Package | Description |
---|---|
htsjdk.samtools |
Modifier and Type | Method and Description |
---|---|
BAMFileSpan |
BAMFileSpan.clone()
Deep clone the given chunk list.
|
BAMFileSpan |
SRAIndex.getSpanOverlapping(Bin bin) |
BAMFileSpan |
BrowseableBAMIndex.getSpanOverlapping(Bin bin)
Perform an overlapping query of all bins bounding the given location.
|
BAMFileSpan |
SRAIndex.getSpanOverlapping(int referenceIndex,
int startPos,
int endPos) |
BAMFileSpan |
BAMIndex.getSpanOverlapping(int referenceIndex,
int startPos,
int endPos)
Gets the compressed chunks which should be searched for the contents of records contained by the span
referenceIndex:startPos-endPos, inclusive.
|
static BAMFileSpan |
BAMFileSpan.merge(BAMFileSpan[] spans) |
Modifier and Type | Method and Description |
---|---|
protected void |
BAMFileSpan.add(BAMFileSpan span)
Merge one span into another
|
static BAMFileSpan |
BAMFileSpan.merge(BAMFileSpan[] spans) |