Class and Description |
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Index
Interface for all index implementations.
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Class and Description |
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Index
Interface for all index implementations.
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Class and Description |
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AbstractIndex
An abstract implementation of the index class.
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AbstractIndex.BlockStats |
AbstractIndex.IndexType |
Block
Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
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ChrIndex
Represents an index on a specific chromosome
|
Index
Interface for all index implementations.
|
IndexCreator
An interface for creating indexes
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IndexFactory.IndexBalanceApproach
We can optimize index-file-creation for different factors.
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IndexFactory.IndexType
an enum that contains all of the information about the index types, and how to create them
|
MutableIndex
Some Index implementations can be modified in memory.
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TribbleIndexCreator
Base class for Tribble-specific index creators.
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Class and Description |
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AbstractIndex
An abstract implementation of the index class.
|
Block
Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
|
ChrIndex
Represents an index on a specific chromosome
|
Index
Interface for all index implementations.
|
IndexCreator
An interface for creating indexes
|
MutableIndex
Some Index implementations can be modified in memory.
|
TribbleIndexCreator
Base class for Tribble-specific index creators.
|
Class and Description |
---|
AbstractIndex
An abstract implementation of the index class.
|
Block
Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
|
ChrIndex
Represents an index on a specific chromosome
|
Index
Interface for all index implementations.
|
IndexCreator
An interface for creating indexes
|
MutableIndex
Some Index implementations can be modified in memory.
|
TribbleIndexCreator
Base class for Tribble-specific index creators.
|
Class and Description |
---|
Block
Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
|
Index
Interface for all index implementations.
|
IndexCreator
An interface for creating indexes
|
Class and Description |
---|
IndexCreator
An interface for creating indexes
|