# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
#----- prediction on sequence range chr25:133368-156091 (22724bp) -----
#
# start gene g1
chr25	AUGUSTUS	gene	137871	139927	0	-	.	g1
chr25	AUGUSTUS	transcript	137871	139927	.	-	.	g1.t1
chr25	AUGUSTUS	stop_codon	137871	137873	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	137871	137978	0.57	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	138329	138415	0.76	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	138505	138639	0.07	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	138939	139091	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	139640	139927	0.2	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	start_codon	139925	139927	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MPLHKVPVGLWKRLRLREGIYSRLPAHYLRSLEEARTPTPVHFRPHGAKFKINPKNGQRERVEDVPIPVHYPPESQLG
# LWGGEGWLKGHRYVNNDKFSKRVKKVWKPQLFQRELYSEILDTRFTVTVTMRTLDLIDEAYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQL
# HPDDPERRAAIYDKYKAFVIPEAEAEWVGLTLDEAVEKQRLLEEKDPVPLFKVYVEELVEQLQQQALSEPAVVQKRANRT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 1
#     RM:   1 
# end gene g1
###
# start gene g2
chr25	AUGUSTUS	gene	141602	150344	0	-	.	g2
chr25	AUGUSTUS	transcript	141602	150344	.	-	.	g2.t1
chr25	AUGUSTUS	stop_codon	141602	141604	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	141602	141898	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	142251	142367	0.97	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	143120	143266	0.15	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	143335	143513	0.91	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	143911	144047	0.99	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	144442	144565	0.92	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	144646	144736	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	145128	145447	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	145525	145793	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	145960	146087	0.96	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	146444	146636	0.9	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	146719	146896	0.19	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	150230	150344	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	start_codon	150342	150344	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MRGAGTGTGGAAVAVAMSLLLLLLSRSPPAAAGDGRKSDSRLVSEQFSQAPQKLAFYNWYGSARLFHFRVPPDTVLLH
# WLLQVTRGSGPTCNNVETTVYFRYGAPPVINPLGTSFANNTSVQPSFLLRMLQDNASVNVSYPAPGDWFVAAHLPPSSHKIEVKDFIPTCAYIFQPDM
# LVVRVVEMSILEPDVPLPLVLLSQPSYLKVFVPKHTQELRLELQGCVSNGSLGCPVHLTVGSATLPGNFQKVLTCSDPTTACRLLLPSPPWERWLQVT
# AKSLAGPRVLVTFSAVAALTACRPWTANLQRLLQSSPNQSSNASTGPPPLSPNTQDLDQSGEAGSGAFCFRSFPILREDMDVVSVRFRPLDRASVLVQ
# SDMPSVMKLHLNTGMDSGGSLSISVSVNQTVIASNTSVVACVTAGSPFLSFNTSLNCTTAFFQGYPLSLSASSPTANLSIPYPETDNWYLSLQVLCPE
# RPEECMQPSVLVETTLYLVPCLNDCGPYGQCLLLRRHGYLYAGCSCRAGWRGWSCTDNSTAQTLAQQKVATLLLTLSNLMFLAPIAISVHRCLLVEAS
# VYAYTMFFSTFYHACDQPGDAVLCILNYDTLQYCDFLGSGVSIWVTVLCMARLKASLKYVLFILGALVFAMSLQLDRRAAWNTTGPCLFAIVVMVTMW
# VYRCGRRRHCYPPSWQRWVFYLLPGLSMAALALTIYVSMMTSENYYYTHSIWHMLLAGSAAFLLPPREQHAEPWACAQKLTCHYEICKNHRDELYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/13
# CDS introns: 0/12
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 1
#     RM:   1 
# end gene g2
###
