Package | Description |
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htsjdk.tribble.index |
Modifier and Type | Method and Description |
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static IndexFactory.IndexBalanceApproach |
IndexFactory.IndexBalanceApproach.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
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static IndexFactory.IndexBalanceApproach[] |
IndexFactory.IndexBalanceApproach.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static <FEATURE_TYPE extends Feature,SOURCE_TYPE> |
IndexFactory.createDynamicIndex(java.io.File inputFile,
FeatureCodec<FEATURE_TYPE,SOURCE_TYPE> codec,
IndexFactory.IndexBalanceApproach iba)
create a dynamic index, given an input file, codec, and balance approach
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protected static java.util.LinkedHashMap<java.lang.Double,TribbleIndexCreator> |
DynamicIndexCreator.scoreIndexes(double densityOfFeatures,
java.util.Map<IndexFactory.IndexType,TribbleIndexCreator> indexes,
int longestFeature,
IndexFactory.IndexBalanceApproach iba)
score the available indexes for the specified density and feature lengths
The scoring method is trying to determine how many features would be returned for a sample one base query; or:
(features/seek).
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Constructor and Description |
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DynamicIndexCreator(java.io.File inputFile,
IndexFactory.IndexBalanceApproach iba) |