# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'galGal4' -----
#
#----- prediction on sequence range chr14:148191-149999 (1809bp) -----
#
# start gene g1
chr14	AUGUSTUS	gene	148713	149044	.	-	.	g1
chr14	AUGUSTUS	transcript	148713	149044	.	-	.	g1.t1
chr14	AUGUSTUS	stop_codon	148713	148715	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	148713	149000	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	148713	149044	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	start_codon	148998	149000	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MDNKDSEAEIHPLKTEDVKAQENHENSVERRIIIKQSSQLSRLSRWRTAAFFISLFLCLIIVFAFSFIIPCPERPVSE
# RTWLRNYDNAGEFAVAE]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 1/1
#      W:   1 
# CDS introns: 0/0
# 5'UTR exons and introns: 1/1
#      W:   1 
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 3
#      W:   3 
# incompatible hint groups: 27
#      E:   1 
#      W:  26 
# end gene g1
###
#----- prediction on sequence range chr14:122710-149999 (27290bp) -----
#
# start gene g5
chr14	AUGUSTUS	gene	123542	126431	.	-	.	g5
chr14	AUGUSTUS	transcript	123542	126431	.	-	.	g5.t1
chr14	AUGUSTUS	stop_codon	123542	123544	.	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	123542	123616	1	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	123542	123616	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	123733	123819	1	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	123733	123819	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	123921	124102	1	-	2	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	123921	124102	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	124241	124361	1	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	124241	124361	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	124456	124650	0.99	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	124456	124650	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	124726	124851	0.99	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	124726	124851	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	124924	125040	1	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	124924	125040	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	125105	125242	1	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	125105	125242	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	125311	125444	1	-	2	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	125311	125444	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	125634	125840	1	-	2	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	125634	125840	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	CDS	126194	126431	1	-	0	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	exon	126194	126431	.	-	.	transcript_id "g5.t1"; gene_id "g5";
chr14	AUGUSTUS	start_codon	126429	126431	.	-	0	transcript_id "g5.t1"; gene_id "g5";
# protein sequence = [MRGGAVLCGLLLSLAWLGPAWGAEGGEEDGEVVVAEEEEEDEEDEVLSDELEEEDGVLVLHEHNFERALREHRLLLVE
# FYAPWCGHCRRLAPEFARAAALLRNGSESARLGKVDAVAQTALSAEFHIEAFPTLKLFRDGNRTHPVAYSGRMDAEGMALWVQRRAGPSATLLHDADT
# AAAFVSARDIAAVGFFKDLRGEAARAFYEVAAEVVDVAFGVAEADELFEAYGLSADTVCLFKKFDEGRTDFPVDPEQGLDVAKLTRLLRVHSLQLVMD
# FSNETSSQIFGAKIPHHMLLFLNTSVAEQQALRDEFRVAAGTFRGEVLFVVVDVDGYGATVLPFFGLKPSDAPTLRFIKMENNRKYRMEEDAFSATAV
# RDFVRAVLDGKVKPQLLSAEPPEDWDTRPVKVLVGKTFEQVAFDETKNVFVKFYAPWCTHCQEMAAAWEELGERYKDHEDIVIAEMDATANELENITI
# SGYPTLHYFPAGPGRKMVEYRSARDVETFSKFLENGGKLPEEPPTVSKAPENSTESPSPSGAAEAREEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 11/11
#      W:  11 
# CDS introns: 10/10
#      E:  10 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 17
#      E:  10 
#     RM:   7 
# incompatible hint groups: 128
#     RM:   2 
#      W: 126 
# end gene g5
###
# start gene g4
chr14	AUGUSTUS	gene	126628	129423	.	-	.	g4
chr14	AUGUSTUS	transcript	126628	129423	.	-	.	g4.t1
chr14	AUGUSTUS	tts	126628	126628	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	exon	126628	127121	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	stop_codon	126922	126924	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	CDS	126922	127121	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	CDS	127199	127262	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	exon	127199	127262	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	CDS	127506	127582	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	exon	127506	127582	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	CDS	127677	127760	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	exon	127677	127760	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	CDS	128385	128570	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	exon	128385	128570	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	CDS	129351	129423	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	exon	129351	129423	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr14	AUGUSTUS	start_codon	129421	129423	.	-	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MLGLDVCEAGGQLLELLWLTLCYRDIMADKEGVMLSLEEEEEDADVALAYKTPEKKSLREIQELDPGDESLRKYKQAL
# LGNIPVAVDASVPNVQVTKLTLMCEQAPGPITMDLTGDLEVLQSRPFVLKEGVDYRVKVSFKVNREIVCGLKCLHLTYRRGRPVDRDVFMVGSYAPRA
# EEYEVVTPAEEVPRGRLVRGSYRVRSLVTDDDKTEHLAWEWGLCIRKGWED]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 6/6
#      W:   6 
# CDS introns: 5/5
#      E:   5 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 60
#      E:   5 
#     RM:   6 
#      W:  49 
# incompatible hint groups: 68
#      W:  68 
# end gene g4
###
# start gene g3
chr14	AUGUSTUS	gene	130410	134499	.	+	.	g3
chr14	AUGUSTUS	transcript	130410	134499	.	+	.	g3.t1
