/* ----------------------------------------------------------------------
   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
   http://lammps.sandia.gov, Sandia National Laboratories
   Steve Plimpton, sjplimp@sandia.gov

   Copyright (2003) Sandia Corporation.  Under the terms of Contract
   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
   certain rights in this software.  This software is distributed under
   the GNU General Public License.

   See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */

/* ----------------------------------------------------------------------
   Contributing author: Ray Shan (SNL)
------------------------------------------------------------------------- */

#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include "pair_lj_charmm_coul_charmm_kokkos.h"
#include "kokkos.h"
#include "atom_kokkos.h"
#include "comm.h"
#include "force.h"
#include "neighbor.h"
#include "neigh_list.h"
#include "neigh_request.h"
#include "update.h"
#include "integrate.h"
#include "respa.h"
#include "math_const.h"
#include "memory_kokkos.h"
#include "error.h"
#include "atom_masks.h"

using namespace LAMMPS_NS;
using namespace MathConst;

#define KOKKOS_CUDA_MAX_THREADS 256
#define KOKKOS_CUDA_MIN_BLOCKS 8


#define EWALD_F   1.12837917
#define EWALD_P   0.3275911
#define A1        0.254829592
#define A2       -0.284496736
#define A3        1.421413741
#define A4       -1.453152027
#define A5        1.061405429

/* ---------------------------------------------------------------------- */

template<class DeviceType>
PairLJCharmmCoulCharmmKokkos<DeviceType>::PairLJCharmmCoulCharmmKokkos(LAMMPS *lmp):PairLJCharmmCoulCharmm(lmp)
{
  respa_enable = 0;

  atomKK = (AtomKokkos *) atom;
  execution_space = ExecutionSpaceFromDevice<DeviceType>::space;
  datamask_read = X_MASK | F_MASK | TYPE_MASK | Q_MASK | ENERGY_MASK | VIRIAL_MASK;
  datamask_modify = F_MASK | ENERGY_MASK | VIRIAL_MASK;
  cutsq = NULL;
  cut_ljsq = 0.0;
  cut_coulsq = 0.0;

}

/* ---------------------------------------------------------------------- */

template<class DeviceType>
PairLJCharmmCoulCharmmKokkos<DeviceType>::~PairLJCharmmCoulCharmmKokkos()
{
  if (!copymode) {
    memoryKK->destroy_kokkos(k_eatom,eatom);
    memoryKK->destroy_kokkos(k_vatom,vatom);
    k_cutsq = DAT::tdual_ffloat_2d();
    k_cut_ljsq = DAT::tdual_ffloat_2d();
    k_cut_coulsq = DAT::tdual_ffloat_2d();
    memory->sfree(cutsq);
    //memory->sfree(cut_ljsq);
    //memory->sfree(cut_coulsq);
    eatom = NULL;
    vatom = NULL;
    cutsq = NULL;
    cut_ljsq = 0.0;
    cut_coulsq = 0.0;
  }
}

/* ---------------------------------------------------------------------- */

template<class DeviceType>
void PairLJCharmmCoulCharmmKokkos<DeviceType>::cleanup_copy() {
  // WHY needed: this prevents parent copy from deallocating any arrays
  allocated = 0;
  cutsq = NULL;
  cut_ljsq = 0.0;
  eatom = NULL;
  vatom = NULL;
  ftable = NULL;
}

/* ---------------------------------------------------------------------- */

template<class DeviceType>
void PairLJCharmmCoulCharmmKokkos<DeviceType>::compute(int eflag_in, int vflag_in)
{
  eflag = eflag_in;
  vflag = vflag_in;

  if (neighflag == FULL) no_virial_fdotr_compute = 1;

  if (eflag || vflag) ev_setup(eflag,vflag,0);
  else evflag = vflag_fdotr = 0;

  // reallocate per-atom arrays if necessary

  if (eflag_atom) {
    memoryKK->destroy_kokkos(k_eatom,eatom);
    memoryKK->create_kokkos(k_eatom,eatom,maxeatom,"pair:eatom");
    d_eatom = k_eatom.view<DeviceType>();
  }
  if (vflag_atom) {
    memoryKK->destroy_kokkos(k_vatom,vatom);
    memoryKK->create_kokkos(k_vatom,vatom,maxvatom,6,"pair:vatom");
    d_vatom = k_vatom.view<DeviceType>();
  }

  atomKK->sync(execution_space,datamask_read);
  k_cutsq.template sync<DeviceType>();
  k_cut_ljsq.template sync<DeviceType>();
  k_cut_coulsq.template sync<DeviceType>();
  k_params.template sync<DeviceType>();
  if (eflag || vflag) atomKK->modified(execution_space,datamask_modify);
  else atomKK->modified(execution_space,F_MASK);

