Package | Description |
---|---|
htsjdk.variant.bcf2 | |
htsjdk.variant.variantcontext | |
htsjdk.variant.variantcontext.writer | |
htsjdk.variant.vcf |
Class and Description |
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VCFHeader
A class to represent a VCF header
|
Class and Description |
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VCFCompoundHeaderLine
a base class for compound header lines, which include info lines and format lines (so far)
|
VCFContigHeaderLine
A special class representing a contig VCF header line.
|
VCFHeader
A class to represent a VCF header
|
Class and Description |
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VCFCompoundHeaderLine
a base class for compound header lines, which include info lines and format lines (so far)
|
VCFHeader
A class to represent a VCF header
|
VCFHeaderLineCount
the count encodings we use for fields in VCF header lines
|
Class and Description |
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AbstractVCFCodec |
VCFCompoundHeaderLine
a base class for compound header lines, which include info lines and format lines (so far)
|
VCFCompoundHeaderLine.SupportedHeaderLineType |
VCFContigHeaderLine
A special class representing a contig VCF header line.
|
VCFFileReader
Simplified interface for reading from VCF/BCF files.
|
VCFFilterHeaderLine |
VCFFormatHeaderLine |
VCFHeader
A class to represent a VCF header
|
VCFHeader.HEADER_FIELDS |
VCFHeaderLine |
VCFHeaderLineCount
the count encodings we use for fields in VCF header lines
|
VCFHeaderLineType
the type encodings we use for fields in VCF header lines
|
VCFHeaderVersion
information that identifies each header version
|
VCFIDHeaderLine
an interface for ID-based header lines
|
VCFInfoHeaderLine |
VCFRecordCodec
Writes VariantContext instances to an OutputStream without headers or metadata.
|
VCFSimpleHeaderLine |