# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'mm10' -----
#
#----- prediction on sequence range chr17:1-30776 (30776bp) -----
#
# start gene g3
chr17	AUGUSTUS	gene	8512	17296	.	+	.	g3
chr17	AUGUSTUS	transcript	8512	17296	.	+	.	g3.t1
chr17	AUGUSTUS	start_codon	8512	8514	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	8512	8629	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	8512	8629	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	11821	11995	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	11821	11995	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12081	12288	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	12081	12288	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12473	12600	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	12473	12600	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12801	13069	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	12801	13069	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	13172	13491	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	13172	13491	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	13924	14014	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	13924	14014	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	14095	14218	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	14095	14218	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	14461	14597	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	14461	14597	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	15346	15524	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	15346	15524	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	15601	15747	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	15601	15747	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	16602	16718	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	16602	16718	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	17000	17296	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	exon	17000	17296	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	stop_codon	17294	17296	.	+	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MGRVGAGGTAREAATGSLLLLLLLLARPPPAAASNSKESEAGLVSEHFSQAPQKLSFYSWYGSTRLFHFRVPPDTVLL
# RWLLHVSQGSPSCTDEEITVHFRYGAPPVINPLGTSFPDNTLSHASFHIRALLSTLMLDNTSVNISHPAPGDWFLVAHLPPSSQKIQVKGFVPTCAYI
# FQPDMLVMRVVEVSTLEPDVPLPQTLLSYPSYLKIFVPEYTQELRLELQGCVSSVSPGCPVRVTVGATTLPRNFQRVLTCTGLAPSCHLLLSSPPWGR
# WLQVTFESLAEPHVTVGFTAKAVFTVCRPWSVTIHHLIQNNPNQTYDTSAIQLSQSAVHRDLGRSSRVDSGPFCLLNYPVLREDTDVVSVHFQPLNGA
# FVLVHSSMPSVMQLRLDTGMDSGGSFIIVLRTNKTEVTNGTLVAACVNAASPFLSFNTSLNCTTAFFQGYPMFLRASSHMANLIMPFPETDNWYLSLQ
# LVCPESPEDCEQAVVRVETILYLVPCLNDCGPYGQCLLLRRYGYVYAGCSCKAGWRGWSCTDNSTAQTVAQQRAAALLLTLSNLMFLAPIAISLHRSF
# LVEASVYFYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGASTWVTILCMARLKTILKQVLLVLGTLVIAMSLQMDRRGIWNLMGPCVFAFVI
# MASMWIYRCGHRGQCYPTSWQRWVFYLLPGISMASVGIAMYTSMMTSDNYYYTHSIWHILLAGSAAFLLPPREEKAGSWACLQKFPCHYQICRNDRDE
# LYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 13/13
#      W:  13 
# CDS introns: 12/12
#      E:  12 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 12
#      E:  12 
# incompatible hint groups: 281
#      E:   1 
#      W: 280 
# end gene g3
###
# start gene g2
chr17	AUGUSTUS	gene	18582	21677	.	+	.	g2
chr17	AUGUSTUS	transcript	18582	21677	.	+	.	g2.t1
chr17	AUGUSTUS	tss	18582	18582	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	exon	18582	18911	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	start_codon	18624	18626	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	18624	18911	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	19618	19770	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	exon	19618	19770	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	20319	20453	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	exon	20319	20453	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	20540	20626	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	exon	20540	20626	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	21333	21443	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	exon	21333	21677	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	stop_codon	21441	21443	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	tts	21677	21677	.	+	.	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MPLHRYPVHLWQKLRLRQGICARLPAHFLRSLEEERTPTPVHYKPHGTKFKINPKNGQRERVEDVPIPVHYPPESQQG
# LWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDLIDEAYGFDFYILKTPKEDLGSKFGMDLKRGMLLRLARQDPHL
# HPENPERRAAIYDKYRSFVIPEAEAEWVGLTLEEALEKQRLLEEKDPVPLFKVYVEELVQRLQEQVLSRPAVVQKRAGDHA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 5/5
#      W:   5 
# CDS introns: 4/4
#      E:   4 
# 5'UTR exons and introns: 1/1
#      W:   1 
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 68
#      E:   4 
#      W:  64 
# incompatible hint groups: 41
#      W:  41 
# end gene g2
###
# start gene g1
chr17	AUGUSTUS	gene	26454	26504	.	+	.	g1
chr17	AUGUSTUS	transcript	26454	26504	.	+	.	g1.t1
chr17	AUGUSTUS	start_codon	26454	26456	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	26454	26504	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	26454	26504	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MADSGTVGRDQALGARQ]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 1/1
#      W:   1 
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 6
#      W:   6 
# end gene g1
###
