# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
#----- prediction on sequence range chr25:133368-156091 (22724bp) -----
#
# start gene g1
chr25	AUGUSTUS	gene	133368	139927	0	-	.	g1
chr25	AUGUSTUS	transcript	133368	139927	.	-	.	g1.t1
chr25	AUGUSTUS	tts	133368	133368	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	133368	137978	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	stop_codon	137871	137873	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	137871	137978	0.95	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	138329	138415	0.8	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	138329	138415	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	138505	138639	0.32	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	138505	138639	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	139002	139091	0.05	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	139002	139091	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	139640	139927	0.78	-	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	exon	139640	139927	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	start_codon	139925	139927	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MPLHKVPVGLWKRLRLREGIYSRLPAHYLRSLEEARTPTPVHFRPHGAKFKINPKNGQRERVEDVPIPVHYPPESQLG
# LWGGEGWLKGHRYVNNDKFSKRVKKVWKPQLFQRELYSEILDTRFTVTTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPDDPERRAAIYDKYKAFVIP
# EAEAEWVGLTLDEAVEKQRLLEEKDPVPLFKVYVEELVEQLQQQALSEPAVVQKRANRT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 0
# incompatible hint groups: 2
#     RM:   2 
# end gene g1
###
# start gene g2
chr25	AUGUSTUS	gene	141602	150296	0	-	.	g2
chr25	AUGUSTUS	transcript	141602	150296	.	-	.	g2.t1
chr25	AUGUSTUS	stop_codon	141602	141604	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	141602	141898	0.99	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	141602	141898	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	142251	142367	0.99	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	142251	142367	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	143120	143245	0.77	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	143120	143245	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	143335	143513	0.95	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	143335	143513	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	143911	144047	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	143911	144047	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	144442	144565	0.93	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	144442	144565	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	144646	144736	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	144646	144736	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	145128	145447	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	145128	145447	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	145525	145793	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	145525	145793	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	145960	146087	0.96	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	145960	146087	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	146444	146636	0.83	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	146444	146636	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	146719	146896	0.18	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	146719	146896	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	150230	150296	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	exon	150230	150296	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	start_codon	150294	150296	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MSLLLLLLSRSPPAAAGDGRKSDSRLVSEQFSQAPQKLAFYNWYGSARLFHFRVPPDTVLLHWLLQVTRGSGPTCNNV
# ETTVYFRYGAPPVINPLGTSFANNTSVQPSFLLRMLQDNASVNVSYPAPGDWFVAAHLPPSSHKIEVKDFIPTCAYIFQPDMLVVRVVEMSILEPDVP
# LPLVLLSQPSYLKVFVPKHTQELRLELQGCVSNGSLGCPVHLTVGSATLPGNFQKVLTCSDPTTACRLLLPSPPWERWLQVTAKSLAGPRVLVTFSAV
# AALTACRPWTANLQRLLQSSPNQSSNASTGPPPLSPNTQDLDQSGEAGSGAFCFRSFPILREDMDVVSVRFRPLDRASVLVQSDMPSVMKLHLNTGMD
# SGGSLSISVSVNQTVIASNTSVVACVTAGSPFLSFNTSLNCTTAFFQGYPLSLSASSPTANLSIPYPETDNWYLSLQVLCPERPEECMQPSVLVETTL
# YLVPCLNDCGPYGQCLLLRRHGYLYAGCSCRAGWRGWSCTDNSTAQTLAQQKVATLLLTLSNLMFLAPIAISVHRCLLVEASVYAYTMFFSTPGDAVL
# CILNYDTLQYCDFLGSGVSIWVTVLCMARLKASLKYVLFILGALVFAMSLQLDRRAAWNTTGPCLFAIVVMVTMWVYRCGRRRHCYPPSWQRWVFYLL
# PGLSMAALALTIYVSMMTSENYYYTHSIWHMLLAGSAAFLLPPREQHAEPWACAQKLTCHYEICKNHRDELYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/13
# CDS introns: 0/12
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 1
#     RM:   1 
# end gene g2
###
