# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
#----- prediction on sequence range chr25:15652-64869 (49218bp) -----
#
# start gene g1
chr25	AUGUSTUS	gene	22489	33610	0	-	.	g1
chr25	AUGUSTUS	transcript	22489	33610	.	-	.	g1.t1
chr25	AUGUSTUS	CDS	22489	22613	0.92	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	22489	22613	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	24872	24970	0.8	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	24872	24970	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	31588	31682	0.65	-	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	31588	31682	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	33550	33610	0.61	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	33550	33610	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	start_codon	33608	33610	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELDNTPAALRPADSIREGLGRVIALHSGMMCGCGKRAEAVKLCP]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/4
# CDS introns: 0/3
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 7
#     RM:   7 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr25	AUGUSTUS	gene	58422	64851	0	+	.	g2
chr25	AUGUSTUS	transcript	58422	64851	.	+	.	g2.t1
chr25	AUGUSTUS	start_codon	58422	58424	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	58422	58686	0.35	+	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	58422	58686	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	62383	62502	0.91	+	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	62383	62502	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	62697	62888	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	62697	62888	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	63568	63698	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	63568	63698	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	63892	64024	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	63892	64024	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	64168	64297	0.97	+	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	64168	64297	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	64599	64851	0.63	+	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	64599	64851	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	stop_codon	64849	64851	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MTDGKDLEAEIHPLKSENRKVPENAGALAGKEPRGTPAPQTRLSHCRTAAFFLSLFACLLVVFVVSFIIPCPDRPALQ
# GVWRIDYNAAVAYDFLAAEDVNKDKIQDILFLYKNTNSSRGNSSFSCADEGFSCPCTFVAAVSGASGSVLWERPVAQDRAFVECGILQPRGSAAPSAC
# VVLGRPGSLVAVDTLTGKTLWSQPSSFGGNASVLSPLLRVPDLDADGAPDLLVLIQEENQVNGSIYSGGTGQQVSPPDSLGVDGTSGSILHVTRAGAH
# YVLIPCGTALCSRSVKGLYEKVSRRDSPLKSDPLWEDMLSAASHRLVVHSSGAIRYLMNVPGKAGDDLLLVSTEAYMLLDGQDLTPRWTFGTTQVLRY
# GVLLQGAGPPSLSPCGDLGTTPLPVTWCHPAGGGR]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/7
# CDS introns: 0/6
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 8
#     RM:   8 
# incompatible hint groups: 0
# end gene g2
###