chr14	AUGUSTUS	start_codon	130410	130412	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	130410	130472	0.98	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	130410	130472	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	130675	130771	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	130675	130771	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	131044	131094	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	131044	131094	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	131172	131278	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	131172	131278	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	131360	131411	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	131360	131411	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	131487	131545	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	131487	131545	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	131698	131774	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	131698	131774	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	131864	131945	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	131864	131945	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	132049	132117	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	132049	132117	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	132489	132518	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	132489	132518	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	132593	132654	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	132593	132654	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	132845	132958	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	132845	132958	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	133075	133190	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	133075	133190	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	133652	133739	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	133652	133739	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	133842	133980	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	133842	133980	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	134040	134122	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	134040	134122	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	CDS	134190	134322	1	+	1	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	exon	134190	134499	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	stop_codon	134320	134322	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr14	AUGUSTUS	tts	134499	134499	.	+	.	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MTIGGPRGGGQPRLQMPCLGKMERMIVSMQDPDMGIKMRNQRLLITVIPHAMTGNDIVEWLIQKYGISEEESLHLGNL
# IVRHGYIYPLRDPRSLVLRADESPYRFQTPYFWTSTKWPATELDYAIYLAKKNIRKQGELIEHEKDNYNLLHKRINHTWDFVVMQAREQLRAAKQRRK
# GDRIVIDCQEQAYWLVNRPPPGAPNVLEQGPERRNCHTTRVQLAKNMDYYKREIEYCRKAMARTRVKSSICLEGYLKFNEQYVPHDPIMSGCLPSNPW
# ITDDTTYWAMNAPTVTTPTKLRVERWGFNFSELLMDPLGRTQLLEFLKKEFSAENLSFWEACEELRYGEQSRINEIVDSIYQQFLAPGATRWVNIDSK
# TMERTLEGIKTPHRYVMDDAQMHIYMLMKKDSYPRFLKSELYRNLLAEAVIPPETKKRVFPFMRKQRHSSPSPALLLPAGDTEAKGEEKSRSPAAVPE
# EES]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 97.1
# CDS exons: 17/17
#      W:  17 
# CDS introns: 15/16
#      E:  15 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 52
#      E:  15 
#     RM:   8 
#      W:  29 
# incompatible hint groups: 184
#      E:   1 
#     RM:   1 
#      W: 182 
# end gene g3
###
# start gene g2
chr14	AUGUSTUS	gene	136872	149044	.	-	.	g2
chr14	AUGUSTUS	transcript	136872	149044	.	-	.	g2.t1
chr14	AUGUSTUS	tts	136872	136872	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	136872	138063	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	stop_codon	137852	137854	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	137852	138063	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	138200	138302	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	138200	138302	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	139162	139314	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	139162	139314	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	139747	139825	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	139747	139825	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	140034	140174	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	140034	140174	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	140563	140701	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	140563	140701	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	141169	141298	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	141169	141298	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	143184	143314	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	143184	143314	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	147077	147259	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	147077	147259	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	147561	147677	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	147561	147677	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	148736	149000	1	-	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	148736	149044	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	start_codon	148998	149000	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MDNKDSEAEIHPLKTEDVKAQENHENSVERRIIIKQSSQLSRLSRWRTAAFFISLFLCLIIVFAFSFIIPCPERPVSE
# RTWLRNYDNAVAYRFLAIEDVNEDKVQDVIFAFKASNGSSSFNSSCLDEGLPSPCAFITAVSGTNGRVLWERPAAMEVGWMQCGIKQLGGAPGCLLVG
# QPVALTAVDQRTGEVQWRQSDDFGANYTVLTPLSVIPDVDGDGVQDLIIFIATGDKIKTFIHSGKNGKQIGSTGSLNVDGEARYVMLSPGSSHYFLFY
# TANSLYAYSLKDLYSAATGMEIKLPGLEQDPQWEKNIDHTTHRLSPLSTGDIRYMAKIPGRSRENILLVSSETAMLISAQNLQTLWTLNVSRVMSEPL
# LGYYKPDVLDVVLESEIGPNRKKVMIVEGGSGAVQWDLKLNSRAESPRPATLSTADHRSTFLIWGEYQVAGNETISAAPLQKLYLFHPSYTNVLLELR
# NSTDQIVAFNATLFERSRHACYVLLRGPQPGEEPGLVSLMKRKLKEDVSESRVIWLSQVAVDSEQYIRDRLYRMRFLSRV]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 11/11
#      W:  11 
# CDS introns: 10/10
#      E:  10 
# 5'UTR exons and introns: 1/1
#      W:   1 
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 204
#      E:  10 
#     RM:  48 
#      W: 146 
# incompatible hint groups: 100
#     RM:   1 
#      W:  99 
# end gene g2
###
