# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:24440-84431 (59992bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	35057	45360	0	-	.	g1
chr20	AUGUSTUS	transcript	35057	45360	.	-	.	g1.t1
chr20	AUGUSTUS	CDS	35057	35155	0.73	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	43271	43365	0.9	-	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	45300	45360	0.75	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	start_codon	45358	45360	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/3
# CDS introns: 0/3
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 15
#     RM:  15 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	72897	84431	0	+	.	g2
chr20	AUGUSTUS	transcript	72897	84431	.	+	.	g2.t1
chr20	AUGUSTUS	start_codon	72897	72899	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	72897	73164	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	80846	80929	0.53	+	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	81009	81125	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	81500	81691	0.99	+	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	82873	83003	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	83478	83610	0.92	+	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	83805	83934	0.86	+	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	84326	84431	0.76	+	1	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MLDHQDLEAEVHPLKNEERKSQENLGNPSKNEDKLKSTPPQSRLSRCRTVAFFLSLFLCLFVVFVVSFVIPCPDRPAS
# QRMWRIDYNAAGRTLLIRVRKKPPSSLGDLTGAGSTEQRIIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFNRSCVDEGFSSPCAFAAAVSGANGSTL
# WERPVAQDVALVECAVPQPRGSEAPSACILVGRPGSFIAVDSFTGETLWNHSSSFSRNASILSPLLQVPDVDSDGAPDLLVFTQEQEEVSGHLYSGST
# GHQIGLRGGLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKVTGRDGPFKNDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNTGADVLL
# VGSEGFVLLDGQELT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/8
# CDS introns: 0/7
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 10
#     RM:  10 
# incompatible hint groups: 0
# end gene g2
###
