# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'mm10' -----
#
#----- prediction on sequence range chr17:146502-178393 (31892bp) -----
#
# start gene g1
chr17	AUGUSTUS	gene	152992	165894	.	+	.	g1
chr17	AUGUSTUS	transcript	152992	165894	.	+	.	g1.t1
chr17	AUGUSTUS	start_codon	152992	152994	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	152992	153087	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	152992	153087	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	161346	161456	0.95	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	161346	161456	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	162200	162421	0.97	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	162200	162421	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	164403	164798	0.7	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	164403	165894	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	stop_codon	164796	164798	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	tts	165894	165894	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [WIXENVPKSTTWLFEQIMKLQVKKETCFLNXMLWITXSPSLQSVIGEPNLPKSGWLKHRRKSVQKFRLRGIGQTCSKK
# KRYFVLLIFSIXFSILRQKRYMNXMKKXENFLLKLSSXELKEMWTNPRRFLWKWRKFVQRKKKQRTGSPDIRVGTFMXKILMTVLMMSVSGRSSLRLV
# QSPVQKXRWRVGAAKGLVLYVSHPLKKPLKQLQRXMVELWPRSHCMXLXLSAKKSARLTSLTSICRGWQVYELCPTPXSTPTSQHLLQVTSWQLSHRL
# R]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 62.5
# CDS exons: 4/4
#      W:   4 
# CDS introns: 0/3
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 163
#     RM:  20 
#      W: 143 
# incompatible hint groups: 407
#      W: 407 
# end gene g1
###
