# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
chr25	SAMPLING	intron	15652	21877	-3.54	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.81
chr25	SAMPLING	intron	21907	22488	-0.721	-	.	Name=rintron;postProb=0.26;avgBaseProb=0.992
chr25	SAMPLING	intron	22614	24871	2.59	-	.	Name=rintron;postProb=0.89;avgBaseProb=0.999
chr25	SAMPLING	intron	24971	32658	-2.33	-	.	Name=rintron;postProb=0.1;avgBaseProb=0.989
chr25	SAMPLING	intron	32730	33549	-1.93	-	.	Name=rintron;postProb=0.08;avgBaseProb=0.973
chr25	SAMPLING	intron	16335	16810	-0.175	-	.	Name=rintron;postProb=0.52;avgBaseProb=0.75
chr25	SAMPLING	intron	16916	22488	-0.189	-	.	Name=rintron;postProb=0.49;avgBaseProb=0.942
chr25	SAMPLING	intron	24971	31587	1.91	-	.	Name=rintron;postProb=0.82;avgBaseProb=1
chr25	SAMPLING	intron	31683	33549	0.442	-	.	Name=rintron;postProb=0.52;avgBaseProb=0.984
chr25	SAMPLING	intron	16335	22488	-1.89	-	.	Name=rintron;postProb=0.22;avgBaseProb=0.916
chr25	SAMPLING	intron	31683	32658	-2.27	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.999
chr25	SAMPLING	intron	32730	32901	-1.81	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	32978	33549	-2.28	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.963
chr25	SAMPLING	intron	31683	33025	-0.703	-	.	Name=rintron;postProb=0.3;avgBaseProb=0.993
chr25	SAMPLING	intron	33068	33549	-0.283	-	.	Name=rintron;postProb=0.33;avgBaseProb=0.988
chr25	SAMPLING	intron	22629	24871	-1.9	-	.	Name=rintron;postProb=0.11;avgBaseProb=1
chr25	SAMPLING	intron	16884	21877	-2.91	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.933
chr25	SAMPLING	intron	31650	33549	-2.57	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.969
chr25	SAMPLING	intron	24971	32901	-2.8	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.988
chr25	SAMPLING	intron	32912	33025	-1.67	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.994
chr25	SAMPLING	intron	33264	33549	-1.83	-	.	Name=rintron;postProb=0.03;avgBaseProb=1
chr25	SAMPLING	intron	24971	31287	-2.75	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	31321	31587	-1.92	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	24971	28576	-2.61	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	28583	31587	-2.56	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	31683	32064	-2.03	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.998
chr25	SAMPLING	intron	32076	33025	-2.3	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.991
chr25	SAMPLING	intron	16916	21025	-2.91	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.936
chr25	SAMPLING	intron	21108	21877	-2.41	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.95
chr25	SAMPLING	intron	24971	31146	-2.75	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	31174	31587	-2.04	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.999
chr25	SAMPLING	intron	16916	21877	-2.08	-	.	Name=rintron;postProb=0.16;avgBaseProb=0.938
chr25	SAMPLING	intron	24971	31756	-2.76	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.988
chr25	SAMPLING	intron	31798	33025	-2.35	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.993
chr25	SAMPLING	intron	24971	25238	-1.93	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	25382	33549	-2.88	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.986
chr25	SAMPLING	intron	32730	33025	-1.91	-	.	Name=rintron;postProb=0.02;avgBaseProb=0.997
chr25	SAMPLING	intron	16972	21877	-2.94	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.938
chr25	SAMPLING	intron	17024	22488	-2.95	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.943
chr25	SAMPLING	intron	31798	33549	-2.49	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.983
chr25	SAMPLING	intron	18881	21877	-2.79	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.944
chr25	SAMPLING	intron	20598	20933	-2.19	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.95
chr25	SAMPLING	intron	21053	22488	-2.52	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.962
chr25	SAMPLING	intron	22395	22488	-1.65	-	.	Name=rintron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	35355	56321	-7.19	-	.	Name=rintron;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	intron	46635	54433	-6.21	+	.	Name=intron;postProb=0.05;avgBaseProb=0.128
