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IDDecoyProbability

Util to estimate probability of peptide hits

pot. predecessor tools $ \longrightarrow $ IDDecoyProbability $ \longrightarrow $ pot. successor tools
MascotAdapter (or other ID engines) -
PeptideIndexer
Experimental classes:
This util is deprecated and might behave not as expected!

So far an estimation of the false score distribution with a gamma distribution and the correct score distribution with a gaussian distribution is performed. The probabilities are calculated using bayes law, similar to PeptideProphet. This implementation is much simpler than that of PeptideProphet.

Note
For mzid in-/out- put, due to legacy reason issues you are temporarily asked to use IDFileConverter as a wrapper. The command line parameters of this tool are:
 INI file documentation of this tool: 

For the parameters of the algorithm section see the algorithms documentation:
decoy_algorithm


OpenMS / TOPP release 2.0.0 Documentation generated on Wed Dec 2 2015 19:41:33 using doxygen 1.8.9.1