# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'bosTau8' -----
#
#----- prediction on sequence range chr25:46974-53142 (6169bp) -----
#
# (none)
#----- prediction on sequence range chr25:51361-89467 (38107bp) -----
#
# start gene g1
chr25	AUGUSTUS	gene	58422	65963	0	+	.	g1
chr25	AUGUSTUS	transcript	58422	65963	.	+	.	g1.t1
chr25	AUGUSTUS	start_codon	58422	58424	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	58422	58686	0.59	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	62383	62502	0.92	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	62697	62888	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	63568	63698	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	63892	64024	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	64168	64297	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	64599	64739	0.98	+	1	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	64953	65028	0.97	+	1	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	65133	65288	0.05	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	65561	65663	0.68	+	0	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	CDS	65752	65963	0.98	+	2	transcript_id "g1.t1"; gene_id "g1";
chr25	AUGUSTUS	stop_codon	65961	65963	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MTDGKDLEAEIHPLKSENRKVPENAGALAGKEPRGTPAPQTRLSHCRTAAFFLSLFACLLVVFVVSFIIPCPDRPALQ
# GVWRIDYNAAVAYDFLAAEDVNKDKIQDILFLYKNTNSSRGNSSFSCADEGFSCPCTFVAAVSGASGSVLWERPVAQDRAFVECGILQPRGSAAPSAC
# VVLGRPGSLVAVDTLTGKTLWSQPSSFGGNASVLSPLLRVPDLDADGAPDLLVLIQEENQVNGSIYSGGTGQQVSPPDSLGVDGTSGSILHVTRAGAH
# YVLIPCGTALCSRSVKGLYEKVSRRDSPLKSDPLWEDMLSAASHRLVVHSSGAIRYLMNVPGKAGDDLLLVSTEAYMLLDGQDLTPRWTFGTTQVLRK
# PVLGYYKPDTPAVLVENGTGPDRQVLLLDLGSGAVLWSQALPGLPGDPPSASLPTADHRSAFFFWGIHEPTDSNQTEPGAAGRRLYMLHPTLPGVLLE
# LDNVSVPIVAFQVVLLEPGRHAACILLTGPASPSPPGLVSVTKHKVQDLVLAGRVVHLAEGGAESDQAVRDRLSRLRYRSEA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 8
#     RM:   8 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr25	AUGUSTUS	gene	68167	74683	0	-	.	g2
chr25	AUGUSTUS	transcript	68167	74683	.	-	.	g2.t1
chr25	AUGUSTUS	stop_codon	68167	68169	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	68167	68275	0.19	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	68349	68431	0.34	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70127	70265	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70343	70430	0.98	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70522	70637	0.96	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70712	70825	0.82	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	70933	70994	0.07	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	71069	71098	0.01	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	71895	71963	0.02	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	72985	73066	.	-	1	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	73184	73260	0.69	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	73420	73478	0.69	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	73592	73643	0.8	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	74245	74351	0.37	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	74456	74506	0.05	-	2	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	CDS	74587	74683	0.54	-	0	transcript_id "g2.t1"; gene_id "g2";
chr25	AUGUSTUS	start_codon	74681	74683	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MERMVVTMQDPDQGVRMRSQRLLVTVIPHAVNGSDIVEWLMQKYSIAEDEALHLGSLLVQHGYLYPLRDPRRLELRPD
# ETPYRFQTPYFWTSTLWPAAELDYAIYLAKKNIRKQGALVDHEKEHYQQLHRKINHAWDLVMMQAREQLRAAKQRRKGDRLVIACQEQTYWLVNRPPP
# GAPSVLEQGPGRGPCTAGRVPMTKTLDFYRREVECLRRALGRARVKSSTCLEAYLKFSSQHGPHDPIMSGCLPSNPWVTDDDAYWAMNAPSAAVPTRL
# RVEQWAFSFRELLEDPVGRAHFMDFLGKEFSAENLSFWEACEELRHGGQAQVPALVDAVYQQFLAPGAARWVNIDSRTMEQTLAGLTQPHRHVLDDAQ
# RHIYLLMKKDSYPRFLKSDLYRDLLAEAVVPLETKRRVFPFTRKPRHSSPSPALLPASASGEPVGGDGDGET]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/16
# CDS introns: 0/15
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 5
#     RM:   5 
# incompatible hint groups: 0
# end gene g2
###
# start gene g3
chr25	AUGUSTUS	gene	81302	85347	0	+	.	g3
chr25	AUGUSTUS	transcript	81302	85347	.	+	.	g3.t1
chr25	AUGUSTUS	start_codon	81302	81304	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	81302	81341	0.02	+	0	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	84279	84458	0.14	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	84529	84612	0.99	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	84845	84921	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	85001	85064	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	CDS	85148	85347	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr25	AUGUSTUS	stop_codon	85345	85347	.	+	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MGSGVSPTQRARPVLLTDKEGGQLPPEEALDEAVPEYRAPGKKSLLEIQQLDPDDESLVKYKRALLGPVLPAVDPSLP
# NVQVTRLTLISEQAPGPIVMDLTGELAALKNQVFVLKEGVDYKVKITFKVNKEIVSGLKCLHHTYRHGLRVDKAVYMVGSYGPSAQEYEFVTPVEEAP
# RGALVRGAYVVTSFFTDDDRTAHLSWEWGLYVCQDWER]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/6
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 7
#     RM:   7 
# incompatible hint groups: 0
# end gene g3
###
# start gene g4
chr25	AUGUSTUS	gene	85689	88648	0	+	.	g4
chr25	AUGUSTUS	transcript	85689	88648	.	+	.	g4.t1
chr25	AUGUSTUS	start_codon	85689	85691	.	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	85689	85914	0.99	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	86479	86685	0.99	+	2	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	86765	86898	1	+	2	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	86972	87109	0.8	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87183	87299	0.99	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87377	87502	0.98	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87571	87768	0.99	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	87849	87969	0.99	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	88046	88227	0.84	+	2	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	88341	88451	0.71	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	CDS	88574	88648	0.88	+	0	transcript_id "g4.t1"; gene_id "g4";
chr25	AUGUSTUS	stop_codon	88646	88648	.	+	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MDGQFLPVLVLLLGASGLCGQGLGPRGPLEEPPEEKPPEEKPPEEEPPEEDGVLVLSRQTLGQALQEHPALLVEFYAP
# WCGHCRALAPEYSKAAALLAAESARVTLAKVDGPAEPELAEEFAVTEYPTLKFFREGNRTHPEEYTGPREAEGIAEWLRRRVGPSARQLEDEEDIRAL
# TDTRDVVVVGFFQDLQDRDVATFLGLAQDALDMTFGLTDRPQLFQKFGLTKDTVVLFKKYDEGRADFPVDKELGLDQGDLSRFLLTHSMHLVTEYSSE
# TSSKIFEAKILNHLLLFINQTLDAHRELLAGFREAAPPFRGQVLFVVVDVGADNDHVLQYFGLKAQEAPTLRFINIETTKKYAPEHGAPVTAATITDF
# CRTVLGGGVKPYHLSQEVPPDWDQRPVKTLVGKNFEQVAFDETKNVFIKFYAPWCAHCKEMAPAWEELAEKYRDHEDVIIAELDATANELEAFPVHGF
# PTLKYFPAGPGRKVIDYKGARDLETFSKFLDSGGELPAEEPAEVPGAAFPEKPGNTTEPKDEKPGNTTEPRDEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 1
#     RM:   1 
# end gene g4
###
