# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:1-51000 (51000bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	2235	42376	0	-	.	g1
chr16	AUGUSTUS	transcript	2235	42376	.	-	.	g1.t1
chr16	AUGUSTUS	stop_codon	2235	2237	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	2235	2376	0.53	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	2630	2651	0.01	-	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	3018	3172	0.43	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	3578	3607	0.84	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	5964	6052	0.98	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	12099	12275	0.99	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	19041	19184	0.96	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	21115	21225	0.96	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	33686	33784	0.93	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	40279	40373	0.72	-	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	42316	42376	0.85	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	start_codon	42374	42376	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNS
# MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRD
# RRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRMSCSVHIVFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAG
# EI]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 74
#     RM:  74 
# incompatible hint groups: 1
#     RM:   1 
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	44171	44509	0	+	.	g2
chr16	AUGUSTUS	transcript	44171	44509	.	+	.	g2.t1
chr16	AUGUSTUS	start_codon	44171	44173	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	44171	44509	0.96	+	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	stop_codon	44507	44509	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MADPEKLQVSSPPPPPPSPSSSDASAASYPGSPVSLGWPVPSRSSGRTVDPLEEVGLQIGDAAFSLTKLLEATSAVSA
# QVEELAFKCTEKARFLKTWRDLWKEGYDSLKPDD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/1
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g2
###
