# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:49001-54995 (5995bp) -----
#
# (none)
#----- prediction on sequence range chr16:52996-101000 (48005bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	67451	78059	0	+	.	g1
chr16	AUGUSTUS	transcript	67451	78059	.	+	.	g1.t1
chr16	AUGUSTUS	start_codon	67451	67453	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	67451	67718	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	72520	72636	0.97	+	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	73006	73197	0.14	+	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	74421	74551	0.99	+	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	75130	75262	0.92	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	75461	75590	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	76299	76439	0.99	+	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	76737	76812	0.99	+	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	77053	77208	0.41	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	77651	77753	0.62	+	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	77848	78059	0.9	+	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	stop_codon	78057	78059	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCLFVVFVVSFVIPCPDRPAS
# QRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSAC
# ILVGRPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGHLYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAH
# YILFPCASSLCGCSVKGLYEKVTGSGGPFKSDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNAGADVLLVGSEAFVLLDGQELTPRWTPKAAHVLRK
# PIFGRYKPDTLAVAVENGTGTDRQILFLDLGTGAVLCSLALPSLPGGPLSASLPTADHRSAFFFWGLHELGSTSETETGEARHSLYMFHPTLPRVLLE
# LANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVSVIKHKVRDLVPSSRVVRLGEGGPDSDQAIRDRFSRLRYQSEA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 8
#     RM:   8 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	82306	88948	0	-	.	g2
chr16	AUGUSTUS	transcript	82306	88948	.	-	.	g2.t1
chr16	AUGUSTUS	stop_codon	82306	82308	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	82306	82420	0.87	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	82540	82622	0.96	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	83560	83698	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	83781	83868	0.96	-	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	84021	84136	0.96	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	84239	84352	0.87	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	84436	84497	0.73	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	84577	84606	0.48	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	85900	85968	0.48	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	86512	86593	0.14	-	1	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	86797	86873	0.35	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	87080	87138	0.6	-	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	87251	87302	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	88013	88119	0.26	-	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	88320	88370	0.15	-	2	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	88439	88535	0.57	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	88886	88948	0.54	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	start_codon	88946	88948	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAAGPAPPPGRPRAQMPHLRKMERVVVSMQDPDQGVKMRSQRLLVTVIPHAVTGSDVVQWLAQKFCVSEEEALHLGAV
# LVQHGYIYPLRDPRSLMLRPDETPYRFQTPYFWTSTLRPAAELDYAIYLAKKNIRKRGTLVDYEKDCYDRLHKKINHAWDLVLMQAREQLRAAKQRSK
# GDRLVIACQEQTYWLVNRPPPGAPDVLEQGPGRGSCAASRVLMTKSADFHKREIEYFRKALGRTRVKSSVCLEAYLSFCGQRGPHDPLVSGCLPSNPW
# ISDNDAYWVMNAPTVAAPTKLRVERWGFSFRELLEDPVGRAHFMDFLGKEFSGENLSFWEACEELRYGAQAQVPTLVDAVYEQFLAPGAAHWVNIDSR
# TMEQTLEGLRQPHRYVLDDAQLHIYMLMKKDSYPRFLKSDMYKALLAEAGIPLEMKRRVFPFTWRPRHSSPSPALLPTPVEPTAACGPGGGDGVA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/17
# CDS introns: 0/16
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 6
#     RM:   6 
# incompatible hint groups: 0
# end gene g2
###
# start gene g3
chr16	AUGUSTUS	gene	93718	95851	0	+	.	g3
chr16	AUGUSTUS	transcript	93718	95851	.	+	.	g3.t1
chr16	AUGUSTUS	start_codon	93718	93720	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	93718	93790	1	+	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	94783	94962	0.97	+	2	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	95062	95145	0.96	+	2	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	95334	95410	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	95504	95567	0.98	+	0	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	CDS	95652	95851	0.98	+	2	transcript_id "g3.t1"; gene_id "g3";
chr16	AUGUSTUS	stop_codon	95849	95851	.	+	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MLGLDACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPDDRSLAKYKRVLLG
# PLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
# YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/6
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 0
# end gene g3
###
# start gene g4
chr16	AUGUSTUS	gene	96207	99982	0	+	.	g4
chr16	AUGUSTUS	transcript	96207	99982	.	+	.	g4.t1
chr16	AUGUSTUS	start_codon	96207	96209	.	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	96207	96405	0.01	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	97424	97630	0.01	+	2	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	97696	97829	1	+	2	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	97915	98052	0.08	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	98121	98237	0.96	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	98349	98474	1	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	98543	98740	1	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	99390	99510	0.86	+	0	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	99591	99772	0.99	+	2	transcript_id "g4.t1"; gene_id "g4";
chr16	AUGUSTUS	CDS	99872	99982	0.98	+	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MSRQLLPVLLLLLLRASCPWGQEQGARSPSEEPPEEEIPKEDGILVLSRHTLGLALREHPALLVEFYAPWCGHCQALA
# PEYSKAAAVLAAESMVVTLAKVDGPAQRELAEEFGVTEYPTLKFFRNGNRTHPEEYTGPRDAEGIAEWLRRRVGPSAMRLEDEAAAQALIGGRDLVVI
# GFFQDLQDEDVATFLALAQDALDMTFGLTDRPRLFQQFGLTKDTVVLFKKFDEGRADFPVDEELGLDLGDLSRFLVTHSMRLVTEFNSQTSAKIFAAR
# ILNHLLLFVNQTLAAHRELLAGFGEAAPRFRGQVLFVVVDVAADNEHVLQYFGLKAEAAPTLRLVNLETTKKYAPVDGGPVTAASITAFCHAVLNGQV
# KPYLLSQEIPPDWDQRPVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDIIIAELDATANELDAFAVHGFPTLKYFPAG
# PGRKVIEYKSTRDLETFSKFLDNGGVLPTEEPPEEPAAPFP]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 1
#     RM:   1 
# end gene g4
###
