# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:187424-220640 (33217bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	194754	198926	0	-	.	g1
chr20	AUGUSTUS	transcript	194754	198926	.	-	.	g1.t1
chr20	AUGUSTUS	stop_codon	194754	194756	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	194754	194861	0.99	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	195400	195486	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	195573	195707	0.83	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	196134	196286	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	198666	198926	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	start_codon	198924	198926	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MEPRNPEPTTGAGSCELRDPCSWPLCGPDASLPEAWRIPLCCCGHHRDWRPRSPPKLMGAGDAGFRPALPFFLALEPW
# VPEKSLLGLLSKRLKKVWKPQLFERELYSEILDKKFTVTVTMRTLDLIDEAYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRA
# AIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQRLQQQALSEPVVVQKRASGQ]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/3
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	199312	205304	0	-	.	g2
chr20	AUGUSTUS	transcript	199312	205304	.	-	.	g2.t1
chr20	AUGUSTUS	stop_codon	199312	199314	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	199312	199608	0.02	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	199932	200048	0.98	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	201331	201477	0.01	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	201537	201715	0.9	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	202070	202206	0.91	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	202446	202569	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	202657	202747	0.99	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	203436	203755	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	203844	204112	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	204307	204434	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	204648	204855	0.97	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	204940	205117	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	205226	205304	0.77	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	205302	205304	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAEDWLRGQRVAVTFTKVRVGVPRAAEVGLVSEHFSQAPQRLSFYSWYGSARLFRFRVPPDTVLLRWLLQVSREGGTA
# CTDAEITVHFRSGAPPVINPLGTSFPDDTSVQPSFQVRVPLSAAPLSNASVNVSHPAPGDWFVAAHLPPSSQKIELKGLAPTCAYVFQPDLLVTRVVE
# ISVMEPDVPLPHTLVSHPSYLKVFVPDYTRELLLELRDCVSSGSLGCPVRLTVGPVTLPSNFQKVLTCTSAPWPCRLLLPSPPWDRWLQVTAESLVGP
# LGTVTFSAVAALTACRPQSVTIQPLLQSSQNQSFNASTGLPSLSPDHQYLGRSGSVDRSPFCLTNYPVMREDMDVVSVHFQLLDRVSVRVCPNTPSMM
# RLRLNTGMDSGGSLTISLRANKTEMRNETVIVACVNAASPFLGFNSSLNCTTAFFQGYPLSLSAWSLRANLIIPYPETDNWYLSLQLMCPENAEECEQ
# AVVHVETTLYLVPCLNDCGPYGQCLLLRRHSYLYAGCSCKAGWRGWSCTDNSTAQTVAQQRAAALLLTLSNLMFLAPITVSVQRFFLVEASVYAYTMF
# FSTFYHACDQPGEAVLCILNYDTLQYCDFLGSGAAIWVTILCMARLKAVLKYVLFLLGTLVIAMSLQLDRRGIWNMLGPCLFAFVIMASMWTYRCGHR
# RQCYPTSWQRWAFYLLPGISMASVGVAIYTSMMTSDNYYYTHSIWHVLLAGSAALLLPPPDEHAEPWACSQKFPCHYQICKNDREELYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/13
# CDS introns: 0/12
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 0
# end gene g2
###
