# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
#----- prediction on sequence range chr25:62870-102992 (40123bp) -----
#
# start gene g1
chr25	AUGUSTUS	gene	63568	66684	0	+	.	g1
chr25	AUGUSTUS	transcript	63568	66684	.	+	.	g1.t1
chr25	AUGUSTUS	CDS	63568	63698	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	63568	63698	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	63892	64024	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	63892	64024	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	64168	64297	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	64168	64297	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	64599	64739	0.99	+	1	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	64599	64739	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	64953	65028	1	+	1	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	64953	65028	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	65133	65288	0.07	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	65133	65288	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	65561	65663	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	65561	65663	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	65752	65963	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	65752	66684	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	stop_codon	65961	65963	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	tts	66684	66684	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [KTLWSQPSSFGGNASVLSPLLRVPDLDADGAPDLLVLIQEENQVNGSIYSGGTGQQVSPPDSLGVDGTSGSILHVTRA
# GAHYVLIPCGTALCSRSVKGLYEKVSRRDSPLKSDPLWEDMLSAASHRLVVHSSGAIRYLMNVPGKAGDDLLLVSTEAYMLLDGQDLTPRWTFGTTQV
# LRKPVLGYYKPDTPAVLVENGTGPDRQVLLLDLGSGAVLWSQALPGLPGDPPSASLPTADHRSAFFFWGIHEPTDSNQTEPGAAGRRLYMLHPTLPGV
# LLELDNVSVPIVAFQVVLLEPGRHAACILLTGPASPSPPGLVSVTKHKVQDLVLAGRVVHLAEGGAESDQAVRDRLSRLRYRSEA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/8
# CDS introns: 0/8
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr25	AUGUSTUS	gene	68167	75118	0	-	.	g2
chr25	AUGUSTUS	transcript	68167	75118	.	-	.	g2.t1
chr25	AUGUSTUS	stop_codon	68167	68169	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	68167	68275	0.54	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	68167	68275	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	68349	68431	0.56	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	68349	68431	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70127	70265	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	70127	70265	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70343	70430	0.97	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	70343	70430	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70522	70637	0.97	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	70522	70637	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70712	70825	0.92	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	70712	70825	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70933	70994	0.06	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	70933	70994	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	71069	71098	0.02	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	71069	71098	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	71895	71963	0.02	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	71895	71963	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	72985	73066	0.03	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	72985	73066	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	73184	73260	0.74	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	73184	73260	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	73420	73478	0.71	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	73420	73478	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	73592	73643	0.74	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	73592	73643	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	74245	74351	0.39	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	74245	74351	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	74456	74506	0.1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	74456	74506	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	74587	74683	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	74587	74683	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	75056	75118	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	75056	75118	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	start_codon	75116	75118	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAASPAPLGGHPRVQRPHLSKMERMVVTMQDPDQGVRMRSQRLLVTVIPHAVNGSDIVEWLMQKYSIAEDEALHLGSL
# LVQHGYLYPLRDPRRLELRPDETPYRFQTPYFWTSTLWPAAELDYAIYLAKKNIRKQGALVDHEKEHYQQLHRKINHAWDLVMMQAREQLRAAKQRRK
# GDRLVIACQEQTYWLVNRPPPGAPSVLEQGPGRGPCTAGRVPMTKTLDFYRREVECLRRALGRARVKSSTCLEAYLKFSSQHGPHDPIMSGCLPSNPW
# VTDDDAYWAMNAPSAAVPTRLRVEQWAFSFRELLEDPVGRAHFMDFLGKEFSAENLSFWEACEELRHGGQAQVPALVDAVYQQFLAPGAARWVNIDSR
# TMEQTLAGLTQPHRHVLDDAQRHIYLLMKKDSYPRFLKSDLYRDLLAEAVVPLETKRRVFPFTRKPRHSSPSPALLPASASGEPVGGDGDGET]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/17
# CDS introns: 0/15
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 5
#     RM:   5 
# incompatible hint groups: 1
#     RM:   1 
# end gene g2
###
# start gene g3
chr25	AUGUSTUS	gene	78692	85532	0	+	.	g3
chr25	AUGUSTUS	transcript	78692	85532	.	+	.	g3.t1
