# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
chr25	SAMPLING	intron	133368	136014	-5.52	-	.	Name=rintron;postProb=0.04;avgBaseProb=0.241
chr25	SAMPLING	intron	136147	137306	-4.11	-	.	Name=rintron;postProb=0.09;avgBaseProb=0.457
chr25	SAMPLING	intron	133368	133595	-5.27	-	.	Name=rintron;postProb=0.03;avgBaseProb=0.16
chr25	SAMPLING	intron	133670	137113	-5.4	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.312
chr25	SAMPLING	intron	137202	137306	-2.69	-	.	Name=rintron;postProb=0.2;avgBaseProb=0.495
chr25	SAMPLING	intron	137407	137874	-2.26	-	.	Name=rintron;postProb=0.39;avgBaseProb=0.428
chr25	SAMPLING	intron	137979	138073	0.192	-	.	Name=rintron;postProb=0.33;avgBaseProb=1
chr25	SAMPLING	intron	138155	138328	-0.543	-	.	Name=rintron;postProb=0.23;avgBaseProb=1
chr25	SAMPLING	intron	138416	138504	2.69	-	.	Name=rintron;postProb=0.76;avgBaseProb=1
chr25	SAMPLING	intron	133368	137113	-5.31	-	.	Name=rintron;postProb=0.05;avgBaseProb=0.299
chr25	SAMPLING	intron	137979	138504	-2.03	-	.	Name=rintron;postProb=0.15;avgBaseProb=0.824
chr25	SAMPLING	intron	136147	136345	-3.97	-	.	Name=rintron;postProb=0.04;avgBaseProb=0.45
chr25	SAMPLING	intron	136409	137306	-4.19	-	.	Name=rintron;postProb=0.06;avgBaseProb=0.463
chr25	SAMPLING	intron	133368	133821	-5.59	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.155
chr25	SAMPLING	intron	137979	138328	0.635	-	.	Name=rintron;postProb=0.52;avgBaseProb=0.925
chr25	SAMPLING	intron	133368	133595	-5.27	-	.	Name=rintron;postProb=0.03;avgBaseProb=0.16
chr25	SAMPLING	intron	133670	134892	-5.76	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.176
chr25	SAMPLING	intron	134914	137280	-5.04	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.39
chr25	SAMPLING	intron	138779	138906	-4.09	-	.	Name=rintron;postProb=0.15;avgBaseProb=0.24
chr25	SAMPLING	intron	139092	139639	2.99	-	.	Name=rintron;postProb=0.9;avgBaseProb=0.993
chr25	SAMPLING	intron	139938	140114	1.5	-	.	Name=rintron;postProb=0.73;avgBaseProb=0.8
chr25	SAMPLING	intron	138155	138504	-2.32	-	.	Name=rintron;postProb=0.09;avgBaseProb=0.811
chr25	SAMPLING	intron	133368	137306	-5.47	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.305
chr25	SAMPLING	intron	136144	137306	-4.4	-	.	Name=rintron;postProb=0.04;avgBaseProb=0.456
chr25	SAMPLING	intron	133368	137280	-5.53	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.303
chr25	SAMPLING	intron	134381	134892	-5.16	-	.	Name=rintron;postProb=0.05;avgBaseProb=0.21
chr25	SAMPLING	intron	135015	136014	-4.85	-	.	Name=rintron;postProb=0.03;avgBaseProb=0.354
chr25	SAMPLING	intron	134996	137113	-4.86	-	.	Name=rintron;postProb=0.03;avgBaseProb=0.397
chr25	SAMPLING	intron	137407	137599	-4.16	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.43
chr25	SAMPLING	intron	137642	137874	-4.21	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.43
chr25	SAMPLING	intron	135015	137306	-4.99	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.4
chr25	SAMPLING	intron	134381	137874	-5.28	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.357
