# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:42756-93097 (50342bp) -----
#
# start gene g2
chr6	AUGUSTUS	gene	55420	91046	.	+	.	g2
chr6	AUGUSTUS	transcript	55420	91046	.	+	.	g2.t1
chr6	AUGUSTUS	start_codon	55420	55422	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	55420	55538	0.49	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	67472	67612	0.93	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	71165	71261	0.82	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	77034	77103	0.25	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	78429	78505	0.86	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	79014	79151	0.94	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	82780	83309	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	84005	84175	0.97	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	86687	86932	0.96	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	88713	88820	0.84	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	90322	90489	0.98	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	90920	91046	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	stop_codon	91044	91046	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MGESSGLAAPLRLDLDPHSLPLMKSKCGKGAGRRCEVLCTCGSWREPVHPYYVSSGYALAPATSANDSEQQSLSSDAD
# SLSLTDSSVDGIPPYRIRKQHRREMQESVQVNGRVPLPHIPKVHGFNDSLFLGDFPVPLQLEGTEQSRIPSLVWALGGCCPVLRRAVLQARTYRMPKE
# IRVEPQKFAAELIHRLEAIQRTREAEEKLEERLKRVRMEEEGEDGDVPSGPLGAIHKLPLAPAWHHFPPRYADVGCVGLRDAHEENPESILDEHVQRV
# MRTPGCQSPGPGHRSPDNAHVPKIVGVLGGVPSGHGKHAPKSGAKLDTAGPHLHRHSHHHSHHSAARPKEQADAEAARRVQGSFAWGPELHGHTAKPR
# SHSESVGAAPNASDSLAYSGKAGTASRRNAKKAESGKNASTEVPGPSEDTDKNQKIMQWIIEGEKEISRHRKAGHGSSGAKKQQVHESSRPLSVERPG
# AVHPWVSAQLRNSVQPSHLFIQDPTMPPNPAPNPLTQLEEARRRLEEEEKRASKLPSKQRYVQEVIQRGRSCIRPTCTPVLSVVPAVSDLELSETETK
# SQRKAGSGSAQPCDSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGNYRYYFKKVSDEFDCGVVFEEVREDEAVLPVFEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/12
# CDS introns: 0/11
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 39
#     RM:  39 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr6	AUGUSTUS	gene	91963	93097	.	-	.	g1
chr6	AUGUSTUS	transcript	91963	93097	.	-	.	g1.t1
chr6	AUGUSTUS	stop_codon	91963	91965	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	91963	92007	0.25	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92113	92223	0.22	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92393	92574	1	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92765	92885	0.99	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92977	93097	0.94	-	1	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [PALRIINMETTKKYAPVGGGPLTAAAVATFCHAVLSGQVKPYLLSQDVPPDWDRRPVKTLVGKNFEQVAFDETKNVFV
# KFYAPWCTHCKAMAAAWEALAEKYKDHEDIVIAELDATANELEAFPVHGFPTLKYFPAGPGRKVIEYKSTRDVETFSKFLDNGGELPAEEPTEEPTAP
# FPDTPANASAEPKEEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 0
# end gene g1
###