chr25	AUGUSTUS	start_codon	78692	78694	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	78692	78707	0.2	+	0	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	exon	78692	78707	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	84279	84458	0.5	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	exon	84279	84458	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	84529	84612	0.9	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	exon	84529	84612	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	84845	84921	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	exon	84845	84921	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	85001	85064	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	exon	85001	85064	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	85148	85347	0.83	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	exon	85148	85532	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	stop_codon	85345	85347	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	tts	85532	85532	.	+	.	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MDSLPVLLTDKEGGQLPPEEALDEAVPEYRAPGKKSLLEIQQLDPDDESLVKYKRALLGPVLPAVDPSLPNVQVTRLT
# LISEQAPGPIVMDLTGELAALKNQVFVLKEGVDYKVKITFKVNKEIVSGLKCLHHTYRHGLRVDKAVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGA
# YVVTSFFTDDDRTAHLSWEWGLYVCQDWER]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/6
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 10
#     RM:  10 
# incompatible hint groups: 1
#     RM:   1 
# end gene g3
###
# start gene g4
chr25	AUGUSTUS	gene	85689	88735	0	+	.	g4
chr25	AUGUSTUS	transcript	85689	88735	.	+	.	g4.t1
chr25	AUGUSTUS	start_codon	85689	85691	.	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	85689	85914	0.83	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	85689	85914	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	86479	86685	1	+	2	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	86479	86685	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	86765	86898	1	+	2	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	86765	86898	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	86972	87109	0.87	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	86972	87109	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87183	87299	0.98	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	87183	87299	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87377	87502	0.97	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	87377	87502	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87571	87768	0.98	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	87571	87768	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87849	87969	0.95	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	87849	87969	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	88046	88227	0.87	+	2	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	88046	88227	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	88341	88451	0.78	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	88341	88451	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	88574	88648	1	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	exon	88574	88735	.	+	.	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	stop_codon	88646	88648	.	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	tts	88735	88735	.	+	.	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MDGQFLPVLVLLLGASGLCGQGLGPRGPLEEPPEEKPPEEKPPEEEPPEEDGVLVLSRQTLGQALQEHPALLVEFYAP
# WCGHCRALAPEYSKAAALLAAESARVTLAKVDGPAEPELAEEFAVTEYPTLKFFREGNRTHPEEYTGPREAEGIAEWLRRRVGPSARQLEDEEDIRAL
# TDTRDVVVVGFFQDLQDRDVATFLGLAQDALDMTFGLTDRPQLFQKFGLTKDTVVLFKKYDEGRADFPVDKELGLDQGDLSRFLLTHSMHLVTEYSSE
# TSSKIFEAKILNHLLLFINQTLDAHRELLAGFREAAPPFRGQVLFVVVDVGADNDHVLQYFGLKAQEAPTLRFINIETTKKYAPEHGAPVTAATITDF
# CRTVLGGGVKPYHLSQEVPPDWDQRPVKTLVGKNFEQVAFDETKNVFIKFYAPWCAHCKEMAPAWEELAEKYRDHEDVIIAELDATANELEAFPVHGF
# PTLKYFPAGPGRKVIDYKGARDLETFSKFLDSGGELPAEEPAEVPGAAFPEKPGNTTEPKDEKPGNTTEPRDEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 1
#     RM:   1 
# end gene g4
###
# start gene g5
chr25	AUGUSTUS	gene	89050	101099	0	-	.	g5
chr25	AUGUSTUS	transcript	89050	101099	.	-	.	g5.t1
chr25	AUGUSTUS	tts	89050	89050	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	89050	89762	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	stop_codon	89636	89638	.	-	0	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	89636	89762	1	-	1	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	90391	90558	0.99	-	1	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	90391	90558	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	92029	92136	0.17	-	1	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	92029	92136	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	93476	93721	0.97	-	1	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	93476	93721	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	95734	95904	1	-	1	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	95734	95904	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	96337	96863	0.06	-	0	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	96337	96863	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	100197	100334	0.93	-	0	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	100197	100334	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	CDS	101003	101099	.	-	1	transcript_id "g5.t1"; gene_id "g5";
chr25	AUGUSTUS	exon	101003	101099	.	-	.	transcript_id "g5.t1"; gene_id "g5";
# protein sequence = [DGVPPYRTRRQHRREMQESVQANGRVPLPHIPRTYRMPKEVRVEPQKFAAELIHRLEAVQRTREAEEELEERLKRVRM
# EEEGEDSDMPSGPQGASHKLPSAPAWHHFPSRYADVGCTGLRDAHEENPESILDEHVQRVMRTPGCQSPGPGHRSPDSAHVPKIGVLGGAMPGHGKHA
# PKLGAKLDPTGLHLHRHGHHHGHHGAARPKEPAEAEAARRVPGSFAWGPELHGHAAKPRSHVESTGAPPAGGDGLAYGGKVGTTSKRNSKKAELGKSS
# STEAPGPSEDAEKNQKIMQWIIEGEKEISRHRKAGHGSSGAKKQQAHESSRPLSIERPGAVHPWVSAQLRSSVQPSHLFIQDPTMPPNPAPNPLTQLE
# EARRRLEEEEKRASKAPSKQRYVQEVIQRGRCCVRPACTPVLSAVPAVSDLELSETETKSQRKAGGGSTQPCDSIVVAYYFCGEPIPYRTLVRGRAVT
# LGQFKELLTKKGNYRFYFKKVSDEFECGVVFEEVREDTAVLPVFEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/8
# CDS introns: 0/7
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 6
#     RM:   6 
# incompatible hint groups: 2
#     RM:   2 
# end gene g5
###
