# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:136067-189423 (53357bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	138997	146499	0	-	.	g1
chr20	AUGUSTUS	transcript	138997	146499	.	-	.	g1.t1
chr20	AUGUSTUS	stop_codon	138997	138999	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	138997	139141	0.94	-	1	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	143084	143308	0.43	-	1	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	146393	146499	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	start_codon	146497	146499	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MQSSPGVVVCCFPIVVVTSRCHMVPYYQGGWRLLPGRLLLLLSPLLPDLGACVQWNLLCAGACGKLETCVSPASDFKD
# KQVFHKYERHTWEVRVGEGFGIGHMNTEGFVLLYGSWREPVNPYYVNAGYALAPATSANDSEQQSLSSDADTLSLTDSSV]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/3
# CDS introns: 0/2
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 11
#     RM:  11 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	174841	176089	0	-	.	g2
chr20	AUGUSTUS	transcript	174841	176089	.	-	.	g2.t1
chr20	AUGUSTUS	stop_codon	174841	174843	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	174841	174880	0.01	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	175212	176089	0.62	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	176087	176089	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MNIQEQGFPLDLGASFTEDAPRPPVPGEEGELVSTDPRPASYSFCSGKGVGIKAETSTATPRRSDLDLGYEPEGSASP
# TPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQL
# IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESPKVCSDQSSGSGTGKGISGYLPTLNEDEEWKCDQDMDEDDGRDAAPPGRLPQKLLLE
# TAAPRASSSRRYSEGREFRIWIYPVDMVLCA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g2
###
# start gene g3
chr20	AUGUSTUS	gene	185895	187929	0	-	.	g3
chr20	AUGUSTUS	transcript	185895	187929	.	-	.	g3.t1
chr20	AUGUSTUS	stop_codon	185895	185897	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	185895	185939	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	187879	187929	0.01	-	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	start_codon	187927	187929	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MADSGTVGREQAHGARQRRCLALLPRLILNR]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 1
#     RM:   1 
# end gene g3
###
