# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'monDom5' -----
#
#----- prediction on sequence range chr6:249223-418978 (169756bp) -----
#
# start gene g1
chr6	AUGUSTUS	gene	249275	251839	0	+	.	g1
chr6	AUGUSTUS	transcript	249275	251839	.	+	.	g1.t1
chr6	AUGUSTUS	CDS	249275	249456	0.53	+	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	249275	249456	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	250098	250205	0.98	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	250098	250205	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	251505	251549	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	251505	251839	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	stop_codon	251547	251549	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	tts	251839	251839	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [APWCTHCKEMAQTWEDLAEKYKDREDIVIAELDSTANELEAFAIRGFPTLKYFPAGPDRKVIEYKSSRDLETFSKFLD
# NGGVLPEPEPKEPEVPLPEAGANDSKDHKDEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/3
# CDS introns: 0/2
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 7
#     RM:   7 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr6	AUGUSTUS	gene	255158	341114	0	-	.	g2
chr6	AUGUSTUS	transcript	255158	341114	.	-	.	g2.t1
chr6	AUGUSTUS	tts	255158	255158	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	255158	255616	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	stop_codon	255490	255492	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	255490	255616	0.97	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	259013	259180	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	259013	259180	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	261886	261993	0.01	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	261886	261993	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	267609	267854	0.89	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	267609	267854	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	274074	274250	0.97	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	274074	274250	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	276354	276901	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	276354	276901	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	295021	295158	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	295021	295158	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	300726	300801	0.58	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	300726	300801	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	319898	320038	0.96	-	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	319898	320038	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	341101	341114	0.65	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	341101	341114	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	start_codon	341112	341114	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MKRPRHGSWREPVNPYYVNSGYALAPATSANDSEQQSMSSDADTMSLTDSSVDGVPPYRTRKQHRREMQESVKANGRR
# TYRMPKEIRVEPQKFAAELINRLEAVQRTREAEEKLEERLKRVRAEEEGEDANVSSGPPIVSHKLPSAQTLHHFPPRYTEMGCTGIRDVHEENPESIL
# DEHVQRVMKTPGCQSPGPGHHSPKPRSPDNGHTAKIPGTLGTGPSGHSKHCTKSGMKLDAANLYHHKHVYHHIHHHSVMKPKEQIEAEATQRVQNSFA
# WNAESHNYATKSRNYSENMGLTSNPVDGLGYSGKTSMLSKRNSKKADSGKSAGSNYEMPGSPEDVEKNQKIMQWIIEGEKEISRHKKTNHGSSGTKKQ
# LGHDSSRPLSIERPGAVHPWVSAQLRNVVQPSHLFIQDPTMPPNPAPNPLTQLEEARRRLEEEEKRTGKLPTKQRYVQEVIQRGRSSVRPACMPMLNV
# VPAVSDMDLSESEAKLQKKPGNSSAPPCDTIVVAYYFCGEPIPYRTLVKGRVVTLGQFKELLTKKGNYRYYFKKVSDEFDCGVVFEEVREDDAILPIF
# EEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 151
#     RM: 151 
# incompatible hint groups: 1
#     RM:   1 
# end gene g2
###
