# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:24001-76000 (52000bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	33686	42435	0	-	.	g1
chr16	AUGUSTUS	transcript	33686	42435	.	-	.	g1.t1
chr16	AUGUSTUS	exon	33686	33784	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	40279	41957	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	stop_codon	41734	41736	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	41734	41957	0.62	-	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	42316	42376	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	42316	42435	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	start_codon	42374	42376	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	tss	42435	42435	.	-	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDAGWQNSSEAPWEEATPEGAGWASKTWPALVLYHCKGNRKLSFSNVGFCQVLFQLPPSP
# QHTGEPLCSQRLTVVR]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 85.7
# CDS exons: 2/2
#      M:   1 
#      W:   2 
# CDS introns: 1/2
#      E:   1 
#      M:   1 
# 5'UTR exons and introns: 1/1
#      W:   1 
# 3'UTR exons and introns: 2/2
#      W:   2 
# hint groups fully obeyed: 203
#      E:   1 
#      M:   2 
#     RM:  13 
#      W: 187 
# incompatible hint groups: 4
#      E:   2 
#      M:   1 
#      W:   1 
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	47816	75590	0	+	.	g2
chr16	AUGUSTUS	transcript	47816	75590	.	+	.	g2.t1
chr16	AUGUSTUS	tss	47816	47816	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	47816	47894	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	62586	62691	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	67418	67718	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	start_codon	67451	67453	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	67451	67718	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	72520	72636	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	72520	72636	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	73006	73197	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	73006	73197	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	74421	74551	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	74421	74551	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	75130	75262	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	75130	75262	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	75461	75590	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	75461	75590	.	+	.	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCLFVVFVVSFVIPCPDRPAS
# QRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSAC
# ILVGRPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGHLYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAH
# YILFPCASSLCGCSVKGLYEKVTGSGGPFKSDPHWESMLNATTRRMLSH]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 6/6
#      M:   4 
#      W:   6 
# CDS introns: 7/7
#      E:   7 
#      M:   5 
# 5'UTR exons and introns: 3/3
#      W:   3 
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 100
#      E:   7 
#      M:   9 
#     RM:  43 
#      W:  41 
# incompatible hint groups: 89
#      E:   2 
#      W:  87 
# end gene g2
###
