# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:24001-76000 (52000bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	33686	42376	0	-	.	g1
chr16	AUGUSTUS	transcript	33686	42376	.	-	.	g1.t1
chr16	AUGUSTUS	CDS	33686	33784	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	40279	40373	1	-	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	42316	42376	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	start_codon	42374	42376	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 83.3
# CDS exons: 3/3
#      M:   3 
# CDS introns: 2/3
#      M:   2 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 18
#      M:   5 
#     RM:  13 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	67451	75772	0	+	.	g2
chr16	AUGUSTUS	transcript	67451	75772	.	+	.	g2.t1
chr16	AUGUSTUS	start_codon	67451	67453	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	67451	67718	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	72520	72636	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	73006	73197	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	74421	74551	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	75130	75262	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	75461	75590	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	75658	75772	0.93	+	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	stop_codon	75770	75772	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCLFVVFVVSFVIPCPDRPAS
# QRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSAC
# ILVGRPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGHLYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAH
# YILFPCASSLCGCSVKGLYEKVTGSGGPFKSDPHWESMLNATTRRMLSHSVRTICVEPRAAPPAGRCSGYRKVTLGSDVRNGQIKVE]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 84.6
# CDS exons: 6/7
#      M:   6 
# CDS introns: 5/6
#      M:   5 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 18
#      M:  11 
#     RM:   7 
# incompatible hint groups: 1
#      M:   1 
# end gene g2
###
