# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'monDom5' -----
#
#----- prediction on sequence range chr6:416990-540519 (123530bp) -----
#
# start gene g1
chr6	AUGUSTUS	gene	434958	436733	0	-	.	g1
chr6	AUGUSTUS	transcript	434958	436733	.	-	.	g1.t1
chr6	AUGUSTUS	stop_codon	434958	434960	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	434958	434964	.	-	1	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	434958	434964	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	435856	436733	0.05	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	435856	436733	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	start_codon	436731	436733	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MNVQEQGFPLDLGGSFTEDAPRPPVPGEEGELVSTDPRPVSHNFYFGKGDGIKSETSTATPRRSDLDLGYEPEGSASP
# TPPYLKWAESLHSLLDDQDGINLFRTFLKQEDSADLLDFWFACSGFRKLEPCDSNEEKRLKLAKAIYRKYILDNNGIVSRQTKPATKSFIKDCIMKQH
# IDPAMFDQAQTEVQSMMEDNTYPLFLKSDIYLEYTRTGLESPKIFSDQSPGSGTGKGIPGYLPTLNEDEEWKCDQDTEEDNGRDSAPSSRLTQKLLME
# TAPQRASSNRRYSESREFSL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr6	AUGUSTUS	gene	476198	478465	0	-	.	g2
chr6	AUGUSTUS	transcript	476198	478465	.	-	.	g2.t1
chr6	AUGUSTUS	stop_codon	476198	476200	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	476198	476212	0.02	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	476198	476212	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	478415	478465	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	478415	478465	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	start_codon	478463	478465	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MADSGRAGQEEAPRVRQSVRI]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 0
# end gene g2
###
# start gene g3
chr6	AUGUSTUS	gene	505385	512428	0	-	.	g3
chr6	AUGUSTUS	transcript	505385	512428	.	-	.	g3.t1
chr6	AUGUSTUS	stop_codon	505385	505387	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	505385	505483	0.75	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	505385	505483	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	507142	507228	0.9	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	507142	507228	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	507781	507915	1	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	507781	507915	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	510842	510994	0.99	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	510842	510994	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	512141	512428	0.01	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	512141	512428	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	start_codon	512426	512428	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MPLHKYPTKLWNTLKLSQGIYSRLPEHYLKSLKNEGTPTAVHYKPHGVKYKINPKNGQRELVQDVPIPLYFPPESQRG
# LWGGEGWIRGYRYTNNDKLSKRVRKTWKPHLYERELYSEILDKKFKTMVTMRTLDLIDEAYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARRDPQL
# HPDDPEKREAIYNKYKEFVIPEDEAEWVGLTLEEAVEKQRLLEKKDPVPLFKVYVEELIQQLQEQALSQPAVMQKKA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 12
#     RM:  12 
# incompatible hint groups: 0
# end gene g3
###
# start gene g4
chr6	AUGUSTUS	gene	518834	539484	0	-	.	g4
chr6	AUGUSTUS	transcript	518834	539484	.	-	.	g4.t1
chr6	AUGUSTUS	stop_codon	518834	518836	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	518834	519130	0.02	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	518834	519130	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	521387	521503	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	521387	521503	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	525064	525210	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	525064	525210	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	526066	526244	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	526066	526244	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	532130	532266	0.94	-	1	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	532130	532266	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	533361	533484	0.79	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	533361	533484	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	533766	533853	0.66	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	533766	533853	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	535629	535993	0.3	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	535629	535993	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	536623	536891	0.36	-	1	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	536623	536891	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	538459	538589	0.99	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	538459	538589	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	538816	539008	1	-	1	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	538816	539008	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	539307	539484	0.93	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	539307	539484	.	-	.	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [LKYSYEYFVQSPQKLSFYSWYGSAKLYHFQVPSDTMLLRWLLQAFKSPGSECTDVEITVHFRYGAPPVINPLDTKFPA
# NTTVRPSFYIKLIHNNTIINVSSPAPGDWFIAAHLPRSPQKIEVKGVATPCTYIFQPDMLVLRLTDVTILEPNMPLTQTLSGSQMKYLKVFIPKYTSD
# LQLELRSCVSNGSQVCPVRLIVGPNTLPQSFQKVFSCSDHHEPCRLLLPAPPWDTWLQVTAEGRAEPNVSVTFDAVASFTVCRPGSLGPLVISYISLN
# QSLNASAASLSMGRSPWHLGKRMGVGRSPFSLVGDFRNASALSGFCLLSYPVIREELDVVSVRFWPLSGSGIIVWSSLPTLFPINLNTGMDSGSTLIV
# ILKLNTTLGSNMSVVGCLSAASPVLSLNTSQNCTTAFSEGYSLYLSDSSREAMLSVPYPETGNWYLSLQLICPKNVSECQQVRANVETSLSLVPCFND
# CGPYGQCRLLRRHGYLYASCTCKAGWQGWSCTDDTKAQTVVQQNLATLLLTLSNLMFLLPVAVAVCRRYLVEASVYTYTMFFSTFYHACDQPGVAVLC
# IMDYDTLQYCDFLGSVVSIWVTILCMSRVKAHVKYVLFVLGTLIIAMSLQLDRRGIWNIMGPCLCALIIMITMWVYRCIHRHHCYPTSWKRWAFYLLP
# GISLAFVAIAIYTFMGTNDNYFYTHSIWHVLMASSVAFLLPPREKNTEPWAWSQKLTCRYQLCKNTQEELYAVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/12
# CDS introns: 0/12
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 25
#     RM:  25 
# incompatible hint groups: 0
# end gene g4
###
