# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'mm10' -----
#
#----- prediction on sequence range chr17:1-26955 (26955bp) -----
#
# start gene g3
chr17	AUGUSTUS	gene	8512	17296	.	+	.	g3
chr17	AUGUSTUS	transcript	8512	17296	.	+	.	g3.t1
chr17	AUGUSTUS	start_codon	8512	8514	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	8512	8629	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	11821	11995	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12081	12288	0.87	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12473	12600	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12801	12879	0.69	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12925	13069	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	13172	13491	0.04	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	13924	14014	0.91	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	14095	14218	0.88	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	14461	14597	0.94	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	15346	15524	0.99	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	15601	15747	0.21	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	16602	16718	0.97	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	17000	17296	0.84	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	stop_codon	17294	17296	.	+	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MGRVGAGGTAREAATGSLLLLLLLLARPPPAAASNSKESEAGLVSEHFSQAPQKLSFYSWYGSTRLFHFRVPPDTVLL
# RWLLHVSQGSPSCTDEEITVHFRYGAPPVINPLGTSFPDNTLSHASFHIRALLSTLMLDNTSVNISHPAPGDWFLVAHLPPSSQKIQVKGFVPTCAYI
# FQPDMLVMRVVEVSTLEPDVPLPQTLLSYPSYLKIFVPEYTQELRLELQGCVSSVSPGCPRVLTCTGLAPSCHLLLSSPPWGRWLQVTFESLAEPHVT
# VGFTAKAVFTVCRPWSVTIHHLIQNNPNQTYDTSAIQLSQSAVHRDLGRSSRVDSGPFCLLNYPVLREDTDVVSVHFQPLNGAFVLVHSSMPSVMQLR
# LDTGMDSGGSFIIVLRTNKTEVTNGTLVAACVNAASPFLSFNTSLNCTTAFFQGYPMFLRASSHMANLIMPFPETDNWYLSLQLVCPESPEDCEQAVV
# RVETILYLVPCLNDCGPYGQCLLLRRYGYVYAGCSCKAGWRGWSCTDNSTAQTVAQQRAAALLLTLSNLMFLAPIAISLHRSFLVEASVYFYTMFFST
# FYHACDQPGEAVLCILSYDTLQYCDFLGSGASTWVTILCMARLKTILKQVLLVLGTLVIAMSLQMDRRGIWNLMGPCVFAFVIMASMWIYRCGHRGQC
# YPTSWQRWVFYLLPGISMASVGIAMYTSMMTSDNYYYTHSIWHILLAGSAAFLLPPREEKAGSWACLQKFPCHYQICRNDRDELYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/14
# CDS introns: 0/13
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 4
#     RM:   4 
# incompatible hint groups: 2
#     RM:   2 
# end gene g3
###
# start gene g2
chr17	AUGUSTUS	gene	18624	19785	.	+	.	g2
chr17	AUGUSTUS	transcript	18624	19785	.	+	.	g2.t1
chr17	AUGUSTUS	start_codon	18624	18626	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	18624	18911	0.88	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	19618	19785	0.85	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	stop_codon	19783	19785	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MPLHRYPVHLWQKLRLRQGICARLPAHFLRSLEEERTPTPVHYKPHGTKFKINPKNGQRERVEDVPIPVHYPPESQQG
# LWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDLIDEAYGFDFYILKASRG]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr17	AUGUSTUS	gene	20352	21443	.	+	.	g1
chr17	AUGUSTUS	transcript	20352	21443	.	+	.	g1.t1
chr17	AUGUSTUS	start_codon	20352	20354	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	20352	20453	0.86	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	20540	20626	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	21333	21443	0.91	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	stop_codon	21441	21443	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MDLKRGMLLRLARQDPHLHPENPERRAAIYDKYRSFVIPEAEAEWVGLTLEEALEKQRLLEEKDPVPLFKVYVEELVQ
# RLQEQVLSRPAVVQKRAGDHA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/3
# CDS introns: 0/2
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 0
# end gene g1
###
