# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'mm10' -----
#
#----- prediction on sequence range chr17:146502-178393 (31892bp) -----
#
# start gene g1
chr17	AUGUSTUS	gene	148094	175195	.	+	.	g1
chr17	AUGUSTUS	transcript	148094	175195	.	+	.	g1.t1
chr17	AUGUSTUS	start_codon	148094	148096	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	148094	148154	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	148094	148154	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	150094	150188	.	+	2	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	150094	150188	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	161346	161456	0.95	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	161346	161456	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	162278	162421	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	162278	162421	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	170737	170913	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	170737	170913	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	172609	172697	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	172609	172697	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	175024	175195	.	+	1	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	175024	175195	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	stop_codon	175193	175195	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [CPPRRRCGPCWTSSWARLGTEMKPDRGSSLQMTVSARVTFWTAAPMTSLLGRLWITXSPSLQSVIGEPNLPKSGWLKH
# RRKSVQKFRLRQKRYMNXMKKXENFLLKLSSXELKEMWTNPRRFLWKWRKFVQRKKKQRKNIEIPCLHPVFNSKNSVFARFVQLTLVSMTMTVGLQTT
# SGASYTWGSFRSGRSLISXGKLWLKNRKKEIRIDXGEERRESEKSAWAGGHAPGIVDGGGLGLPPESGGSFPVPDPEIDTGAIAAVPGATAGVTAGLP
# GTGVQNTSN]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 77.8
# CDS exons: 7/7
#      W:   7 
# CDS introns: 0/2
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 26
#     RM:  26 
# incompatible hint groups: 1141
#     RM:  22 
#      W:1119 
# end gene g1
###
