# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'monDom5' -----
#
#----- prediction on sequence range chr6:249223-418978 (169756bp) -----
#
# start gene g1
chr6	AUGUSTUS	gene	249275	251549	0	+	.	g1
chr6	AUGUSTUS	transcript	249275	251549	.	+	.	g1.t1
chr6	AUGUSTUS	CDS	249275	249456	0.61	+	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	250098	250205	0.98	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	251505	251549	0.99	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	stop_codon	251547	251549	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [APWCTHCKEMAQTWEDLAEKYKDREDIVIAELDSTANELEAFAIRGFPTLKYFPAGPDRKVIEYKSSRDLETFSKFLD
# NGGVLPEPEPKEPEVPLPEAGANDSKDHKDEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/3
# CDS introns: 0/3
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 7
#     RM:   7 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr6	AUGUSTUS	gene	255490	332951	0	-	.	g2
chr6	AUGUSTUS	transcript	255490	332951	.	-	.	g2.t1
chr6	AUGUSTUS	stop_codon	255490	255492	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	255490	255616	0.98	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	259013	259180	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	261886	261993	0.05	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	267609	267854	0.9	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	274074	274250	0.92	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	276354	276901	0.99	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	295021	295158	0.98	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	300726	300801	0.65	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	319898	320038	0.94	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	332935	332951	0.37	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	start_codon	332949	332951	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MLILKRHGSWREPVNPYYVNSGYALAPATSANDSEQQSMSSDADTMSLTDSSVDGVPPYRTRKQHRREMQESVKANGR
# RTYRMPKEIRVEPQKFAAELINRLEAVQRTREAEEKLEERLKRVRAEEEGEDANVSSGPPIVSHKLPSAQTLHHFPPRYTEMGCTGIRDVHEENPESI
# LDEHVQRVMKTPGCQSPGPGHHSPKPRSPDNGHTAKIPGTLGTGPSGHSKHCTKSGMKLDAANLYHHKHVYHHIHHHSVMKPKEQIEAEATQRVQNSF
# AWNAESHNYATKSRNYSENMGLTSNPVDGLGYSGKTSMLSKRNSKKADSGKSAGSNYEMPGSPEDVEKNQKIMQWIIEGEKEISRHKKTNHGSSGTKK
# QLGHDSSRPLSIERPGAVHPWVSAQLRNVVQPSHLFIQDPTMPPNPAPNPLTQLEEARRRLEEEEKRTGKLPTKQRYVQEVIQRGRSSVRPACMPMLN
# VVPAVSDMDLSESEAKLQKKPGNSSAPPCDTIVVAYYFCGEPIPYRTLVKGRVVTLGQFKELLTKKGNYRYYFKKVSDEFDCGVVFEEVREDDAILPI
# FEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 133
#     RM: 133 
# incompatible hint groups: 0
# end gene g2
###