  x = atomKK->k_x.view<DeviceType>();
  c_x = atomKK->k_x.view<DeviceType>();
  f = atomKK->k_f.view<DeviceType>();
  q = atomKK->k_q.view<DeviceType>();
  type = atomKK->k_type.view<DeviceType>();
  nlocal = atom->nlocal;
  nall = atom->nlocal + atom->nghost;
  special_lj[0] = force->special_lj[0];
  special_lj[1] = force->special_lj[1];
  special_lj[2] = force->special_lj[2];
  special_lj[3] = force->special_lj[3];
  special_coul[0] = force->special_coul[0];
  special_coul[1] = force->special_coul[1];
  special_coul[2] = force->special_coul[2];
  special_coul[3] = force->special_coul[3];
  qqrd2e = force->qqrd2e;
  newton_pair = force->newton_pair;

  // loop over neighbors of my atoms

  copymode = 1;

  EV_FLOAT ev;
  if(ncoultablebits)
    ev = pair_compute<PairLJCharmmCoulCharmmKokkos<DeviceType>,CoulLongTable<1> >
      (this,(NeighListKokkos<DeviceType>*)list);
  else
    ev = pair_compute<PairLJCharmmCoulCharmmKokkos<DeviceType>,CoulLongTable<0> >
      (this,(NeighListKokkos<DeviceType>*)list);


  if (eflag) {
    eng_vdwl += ev.evdwl;
    eng_coul += ev.ecoul;
  }
  if (vflag_global) {
    virial[0] += ev.v[0];
    virial[1] += ev.v[1];
    virial[2] += ev.v[2];
    virial[3] += ev.v[3];
    virial[4] += ev.v[4];
    virial[5] += ev.v[5];
  }

  if (eflag_atom) {
    k_eatom.template modify<DeviceType>();
    k_eatom.template sync<LMPHostType>();
  }

  if (vflag_atom) {
    k_vatom.template modify<DeviceType>();
    k_vatom.template sync<LMPHostType>();
  }

  if (vflag_fdotr) pair_virial_fdotr_compute(this);

  copymode = 0;
}

/* ----------------------------------------------------------------------
   compute LJ CHARMM pair force between atoms i and j
   ---------------------------------------------------------------------- */
template<class DeviceType>
template<bool STACKPARAMS, class Specialisation>
KOKKOS_INLINE_FUNCTION
F_FLOAT PairLJCharmmCoulCharmmKokkos<DeviceType>::
compute_fpair(const F_FLOAT& rsq, const int& i, const int&j,
              const int& itype, const int& jtype) const {
  const F_FLOAT r2inv = 1.0/rsq;
  const F_FLOAT r6inv = r2inv*r2inv*r2inv;
  F_FLOAT forcelj, switch1, switch2, englj;

  forcelj = r6inv *
    ((STACKPARAMS?m_params[itype][jtype].lj1:params(itype,jtype).lj1)*r6inv -
     (STACKPARAMS?m_params[itype][jtype].lj2:params(itype,jtype).lj2));

  if (rsq > cut_lj_innersq) {
    switch1 = (cut_ljsq-rsq) * (cut_ljsq-rsq) *
              (cut_ljsq + 2.0*rsq - 3.0*cut_lj_innersq) / denom_lj;
    switch2 = 12.0*rsq * (cut_ljsq-rsq) * (rsq-cut_lj_innersq) / denom_lj;
    englj = r6inv *
            ((STACKPARAMS?m_params[itype][jtype].lj3:params(itype,jtype).lj3)*r6inv -
             (STACKPARAMS?m_params[itype][jtype].lj4:params(itype,jtype).lj4));
    forcelj = forcelj*switch1 + englj*switch2;
  }

  return forcelj*r2inv;
}

/* ----------------------------------------------------------------------
   compute LJ CHARMM pair potential energy between atoms i and j
   ---------------------------------------------------------------------- */
template<class DeviceType>
template<bool STACKPARAMS, class Specialisation>
KOKKOS_INLINE_FUNCTION
F_FLOAT PairLJCharmmCoulCharmmKokkos<DeviceType>::
compute_evdwl(const F_FLOAT& rsq, const int& i, const int&j,
              const int& itype, const int& jtype) const {
  const F_FLOAT r2inv = 1.0/rsq;
  const F_FLOAT r6inv = r2inv*r2inv*r2inv;
  F_FLOAT englj, switch1;

  englj = r6inv *
    ((STACKPARAMS?m_params[itype][jtype].lj3:params(itype,jtype).lj3)*r6inv -
     (STACKPARAMS?m_params[itype][jtype].lj4:params(itype,jtype).lj4));

  if (rsq > cut_lj_innersq) {
    switch1 = (cut_ljsq-rsq) * (cut_ljsq-rsq) *
      (cut_ljsq + 2.0*rsq - 3.0*cut_lj_innersq) / denom_lj;
    englj *= switch1;
  }

  return englj;

