup is currently done with a binary search on an array made from the index file. . This package provides the shared library. drwxr-xr-x root/root 0 2012-07-08 02:31 ./ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/libffindex0/ -rw-r--r-- root/root 277 2012-06-27 02:52 ./usr/share/doc/libffindex0/changelog.Debian.gz -rw-r--r-- root/root 22610 2012-06-27 01:35 ./usr/share/doc/libffindex0/copyright drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 69 2012-06-27 01:35 ./usr/share/lintian/overrides/libffindex0 drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/lib/ -rw-r--r-- root/root 13860 2012-07-08 02:31 ./usr/lib/libffindex.so.0.1.0 lrwxrwxrwx root/root 0 2012-07-08 02:31 ./usr/lib/libffindex.so.0 -> libffindex.so.0.1.0 libffindex0-dev_0.9.6.1-1_armhf.deb ─────────────────────────────────── new debian package, version 2.0. size 15842 bytes: control archive= 857 bytes. 899 bytes, 20 lines control 324 bytes, 5 lines md5sums Package: libffindex0-dev Source: ffindex Version: 0.9.6.1-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 71 Depends: libffindex0 (= 0.9.6.1-1) Provides: libffindex-dev Section: libdevel Priority: extra Homepage: http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/ Description: library for simple index/database for huge amounts of small files (development) FFindex is a very simple index/database for huge amounts of small files. The files are stored concatenated in one big data file, separated by '\0'. A second file contains a plain text index, giving name, offset and length of the small files. The lookup is currently done with a binary search on an array made from the index file. . This package contains the header files and documentation needed to develop applications with libffindex. drwxr-xr-x root/root 0 2012-07-08 02:31 ./ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/include/ -rw-r--r-- root/root 827 2012-07-08 02:31 ./usr/include/ffutil.h -rw-r--r-- root/root 3618 2012-07-08 02:31 ./usr/include/ffindex.h drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/libffindex0-dev/ -rw-r--r-- root/root 277 2012-06-27 02:52 ./usr/share/doc/libffindex0-dev/changelog.Debian.gz -rw-r--r-- root/root 22610 2012-06-27 01:35 ./usr/share/doc/libffindex0-dev/copyright drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/lib/ -rw-r--r-- root/root 11848 2012-07-08 02:31 ./usr/lib/libffindex.a lrwxrwxrwx root/root 0 2012-07-08 02:31 ./usr/lib/libffindex.so -> libffindex.so.0.1.0 ffindex-dbg_0.9.6.1-1_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 37630 bytes: control archive= 934 bytes. 844 bytes, 18 lines control 580 bytes, 8 lines md5sums Package: ffindex-dbg Source: ffindex Version: 0.9.6.1-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 148 Depends: ffindex (= 0.9.6.1-1), libffindex0 (= 0.9.6.1-1) Section: debug Priority: extra Homepage: http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/ Description: simple index/database for huge amounts of small files (debug) FFindex is a very simple index/database for huge amounts of small files. The files are stored concatenated in one big data file, separated by '\0'. A second file contains a plain text index, giving name, offset and length of the small files. The lookup is currently done with a binary search on an array made from the index file. . This package provides the detached debug symbols for ffindex and libffindex. drwxr-xr-x root/root 0 2012-07-08 02:31 ./ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/share/doc/ffindex-dbg/ -rw-r--r-- root/root 277 2012-06-27 02:52 ./usr/share/doc/ffindex-dbg/changelog.Debian.gz -rw-r--r-- root/root 22610 2012-06-27 01:35 ./usr/share/doc/ffindex-dbg/copyright drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/lib/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/lib/debug/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/lib/debug/usr/ drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/lib/debug/usr/bin/ -rw-r--r-- root/root 10804 2012-07-08 02:31 ./usr/lib/debug/usr/bin/ffindex_modify -rw-r--r-- root/root 12013 2012-07-08 02:31 ./usr/lib/debug/usr/bin/ffindex_from_fasta -rw-r--r-- root/root 14442 2012-07-08 02:31 ./usr/lib/debug/usr/bin/ffindex_build -rw-r--r-- root/root 11828 2012-07-08 02:31 ./usr/lib/debug/usr/bin/ffindex_apply -rw-r--r-- root/root 8785 2012-07-08 02:31 ./usr/lib/debug/usr/bin/ffindex_get drwxr-xr-x root/root 0 2012-07-08 02:31 ./usr/lib/debug/usr/lib/ -rw-r--r-- root/root 25286 2012-07-08 02:31 ./usr/lib/debug/usr/lib/libffindex.so.0.1.0 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* help2man* html2text* intltool-debian* libasprintf0c2* libcroco3* libffi5* libgettextpo0* libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-core-dummy* sbuild-build-depends-ffindex-dummy* 0 upgraded, 0 newly installed, 23 to remove and 4 not upgraded. After this operation, 24.9 MB disk space will be freed. (Reading database ... 12074 files and directories currently installed.) Removing sbuild-build-depends-ffindex-dummy ... Removing debhelper ... Removing man-db ... Purging configuration files for man-db ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing file ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing gettext-base ... Removing groff-base ... Purging configuration files for groff-base ... Removing help2man ... Removing html2text ... Purging configuration files for html2text ... Removing libasprintf0c2:armhf ... Removing libcroco3:armhf ... Purging configuration files for libcroco3:armhf ... Removing libglib2.0-0:armhf ... Purging configuration files for libglib2.0-0:armhf ... Removing libffi5:armhf ... Purging configuration files for libffi5:armhf ... Removing libgettextpo0:armhf ... Removing libmagic1:armhf ... Purging configuration files for libmagic1:armhf ... Removing libpcre3:armhf ... Purging configuration files for libpcre3:armhf ... Removing libpipeline1:armhf ... Purging configuration files for libpipeline1:armhf ... Removing libunistring0:armhf ... Purging configuration files for libunistring0:armhf ... Removing libxml2:armhf ... Purging configuration files for libxml2:armhf ... Removing sbuild-build-depends-core-dummy ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: armhf Build-Space: 1676 Build-Time: 64 Distribution: testing Install-Time: 68 Job: ffindex_0.9.6.1-1 Package: ffindex Package-Time: 151 Source-Version: 0.9.6.1-1 Space: 1676 Status: successful Version: 0.9.6.1-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120708-0231 Build needed 00:02:31, 1676k disc space