# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:109999-166550 (56552bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	109999	111253	0	+	.	g1
chr20	AUGUSTUS	transcript	109999	111253	.	+	.	g1.t1
chr20	AUGUSTUS	CDS	109999	110135	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	109999	110135	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	110391	110511	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	110391	110511	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	110592	110773	0.98	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	110592	110773	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	110870	110980	0.98	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	110870	110980	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	111103	111147	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	111103	111253	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	stop_codon	111145	111147	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	tts	111253	111253	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [KAEAAPTLRFINVETTKKYAPVDGGPVTAASVTAFCHAVLNGQVKPYLLSQEVPPDWDQRPVKTLVGKNFEQVAFDET
# KNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDIIIAQLDATANELDAFAVHSFPTLKYFPAGPGRKVIEYKSARDLETLSKFLDNGGAVPTEEPTE
# EPAAPFPEPRANSTVGSKEEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 50
# CDS exons: 3/5
#      W:   3 
# CDS introns: 2/4
#      E:   2 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 2
#      E:   2 
# incompatible hint groups: 41
#      E:   1 
#      W:  40 
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	111468	147474	0	-	.	g2
chr20	AUGUSTUS	transcript	111468	147474	.	-	.	g2.t1
chr20	AUGUSTUS	tts	111468	111468	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	111468	112260	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	stop_codon	112134	112136	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	112134	112260	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	113467	113634	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	113467	113634	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	115179	115286	.	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	115179	115286	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	117333	117578	.	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	117333	117578	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	121067	121237	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	121067	121237	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	121645	122174	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	121645	122174	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	129055	129192	0.85	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	129055	129192	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	135293	135389	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	135293	135389	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	139001	139141	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	139001	139141	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	147440	147474	0.04	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	147440	147474	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	147472	147474	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MCGPADSASAPRYGSWREPVNPYYVNAGYALAPATSANDSEQQSLSSDADTLSLTDSSVDGIPPYRIRKQHRREMQES
# VQVNGRVPLPHIPRTYRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRMEEEGEDGDPSSGLPGPCHKLPPAPAWHHFPPRCVDVGCA
# GLRDAHEENPESILDEHVQRVLRTPGRQSPGPGHRSPDSGHMAKMPVALGSAASGHGKHAPKSGVKLDAAGLHHHRHVHHHVHHSTARPKEQVEAEAA
# RRAQSSFAWGPEPHSHGAKSRGYSESVGAAPNASDGLAHSGKAGMACKRNAKKAESGKSASAEVPGASEDAEKNQKIMQWIIEGEKEISRHRRTGHGS
# SGTRKPQPHENSRPLSLERPAAVHPWAGPQLRTSVQPSHLFIQDPTMPPHPAPNPLTQLEEARRRLEEEEKRASRAPSKQRYVQEVMRRGRACVRPAC
# APVLRVVPAVSDMELSETETRSQRKAGGGSAQPCDSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVREDE
# AVLPVFEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 73.7
# CDS exons: 9/10
#      W:   9 
# CDS introns: 4/8
#      E:   4 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 89
#      E:   4 
#     RM:  10 
#      W:  75 
# incompatible hint groups: 431
#      E:   2 
#      W: 429 
# end gene g2
###