}

/* ----------------------------------------------------------------------
   compute coulomb pair force between atoms i and j
   ---------------------------------------------------------------------- */
template<class DeviceType>
template<bool STACKPARAMS,  class Specialisation>
KOKKOS_INLINE_FUNCTION
F_FLOAT PairLJCharmmCoulCharmmKokkos<DeviceType>::
compute_fcoul(const F_FLOAT& rsq, const int& i, const int&j,
              const int& itype, const int& jtype, const F_FLOAT& factor_coul, const F_FLOAT& qtmp) const {

  const F_FLOAT r2inv = 1.0/rsq;
  const F_FLOAT rinv = sqrt(r2inv);
  F_FLOAT forcecoul, switch1;

  forcecoul = qqrd2e*qtmp*q(j) *rinv;

  if (rsq > cut_coul_innersq) {
    switch1 = (cut_coulsq-rsq) * (cut_coulsq-rsq) *
              (cut_coulsq + 2.0*rsq - 3.0*cut_coul_innersq) / denom_coul;
    forcecoul *= switch1;
  }

  return forcecoul * r2inv * factor_coul;

}

/* ----------------------------------------------------------------------
   compute coulomb pair potential energy between atoms i and j
   ---------------------------------------------------------------------- */
template<class DeviceType>
template<bool STACKPARAMS, class Specialisation>
KOKKOS_INLINE_FUNCTION
F_FLOAT PairLJCharmmCoulCharmmKokkos<DeviceType>::
compute_ecoul(const F_FLOAT& rsq, const int& i, const int&j,
              const int& itype, const int& jtype, const F_FLOAT& factor_coul, const F_FLOAT& qtmp) const {

  const F_FLOAT r2inv = 1.0/rsq;
  const F_FLOAT rinv = sqrt(r2inv);
  F_FLOAT ecoul, switch1;

  ecoul = qqrd2e * qtmp * q(j) * rinv;
  if (rsq > cut_coul_innersq) {
    switch1 = (cut_coulsq-rsq) * (cut_coulsq-rsq) *
              (cut_coulsq + 2.0*rsq - 3.0*cut_coul_innersq) /
              denom_coul;
    ecoul *= switch1;
  }

  return ecoul * factor_coul;

}

/* ----------------------------------------------------------------------
   allocate all arrays
------------------------------------------------------------------------- */

template<class DeviceType>
void PairLJCharmmCoulCharmmKokkos<DeviceType>::allocate()
{
  PairLJCharmmCoulCharmm::allocate();

  int n = atom->ntypes;

  memory->destroy(cutsq);
  memoryKK->create_kokkos(k_cutsq,cutsq,n+1,n+1,"pair:cutsq");
  d_cutsq = k_cutsq.template view<DeviceType>();

  //memory->destroy(cut_ljsq);
  memoryKK->create_kokkos(k_cut_ljsq,n+1,n+1,"pair:cut_ljsq");
  d_cut_ljsq = k_cut_ljsq.template view<DeviceType>();

  memoryKK->create_kokkos(k_cut_coulsq,n+1,n+1,"pair:cut_coulsq");
  d_cut_coulsq = k_cut_coulsq.template view<DeviceType>();

  k_params = Kokkos::DualView<params_lj_coul**,Kokkos::LayoutRight,DeviceType>("PairLJCharmmCoulCharmm::params",n+1,n+1);
  params = k_params.template view<DeviceType>();
}

template<class DeviceType>
void PairLJCharmmCoulCharmmKokkos<DeviceType>::init_tables(double cut_coul, double *cut_respa)
{
  Pair::init_tables(cut_coul,cut_respa);

  typedef typename ArrayTypes<DeviceType>::t_ffloat_1d table_type;
  typedef typename ArrayTypes<LMPHostType>::t_ffloat_1d host_table_type;

  int ntable = 1;
  for (int i = 0; i < ncoultablebits; i++) ntable *= 2;


  // Copy rtable and drtable
  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);
  for(int i = 0; i < ntable; i++) {
    h_table(i) = rtable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_rtable = d_table;
  }

  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);
  for(int i = 0; i < ntable; i++) {
    h_table(i) = drtable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_drtable = d_table;
  }

  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);

  // Copy ftable and dftable
  for(int i = 0; i < ntable; i++) {
    h_table(i) = ftable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_ftable = d_table;
  }

  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);

  for(int i = 0; i < ntable; i++) {
    h_table(i) = dftable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_dftable = d_table;
  }

  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);

  // Copy ctable and dctable
  for(int i = 0; i < ntable; i++) {
    h_table(i) = ctable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_ctable = d_table;
  }

  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);

  for(int i = 0; i < ntable; i++) {
    h_table(i) = dctable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_dctable = d_table;
  }

  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);

