Package | Description |
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htsjdk.samtools |
Modifier and Type | Method and Description |
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static BAMIndexMetaData[] |
BAMIndexMetaData.getIndexStats(htsjdk.samtools.BAMFileReader bam)
Prints meta-data statistics from BAM index (.bai) file
Statistics include count of aligned and unaligned reads for each reference sequence
and a count of all records with no start coordinate
|
BAMIndexMetaData |
SRAIndex.getMetaData(int reference) |
BAMIndexMetaData |
AbstractBAMFileIndex.getMetaData(int reference)
Return meta data for the given reference including information about number of aligned, unaligned, and noCoordinate records
|
BAMIndexMetaData |
BAMIndex.getMetaData(int reference)
Gets meta data for the given reference including information about number of aligned, unaligned, and noCoordinate records
|