# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:149013-201000 (51988bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	158824	160062	0	-	.	g1
chr16	AUGUSTUS	transcript	158824	160062	.	-	.	g1.t1
chr16	AUGUSTUS	stop_codon	158824	158826	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	158824	158863	0.01	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	158824	158863	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	159185	160062	0.03	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	159185	160062	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	start_codon	160060	160062	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MNIQEQGFPLDLGASFTEDAPRPPVPGEEGELVSTDPRPASYSFCSGKGVGIKGETSTATPRRSDLDLGYEPEGSASP
# TPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQL
# IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESPKVCSDQSSGSGTGKGISGYLPTLNEDEEWKCDQDMDEDDGRDAAPPGRLPQKLLLE
# TAAPRVSSSRRYSEGREFRSWIYPVDMVLSA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 33.3
# CDS exons: 1/2
#      W:   1 
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 88
#      E:   1 
#      W:  87 
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	172213	174506	0	-	.	g2
chr16	AUGUSTUS	transcript	172213	174506	.	-	.	g2.t1
chr16	AUGUSTUS	stop_codon	172213	172215	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	172213	172371	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	172213	172371	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	174456	174506	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	174456	174506	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	start_codon	174504	174506	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MADSGTVGREQAHGARQNSSERQCRRTPLRTLGGVDSTLGWRGPPLGRLAGQAPALLPVLSCWPWRPDP]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 4
#     RM:   4 
# end gene g2
###
# start gene g3
chr16	AUGUSTUS	gene	180424	183255	0	-	.	g3
chr16	AUGUSTUS	transcript	180424	183255	.	-	.	g3.t1
chr16	AUGUSTUS	tts	180424	180424	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	exon	180424	180819	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	stop_codon	180712	180714	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	180712	180819	1	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	181365	181451	1	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	exon	181365	181451	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	181538	181672	1	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	exon	181538	181672	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	182105	182257	1	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	exon	182105	182257	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	182968	183255	0.94	-	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	exon	182968	183255	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	start_codon	183253	183255	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MPLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQRG
# LWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQL
# HPEDPERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQQALSEPAVVQKRASGQ]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 5/5
#      W:   5 
# CDS introns: 4/4
#      E:   4 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 42
#      E:   4 
#     RM:   1 
#      W:  37 
# incompatible hint groups: 64
#      W:  64 
# end gene g3
###
# start gene g4
chr16	AUGUSTUS	gene	185024	194858	0	-	.	g4
chr16	AUGUSTUS	transcript	185024	194858	.	-	.	g4.t1
chr16	AUGUSTUS	stop_codon	185024	185026	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	185024	185320	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	185024	185320	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	185648	185764	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	185648	185764	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	187042	187188	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	187042	187188	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	187258	187436	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	187258	187436	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	187793	187929	1	-	1	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	187793	187929	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	188170	188293	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	188170	188293	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	188382	188472	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	188382	188472	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	189173	189492	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	189173	189492	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	189581	189849	1	-	1	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	189581	189849	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	190074	190201	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	190074	190201	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	190415	190622	1	-	1	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	190415	190622	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	190708	190885	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	190708	190885	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	194738	194858	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	exon	194738	194858	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	start_codon	194856	194858	.	-	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MGRAGTGTGGEAVAAVVAGPLLLLLLARPPPASAGYSGKSEVGLVSEHFSQAPQRLSFYSWYGSARLFRFRVPPDAVL
# LRWLLQVSRESGAACTDAEITVHFRSGAPPVINPLGTSFPDDTAVQPSFQVGVPLSTTPRSNASVNVSHPAPGDWFVAAHLPPSSQKIELKGLAPTCA
# YVFQPELLVTRVVEISIMEPDVPLPQTLLSHPSYLKVFVPDYTRELLLELRDCVSNGSLGCPVRLTVGPVTLPSNFQKVLTCTGAPWPCRLLLPSPPW
# DRWLQVTAESLVGPLGTVAFSAVAALTACRPRSVTIQPLLQSSQNQSFNASSGLLSPSPDHQDLGRSGRVDRSPFCLTNYPVTREDMDVVSVHFQPLD
# RVSVRVCSDTPSVMRLRLNTGMDSGGSLTISLRANKTEMRNETVVVACVNAASPFLGFNTSLNCTTAFFQGYPLSLSAWSRRANLIIPYPETDNWYLS
# LQLMCPENAEDCEQAVVHVETTLYLVPCLNDCGPYGQCLLLRRHSYLYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLMFLAPIAVSVRR
# FFLVEASVYAYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGAAIWVTILCMARLKTVLKYVLFLLGTLVIAMSLQLDRRGMWNMLGPCLFAF
# VIMASMWAYRCGHRRQCYPTSWQRWAFYLLPGVSMASVGIAIYTSMMTSDNYYYTHSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDR
# EELYAVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 13/13
#      W:  13 
# CDS introns: 12/12
#      E:  12 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 13
#      E:  12 
#     RM:   1 
# incompatible hint groups: 417
#     RM:   1 
#      W: 416 
# end gene g4
###
# start gene g5
chr16	AUGUSTUS	gene	199800	200270	0	+	.	g5
chr16	AUGUSTUS	transcript	199800	200270	.	+	.	g5.t1
chr16	AUGUSTUS	start_codon	199800	199802	.	+	0	transcript_id "g5.t1"; gene_id "g5";
chr16	AUGUSTUS	CDS	199800	200270	0.81	+	0	transcript_id "g5.t1"; gene_id "g5";
chr16	AUGUSTUS	exon	199800	200270	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr16	AUGUSTUS	stop_codon	200268	200270	.	+	0	transcript_id "g5.t1"; gene_id "g5";
# protein sequence = [MALKAKKEAPASPEAEAKAKALKAKKAALKGVHSHIKKKTRTSLTFQRPKTLRRRRRPEYPWKSTPRRNKLGHYAVIK
# FPLTTESAVKRTEENNTLLFTVDVKANKHQIKQAVKKLYDGDVAEVTTLIPPDGEKKACVRLAPDYDALDVANKIGII]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 1/1
#      W:   1 
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 47
#      E:   4 
#      W:  43 
# end gene g5
###
