# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:187424-220640 (33217bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	194467	197188	0	-	.	g1
chr20	AUGUSTUS	transcript	194467	197188	.	-	.	g1.t1
chr20	AUGUSTUS	tts	194467	194467	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	194467	194861	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	stop_codon	194754	194756	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	194754	194861	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	195400	195486	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	195400	195486	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	195573	195707	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	195573	195707	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	196134	196190	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	196134	196286	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	start_codon	196188	196190	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	196950	197188	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	tss	197188	197188	.	-	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MRTLDLIDEAYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRAAIYDKYKEFAIPEEEAEWVGL
# TLEEAIEKQRLLEEKDPVPLFKIYVAELIQRLQQQALSEPVVVQKRASGQ]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 4/4
#      W:   4 
# CDS introns: 4/4
#      E:   4 
# 5'UTR exons and introns: 2/2
#      W:   2 
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 79
#      E:   4 
#      W:  75 
# incompatible hint groups: 24
#      W:  24 
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	199312	205720	0	-	.	g2
chr20	AUGUSTUS	transcript	199312	205720	.	-	.	g2.t1
chr20	AUGUSTUS	stop_codon	199312	199314	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	199312	199608	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	199312	199608	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	199932	200048	0.98	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	199932	200048	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	201331	201477	0.98	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	201331	201477	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	201537	201715	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	201537	201715	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	202070	202206	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	202070	202206	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	202446	202569	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	202446	202569	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	202657	202747	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	202657	202747	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	203436	203755	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	203436	203755	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	203844	204112	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	203844	204112	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	204307	204434	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	204307	204434	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	204648	204855	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	204648	204855	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	204940	205117	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	204940	205117	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	205666	205720	0.54	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	205666	205720	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	205718	205720	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAGQASGLGPSRTRGLPLEVGLVSEHFSQAPQRLSFYSWYGSARLFRFRVPPDTVLLRWLLQVSREGGTACTDAEITV
# HFRSGAPPVINPLGTSFPDDTSVQPSFQVRVPLSAAPLSNASVNVSHPAPGDWFVAAHLPPSSQKIELKGLAPTCAYVFQPDLLVTRVVEISVMEPDV
# PLPHTLVSHPSYLKVFVPDYTRELLLELRDCVSSGSLGCPVRLTVGPVTLPSNFQKVLTCTSAPWPCRLLLPSPPWDRWLQVTAESLVGPLGTVTFSA
# VAALTACRPQSVTIQPLLQSSQNQSFNASTGLPSLSPDHQYLGRSGSVDRSPFCLTNYPVMREDMDVVSVHFQLLDRVSVRVCPNTPSMMRLRLNTGM
# DSGGSLTISLRANKTEMRNETVIVACVNAASPFLGFNSSLNCTTAFFQGYPLSLSAWSLRANLIIPYPETDNWYLSLQLMCPENAEECEQAVVHVETT
# LYLVPCLNDCGPYGQCLLLRRHSYLYAGCSCKAGWRGWSCTDNSTAQTVAQQRAAALLLTLSNLMFLAPITVSVQRFFLVEASVYAYTMFFSTFYHAC
# DQPGEAVLCILNYDTLQYCDFLGSGAAIWVTILCMARLKAVLKYVLFLLGTLVIAMSLQLDRRGIWNMLGPCLFAFVIMASMWTYRCGHRRQCYPTSW
# QRWAFYLLPGISMASVGVAIYTSMMTSDNYYYTHSIWHVLLAGSAALLLPPPDEHAEPWACSQKFPCHYQICKNDREELYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 96
# CDS exons: 13/13
#      W:  13 
# CDS introns: 11/12
#      E:  11 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 12
#      E:  11 
#     RM:   1 
# incompatible hint groups: 278
#      W: 278 
# end gene g2
###
