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void | vg::algorithms::packed_depths (const Packer &packer, const string &path_name, size_t min_coverage, ostream &out_stream) |
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pair< double, double > | vg::algorithms::packed_depth_of_bin (const Packer &packer, step_handle_t start_step, step_handle_t end_plus_one_step, size_t min_coverage, bool include_deletions) |
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vector< tuple< size_t, size_t, double, double > > | vg::algorithms::binned_packed_depth (const Packer &packer, const string &path_name, size_t bin_size, size_t min_coverage, bool include_deletions) |
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unordered_map< string, map< size_t, pair< float, float > > > | vg::algorithms::binned_packed_depth_index (const Packer &packer, const vector< string > &path_names, size_t bin_size, size_t min_coverage, bool include_deletions, bool std_err) |
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const pair< float, float > & | vg::algorithms::get_depth_from_index (const BinnedDepthIndex &depth_index, const string &path_name, size_t offset) |
| Query index created above. More...
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pair< float, float > | vg::algorithms::get_depth_from_index (const BinnedDepthIndex &depth_index, const string &path_name, size_t start_offset, size_t end_offset) |
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pair< double, double > | vg::algorithms::sample_gam_depth (const HandleGraph &graph, istream &gam_stream, size_t max_nodes, size_t random_seed, size_t min_coverage, size_t min_mapq) |
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pair< double, double > | vg::algorithms::sample_gam_depth (const HandleGraph &graph, const vector< Alignment > &alignments, size_t max_nodes, size_t random_seed, size_t min_coverage, size_t min_mapq) |
| As above, but read a vector instead of a stream. More...
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