# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'mm10' -----
#
#----- prediction on sequence range chr17:117545-160183 (42639bp) -----
#
# start gene g2
chr17	AUGUSTUS	gene	120974	121071	.	-	.	g2
chr17	AUGUSTUS	transcript	120974	121071	.	-	.	g2.t1
chr17	AUGUSTUS	CDS	120974	121071	0.91	-	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	exon	120974	121071	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	start_codon	121069	121071	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MKTKPPKTNEQIDAPAVGQDHLLNTPSGTPPT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 50
# CDS exons: 1/1
#      W:   1 
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 11
#      E:   1 
#      W:  10 
# end gene g2
###
# start gene g1
chr17	AUGUSTUS	gene	148093	150187	.	+	.	g1
chr17	AUGUSTUS	transcript	148093	150187	.	+	.	g1.t1
chr17	AUGUSTUS	start_codon	148093	148095	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	148093	148153	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	148093	148153	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	150093	150187	.	+	2	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	exon	150093	150187	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 2/2
#      W:   2 
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 212
#      E:   3 
#      W: 209 
# end gene g1
###