chr25	SAMPLING	intron	138640	139639	-3.72	-	.	Name=rintron;postProb=0.05;avgBaseProb=0.597
chr25	SAMPLING	intron	134893	137306	-5.05	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.389
chr25	SAMPLING	intron	134914	136014	-5.06	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.338
chr25	SAMPLING	intron	136144	136345	-4.1	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.448
chr25	SAMPLING	intron	135015	137113	-4.91	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.399
chr25	SAMPLING	intron	135496	136014	-3.84	-	.	Name=rintron;postProb=0.12;avgBaseProb=0.431
chr25	SAMPLING	intron	136147	137897	-4.84	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.418
chr25	SAMPLING	intron	139797	140114	-3.81	-	.	Name=rintron;postProb=0.07;avgBaseProb=0.476
chr25	SAMPLING	intron	136059	136448	-4.54	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.396
chr25	SAMPLING	intron	136512	137113	-4.29	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.484
chr25	SAMPLING	intron	138670	138759	-5.43	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.0907
chr25	SAMPLING	intron	135496	137306	-4.67	-	.	Name=rintron;postProb=0.03;avgBaseProb=0.434
chr25	SAMPLING	intron	135727	137113	-4.63	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.44
chr25	SAMPLING	intron	136680	137113	-3.97	-	.	Name=rintron;postProb=0.04;avgBaseProb=0.497
chr25	SAMPLING	intron	138728	138906	-5.04	-	.	Name=rintron;postProb=0.03;avgBaseProb=0.201
chr25	SAMPLING	intron	139092	139561	-1.84	-	.	Name=rintron;postProb=0.05;avgBaseProb=1
chr25	SAMPLING	intron	136680	136792	-3.79	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.5
chr25	SAMPLING	intron	136902	137113	-3.95	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.5
chr25	SAMPLING	intron	138640	138759	-5.53	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.0855
chr25	SAMPLING	intron	138107	138328	-2.17	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.931
chr25	SAMPLING	intron	138640	139001	-5.62	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.134
chr25	SAMPLING	intron	141899	142250	3.64	-	.	Name=rintron;postProb=0.99;avgBaseProb=0.996
chr25	SAMPLING	intron	142368	143119	3.19	-	.	Name=rintron;postProb=0.95;avgBaseProb=0.99
chr25	SAMPLING	intron	143246	143334	2.6	-	.	Name=rintron;postProb=0.77;avgBaseProb=0.965
chr25	SAMPLING	intron	143514	143910	3.15	-	.	Name=rintron;postProb=0.91;avgBaseProb=0.997
chr25	SAMPLING	intron	144048	144441	0.373	-	.	Name=rintron;postProb=0.49;avgBaseProb=0.911
chr25	SAMPLING	intron	144566	144645	3.64	-	.	Name=rintron;postProb=0.92;avgBaseProb=1
chr25	SAMPLING	intron	144737	145127	3.69	-	.	Name=rintron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	145448	145524	4.11	-	.	Name=rintron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	145794	145959	3.91	-	.	Name=rintron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	146088	146443	2.91	-	.	Name=rintron;postProb=0.86;avgBaseProb=1
chr25	SAMPLING	intron	146637	146718	4.1	-	.	Name=rintron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	146945	150229	1.69	-	.	Name=rintron;postProb=0.75;avgBaseProb=0.999