chr25	SAMPLING	intron	54486	58055	-5.6	+	.	Name=intron;postProb=0.05;avgBaseProb=0.227
chr25	SAMPLING	intron	58096	58388	-4.88	+	.	Name=intron;postProb=0.05;avgBaseProb=0.243
chr25	SAMPLING	intron	58687	62301	-2.26	+	.	Name=intron;postProb=0.07;avgBaseProb=1
chr25	SAMPLING	intron	62503	62696	3.87	+	.	Name=intron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	62889	63567	3.55	+	.	Name=intron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	63699	63891	3.87	+	.	Name=intron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	64025	64167	3.95	+	.	Name=intron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	64298	64598	3.76	+	.	Name=intron;postProb=1;avgBaseProb=1
chr25	SAMPLING	intron	46635	62382	-5.68	+	.	Name=intron;postProb=0.01;avgBaseProb=0.354
chr25	SAMPLING	intron	54490	58388	-5.5	+	.	Name=intron;postProb=0.07;avgBaseProb=0.227
chr25	SAMPLING	intron	58687	62382	2.46	+	.	Name=intron;postProb=0.89;avgBaseProb=0.998
chr25	SAMPLING	intron	46713	54433	-6.27	+	.	Name=intron;postProb=0.04;avgBaseProb=0.129
chr25	SAMPLING	intron	54490	58055	-5.77	+	.	Name=intron;postProb=0.02;avgBaseProb=0.227
chr25	SAMPLING	intron	58104	58388	-4.92	+	.	Name=intron;postProb=0.04;avgBaseProb=0.244
chr25	SAMPLING	intron	47651	58055	-6.37	+	.	Name=intron;postProb=0.01;avgBaseProb=0.164
chr25	SAMPLING	intron	51671	54433	-6.02	+	.	Name=intron;postProb=0.01;avgBaseProb=0.165
chr25	SAMPLING	intron	51605	54433	-6.03	+	.	Name=intron;postProb=0.01;avgBaseProb=0.164
chr25	SAMPLING	intron	51829	54433	-5.94	+	.	Name=intron;postProb=0.02;avgBaseProb=0.167
chr25	SAMPLING	intron	58104	58213	-4.82	+	.	Name=intron;postProb=0.01;avgBaseProb=0.25
chr25	SAMPLING	intron	51973	54433	-5.98	+	.	Name=intron;postProb=0.01;avgBaseProb=0.168
chr25	SAMPLING	intron	53978	58388	-5.9	+	.	Name=intron;postProb=0.01;avgBaseProb=0.223
chr25	SAMPLING	intron	54050	58388	-5.78	+	.	Name=intron;postProb=0.03;avgBaseProb=0.224
chr25	SAMPLING	intron	54050	58055	-5.87	+	.	Name=intron;postProb=0.01;avgBaseProb=0.223
chr25	SAMPLING	intron	58687	62406	-2.59	+	.	Name=intron;postProb=0.02;avgBaseProb=0.992
chr25	SAMPLING	intron	56513	58055	-5.52	+	.	Name=intron;postProb=0.01;avgBaseProb=0.249
chr25	SAMPLING	intron	56570	58388	-5.45	+	.	Name=intron;postProb=0.03;avgBaseProb=0.247
chr25	SAMPLING	intron	64740	64869	-5.87	+	.	Name=intron;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	intron	58687	60416	-2.41	+	.	Name=intron;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	intron	60498	62382	-2.45	+	.	Name=intron;postProb=0.01;avgBaseProb=0.997
chr25	SAMPLING	CDS	21878	21906	-3.27	-	1	Name=rinternal1;postProb=0.22;avgBaseProb=0.26
chr25	SAMPLING	CDS	22489	22613	0.758	-	0	Name=rinternal2;postProb=0.89;avgBaseProb=1
chr25	SAMPLING	CDS	24872	24970	1.21	-	0	Name=rinternal2;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	32659	32729	-3.63	-	2	Name=rinternal0;postProb=0.1;avgBaseProb=0.1
chr25	SAMPLING	CDS	33550	33610	1	-	0	Name=rinitial;postProb=0.99;avgBaseProb=0.997
chr25	SAMPLING	CDS	16268	16334	-0.285	-	1	Name=rterminal1;postProb=0.74;avgBaseProb=0.74
chr25	SAMPLING	CDS	16811	16915	-1.4	-	1	Name=rinternal1;postProb=0.5;avgBaseProb=0.514
chr25	SAMPLING	CDS	31588	31682	0.357	-	2	Name=rinternal0;postProb=0.84;avgBaseProb=0.847
chr25	SAMPLING	CDS	32659	32729	-4.11	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	32902	32977	-4.09	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	33026	33067	-2.59	-	2	Name=rinternal0;postProb=0.33;avgBaseProb=0.33
chr25	SAMPLING	CDS	22489	22628	-2.99	-	0	Name=rinternal2;postProb=0.11;avgBaseProb=0.905
chr25	SAMPLING	CDS	16811	16883	-3.81	-	2	Name=rinternal0;postProb=0.02;avgBaseProb=0.52
chr25	SAMPLING	CDS	31588	31649	-3.75	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.85
chr25	SAMPLING	CDS	32902	32911	-4.69	-	1	Name=rinternal1;postProb=0.02;avgBaseProb=0.02
chr25	SAMPLING	CDS	33026	33263	-3.61	-	2	Name=rinternal0;postProb=0.03;avgBaseProb=0.03
