# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:99001-151000 (52000bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	99390	100255	0	+	.	g1
chr16	AUGUSTUS	transcript	99390	100255	.	+	.	g1.t1
chr16	AUGUSTUS	CDS	99390	99510	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	99390	99510	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	99591	99772	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	99591	99772	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	99872	99982	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	99872	99982	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	100106	100150	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	100106	100255	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	stop_codon	100148	100150	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	tts	100255	100255	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [PYLLSQEIPPDWDQRPVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDIIIAELDATAN
# ELDAFAVHGFPTLKYFPAGPGRKVIEYKSTRDLETFSKFLDNGGVLPTEEPPEEPAAPFPEPPANSTMGSKEEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 88.9
# CDS exons: 4/4
#      M:   4 
#      W:   4 
# CDS introns: 3/4
#      E:   3 
#      M:   3 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 17
#      E:   3 
#      M:   7 
#      W:   7 
# incompatible hint groups: 35
#      W:  35 
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	100472	130332	0	-	.	g2
chr16	AUGUSTUS	transcript	100472	130332	.	-	.	g2.t1
chr16	AUGUSTUS	tts	100472	100472	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	100472	101285	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	stop_codon	101159	101161	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	101159	101285	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	102477	102644	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	102477	102644	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	106525	106755	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	106525	106755	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	110093	110263	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	110093	110263	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	110759	111288	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	110759	111288	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	117341	117478	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	117341	117478	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	123010	123106	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	123010	123106	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	127580	127720	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	127580	127720	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	130181	130332	0.01	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	130181	130332	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	start_codon	130330	130332	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAPCSEALPSTATGCPQLAVLAHLPRHPMSPESKVLGCLPPSHLVKGPFLVYGSWREPVNPYYVNAGYALAPATSAND
# SEQQSLSSDADTLSLTDSSVDGIPPYRIRKQHRREMQESVQVNGRVPLPHIPRTYRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRM
# EEEGEDGDPSSGPPGPCHKLPPAPAWHHFPPRCVDMGCAGLRDAHEENPESILDEHVQRVLRTPGRQSPGPGHRSPDSGHVAKMPVALGGAASGHGKH
# VPKSGAKLDAAGLHHHRHVHHHVHHSTARPKEQVEAEATRRAQSSFAWGLEPHSHGARSRGYSESVGAAPNASDGLAHSGKVGVACKRNAKKAESGKS
# ASTEVPGASEDAEKNQKIMQWIIEGEKEISRHRRTGHGSSGTRKPQPHENSRPLSLEHPWAGPQLRTSVQPSHLFIQDPTMPPHPAPNPLTQLEEARR
# RLEEEEKRASRAPSKQRTRSQRKVGGGSAQPCDSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVREDEAV
# LPVFEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 88.9
# CDS exons: 8/9
#      M:   8 
#      W:   8 
# CDS introns: 7/8
#      E:   7 
#      M:   7 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 108
#      E:   7 
#      M:  15 
#     RM:   7 
#      W:  79 
# incompatible hint groups: 1040
#      E:   3 
#      M:   3 
#      W:1034 
# end gene g2
###
