Package | Description |
---|---|
htsjdk.tribble.index | |
htsjdk.tribble.index.interval | |
htsjdk.tribble.index.linear |
Modifier and Type | Field and Description |
---|---|
protected java.util.LinkedHashMap<java.lang.String,ChrIndex> |
AbstractIndex.chrIndices
the map of our chromosome bins
|
Modifier and Type | Class and Description |
---|---|
static class |
IntervalTreeIndex.ChrIndex |
Modifier and Type | Class and Description |
---|---|
static class |
LinearIndex.ChrIndex
Blocks are organized as a simple flat list:
Block 0
Block 1
Block 2
There's a constant bin width, so that each block corresponds to a specific interval
over the genome based on its index, as in:
Block 0: (0 - binWidth]
Block 1: (binWidth - 2 * binWidth]
Block 2: (2 * binWidth - 3 * binWidth]
Note that covered regions are open on the left ( and closed on the right ].
|