# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:53047-60165 (7119bp) -----
#
# (none)
#----- prediction on sequence range chr20:58166-111998 (53833bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	69060	86077	0	+	.	g1
chr20	AUGUSTUS	transcript	69060	86077	.	+	.	g1.t1
chr20	AUGUSTUS	start_codon	69060	69062	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	69060	69129	0.95	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	73117	73164	0.88	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	80846	80929	0.61	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	81009	81125	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	81500	81691	0.99	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	82873	83003	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	83478	83610	0.85	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	83805	83934	0.99	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	84326	84466	0.89	+	1	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	84760	84835	0.88	+	1	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	85068	85223	0.38	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	85669	85771	0.76	+	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	85866	86077	1	+	2	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	stop_codon	86075	86077	.	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MHQQESTSSTSFGQHLLWALPRPDRPASQRMWRIDYNAAGRTLLIRVRKKPPSSLGDLTGAGSTEQRIIYDFLAVDDI
# NGDRIQDVLFLYKNTNSSNNFNRSCVDEGFSSPCAFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVGRPGSFIAVDSFTGETLWN
# HSSSFSRNASILSPLLQVPDVDSDGAPDLLVFTQEQEEVSGHLYSGSTGHQIGLRGGLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKV
# TGRDGPFKNDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNTGADVLLVGSEGFVLLDGQELTPRWTPKAAHVLRKPIFGHYKPDTLAVVVENGTGTN
# RQILFLDLGTGAVLCSLALPSLPGGPLSASLPTADHRSAFFFWGLHELGSTSETETGEARHSLYMFHPTLPRVLLELANVSTHIVAFDAVLFEPSRHA
# AYILLTGPADSEAPGLVSVIKHKVRDLVPSSRVVHLGEGEPDSDQAIRDRFSRLRYRREA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/13
# CDS introns: 0/12
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 17
#     RM:  17 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	90162	97523	0	-	.	g2
chr20	AUGUSTUS	transcript	90162	97523	.	-	.	g2.t1
chr20	AUGUSTUS	stop_codon	90162	90164	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	90162	90276	0.53	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	90396	90478	0.97	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	92556	92694	1	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	92777	92864	0.97	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	93043	93158	0.97	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	93252	93365	0.96	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	93458	93519	0.88	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	93599	93628	0.74	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	94961	95029	0.13	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	95574	95655	0.06	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	95842	95918	0.27	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	96122	96180	0.72	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	96293	96344	0.01	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	97055	97161	0.26	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	97356	97406	0.02	-	2	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	97475	97523	0.99	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	97521	97523	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MRSQRLLVTVIPHAVTGGDVVQWLTQKFCISEEEARHLGAVLVQHGYIYPLRDPRSLVLRPDETPYRFQTPYFWTSTL
# WPAAELDYAIYLAKKNIRKQGTLVDYEKECYDRLHTKINHAWDLVLMQAREQLRAAKQRRKGDRLVIACQEQTYWLVNRPPPGAPSVLEQSPGRGSCA
# ASRVHMTKRADFYKQEIEYCRRALGRTRVKSSVCLEAYLSFCGQRGPHDPLVSGCLPSNPWISDDAAYWVMNAPTVVAPTKLRVERWGFSFRELLEDP
# VGRAHFMDFLGKEFSGENLSFWEACEELRYGAQAQVPTLVDAVYQQFLAPGAARWVNIDSRTMERTLEGLRQPHRYVLDDAQLHIYMLMKKDSYPRFL
# KSDMYKGLLAEAGIPLETKKRVFPFSRRPRHSSPSPALLPTPVEPTAAGGPGGGDGVA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/16
# CDS introns: 0/15
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 6
#     RM:   6 
# incompatible hint groups: 0
# end gene g2
###
# start gene g3
chr20	AUGUSTUS	gene	98702	107264	0	+	.	g3
chr20	AUGUSTUS	transcript	98702	107264	.	+	.	g3.t1
chr20	AUGUSTUS	start_codon	98702	98704	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	98702	98730	0.02	+	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	104383	104486	0.01	+	1	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	105741	105920	0.02	+	2	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	106023	106106	0.05	+	2	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	106283	106359	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	CDS	107112	107264	0.17	+	0	transcript_id "g3.t1"; gene_id "g3";
chr20	AUGUSTUS	stop_codon	107262	107264	.	+	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MGVRRGRGVPLLDQPLTPRLGRPQEYPSAQTEAPTGAGEGKGEHVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLE
# IRQLDPDDRSLAEYKRALLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVLKEGVDYRVKITFKEYEFVTPVEEAPRGALVR
# GPYLVVSLFTDDDRTHHLSWEWGLRISQDWKD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/6
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 11
#     RM:  11 
# incompatible hint groups: 0
# end gene g3
###
# start gene g4
chr20	AUGUSTUS	gene	107598	110980	0	+	.	g4
chr20	AUGUSTUS	transcript	107598	110980	.	+	.	g4.t1
chr20	AUGUSTUS	start_codon	107598	107600	.	+	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	107598	107793	0.19	+	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	108785	108991	1	+	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	109057	109190	1	+	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	109272	109409	0.92	+	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	109478	109594	0.99	+	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	109706	109831	0.87	+	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	109938	110135	0.99	+	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	110391	110511	0.82	+	0	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	110592	110773	0.9	+	2	transcript_id "g4.t1"; gene_id "g4";
chr20	AUGUSTUS	CDS	110870	110980	0.91	+	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MSRQLLPVLLLLLRASCPWGQEQGPKSPSEEPPEEEIPKEDGILVLSRHTLGLALREHPALLVEFYAPWCGHCKALAP
# EYSKAAALLAAESTAVTLSKVDGPAQPELAEEFGVTEYPTLKFFRSGNRTHPEEYTGPREAEGIAEWLRRRVGPSALRLEDEAAAQALIDGRDLVVIG
# FFQDLQDEDVATFLALARDALDMTFGLTDRPRLFEQFGLTKDTVVLFKKFDEGRADFPVDEELGLDLGDLSRFLVTHSMHLVTEFNSQTSPKIFAARI
# LNHLLLFVNQTLAAHRELLAGFGEAAPHFRGQVLFVVVDVAADNEHVLQYFGLKAEAAPTLRFINVETTKKYAPVDGGPVTAASVTAFCHAVLNGQVK
# PYLLSQEVPPDWDQRPVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDIIIAQLDATANELDAFAVHSFPTLKYFPAGP
# GRKVIEYKSARDLETLSKFLDNGGAVPTEEPTEEPAAPFP]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 1
#     RM:   1 
# incompatible hint groups: 1
#     RM:   1 
# end gene g4
###
