# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'galGal4' -----
#
#----- prediction on sequence range chr14:23054-77235 (54182bp) -----
#
# start gene g1
chr14	AUGUSTUS	gene	40013	76227	.	+	.	g1
chr14	AUGUSTUS	transcript	40013	76227	.	+	.	g1.t1
chr14	AUGUSTUS	start_codon	40013	40015	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	40013	40890	0.99	+	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	40013	40890	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	76087	76227	0.95	+	1	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	76087	76227	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MNIQGKGFPLDLGGSFTEDAPRPPVPGEEGELVSTDPRPVSHGFYSSKSDAVRNETSTATPRRSDLDLGYEPEGSASP
# TPPYLKWAESLHSLLDDQDGINLFRTFLKQEDCADLLDFWFACSGFRKLEPCVSNEEKRLKLAKAIYKKYILDNNGIVSRQIKPATKSFIKDCVMKLQ
# IDPDMFDQAQTEIQCMIEDNTYPLFLKSDIYLEYTRTGGESPKIYSDPSSGSGTGKGLPGYLPTLNEDEEWKCDQDTEPEASRDSAPSSRLTQKLLLE
# TATQRATSTRRYSEGREFRHGSWREPVNPYYVNTGYAMAPATSANDSEQQSMSSDADTMSLTDSS]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 75
# CDS exons: 2/2
#      W:   2 
# CDS introns: 1/2
#      E:   1 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 168
#      E:   1 
#     RM: 167 
# incompatible hint groups: 30
#      E:   1 
#     RM:   1 
#      W:  28 
# end gene g1
###