chr25	SAMPLING	intron	143201	143334	-2.9	-	.	Name=rintron;postProb=0.05;avgBaseProb=0.668
chr25	SAMPLING	intron	144048	144232	0.98	-	.	Name=rintron;postProb=0.5;avgBaseProb=0.995
chr25	SAMPLING	intron	144299	144441	0.988	-	.	Name=rintron;postProb=0.49;avgBaseProb=0.995
chr25	SAMPLING	intron	143532	143910	-1.67	-	.	Name=rintron;postProb=0.07;avgBaseProb=1
chr25	SAMPLING	intron	143267	143334	-0.759	-	.	Name=rintron;postProb=0.15;avgBaseProb=1
chr25	SAMPLING	intron	144518	144645	-2.77	-	.	Name=rintron;postProb=0.08;avgBaseProb=0.655
chr25	SAMPLING	intron	146897	150229	-1.6	-	.	Name=rintron;postProb=0.19;avgBaseProb=0.987
chr25	SAMPLING	intron	142368	143334	-2.71	-	.	Name=rintron;postProb=0.03;avgBaseProb=0.865
chr25	SAMPLING	intron	143490	143910	-2.23	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.941
chr25	SAMPLING	intron	141899	142106	-1.86	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	146088	146449	-1.55	-	.	Name=rintron;postProb=0.1;avgBaseProb=0.985
chr25	SAMPLING	intron	146945	147509	-1.95	-	.	Name=rintron;postProb=0.04;avgBaseProb=1
chr25	SAMPLING	intron	147546	150229	-2.36	-	.	Name=rintron;postProb=0.04;avgBaseProb=1
chr25	SAMPLING	intron	146055	146443	-2.19	-	.	Name=rintron;postProb=0.04;avgBaseProb=0.919
chr25	SAMPLING	intron	142323	143119	-2.48	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.935
chr25	SAMPLING	intron	146945	147503	-2.06	-	.	Name=rintron;postProb=0.02;avgBaseProb=1
chr25	SAMPLING	intron	144281	144441	-2.04	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.94
chr25	SAMPLING	intron	147594	150229	-2.47	-	.	Name=rintron;postProb=0.02;avgBaseProb=1
chr25	SAMPLING	intron	144371	144441	-1.58	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	144132	144232	-1.67	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	CDS	136015	136146	-3.24	-	0	Name=rinternal2;postProb=0.13;avgBaseProb=0.202
chr25	SAMPLING	CDS	137307	137363	-3.67	-	0	Name=rinitial;postProb=0.07;avgBaseProb=0.48
chr25	SAMPLING	CDS	133596	133669	-4.04	-	2	Name=rinternal0;postProb=0.02;avgBaseProb=0.02
chr25	SAMPLING	CDS	137114	137201	-3.04	-	0	Name=rinternal2;postProb=0.2;avgBaseProb=0.2
chr25	SAMPLING	CDS	137307	137406	-1.97	-	1	Name=rinternal1;postProb=0.39;avgBaseProb=0.45
chr25	SAMPLING	CDS	137875	137978	-1.55	-	0	Name=rinternal2;postProb=0.42;avgBaseProb=0.998
chr25	SAMPLING	CDS	138074	138154	-2.43	-	0	Name=rinternal2;postProb=0.32;avgBaseProb=0.324
chr25	SAMPLING	CDS	138329	138415	-0.0953	-	0	Name=rinternal2;postProb=0.76;avgBaseProb=0.76
chr25	SAMPLING	CDS	138505	138606	0.0695	-	0	Name=rinitial;postProb=0.76;avgBaseProb=1
chr25	SAMPLING	CDS	136346	136408	-3.88	-	0	Name=rinternal2;postProb=0.06;avgBaseProb=0.06
chr25	SAMPLING	CDS	133822	133872	-4.21	-	0	Name=rinitial;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	133596	133669	-4.09	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	134893	134913	-4.47	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.08
chr25	SAMPLING	CDS	137281	137406	-3.71	-	1	Name=rinternal1;postProb=0.02;avgBaseProb=0.361
