# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:165999-214433 (48435bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	168094	169136	0	-	.	g1
chr20	AUGUSTUS	transcript	168094	169136	.	-	.	g1.t1
chr20	AUGUSTUS	stop_codon	168094	168096	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	168094	168103	0.01	-	1	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	168246	168332	0.04	-	1	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	168679	169136	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	start_codon	169134	169136	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MIPGRARWLTPVIPDSAGLCWTLSPQHQLAAHFFFFFPQDGVSLLLLRLECNGVMSAYCNLCLPVSPVSASLVAGITG
# ACHHAWLLFVFLVETGFRHVGQAGLELLISSGPPTSASQSAGIIGVSHCAQSILYVYAPVSRRGLQTYFFSSSVISELMHMLRFRSSLSNADVVCSSI
# PCSYQRIH]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/3
# CDS introns: 0/2
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 2
#     RM:   2 
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	174841	176089	0	-	.	g2
chr20	AUGUSTUS	transcript	174841	176089	.	-	.	g2.t1
chr20	AUGUSTUS	stop_codon	174841	174843	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	174841	174880	0.04	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	175212	176089	0.11	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	176087	176089	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MNIQEQGFPLDLGASFTEDAPRPPVPGEEGELVSTDPRPASYSFCSGKGVGIKAETSTATPRRSDLDLGYEPEGSASP
# TPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQL
# IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESPKVCSDQSSGSGTGKGISGYLPTLNEDEEWKCDQDMDEDDGRDAAPPGRLPQKLLLE
# TAAPRASSSRRYSEGREFRIWIYPVDMVLCA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g2
###
# start gene g3
chr20	AUGUSTUS	gene	185895	187929	0	-	.	g3
chr20	AUGUSTUS	transcript	185895	187929	.	-	.	g3.t1
chr20	AUGUSTUS	stop_codon	185895	185897	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	185895	185939	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	187879	187929	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	start_codon	187927	187929	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MADSGTVGREQAHGARQRRCLALLPRLILNR]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 3
#     RM:   3 
# end gene g3
###
# start gene g4
chr20	AUGUSTUS	gene	194754	205304	0	-	.	g4
chr20	AUGUSTUS	transcript	194754	205304	.	-	.	g4.t1
chr20	AUGUSTUS	stop_codon	194754	194756	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	194754	194861	0.98	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	195400	195486	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	195573	195707	0.86	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	196134	196286	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	196950	197106	0.8	-	1	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	198938	199127	0.3	-	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	199350	199608	0.53	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	199932	200048	0.99	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	201331	201456	0.89	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	201537	201715	0.92	-	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	202070	202206	0.92	-	1	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	202446	202569	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	202657	202747	0.97	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	203436	203755	0.97	-	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	203844	204112	1	-	1	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	204307	204434	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	204648	204855	1	-	1	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	204940	205117	0.99	-	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	205226	205304	0.75	-	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	start_codon	205302	205304	.	-	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MAEDWLRGQRVAVTFTKVRVGVPRAAEVGLVSEHFSQAPQRLSFYSWYGSARLFRFRVPPDTVLLRWLLQVSREGGTA
# CTDAEITVHFRSGAPPVINPLGTSFPDDTSVQPSFQVRVPLSAAPLSNASVNVSHPAPGDWFVAAHLPPSSQKIELKGLAPTCAYVFQPDLLVTRVVE
# ISVMEPDVPLPHTLVSHPSYLKVFVPDYTRELLLELRDCVSSGSLGCPVRLTVGPVTLPSNFQKVLTCTSAPWPCRLLLPSPPWDRWLQVTAESLVGP
# LGTVTFSAVAALTACRPQSVTIQPLLQSSQNQSFNASTGLPSLSPDHQYLGRSGSVDRSPFCLTNYPVMREDMDVVSVHFQLLDRVSVRVCPNTPSMM
# RLRLNTGMDSGGSLTISLRANKTEMRNETVIVACVNAASPFLGFNSSLNCTTAFFQGYPLSLSAWSLRANLIIPYPETDNWYLSLQLMCPENAEECEQ
# AVVHVETTLYLVPCLNDCGPYGQCLLLRRHSYLYAGCSCKAGWRGWSCTDNSTAQTVAQQRAAALLLTLSNLMFLAPITVSVQRFFLVEASVYAYTMF
# FSTPGEAVLCILNYDTLQYCDFLGSGAAIWVTILCMARLKAVLKYVLFLLGTLVIAMSLQLDRRGIWNMLGPCLFAFVIMASMWTYRCGHRRQCYPTS
# WQRWAFYLLPGISMASVGVAIYTSMMTSDNYYYTHSIWHVLLAGSAALLLPPPDEHAEPWACSQKFPCHYQISACWLLRSLCRSQLLSAVAPGAWAWL
# PGDHRCLCEDGAVCSTGLRVARDGVKDSLWSCSLVRLWPHGVKFKINPKNGQRERVEDVPIPIYFPPESQRGLWGGEGWILGQRYANDDKLSKRLKKV
# WKPQLFERELYSEILDKKFTVTVTMRTLDLIDEAYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRAAIYDKYKEFAIPEEEAE
# WVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQRLQQQALSEPVVVQKRASGQ]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/19
# CDS introns: 0/18
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 0
# end gene g4
###
