# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:149013-201000 (51988bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	150673	165471	0	-	.	g1
chr16	AUGUSTUS	transcript	150673	165471	.	-	.	g1.t1
chr16	AUGUSTUS	stop_codon	150673	150675	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	150673	150823	0.02	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	151169	151263	0.26	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	153131	153344	0.01	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	153935	154021	0.37	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	159185	160143	0.92	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	165406	165471	0.99	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	start_codon	165469	165471	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MGPDRAAPLREPGPGSRHHRARDRLIHFGAVSTDVLGCSAHCSLTQSPKMNIQEQGFPLDLGASFTEDAPRPPVPGEE
# GELVSTDPRPASYSFCSGKGVGIKGETSTATPRRSDLDLGYEPEGSASPTPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKL
# EPCDSNEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESPKVCSDQS
# SGSGTGKGISGYLPTLNEDEEWKCDQDMDEDDGRDAAPPGRLPQKLLLETAAPRVSSSRRYSEGREFSRSSPAVGLLRSSTATGIQFPCGTPECGSLA
# GQCGCGQRVDNRHVHSRSNMVACLGLLVPGAAQRTGGSFRGGQPALAVQVPAGVREEPSDLLISLLTVFLCHRFELTHTLRFCSSLSNADVICSSVPC
# SYRSKDPGPCPELNAGLCGLQPRPTGFLCDPLKHLLANGLSSWLSWLGGQVAG]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/6
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 18
#     RM:  18 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	180712	183255	0	-	.	g2
chr16	AUGUSTUS	transcript	180712	183255	.	-	.	g2.t1
chr16	AUGUSTUS	stop_codon	180712	180714	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	180712	180819	0.98	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	181365	181451	0.99	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	181538	181672	0.97	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	182105	182257	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	182968	183255	0.64	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	start_codon	183253	183255	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MPLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQRG
# LWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQL
# HPEDPERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQQALSEPAVVQKRASGQ]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 0
# end gene g2
###
# start gene g3
chr16	AUGUSTUS	gene	185024	190783	0	-	.	g3
chr16	AUGUSTUS	transcript	185024	190783	.	-	.	g3.t1
chr16	AUGUSTUS	stop_codon	185024	185026	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	185024	185320	1	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	185648	185764	0.99	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	187042	187188	0.08	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	187258	187436	0.24	-	2	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	187793	187929	0.98	-	1	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	188170	188293	1	-	2	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	188382	188472	0.96	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	189173	189492	0.97	-	2	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	189581	189849	0.78	-	1	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	190074	190201	0.92	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	190415	190622	1	-	1	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	190755	190783	0.76	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	start_codon	190781	190783	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MLCFYAGSCRHFRSGAPPVINPLGTSFPDDTAVQPSFQVGVPLSTTPRSNASVNVSHPAPGDWFVAAHLPPSSQKIEL
# KGLAPTCAYVFQPELLVTRVVEISIMEPDVPLPQTLLSHPSYLKVFVPDYTRELLLELRDCVSNGSLGCPVRLTVGPVTLPSNFQKVLTCTGAPWPCR
# LLLPSPPWDRWLQVTAESLVGPLGTVAFSAVAALTACRPRSVTIQPLLQSSQNQSFNASSGLLSPSPDHQDLGRSGRVDRSPFCLTNYPVTREDMDVV
# SVHFQPLDRVSVRVCSDTPSVMRLRLNTGMDSGGSLTISLRANKTEMRNETVVVACVNAASPFLGFNTSLNCTTAFFQGYPLSLSAWSRRANLIIPYP
# ETDNWYLSLQLMCPENAEDCEQAVVHVETTLYLVPCLNDCGPYGQCLLLRRHSYLYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLMFLA
# PIAVSVRRFFLVEASVYAYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGAAIWVTILCMARLKTVLKYVLFLLGTLVIAMSLQLDRRGMWNM
# LGPCLFAFVIMASMWAYRCGHRRQCYPTSWQRWAFYLLPGVSMASVGIAIYTSMMTSDNYYYTHSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCH
# YQICKNDREELYAVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/12
# CDS introns: 0/11
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 1
#     RM:   1 
# end gene g3
###
# start gene g4
chr16	AUGUSTUS	gene	191083	192375	0	+	.	g4
chr16	AUGUSTUS	transcript	191083	192375	.	+	.	g4.t1
chr16	AUGUSTUS	start_codon	191083	191085	.	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	191083	191607	0.8	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	192343	192375	0.07	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	stop_codon	192373	192375	.	+	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MAYIPPSWHLGLFTAAASLQQLPNKPQGTSAAIATLTAIATRTAIPTRTAIATLTAIATLTAIATRTAIPTRTAIPTH
# TAIATRTAIATRTAIATRTAIATLTAIPTRTAIATLTAIATRTAIATHTAIPTRTAIATHTAIATRTAIATLTAIPTRTATRTPSNLRRLHSPWPTQR
# HQKKRYTCQ]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g4
###
# start gene g5
chr16	AUGUSTUS	gene	192540	194858	0	-	.	g5
chr16	AUGUSTUS	transcript	192540	194858	.	-	.	g5.t1
chr16	AUGUSTUS	stop_codon	192540	192542	.	-	0	transcript_id "g5.t1"; gene_id "g5";
chr16	AUGUSTUS	CDS	192540	192604	.	-	2	transcript_id "g5.t1"; gene_id "g5";
chr16	AUGUSTUS	CDS	194738	194858	0.26	-	0	transcript_id "g5.t1"; gene_id "g5";
chr16	AUGUSTUS	start_codon	194856	194858	.	-	0	transcript_id "g5.t1"; gene_id "g5";
# protein sequence = [MGRAGTGTGGEAVAAVVAGPLLLLLLARPPPASAGYSGKSEAGFLRDTVVLGGCPASAPST]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 1
#     RM:   1 
# end gene g5
###
# start gene g6
chr16	AUGUSTUS	gene	199800	200270	0	+	.	g6
chr16	AUGUSTUS	transcript	199800	200270	.	+	.	g6.t1
chr16	AUGUSTUS	start_codon	199800	199802	.	+	0	transcript_id "g6.t1"; gene_id "g6";
chr16	AUGUSTUS	CDS	199800	200270	0.99	+	0	transcript_id "g6.t1"; gene_id "g6";
chr16	AUGUSTUS	stop_codon	200268	200270	.	+	0	transcript_id "g6.t1"; gene_id "g6";
# protein sequence = [MALKAKKEAPASPEAEAKAKALKAKKAALKGVHSHIKKKTRTSLTFQRPKTLRRRRRPEYPWKSTPRRNKLGHYAVIK
# FPLTTESAVKRTEENNTLLFTVDVKANKHQIKQAVKKLYDGDVAEVTTLIPPDGEKKACVRLAPDYDALDVANKIGII]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/1
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g6
###
