Upstream provides binary files without sources for:

* tests/pcs109_5k_prim.sam 
* tests/pcs109_5k.sam
* tests/pcs109_5k_spliced.sam

These have been converted to corresponding text (.sam) files with command:
* samtools view -h -o <out>.sam <in>.bam 

And the corresponding *.sam files are added to: debian/missing-sources

They can be generated back with the following commands:
*	cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam
*	cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam
*	cat debian/missing-sources/pcs109_5k_spliced.sam | samtools view -Sb - > tests/pcs109_5k_spliced.bam
*	samtools index tests/pcs109_5k_prim.bam tests/pcs109_5k_prim.bam.bai
*	samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai
*	samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai

These commands are also being run in debian/rules since these binaries are needed for autopkgtests.

 -- Nilesh Patra <npatra974@gmail.com>  Mon, 03 Aug 2020 21:49:28 +0530

