# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
#----- prediction on sequence range chr25:1-48695 (48695bp) -----
#
# start gene g1
chr25	AUGUSTUS	gene	1571	33610	0	-	.	g1
chr25	AUGUSTUS	transcript	1571	33610	.	-	.	g1.t1
chr25	AUGUSTUS	stop_codon	1571	1573	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	1571	1712	0.73	-	1	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	2335	2502	0.03	-	1	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	2863	2892	0.08	-	1	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	7589	7677	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	9956	10132	0.89	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	13453	13596	0.08	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	14576	14686	0.05	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	24872	24970	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	31588	31682	0.89	-	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	33550	33610	0.97	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	start_codon	33608	33610	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNS
# MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRD
# RRRRRSRSTSRERRKSSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSSKYKFSRERTSREESWERGRSERGATDWRLESANGKAASRRSEEKEAGEI]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 29
#     RM:  29 
# incompatible hint groups: 0
# end gene g1
###
