Package | Description |
---|---|
htsjdk.samtools | |
htsjdk.samtools.sra | |
htsjdk.samtools.util | |
htsjdk.tribble | |
htsjdk.tribble.bed | |
htsjdk.tribble.gelitext | |
htsjdk.variant.variantcontext |
Modifier and Type | Class and Description |
---|---|
class |
BAMRecord
Wrapper class for binary BAM records.
|
class |
SAMRecord
Java binding for a SAM file record.
|
Modifier and Type | Class and Description |
---|---|
class |
SRALazyRecord
Extends SAMRecord so that any of the fields will be loaded only when needed.
|
Modifier and Type | Class and Description |
---|---|
class |
Interval
Represents a simple interval on a sequence.
|
Modifier and Type | Interface and Description |
---|---|
interface |
Feature
Represents a locus on a reference sequence.
|
Modifier and Type | Class and Description |
---|---|
class |
SimpleFeature
A simple concrete Feature.
|
Modifier and Type | Interface and Description |
---|---|
interface |
BEDFeature |
Modifier and Type | Class and Description |
---|---|
class |
FullBEDFeature
Object for full BED file.
|
class |
SimpleBEDFeature
Feature from a BED file without exon blocks.
|
Modifier and Type | Class and Description |
---|---|
class |
GeliTextFeature
Deprecated.
this is deprecated and no longer supported
|
Modifier and Type | Class and Description |
---|---|
class |
VariantContext
High-level overview
|