  // Copy etable and detable
  for(int i = 0; i < ntable; i++) {
    h_table(i) = etable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_etable = d_table;
  }

  {
  host_table_type h_table("HostTable",ntable);
  table_type d_table("DeviceTable",ntable);

  for(int i = 0; i < ntable; i++) {
    h_table(i) = detable[i];
  }
  Kokkos::deep_copy(d_table,h_table);
  d_detable = d_table;
  }
}


/* ----------------------------------------------------------------------
   global settings
------------------------------------------------------------------------- */

template<class DeviceType>
void PairLJCharmmCoulCharmmKokkos<DeviceType>::settings(int narg, char **arg)
{
  if (narg > 2) error->all(FLERR,"Illegal pair_style command");

  PairLJCharmmCoulCharmm::settings(narg,arg);
}

/* ----------------------------------------------------------------------
   init specific to this pair style
------------------------------------------------------------------------- */

template<class DeviceType>
void PairLJCharmmCoulCharmmKokkos<DeviceType>::init_style()
{
  PairLJCharmmCoulCharmm::init_style();

  // error if rRESPA with inner levels

  if (update->whichflag == 1 && strstr(update->integrate_style,"respa")) {
    int respa = 0;
    if (((Respa *) update->integrate)->level_inner >= 0) respa = 1;
    if (((Respa *) update->integrate)->level_middle >= 0) respa = 2;
    if (respa)
      error->all(FLERR,"Cannot use Kokkos pair style with rRESPA inner/middle");
  }

  // irequest = neigh request made by parent class

  neighflag = lmp->kokkos->neighflag;
  int irequest = neighbor->nrequest - 1;

  neighbor->requests[irequest]->
    kokkos_host = Kokkos::Impl::is_same<DeviceType,LMPHostType>::value &&
    !Kokkos::Impl::is_same<DeviceType,LMPDeviceType>::value;
  neighbor->requests[irequest]->
    kokkos_device = Kokkos::Impl::is_same<DeviceType,LMPDeviceType>::value;

  if (neighflag == FULL) {
    neighbor->requests[irequest]->full = 1;
    neighbor->requests[irequest]->half = 0;
  } else if (neighflag == HALF || neighflag == HALFTHREAD) {
    neighbor->requests[irequest]->full = 0;
    neighbor->requests[irequest]->half = 1;
  } else {
    error->all(FLERR,"Cannot use chosen neighbor list style with lj/charmm/coul/charmm/kk");
  }
}

/* ----------------------------------------------------------------------
   init for one type pair i,j and corresponding j,i
------------------------------------------------------------------------- */

template<class DeviceType>
double PairLJCharmmCoulCharmmKokkos<DeviceType>::init_one(int i, int j)
{
  double cutone = PairLJCharmmCoulCharmm::init_one(i,j);
  double cut_ljsqm = cut_ljsq;
  double cut_coulsqm = cut_coulsq;

  k_params.h_view(i,j).lj1 = lj1[i][j];
  k_params.h_view(i,j).lj2 = lj2[i][j];
  k_params.h_view(i,j).lj3 = lj3[i][j];
  k_params.h_view(i,j).lj4 = lj4[i][j];
  //k_params.h_view(i,j).offset = offset[i][j];
  k_params.h_view(i,j).cut_ljsq = cut_ljsqm;
  k_params.h_view(i,j).cut_coulsq = cut_coulsqm;

  k_params.h_view(j,i) = k_params.h_view(i,j);
  if(i<MAX_TYPES_STACKPARAMS+1 && j<MAX_TYPES_STACKPARAMS+1) {
    m_params[i][j] = m_params[j][i] = k_params.h_view(i,j);
    m_cutsq[j][i] = m_cutsq[i][j] = cutone*cutone;
    m_cut_ljsq[j][i] = m_cut_ljsq[i][j] = cut_ljsqm;
    m_cut_coulsq[j][i] = m_cut_coulsq[i][j] = cut_coulsqm;
  }

  k_cutsq.h_view(i,j) = k_cutsq.h_view(j,i) = cutone*cutone;
  k_cutsq.template modify<LMPHostType>();
  k_cut_ljsq.h_view(i,j) = k_cut_ljsq.h_view(j,i) = cut_ljsqm;
  k_cut_ljsq.template modify<LMPHostType>();
  k_cut_coulsq.h_view(i,j) = k_cut_coulsq.h_view(j,i) = cut_coulsqm;
  k_cut_coulsq.template modify<LMPHostType>();
  k_params.template modify<LMPHostType>();

  return cutone;
}



namespace LAMMPS_NS {
template class PairLJCharmmCoulCharmmKokkos<LMPDeviceType>;
#ifdef KOKKOS_HAVE_CUDA
template class PairLJCharmmCoulCharmmKokkos<LMPHostType>;
#endif
}
