# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:24440-84431 (59992bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	27138	35152	0	-	.	g1
chr20	AUGUSTUS	transcript	27138	35152	.	-	.	g1.t1
chr20	AUGUSTUS	stop_codon	27138	27140	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	27138	27164	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	27138	27164	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	35057	35152	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	exon	35057	35152	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	start_codon	35150	35152	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MDLGECTKIHDLALRADYEIASKERDLFFELDNSTVGNVS]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 50
# CDS exons: 1/2
#      W:   1 
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 327
#      E:   2 
#     RM:   2 
#      W: 323 
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	42306	45360	0	-	.	g2
chr20	AUGUSTUS	transcript	42306	45360	.	-	.	g2.t1
chr20	AUGUSTUS	stop_codon	42306	42308	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	42306	42326	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	42306	42326	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	43271	43365	.	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	43271	43365	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	45300	45360	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	exon	45300	45360	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	45358	45360	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTDEMCMC]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 66.7
# CDS exons: 2/3
#      W:   2 
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 143
#      E:   4 
#      W: 139 
# end gene g2
###
# start gene g3
chr20	AUGUSTUS	gene	72897	84431	0	+	.	g3
chr20	AUGUSTUS	transcript	72897	84431	.	+	.	g3.t1
chr20	AUGUSTUS	start_codon	72897	72899	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	72897	73164	0.47	+	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	exon	72897	73164	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	81009	81125	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	exon	81009	81125	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	81500	81691	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	exon	81500	81691	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	82873	83171	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	exon	82873	84431	.	+	.	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	stop_codon	83169	83171	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	tts	84431	84431	.	+	.	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MLDHQDLEAEVHPLKNEERKSQENLGNPSKNEDKLKSTPPQSRLSRCRTVAFFLSLFLCLFVVFVVSFVIPCPDRPAS
# QRMWRIDYNAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFNRSCVDEGFSSPCAFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSAC
# ILVGRPGSFIAVDSFTGETLWNHSSSFSRNASILSPLLQVPDVDSDGAPDLLVFTQEQEEVQPSLAFLPSHQGHLPHGRPLPPHLLPLPRQDLGLTTC
# RGLSQSPTFPTPIDPAY]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 100
# CDS exons: 4/4
#      W:   4 
# CDS introns: 3/3
#      E:   3 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 108
#      E:   3 
#      W: 105 
# incompatible hint groups: 73
#      E:   3 
#      W:  70 
# end gene g3
###
