# This output was generated with AUGUSTUS (version 3.2.2).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'rheMac3' -----
#
#----- prediction on sequence range chr20:136067-189423 (53357bp) -----
#
# start gene g1
chr20	AUGUSTUS	gene	139001	176089	0	-	.	g1
chr20	AUGUSTUS	transcript	139001	176089	.	-	.	g1.t1
chr20	AUGUSTUS	CDS	139001	139141	0.04	-	1	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	CDS	175212	176089	0.61	-	0	transcript_id "g1.t1"; gene_id "g1";
chr20	AUGUSTUS	start_codon	176087	176089	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MNIQEQGFPLDLGASFTEDAPRPPVPGEEGELVSTDPRPASYSFCSGKGVGIKAETSTATPRRSDLDLGYEPEGSASP
# TPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQL
# IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESPKVCSDQSSGSGTGKGISGYLPTLNEDEEWKCDQDMDEDDGRDAAPPGRLPQKLLLE
# TAAPRASSSRRYSEGREFRYGSWREPVNPYYVNAGYALAPATSANDSEQQSLSSDADTLSLTDSS]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 59
#     RM:  59 
# incompatible hint groups: 0
# end gene g1
###
# start gene g2
chr20	AUGUSTUS	gene	184448	187929	0	-	.	g2
chr20	AUGUSTUS	transcript	184448	187929	.	-	.	g2.t1
chr20	AUGUSTUS	stop_codon	184448	184450	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	184448	184553	.	-	1	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	CDS	187874	187929	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr20	AUGUSTUS	start_codon	187927	187929	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MADSGTVGREQAHGARQVRVSLCHPGWSAMGRSWLTATSASQVQAIILPQPPE]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/2
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 5
#     RM:   5 
# end gene g2
###
