htsjdk.samtools.filter
Interfaces
SamRecordFilter
Classes
AggregateFilter
AlignedFilter
DuplicateReadFilter
FailsVendorReadQualityFilter
FilteringIterator
InsertSizeFilter
IntervalFilter
MappingQualityFilter
NotPrimaryAlignmentFilter
OverclippedReadFilter
ReadNameFilter
SecondaryAlignmentFilter
SecondaryOrSupplementaryFilter
SolexaNoiseFilter
TagFilter
WholeReadClippedFilter