chr25	SAMPLING	CDS	138505	138778	-2.87	-	1	Name=rinternal1;postProb=0.13;avgBaseProb=0.479
chr25	SAMPLING	CDS	138907	139091	-2.54	-	0	Name=rinternal2;postProb=0.18;avgBaseProb=0.945
chr25	SAMPLING	CDS	139640	139937	0.0136	-	1	Name=rinternal1;postProb=0.68;avgBaseProb=0.96
chr25	SAMPLING	CDS	140115	140161	-0.0836	-	0	Name=rinitial;postProb=0.8;avgBaseProb=0.8
chr25	SAMPLING	CDS	136015	136143	-3.58	-	0	Name=rinternal2;postProb=0.06;avgBaseProb=0.203
chr25	SAMPLING	CDS	134326	134380	-3.87	-	1	Name=rterminal1;postProb=0.07;avgBaseProb=0.07
chr25	SAMPLING	CDS	134893	135014	-3.81	-	0	Name=rinternal2;postProb=0.03;avgBaseProb=0.067
chr25	SAMPLING	CDS	134893	134995	-3.91	-	2	Name=rinternal0;postProb=0.02;avgBaseProb=0.072
chr25	SAMPLING	CDS	137600	137641	-4.22	-	1	Name=rinternal1;postProb=0.02;avgBaseProb=0.02
chr25	SAMPLING	CDS	138505	138639	-3.23	-	0	Name=rinternal2;postProb=0.07;avgBaseProb=0.814
chr25	SAMPLING	CDS	139640	139927	-2.29	-	0	Name=rinitial;postProb=0.2;avgBaseProb=0.968
chr25	SAMPLING	CDS	134722	134892	-3.82	-	0	Name=rterminal2;postProb=0.01;avgBaseProb=0.02
chr25	SAMPLING	CDS	134722	134913	-3.78	-	0	Name=rterminal2;postProb=0.01;avgBaseProb=0.0189
chr25	SAMPLING	CDS	134829	134995	-3.81	-	2	Name=rterminal0;postProb=0.01;avgBaseProb=0.0521
chr25	SAMPLING	CDS	134829	135014	-3.78	-	0	Name=rterminal2;postProb=0.01;avgBaseProb=0.0509
chr25	SAMPLING	CDS	134914	135014	-3.94	-	2	Name=rterminal0;postProb=0.02;avgBaseProb=0.02
chr25	SAMPLING	CDS	135289	135495	-3.03	-	0	Name=rterminal2;postProb=0.15;avgBaseProb=0.15
chr25	SAMPLING	CDS	137898	137978	-3.6	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	CDS	139640	139796	-3.1	-	1	Name=rinternal1;postProb=0.07;avgBaseProb=1
chr25	SAMPLING	CDS	136015	136058	-4.17	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.21
chr25	SAMPLING	CDS	136449	136511	-4.15	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	138505	138669	-3.51	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=0.697
chr25	SAMPLING	CDS	138760	138778	-4.42	-	1	Name=rinternal1;postProb=0.02;avgBaseProb=0.15
chr25	SAMPLING	CDS	135680	135726	-4.19	-	2	Name=rterminal0;postProb=0.02;avgBaseProb=0.02
chr25	SAMPLING	CDS	135949	136146	-3.72	-	0	Name=rterminal2;postProb=0.01;avgBaseProb=0.138
chr25	SAMPLING	CDS	136567	136679	-3.8	-	2	Name=rterminal0;postProb=0.04;avgBaseProb=0.04
chr25	SAMPLING	CDS	138505	138727	-3.38	-	1	Name=rinternal1;postProb=0.03;avgBaseProb=0.557
chr25	SAMPLING	CDS	139562	139937	-3.02	-	1	Name=rinternal1;postProb=0.05;avgBaseProb=0.771
chr25	SAMPLING	CDS	136586	136679	-4.02	-	1	Name=rterminal1;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	136793	136901	-3.97	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	137871	137978	-0.83	-	0	Name=rterminal2;postProb=0.57;avgBaseProb=0.982
chr25	SAMPLING	CDS	138074	138106	-4.2	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=0.33
chr25	SAMPLING	CDS	139002	139091	-3.59	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=0.95
chr25	SAMPLING	CDS	138903	139091	0.241	-	0	Name=rterminal2;postProb=0.76;avgBaseProb=0.941
