# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:3389-25632 (22244bp) -----
#
# start gene g2
chr6	AUGUSTUS	gene	12649	18138	.	+	.	g2
chr6	AUGUSTUS	transcript	12649	18138	.	+	.	g2.t1
chr6	AUGUSTUS	CDS	12649	12826	0.02	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	12900	13092	0.7	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	13569	13699	0.93	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	13885	14153	0.99	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	14240	14559	0.99	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	14863	14953	0.99	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	15032	15155	0.95	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	15554	15690	0.97	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	16498	16676	0.93	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	16756	16902	0.96	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	17396	17512	0.98	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	17842	18138	0.98	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	stop_codon	18136	18138	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [VRLVSEQFSQSPQKLSFYSWYGSARLFHFRVPPDAVLVRWLLQVSQGGGPACSHAEVTVYFRYGAPPVINPLGTGFPA
# NTSVQSPFFIKMLQSNASVNVSHPAPGDWFMAAHLPPSSQKIEVKGFVSPSCVYTFHPDMLVVRAVEVSILEPDVPLPQTLRSHPSYLKIFIPEYTQE
# LRLELQGCVTNGSLGCPVRLTVGSATLPRNFQKVLTCISLTWSCHLLLPSPPWERWLQVTAKSLAGPHVLVAFRAVAALTACRPWTMNLQHLLQSSPN
# RSCNASAALLPPGAGSWVPGRSRGAGGGPFCLTSYPVIREDTDVLSVRFWPADRVSVLVRSGTPSVMRLYLHTGTDSGGSLSISLQANQTAMTNSTRV
# AVCVNAASPFLSFNESLNCTTAFFQGVRLSLSAASRKADLIVPYPETDNWYLSLQLVCPESPEECEQASVLVETALYLVPCLNDCGRYGQCLLLRRHS
# YLYAGCSCKAGWRGWSCTDNSTAQTVAQQRVATLLLTLSNLVFLAPITVSVHRALLVEASVYAYTMFFSTFYHACDQPGEAVLCILGYDTLQFCDFLG
# SGVSIWVTILCMARLKAAQKHVLFLLGTLIFAMSLQLDRRGAWNTLGPCLFAFVVMVTMWVYRCGHRRHCYPTSWQRWAFYLLPGISMAAVAVAIYTS
# MMTSDNYYYTHSIWHMLLAGSAAFLLPPREEHTKPWACSQKLTCHYQICRNHREELYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/12
# CDS introns: 0/11
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 4
#     RM:   4 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr6	AUGUSTUS	gene	19370	21076	.	+	.	g1
chr6	AUGUSTUS	transcript	19370	21076	.	+	.	g1.t1
chr6	AUGUSTUS	start_codon	19370	19372	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	19370	19660	0.99	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	19765	19917	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	20088	20222	0.79	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	20325	20411	0.9	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	20969	21076	0.92	+	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	stop_codon	21074	21076	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MPLHKVPVGLWRRLWLREGICSRLPPHYLRSLQEARAPAPVHYRPRGVGAGAGAGAGGRRERVQDVPIPVYRPPEAQL
# GLWGGEGWVVGYRYVGDDKLSKRVKKVWKPQLLQRELYSEILDTKFAVTVTARTLDLIDAAYGFDFYILKTPEEDLCSKFGMDLKRGMLLRLARQDPQ
# LHPDNPQKRAAIFDKYKEFVIPEAEAEWVGLTLDEAVEKQRLLEEKDPTPLFKVYVEELIGQLEQQALSEPVVVQKRASRE]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 1
#     RM:   1 
# end gene g1
###
