# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rn6' -----
#
#----- prediction on sequence range chr10:67331-99944 (32614bp) -----
#
# start gene g1
chr10	AUGUSTUS	gene	68941	98370	.	+	.	g1
chr10	AUGUSTUS	transcript	68941	98370	.	+	.	g1.t1
chr10	AUGUSTUS	start_codon	68941	68943	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	68941	69001	0.9	+	0	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	68941	69001	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	70925	71019	0.86	+	2	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	70925	71019	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	74706	74804	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	74706	74804	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	83972	84082	0.97	+	0	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	83972	84082	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	85220	85363	0.56	+	0	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	85220	85363	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	91728	91904	0.92	+	0	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	91728	91904	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	94778	94866	0.03	+	0	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	94778	94866	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	96090	96119	0.03	+	1	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	96090	96119	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	96724	96891	.	+	1	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	96724	96891	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	CDS	98229	98370	0.01	+	1	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	exon	98229	98370	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr10	AUGUSTUS	stop_codon	98368	98370	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRSKKKEAEEEYRNS
# MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLGRRSGSRTRDRRRSRSRD
# RRRRRSRSTSRERRKFSRSRSRDRYRRHRSRSRSHSRGHRRASRDRSTKYKFSRERSLREESWEYRRNERGPTDWRLENSNGKTASRRSEEKEAGEI]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 104
#     RM: 104 
# incompatible hint groups: 1
#     RM:   1 
# end gene g1
###
