# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:23633-70504 (46872bp) -----
#
# start gene g2
chr6	AUGUSTUS	gene	25065	29283	.	+	.	g2
chr6	AUGUSTUS	transcript	25065	29283	.	+	.	g2.t1
chr6	AUGUSTUS	start_codon	25065	25067	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	25065	25108	0.1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	29091	29283	0.07	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	stop_codon	29281	29283	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAERGGRRGRSPQVRVGAPRSQGPEGPVLVLGPGDTCRHGPGGGWTWTQPWEPGPATAAALQNQGKHWGPVSGSGEAT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr6	AUGUSTUS	gene	34853	67612	.	+	.	g1
chr6	AUGUSTUS	transcript	34853	67612	.	+	.	g1.t1
chr6	AUGUSTUS	start_codon	34853	34855	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	34853	35730	0.01	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	67472	67612	0.69	+	1	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MNIQEQGFPLDLGASFTEDAPRPPVPGEEGELVSTDPRPVSHSFCSGKGAGVKGETSAATPRRSDLDLGYEPEGSASP
# TPPYLKWAESLHSLLDDQDGINLFRTFLKQEDCADLLDFWFACSGFRKLEPCDSNEEKRLKLAKAIYRKYILDNNGIVSRQTKPATKSFIKDCIVKQL
# IDPAMFDQAQTEIQSTMEENTYPSFLKSDIYLEYTRTGSESPKLCSDQSSGSGTGKGIPGYLPTLNEDEEWKCDQEQDEDSGRDPAPPGRLTQKLLLE
# TAAPRASSSRRYSEGREFRCGSWREPVHPYYVSSGYALAPATSANDSEQQSLSSDADSLSLTDSS]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 62
#     RM:  62 
# incompatible hint groups: 0
# end gene g1
###
