# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:42756-93097 (50342bp) -----
#
# start gene g2
chr6	AUGUSTUS	gene	67472	91634	.	+	.	g2
chr6	AUGUSTUS	transcript	67472	91634	.	+	.	g2.t1
chr6	AUGUSTUS	CDS	67472	67612	0.96	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	67472	67612	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	71165	71261	0.85	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	71165	71261	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	77091	77103	0.34	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	77091	77103	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	78429	78505	0.86	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	78429	78505	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	79014	79151	0.97	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	79014	79151	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	82780	83309	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	82780	83309	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	84005	84175	0.98	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	84005	84175	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	86687	86932	0.97	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	86687	86932	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	88713	88820	0.83	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	88713	88820	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	90322	90489	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	90322	90489	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	90920	91046	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	90920	91634	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	stop_codon	91044	91046	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	tts	91634	91634	.	+	.	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [CGSWREPVHPYYVSSGYALAPATSANDSEQQSLSSDADSLSLTDSSVDGIPPYRIRKQHRREMQESVQVNGRVPLPHI
# PLEGTEQSRIPSLVWALGGCCPVLRRAVLQARTYRMPKEIRVEPQKFAAELIHRLEAIQRTREAEEKLEERLKRVRMEEEGEDGDVPSGPLGAIHKLP
# LAPAWHHFPPRYADVGCVGLRDAHEENPESILDEHVQRVMRTPGCQSPGPGHRSPDNAHVPKIVGVLGGVPSGHGKHAPKSGAKLDTAGPHLHRHSHH
# HSHHSAARPKEQADAEAARRVQGSFAWGPELHGHTAKPRSHSESVGAAPNASDSLAYSGKAGTASRRNAKKAESGKNASTEVPGPSEDTDKNQKIMQW
# IIEGEKEISRHRKAGHGSSGAKKQQVHESSRPLSVERPGAVHPWVSAQLRNSVQPSHLFIQDPTMPPNPAPNPLTQLEEARRRLEEEEKRASKLPSKQ
# RYVQEVIQRGRSCIRPTCTPVLSVVPAVSDLELSETETKSQRKAGSGSAQPCDSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGNYRYYFKK
# VSDEFDCGVVFEEVREDEAVLPVFEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 21
#     RM:  21 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr6	AUGUSTUS	gene	91857	93075	.	-	.	g1
chr6	AUGUSTUS	transcript	91857	93075	.	-	.	g1.t1
chr6	AUGUSTUS	tts	91857	91857	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	91857	92007	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	stop_codon	91963	91965	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	91963	92007	0.23	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92113	92223	0.18	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	92113	92223	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92393	92574	1	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	92393	92574	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92765	92885	0.98	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	92765	92885	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	92977	93075	0.97	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	92977	93075	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	start_codon	93073	93075	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [METTKKYAPVGGGPLTAAAVATFCHAVLSGQVKPYLLSQDVPPDWDRRPVKTLVGKNFEQVAFDETKNVFVKFYAPWC
# THCKAMAAAWEALAEKYKDHEDIVIAELDATANELEAFPVHGFPTLKYFPAGPGRKVIEYKSTRDVETFSKFLDNGGELPAEEPTEEPTAPFPDTPAN
# ASAEPKEEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 0
# end gene g1
###
