32 #include <QTextStream>
47 QRegularExpression(
"^(\\d*\\.?\\d+)([^\\d^\\.^-]+)(-?\\d*\\.?\\d*[e-]?\\d*)");
54 int size =
log10(num);
57 base.append(QString().setNum(num));
65 *p_out << (char)(
log10(num) + 97) << num;
83 int intPart =
static_cast<int>(value);
85 double decimalPart = value - intPart;
106 if(decimal_places < 0)
109 return ceil((value * pow(10, decimal_places)) - 0.49) /
110 pow(10, decimal_places);
118 if(
sizeof(
int *) == 4)
120 test_decimal = 100000000;
122 return (floor(input * test_decimal));
129 std::string env_backup = setlocale(LC_ALL,
"");
137 setlocale(LC_ALL,
"C");
140 QByteArray byte_array = text.toUtf8();
141 std::string stdText =
"";
143 for(
char c : byte_array)
149 setlocale(LC_ALL, env_backup.c_str());
159 QFile file(file_name);
161 if(file.open(QFile::WriteOnly | QFile::Truncate))
164 QTextStream out(&file);
182 QFile file(file_name);
184 if(file.open(QFile::WriteOnly | QFile::Append))
187 QTextStream out(&file);
204 qDebug() <<
" " << spectrum_native_id;
205 QStringList native_id_list = spectrum_native_id.split(
"=");
206 if(native_id_list.size() < 2)
209 QObject::tr(
"scan number not found in mzML native id %1")
210 .arg(spectrum_native_id));
228 return native_id_list.back().toULong();
237 return QString(
"%1").arg(
238 (quintptr)pointer, QT_POINTER_SIZE * 2, 16, QChar(
'0'));
259 double valueSum = std::abs(value1 + value2);
263 double valueDiff = std::abs(value1 - value2);
267 double epsilon = std::numeric_limits<double>::epsilon();
271 double scaleFactor = epsilon * valueSum * decimalPlaces;
279 bool res = valueDiff < scaleFactor
281 || valueDiff < std::numeric_limits<double>::min();
293 return std::nextafter(value, value + 1);
299 const QString &msg, std::chrono::system_clock::time_point chrono_time)
304 tt = std::chrono::system_clock::to_time_t(chrono_time);
307 QString(
"%1 - %2\n").arg(msg).arg(QString::fromLatin1(ctime(&tt)));
316 std::chrono::system_clock::time_point chrono_start,
317 std::chrono::system_clock::time_point chrono_finish)
321 "%1 %2 min = %3 s = %4 ms = %5 "
324 .arg(std::chrono::duration_cast<std::chrono::minutes>(chrono_finish -
327 .arg(std::chrono::duration_cast<std::chrono::seconds>(chrono_finish -
330 .arg(std::chrono::duration_cast<std::chrono::milliseconds>(chrono_finish -
333 .arg(std::chrono::duration_cast<std::chrono::microseconds>(chrono_finish -
343 std::size_t &error_count)
346 QStringList string_list =
347 text.split(QRegularExpression(
"[\\s]+"), QString::SkipEmptyParts);
351 std::vector<double> double_vector;
353 for(
int iter = 0; iter < string_list.size(); ++iter)
355 QString current_string = string_list.at(iter);
359 double current_double = current_string.toDouble(&ok);
361 if(!current_double && !ok)
367 double_vector.push_back(current_double);
370 return double_vector;
374 std::vector<std::size_t>
376 std::size_t &error_count)
380 QStringList string_list =
381 text.split(QRegularExpression(
"[\\s]+"), QString::SkipEmptyParts);
386 std::vector<std::size_t> sizet_vector;
388 for(
int iter = 0; iter < string_list.size(); ++iter)
390 QString current_string = string_list.at(iter);
394 std::size_t current_sizet = current_string.toUInt(&ok);
396 if(!current_sizet && !ok)
402 sizet_vector.push_back(current_sizet);
static std::size_t extractScanNumberFromMzmlNativeId(const QString &spectrum_native_id)
static QString chronoTimePointDebugString(const QString &msg, std::chrono::system_clock::time_point chrono_time=std::chrono::system_clock::now())
static QString pointerToString(const void *const pointer)
static pappso_double roundToDecimals(pappso_double value, int decimal_places)
static bool almostEqual(double value1, double value2, int decimalPlaces=10)
static std::vector< double > splitMzStringToDoubleVectorWithSpaces(const QString &text, std::size_t &error_count)
static double nearestGreater(double value)
static std::string toUtf8StandardString(const QString &text)
static bool appendToFile(const QString &text, const QString &file_name)
static QString chronoIntervalDebugString(const QString &msg, std::chrono::system_clock::time_point chrono_start, std::chrono::system_clock::time_point chrono_finish=std::chrono::system_clock::now())
static bool writeToFile(const QString &text, const QString &file_name)
static std::vector< std::size_t > splitSizetStringToSizetVectorWithSpaces(const QString &text, std::size_t &error_count)
static QRegularExpression xyMassDataFormatRegExp
static const QString getLexicalOrderedString(unsigned int num)
static void writeLexicalOrderedString(QTextStream *p_out, unsigned int num)
static int zeroDecimalsInValue(pappso_double value)
0.11 would return 0 (no empty decimal) 2.001 would return 2 1000.0001254 would return 3
static QRegularExpression endOfLineRegExp
Regular expression that tracks the end of line in text files.
static long long int roundToDecimal32bitsAsLongLongInt(pappso::pappso_double input)
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
double pappso_double
A type definition for doubles.
This header contains all the type re-definitions and all the global variables definitions used in the...