# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:110368-165559 (55192bp) -----
#
# start gene g2
chr6	AUGUSTUS	gene	111604	118133	.	-	.	g2
chr6	AUGUSTUS	transcript	111604	118133	.	-	.	g2.t1
chr6	AUGUSTUS	CDS	111604	111734	0.8	-	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	111604	111734	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	112817	113008	1	-	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	112817	113008	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	113264	113380	0.88	-	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	113264	113380	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	117869	118133	0.01	-	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	117869	118133	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	start_codon	118131	118133	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MDSKDLEAEIHPLRNEDKRLPETPGNPGHADEKLKSSPRQPRLSRCRTVVFFLSLFVCLFVVFVVSFIIPCPERPVSQ
# GMWRIDYSAAVTYDFLATEDINRDRIQDVLFLYKNANGSNNFNLSCTDEGFSSPCTFVAAVSGASGSVLWERPAAQDGALVRCSVPQTQGSRMSSACI
# LVGRPSSFVAVDLFTGETLWSQPPGFDRNTSDLSSLLQLPDVDADGAPDLLLLAQEDKE]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/4
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 8
#     RM:   8 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr6	AUGUSTUS	gene	147665	158954	.	+	.	g1
chr6	AUGUSTUS	transcript	147665	158954	.	+	.	g1.t1
chr6	AUGUSTUS	tss	147665	147665	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	147665	147761	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	start_codon	147701	147703	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	147701	147761	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	149575	149669	0.96	+	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	149575	149669	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	154545	154643	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	154545	154643	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	158928	158954	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	158928	158954	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	stop_codon	158952	158954	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELDNSAVGNIS]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/4
# CDS introns: 0/3
# 5'UTR exons and introns: 0/1
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 23
#     RM:  23 
# incompatible hint groups: 0
# end gene g1
###