chr25	SAMPLING	CDS	141602	141898	1.56	-	0	Name=rterminal2;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	142251	142367	1.12	-	0	Name=rinternal2;postProb=0.97;avgBaseProb=0.996
chr25	SAMPLING	CDS	143120	143245	0.163	-	0	Name=rinternal2;postProb=0.77;avgBaseProb=0.952
chr25	SAMPLING	CDS	143335	143513	0.968	-	2	Name=rinternal0;postProb=0.91;avgBaseProb=0.997
chr25	SAMPLING	CDS	143911	144047	1.27	-	1	Name=rinternal1;postProb=0.99;avgBaseProb=1
chr25	SAMPLING	CDS	144442	144565	0.884	-	2	Name=rinternal0;postProb=0.92;avgBaseProb=0.969
chr25	SAMPLING	CDS	144646	144736	1.18	-	0	Name=rinternal2;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	145128	145447	1.59	-	2	Name=rinternal0;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	145525	145793	1.53	-	1	Name=rinternal1;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	145960	146087	1.1	-	0	Name=rinternal2;postProb=0.96;avgBaseProb=0.99
chr25	SAMPLING	CDS	146444	146636	0.944	-	1	Name=rinternal1;postProb=0.9;avgBaseProb=0.997
chr25	SAMPLING	CDS	146719	146944	0.547	-	2	Name=rinternal0;postProb=0.81;avgBaseProb=0.96
chr25	SAMPLING	CDS	150230	150296	1.08	-	0	Name=rinitial;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	143120	143200	-3.47	-	0	Name=rinternal2;postProb=0.04;avgBaseProb=0.97
chr25	SAMPLING	CDS	144233	144298	-1.6	-	1	Name=rinternal1;postProb=0.49;avgBaseProb=0.507
chr25	SAMPLING	CDS	143335	143531	-3.06	-	2	Name=rinternal0;postProb=0.07;avgBaseProb=0.913
chr25	SAMPLING	CDS	143120	143266	-2.81	-	0	Name=rinternal2;postProb=0.15;avgBaseProb=0.838
chr25	SAMPLING	CDS	144442	144517	-3.28	-	2	Name=rinternal0;postProb=0.08;avgBaseProb=1
chr25	SAMPLING	CDS	146719	146896	-2.48	-	2	Name=rinternal0;postProb=0.19;avgBaseProb=1
chr25	SAMPLING	CDS	143335	143489	-3.34	-	2	Name=rinternal0;postProb=0.02;avgBaseProb=1
chr25	SAMPLING	CDS	142107	142367	-3.48	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=0.452
chr25	SAMPLING	CDS	146450	146636	-2.9	-	1	Name=rinternal1;postProb=0.1;avgBaseProb=1
chr25	SAMPLING	CDS	147510	147545	-4.21	-	2	Name=rinternal0;postProb=0.03;avgBaseProb=0.06
chr25	SAMPLING	CDS	145960	146054	-3.4	-	0	Name=rinternal2;postProb=0.04;avgBaseProb=1
chr25	SAMPLING	CDS	142251	142322	-3.63	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	CDS	147504	147545	-4.26	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.0543
chr25	SAMPLING	CDS	144233	144280	-4	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.51
chr25	SAMPLING	CDS	147504	147593	-4.02	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.036
chr25	SAMPLING	CDS	142251	142472	-3.49	-	0	Name=rinitial;postProb=0.01;avgBaseProb=0.53
chr25	SAMPLING	CDS	144233	144370	-3.78	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.248
chr25	SAMPLING	CDS	147510	147593	-4.04	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.0371
chr25	SAMPLING	CDS	143911	144131	-3.45	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.624
chr25	SAMPLING	CDS	143000	143200	-3.59	-	0	Name=rterminal2;postProb=0.01;avgBaseProb=0.397
