# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:142213-184728 (42516bp) -----
#
# start gene g1
chr6	AUGUSTUS	gene	147702	184426	.	+	.	g1
chr6	AUGUSTUS	transcript	147702	184426	.	+	.	g1.t1
chr6	AUGUSTUS	start_codon	147702	147704	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	147702	147762	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	147702	147762	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	149576	149670	0.91	+	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	149576	149670	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	154546	154644	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	154546	154644	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	166860	166970	0.95	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	166860	166970	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	168887	169030	0.99	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	168887	169030	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	173350	173526	0.96	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	173350	173526	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	177667	177755	0.59	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	177667	177755	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	181478	181507	0.32	+	1	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	181478	181507	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	182098	182269	0.58	+	1	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	182098	184426	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	stop_codon	182267	182269	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	tts	184426	184426	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [CPPRRRCGPCWTSSWARPGTETKPDRGSSLQMTVSARVTFWTAAPMISWLGRAWIXENVPKSTTWPSEQIMRLQVKKG
# TCFLNXMQWITWNPLLPSAIGGLSLPRSGXQRRKRRSVQKFLRRQKKYMSXMKKXENYLLKLSNWELKEMWMNPRRFLWKWRKSVQRKKKLRKNTEIP
# CLHPVSNSRSCVSVRSVQPTLGSMTMTVVLQTTSGASYTWGSFRSERSLISXGKLWLKSKRREIRIVXGGERRESGRSGXAGGLDQEPEIEGGHAPGT
# GVGGGPDLPPGSDESHPGPGPETDTGATAAVPGATAGATAGLPGTGVRNTSN]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/9
# CDS introns: 0/8
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 68
#     RM:  68 
# incompatible hint groups: 0
# end gene g1
###
