Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs.
The method needs an idXML file with IDs and predicted RTs. The second input file is a file containing the protein sequences which are considered as positive hits. This tool then evaluates the tps, fps, tns, and fns for the unfiltered IDs, for the IDs filtered in first RT dimension, for the IDs filtered in the second RT dimension as well as for the IDs filtered in both dimensions. The output is a table with either csv format (can be imported by Excel) or latex format (to include in tables in your latex manuscripts).
OpenMS / TOPP release 2.0.0 | Documentation generated on Wed Dec 2 2015 19:41:33 using doxygen 1.8.9.1 |