chr25	SAMPLING	CDS	31288	31320	-4.35	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	28577	28582	-4.9	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	33550	33592	-3.8	-	0	Name=rinitial;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	CDS	32065	32075	-4.71	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	21026	21107	-4.06	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.0133
chr25	SAMPLING	CDS	31147	31173	-4.42	-	0	Name=rinternal2;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	16908	16915	-4.02	-	2	Name=rterminal0;postProb=0.16;avgBaseProb=0.16
chr25	SAMPLING	CDS	31757	31797	-4.23	-	2	Name=rinternal0;postProb=0.02;avgBaseProb=0.02
chr25	SAMPLING	CDS	25239	25381	-3.88	-	2	Name=rinternal0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	16964	16971	-4.81	-	2	Name=rterminal0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	16975	17023	-4.23	-	1	Name=rterminal1;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	18870	18880	-4.71	-	2	Name=rterminal0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	20581	20597	-4.57	-	2	Name=rterminal0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	20934	21052	-3.94	-	1	Name=rinternal1;postProb=0.01;avgBaseProb=0.0123
chr25	SAMPLING	CDS	21867	21906	-4.06	-	1	Name=rterminal1;postProb=0.04;avgBaseProb=0.2
chr25	SAMPLING	CDS	22364	22394	-4.37	-	1	Name=rterminal1;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	35190	35354	-3.83	-	0	Name=rterminal2;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	56322	56408	-3.78	-	0	Name=rinitial;postProb=0.06;avgBaseProb=0.06
chr25	SAMPLING	CDS	46571	46634	-3.86	+	0	Name=initial1;postProb=0.06;avgBaseProb=0.1
chr25	SAMPLING	CDS	54434	54485	-3.95	+	2	Name=internal2;postProb=0.05;avgBaseProb=0.14
chr25	SAMPLING	CDS	58056	58095	-4.08	+	1	Name=internal0;postProb=0.05;avgBaseProb=0.06
chr25	SAMPLING	CDS	58389	58686	-2.17	+	0	Name=internal1;postProb=0.23;avgBaseProb=0.906
chr25	SAMPLING	CDS	62302	62502	-3.19	+	2	Name=internal1;postProb=0.07;avgBaseProb=0.623
chr25	SAMPLING	CDS	62697	62888	1.42	+	2	Name=internal1;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	63568	63698	1.3	+	2	Name=internal0;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	63892	64024	1.3	+	0	Name=internal1;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	64168	64297	1.3	+	2	Name=internal2;postProb=1;avgBaseProb=1
chr25	SAMPLING	CDS	64599	64851	1.46	+	1	Name=terminal;postProb=0.99;avgBaseProb=0.996
chr25	SAMPLING	CDS	62383	62502	0.838	+	2	Name=internal1;postProb=0.91;avgBaseProb=0.996
chr25	SAMPLING	CDS	54434	54489	-3.74	+	2	Name=internal0;postProb=0.09;avgBaseProb=0.136
chr25	SAMPLING	CDS	46571	46712	-3.71	+	0	Name=initial1;postProb=0.04;avgBaseProb=0.067
chr25	SAMPLING	CDS	58056	58103	-4.08	+	0	Name=internal0;postProb=0.04;avgBaseProb=0.04
chr25	SAMPLING	CDS	47648	47650	-5.13	+	0	Name=initial0;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	51562	51670	-3.97	+	0	Name=initial1;postProb=0.01;avgBaseProb=0.0139
chr25	SAMPLING	CDS	51562	51604	-4.26	+	0	Name=initial1;postProb=0.01;avgBaseProb=0.02
chr25	SAMPLING	CDS	51687	51828	-3.83	+	0	Name=initial1;postProb=0.02;avgBaseProb=0.02
chr25	SAMPLING	CDS	58056	58103	-4.21	+	1	Name=internal2;postProb=0.01;avgBaseProb=0.0517
chr25	SAMPLING	CDS	58214	58223	-4.74	+	1	Name=terminal;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	51933	51972	-4.29	+	0	Name=initial1;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	53957	53977	-4.48	+	0	Name=initial0;postProb=0.01;avgBaseProb=0.05
chr25	SAMPLING	CDS	53957	54049	-3.86	+	0	Name=initial0;postProb=0.04;avgBaseProb=0.0423
chr25	SAMPLING	CDS	62407	62502	-3.49	+	2	Name=internal1;postProb=0.02;avgBaseProb=1
chr25	SAMPLING	CDS	56490	56512	-4.47	+	0	Name=initial2;postProb=0.01;avgBaseProb=0.01
chr25	SAMPLING	CDS	56552	56569	-4.44	+	0	Name=initial0;postProb=0.03;avgBaseProb=0.03
chr25	SAMPLING	CDS	58422	58686	0.373	+	0	Name=initial1;postProb=0.76;avgBaseProb=0.99
chr25	SAMPLING	CDS	64599	64739	-3.42	+	1	Name=internal2;postProb=0.01;avgBaseProb=1
chr25	SAMPLING	CDS	60417	60497	-4.06	+	2	Name=internal1;postProb=0.01;avgBaseProb=0.01
