SRAAlignmentIterator(SRAAccession accession,
ngs.ReadCollection run,
SAMFileHeader header,
ReferenceCache cachedReferences,
SRAIterator.RecordRangeInfo recordRangeInfo,
Chunk chunk) |
SRAIndexedSequenceFile(SRAAccession acc) |
SRALazyRecord(SAMFileHeader header,
SRAAccession accession,
ngs.ReadCollection run,
ngs.AlignmentIterator alignmentIterator,
java.lang.String readId,
java.lang.String alignmentId) |
SRALazyRecord(SAMFileHeader header,
SRAAccession accession,
ngs.ReadCollection run,
ngs.ReadIterator unalignmentIterator,
java.lang.String readId,
int unalignedReadFragmentIndex) |
SRALazyRecord(SAMFileHeader header,
SRAAccession accession,
java.lang.String readId,
int unalignedReadFragmentIndex) |
SRALazyRecord(SAMFileHeader header,
SRAAccession accession,
java.lang.String readId,
java.lang.String alignmentId) |
SRAUnalignmentIterator(SRAAccession accession,
ngs.ReadCollection run,
SAMFileHeader header,
SRAIterator.RecordRangeInfo recordRangeInfo,
Chunk chunk) |